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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11559#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1377 fasta sequence
[GACCCCACCGTATCCCACACCTCGCTCACCTCACTGCCCTCGCTTTCGTCCCCCGCATCCGCACCTCGTCCTTCGCCAATTCGCCATGCCGTCGCTCGCCACGGCCGCGGCCGCGGGAGCGGGAGCGCCTCTCCGCCGCGGCCCGTGCGCACCACGCCGCCAATCCGCGCACGCCTCCTCCTCCTCCTCCTCCTCCCTCCCCTCCCCCGCGCTCGCCACGTCCACGCGCTTCGCCGCCACCGCCCCCATCCTGCGGCTCGTCCAACGAAGGCCAAGAGCGCCTCTGACGGCGGCAAGAGCGGCGAGCCCCGACGCCGCCACGGGGGCGCGATCGCCCTCCTCCGGCGGCCAGATGCTGGTGTTCGTGCCGCCGCACCCGCTGATAAAGCACTGGGTCTCCGTCCTGCGCAACGAGCAGACGCCCTGCGCCATCTTCAAGAGTGCCATGGCGGAGCTTGGTCGGTTGCTTATATATGAAGCTTCCAGAGATTGGCTGCCAACAATCACAGGAGAGATCCAAACACCTGTAGCTGTTTCAAGTGTTGAATTTATTGACCCAAGAGAGCCTGTCATGGTTGTTCCGATACTAAGAGCTGGTCTTGCTATGGCTGAAAATGCTTCATCAGTTCTACCAGCCACCAAGACTTATCACCTTGGCCTGCGTAGGGATGAAGAAACACTTCAACCTTCGATATATCTGAACAACTTGCCAGACAAGATTCCAGAGGGGACTCGTGTGCTAGTTGTTGATCCAATGCTGGCCACTGGTGGGACAATTGTTGCT-GCTATTGACTTGTTGGTTGAACGTGGAGTTACAAGCAAGCAGATTAAAGTCGTTTCTGCTGTTGCAGCGCCTCCTGCGCTTCAAAAGCTCAGCAACAAATTCCCTGGGCTTCATGTGTACACGGGAACAATTGATTCTGAAGTTGATGAGAGAGGGTTCATAGTTCCGGGGTTGGGAGATGCCGGCGATAGAAGCTTCGCGACTTAACTATGCTAATTATCGCAGCTGCTGTTCTACCTCCACGAGAGGGATTGGCGTAAGCTGAAATTTCCGAGGATTCGAGCGCTTTTGACTTGGGAGTCAGGAACAGTCGAGTTCACGTTCACCTGTAGATTGCCTCGTTCGAGATTCTCCCTTCGGAACTTATCGTTTTGTAATTATCCATTTTGTGTTGTCATGTTGAATATAGGATTAGTTCACGTCCATCCACGTTTACAATTTGTTGGGAATATGCATGTTTAATGTTTTCAATTATATCTTACAGATTTCTTGATACTCCATGGGAAAAAATGTTGACGATGCCTTTTCCAATCAGAGTAATAAAGCAATGTGCAAGGCAGTACTGTTGGTGTGTCGAAAAAAAAAAAAAAAAA]
[+] EMBL AK060610 [GACCCCACCGTATCCCACACCTCGCTCACCTCACTGCCCTCGCTTTCGTCCCCCGCATCCGCACCTCGTCCTTCGCCAATTCGCCATGCCGTCGCTCGCCACGGCCGCGGCCGCGGGAGCGGGAGCGCCTCTCