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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11517#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1523 fasta sequence
[CAATGGCGGACAAGCCGAGCCGCGGGCTGGTGCTCTACGCCGCGGGGCACGCGGCGCTGCTCCCTCCGGCGAGCGGCGGCGGCGGCGGAGCCGGAGGAGGAGGGGGAGGGAGCCACCTCGACGCCTTCGCGTCTCTCGCGTCATGTGGCTTCCTCTCCCTCCGCTCGCCCCCTCTCGCGAGTGGGGAGGAGAAGCGTGACAGCACGATTCTTGAGCTCGCGCAGCTGCTCGACGTGTACGATGATCTCTTCCCTGCTAAGACTGAGAAAACTGGTCAAGAGACTGCCCAGGTGGATCCACTGCAACTAGCAGTTCCCAAGCTATCTGAGAGGTTTATGGGGATCAGAGCTGCCATGGTCACCAATTGCCCCCTTGTTAGTTCTTTTGCAGCAAATCTTGGTTTTCATGTATCCGGGACTGAAGATTTAGTTGCACAATCTGGATCTTCCGCTGCTTCTAAGGAGGCTGGAATTATTTCCCAGGCGTTAAGTCTGCTTGGATTTTCAGAGGGGAATGTTCAGGAGACATCTGAATTTGATCTGGTGTTTCTGCATGTTGCCATGGAGAATACAAACAGCAAGTTGGGAAAATTGGGAATGAAGACTGATCTAAATCGGCTTGATAAATTAGTTGGTGCAATCATGGAAGCGGCGCCCATAAGTTCAGCTATCGCCTCCCGTATTCTTGTATCTGTGATGTTGAGCTATGGGTCTGCTGCTGAAAATAAGGATGAGTTTTCCATCTCAAAATCTTCGACTGAAATAGATTCTGACTTGAACTTGCTTCGCCCACGCCAGAGCTATACTATGAAAGCAGGAAATACATTGGATGATGTTAGGAATCATCATCCGATTCTGTTAGCACAGTGGCAGGAAGGA-GTTACACGCTCTGATTTGACCGAAGGGTTCTCTTTTGAGGAATTCATAAAGCGTGGTGGAAATCTTGCTATGCTTGCTGAACGCTTTCTACATG-AGGTGGCATTTAAGCTCTGGAAAGCTCCTAAATATGGAGCTTAAATCTGCCTGAGAAGATCCTCTCTAAATAAGGCGCGAAAATAATAAAAAGAGAATGATCTGTTGGGTTCCTTCTGTAAATGGGAACTGCAGATATTGCAAATAGATGAGTTTTGGAGGAGACGTACTCTCCCAAGGTTACAGAATTGATAAAGGAGATGCTGATAAACTGAAAACTAGTACGGTTTTTACTGAATTGATGGGAGATTTGTACTGTGCTTATCCGATGCTTTTGAACGGAGGAACTTTCCTGAGCTTATGTGAAAC-GCCGTTGCTGTTTGTGTAGAATCCATTTACTTGAAACTTTCTAACTTGGGAGCTGTTTCAGCACTGATATCAGTATCTGACTGATGCCATCCCTAGATCATTGTAATTTAATTCTTGATGCTAGCTAGCTGGTCCTAAAAATCGTGTGGCTGGAGCCTC-TTTTTTCTTTTAATAAGAACAGTACTACTAATAGAATTGATTCTAGAGAAAAAAAAAAGGCAGCCATCCAGCTCCCTATCACTA]
[+] EMBL AK069843 [CAATGGCGGACAAGCCGAGCCGCGGGCTGGTGCTCTACGCCGCGGGGCACGCGGCGCTGCTCCCTCCGGCGAGCGGCGGCGGCGGCGGAGCCGGAGGAGGAGGGGGAGGGAGCCACCTCGACGCCTTCGCGTCTCTCGCGTCATGTGGCTTCCTCTCCCTCCGCTCGCCCCCTCTCGCGAGTGGGGAGGAGAAGCGTGACAGCACGATTCTTGAGCTCGCGCAGCTGCTCGACGTGTACGATGATCTCTTCCCTGCTAAGACTGAGAAAACTGGTCAAGAGACTGCCCAGGTGGATCCACTGCAACTAGCAGTTCCCAAGCTATCTGAGAGGTTTATGGGGATCAGAGCTGCCATGGTCACCAATTGCCCCCTTGTTAGTTCTTTTGCAGCAAATCTTGGTTTTCATGTATCCGGGACTGAAGATTTAGTTGCACAATCTGGATCTTCCGCTGCTTCTAAGGAGGCTGGAATTATTTCCCAGGCGTTAAGTCTGCTTGGATTTTCAGAGGGGAATGTTCAGGAGACATCTGAATTTGATCTGGTGTTTCTGCATGTTGCCATGGAGAATACAAACAGCAAGTTGGGAAAACTGGGAATGAAGACTGATCTAAATCGGCTTGATAAATTAGTTGGTGCAATCATGGAAGCGGCGCCCATAAGTTCAGCTATCGCCTCCCGTATTCTTGTATCTGTGATGTTGAGCTATGGGTCTGCTGCTGAAAATAAGGATGAGTTTTCCATCTCAAAATCTTCGACTGAAATAGATTCTGACTTGAACTTGCTTCGCCCACGCCAGAGCTATACTATGAAAGCAGGAAATACATTGGATGATGTTAGGAATCATCATCCGATTCTGTTAGCACAGTGGCAGGAAGGA GTTACACGCTCTGATTTGACCGAAGGGTTCTCTTTTGAGGAATTCATAAAGCGTGGTGGAAATCTTGCTATGCTTGCTGAACGCTTTCTACATG AGGTGGCATTTAAGCTCTGGAAAGCTCCTAAATATGGAGCTTAAATCTGCCTGAGAAGATCCTCTCTAAATAAGGCGCGAAAATAATAAAAAGAGAATGATCTGTTGGGTTCCTTCTGTAAATGGGAACTGCAGATATTGCAAATAGATGAGTTTTGGAGGAGACGTACTCTCCCAAGGTTACAGAATTGATAAAGGAGATGCTGATAAACTGAAAACTAGTACGGTTTTTACTGAATTGATGGGAGATTTGTACTGTGCTTATCCGATGCTTTTGAACGGAGGAACTTTCCTGAGCTTATGTGAAAC GCCGTTGCTGTTTGTGTAGAATCCATTTACTTGAAACTTTCTAACTTGGGAGCTGT ]
[+] EMBL CF324780 [ gGGCGGACAAGCCGAGCCGCGGGCTGGTGCTCTACGCCGCGGGGCACGCGGCGCTGCTCCCTCCGGCGAGCGGCGGCGGCGGCGGAGCCG ]
[+] EMBL AU065263 [ ACTGCAACTAGCAGTTCCCAAGCTATCTGAGAGGTTTATGGGGATCAGAGCTGCCATGGTCACCAATTGCCCCCTTGTTAGTTCTTTTGCAGCAAATCTTGGTTTTCATGTATCCGGGACTGAAGATTTAGTTGCACAATCTGGATCTTCCGCTGCTTCTAAGGAGGCTGGAATTATTTCCCAGGCGTTAAGTCTGCTTGGATTTTCAGAGGGGAATGTTCAGGAGACATCTGAATTTGATCTGGTGTTTCTGCATGTTGCCATGGAGAATACAAACAGCAAGTTGGGAAAATTGGGAATGAAGACTGATCTAAATCGGCTTGATAAATTAGTTGGTGCAATCATGGAAGCGGCGCCCATAAGTTCAGCTATCGCCTCCCGTATTCTTGTATCTGTGATGTTGAGCTATGGGTCTGCTGCTGAAAATAAGGATGAGTTTTCCATCTCAAAATCTTCGACTGAAATAGATTCTGACTTGAACTTGCTTCGCCCACGCCAGAGCTATACTATGAAAGCAGGAAATACATTGGATGATGTTAGGAATCATCATCCGATTCTGTTAGCACAGTGGCAGGAAGGANGTTACACGCTCTGATTTGACCGAA GGTTCTCTTTTGAGGAATTCATAAAGCGTGGTGGAAATCNTGCTATGCTTGCTGAANGCTTTCTACATGAAGGTGGCATTT ]
[-] EMBL CB658101 [ TTGATCTGGTGTTTCTGCATGTTGCCATGGAGAATACAAACAGCAAGTTGGGAAAATTGGGAATGAAGACTGATCTAAATCGGCTTGATAAATTAGTTGGTGCAATCATGGAAGCGGCGCCCATAAGTTCAGCTATCGCCTCCCGTATTCTTGTATCTGTGATGTTGAGCTATGGGTCTGCTGCTGAAAATAAGGATGAGTTTTCCATCTCAAAATCTTCGACTGAAATAGATTCTGACTTGAACTTGCTTCGCCCACGCCAGAGCTATACTATGAAAGCAGGAAATACATTGGATGATGTTAGGAATCATCATCCGATTCTGTTAGCACAGTGGCAGGAAGGA GTTACACGCTCTGATTTGACCGAAGGGTTCTCTTTTGAGGAATTCATAAAGCGTGGTGGAAATCTTGCTATGCTTGCTGAACGCTTTCTACATG AGGTGGCATTTAAGCTCTGGAAAGCTCCTAAATATGGAGCTTAAATCTGCCTGAGAAGATCCTCTCTAAATAAGGCGCGAAAATAATAAAAAGAGAATGATCTGTTGGGTTCCTTCTGTAAATGGGAACTGCAGATATTGCAAATAGATGAGTTTTGGAGGAGACGTACTCTCCCAAGGTTACAGAATTGATAAAGGAGATGCTGATAAACTGAAAACTAGTACGGTTTTTACTGAATTGATGGGAGATTTGTACTGTGCTTATCCGATGCTTTTGAACGGAGGAACTTTCCTGAGCTTATGTGAAACGGCCGTTGCTGTTTGTGTAGAATCCATTTAC TGAAAaaaaaaga ]
[+] EMBL CB096357 [ GATGTTGAGCTATGGGTCTGCTGCTGAAAATAAGGATGAGTTTTCCATCTCAAAATCTTCGACTGAAATAGATTCTGACTTGAACTTGCTTCGCCCACGCCAGAGCTATACTATGAAAGCAGGAAATACATTGGATGATGTTAGGAATCATCATCCGATTCTGTTAGCACAGTGGCAGGAAGGA GTTACACGCTCTGATTTGACCGAAGGGTTCTCTTTTGAGGAATTCATAAAGCGTGGTGGAAATCTTGCTATGCTTGCTGAACGCTTTCTACATG AGGTGGCATTTAAGCTCTGGAAAGCTCCTAAATATGGAGCTTAAATCTGCCTGAGAAGATCCTCTCTAAATAAGGCGCGAAAATAATAAAAAGAGAATGATCTGTTGGGTTCCTTCTGTAAATGGGAACTGCAGATATTGCAAATAGATGAGTTTTGGAGGAGACGTACTCTCCCAAGGTTACAGAATTGATAAAGGAGATGCTGATAAACTGAAAACTAGTACGGTTTTTACTGAATTGATGGGAGATTTGTACTGTGCTTATCCGATGCTTTTGAACGGAGGAACTTTCCTGAGCTTATGTGAAAC GCCGTTGCTGTTTGTGTA ]
[+] EMBL AU095254 [ AATAAGGCGCGAAAATAATAAAAAGAGAATGATCTGTTGGGTTCCTTCTGTAAATGGGAACTGCAGATATTGCAAATAGATGAGTTTTGGAGGAGACGTACTCTCCCAAGGTTACAGAATTGATAAAGGAGATGCTGATAAACTGAAAACTAGTACGGTTTTTACTGAATTGATGGGAGATTTGTACTGTGCTTATCCGATGCTTTTGAACGGAGGAACTTTCCTGAGCTTATGTGAAAC GCCGTTGCTGTTTGTGTAGAATCCATTTACTTGAAACTTTCTAACTTGGGAGCTGTTTCAGCACTGATATCAGTATCTGACTGATGCCATCCCTAGATCATTGTAATTTAATTCTTGATGCTAGCTAGCTGGTCCTAAAAATCGTGTGGCTGGAGCCTC TTTTTTCTTTTAATAAGAACAGTACTACTAATAGAATTGATTCTAGAGAAAAAA ]
[+] EMBL AA750445 [ AGAGAATGATCTGTTGGGTTCCTTCTGTAAATGGGAACTGCAGATATTGCAAATAGATGAGTTTTGGAGGAGACGTACTCTCCCAAGGTTACAGAATTGATAAAGGAGATGCTGATAAACTGAAAACTAGTACGGTTTTTACTGAATTGATGGGAGATTTGTACTGTGCTTATCCGATGCTTTTGAACGGAGGAACTTTCCTGAGCTTATGTGAAAC GCCGTTG ]
[+] EMBL CA757667 [ gAAAGGAGATGCTGATAAACTGAAAACTAGTACGGTTTTTACTGAATTGATGGGAGATTTGTACTGTGCTTATCCGATGCTTTTGAACGGAGGAACTTTCCTGAGCTTATGTGAAAC GCCGTTGCTGTTTGTGTAGAATCCATTTACTTGAGACTTTCTAACTTGGGAGCTGTTTCAGCACTGATATCAGTATCTGACTGATGCCATCCCTAGATCATTGTAATTTAATTCTTGATGCTAGCTAGCTGGTCCTAAAAATCGTGTGGCTGGAGCCTCTTTTTTTCTTTTAATAAGAACAGTACTACTAATAGAATTGATTCTAGAGAATAATAAAAGGCAGCCATCCAGCTCCCTATCACTA]
consensusID : consensus_11517#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 660 fasta sequence
[AATCCCTTGGATGAGTTAGATATCATCCGATTTCTGTGTANCACAGTGGCATGAAAGAGTTACACGCTCTGATTTGACCGAAAGGGTTCTCTTTGGAGGAATTCATNAAAGCGTGGTGGGAANTCTTGCTAATGCTTGGCTTGAACCGCTTTNCTAACAATGAGGGTGGCACTTTTAAGCTTCTGGAAAGCTCCCTATAATATTGGAGCTAAATCTGCCTGAGAAGATCCTCTCTAAATAAGGCGCGATATAATAATAAAGAGAATGATCTGTTTGGGTTCCTTCTGTAAATGGGAACTGCAGATATTTGCAAATAGATGAGTTTTGGAGGAGACGTACTCTCCCAAGGTTACAGAGATTGATAAAGGAGATGCTGATAAACTGAAAACTAGTACGGTTTTTACTGAATTGATGGGAGATTTGTACTGTGCTTATCCGAGTGCTTTTGAACGGAGGAACTTTCCTGAGCTTATGTGAAACGCCGTTGCTGTTTGTGTAGAATCCATTTACTTGAAACTTTCTAACTTGGGAGCTGTTTCAGCACTGATATCAGTATCTGGACNGANGCCATCCCTAGATCATTGTAATTTAATTCTTGATGCTAGCTAGCTGGTCGCNANAGATGCGGGTGGCTGGAGCCTCGTTTTTTCTTTTAAAAAA]
[+] EMBL BQ908383 [AATCCCTTGGATGAGTTAGATATCATCCGATTTCTGTGTANCACAGTGGCATGAAAGAGTTACACGCTCTGATTTGACCGAAAGGGTTCTCTTTGGAGGAATTCATNAAAGCGTGGTGGGAANTCTTGCTAATGCTTGGCTTGAACCGCTTTNCTAACAATGAGGGTGGCACTTTTAAGCTTCTGGAAAGCTCCCTATAATATTGGAGCTAAATCTGCCTGAGAAGATCCTCTCTAAATAAGGCGCGATATAATAATAAAGAGAATGATCTGTTTGGGTTCCTTCTGTAAATGGGAACTGCAGATATTTGCAAATAGATGAGTTTTGGAGGAGACGTACTCTCCCAAGGTTACAGAGATTGATAAAGGAGATGCTGATAAACTGAAAACTAGTACGGTTTTTACTGAATTGATGGGAGATTTGTACTGTGCTTATCCGAGTGCTTTTGAACGGAGGAACTTTCCTGAGCTTATGTGAAACGCCGTTGCTGTTTGTGTAGAATCCATTTACTTGAAACTTTCTAACTTGGGAGCTGTTTCAGCACTGATATCAGTATCTGGACNGANGCCATCCCTAGATCATTGTAATTTAATTCTTGATGCTAGCTAGCTGGTCGCNANAGATGCGGGTGGCTGGAGCCTCGTTTTTTCTTTTAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11517#0 CAATGGCGGACAAGCCGAGCCGCGGGCTGGTGCTCTACGCCGCGGGGCACGCGGCGCTGC 60
consensus_11517#1 ------------------------------------------------------------
consensus_11517#0 TCCCTCCGGCGAGCGGCGGCGGCGGCGGAGCCGGAGGAGGAGGGGGAGGGAGCCACCTCG 120
consensus_11517#1 ------------------------------------------------------------
consensus_11517#0 ACGCCTTCGCGTCTCTCGCGTCATGTGGCTTCCTCTCCCTCCGCTCGCCCCCTCTCGCGA 180
consensus_11517#1 ------------------------------------------------------------
consensus_11517#0 GTGGGGAGGAGAAGCGTGACAGCACGATTCTTGAGCTCGCGCAGCTGCTCGACGTGTACG 240
consensus_11517#1 ------------------------------------------------------------
consensus_11517#0 ATGATCTCTTCCCTGCTAAGACTGAGAAAACTGGTCAAGAGACTGCCCAGGTGGATCCAC 300
consensus_11517#1 ------------------------------------------------------------
consensus_11517#0 TGCAACTAGCAGTTCCCAAGCTATCTGAGAGGTTTATGGGGATCAGAGCTGCCATGGTCA 360
consensus_11517#1 ------------------------------------------------------------
consensus_11517#0 CCAATTGCCCCCTTGTTAGTTCTTTTGCAGCAAATCTTGGTTTTCATGTATCCGGGACTG 420
consensus_11517#1 ------------------------------------------------------------
consensus_11517#0 AAGATTTAGTTGCACAATCTGGATCTTCCGCTGCTTCTAAGGAGGCTGGAATTATTTCCC 480
consensus_11517#1 ------------------------------------------------------------
consensus_11517#0 AGGCGTTAAGTCTGCTTGGATTTTCAGAGGGGAATGTTCAGGAGACATCTGAATTTGATC 540
consensus_11517#1 ------------------------------------------------------------
consensus_11517#0 TGGTGTTTCTGCATGTTGCCATGGAGAATACAAACAGCAAGTTGGGAAAATTGGGAATGA 600
consensus_11517#1 ------------------------------------------------------------
consensus_11517#0 AGACTGATCTAAATCGGCTTGATAAATTAGTTGGTGCAATCATGGAAGCGGCGCCCATAA 660
consensus_11517#1 ------------------------------------------------------------
consensus_11517#0 GTTCAGCTATCGCCTCCCGTATTCTTGTATCTGTGATGTTGAGCTATGGGTCTGCTGCTG 720
consensus_11517#1 ------------------------------------------------------------
consensus_11517#0 AAAATAAGGATGAGTTTTCCATCTCAAAATCTTCGACTGAAATAGATTCTGACTTGAACT 780
consensus_11517#1 ------------------------------------------------------------
consensus_11517#0 TGCTTCGCCCACGCCAGAGCTATACTATGAAAGCAGGAAATACATTGGATGATGTTAGGA 840
consensus_11517#1 --------------------------------------AATCCCTTGGATGA-GTTAGAT 21
*** * ******** *****
consensus_11517#0 ATCATCATCCGATTCTGT-TAGCACAGTGGCAGGAAGGAGTTACACGCTCTGATTTGACC 899
consensus_11517#1 ATCATC--CGATTTCTGTGTANCACAGTGGCATGAAAGAGTTACACGCTCTGATTTGACC 79
****** * ****** ** ********** *** ***********************
consensus_11517#0 GAA-GGGTTCTCTTTTGAGGAATTCATAAA-GCGTGGTGG-AAATCTTGCTA-TGCTTG- 954
consensus_11517#1 GAAAGGGTTCTCTTTGGAGGAATTCATNAAAGCGTGGTGGGAANTCTTGCTAATGCTTGG 139
*** *********** *********** ** ********* ** ******** ******
consensus_11517#0 -CTGAAC-GCTTTCTACATGA----GGTGGCA--TTTAAGCT-CTGGAAAGCTCCTAA-- 1003
consensus_11517#1 CTTGAACCGCTTTNCTAACAATGAGGGTGGCACTTTTAAGCTTCTGGAAAGCTCCCTATA 199
***** ***** * * ******* ******** ************ *
consensus_11517#0 ATATGGAGCTTAAATCTGCCTGAGAAGATCCTCTCTAAATAAGGCGCGAAAATAATAA-A 1062
consensus_11517#1 ATATTGGAGCTAAATCTGCCTGAGAAGATCCTCTCTAAATAAGGCGCGATA-TAATAATA 258
**** * *************************************** * ****** *
consensus_11517#0 AAGAGAATGATCTGTT-GGGTTCCTTCTGTAAATGGGAACTGCAGATATT-GCAAATAGA 1120
consensus_11517#1 AAGAGAATGATCTGTTTGGGTTCCTTCTGTAAATGGGAACTGCAGATATTTGCAAATAGA 318
**************** ********************************* *********
consensus_11517#0 TGAGTTTTGGAGGAGACGTACTCTCCCAAGGTTACAGA-ATTGATAAAGGAGATGCTGAT 1179
consensus_11517#1 TGAGTTTTGGAGGAGACGTACTCTCCCAAGGTTACAGAGATTGATAAAGGAGATGCTGAT 378
************************************** *********************
consensus_11517#0 AAACTGAAAACTAGTACGGTTTTTACTGAATTGATGGGAGATTTGTACTGTGCTTATCCG 1239
consensus_11517#1 AAACTGAAAACTAGTACGGTTTTTACTGAATTGATGGGAGATTTGTACTGTGCTTATCCG 438
************************************************************
consensus_11517#0 A-TGCTTTTGAACGGAGGAACTTTCCTGAGCTTATGTGAAACGCCGTTGCTGTTTGTGTA 1298
consensus_11517#1 AGTGCTTTTGAACGGAGGAACTTTCCTGAGCTTATGTGAAACGCCGTTGCTGTTTGTGTA 498
* **********************************************************
consensus_11517#0 GAATCCATTTACTTGAAACTTTCTAACTTGGGAGCTGTTTCAGCACTGATATCAGTATCT 1358
consensus_11517#1 GAATCCATTTACTTGAAACTTTCTAACTTGGGAGCTGTTTCAGCACTGATATCAGTATCT 558
************************************************************
consensus_11517#0 G-ACTGATGCCATCCCTAGATCATTGTAATTTAATTCTTGATGCTAGCTAGCTGGTC-CT 1416
consensus_11517#1 GGACNGANGCCATCCCTAGATCATTGTAATTTAATTCTTGATGCTAGCTAGCTGGTCGCN 618
* ** ** ************************************************* *
consensus_11517#0 AAAAAT-CGTGTGGCTGGAGCCTC-TTTTTTCTTTTAATAAGAACAGTACTACTAATAGA 1474
consensus_11517#1 ANAGATGCGGGTGGCTGGAGCCTCGTTTTTTCTTTTAAAAAA------------------ 660
* * ** ** ************** ************* **
consensus_11517#0 ATTGATTCTAGAGAAAAAAAAAAGGCAGCCATCCAGCTCCCTATCACTA 1523
consensus_11517#1 -------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||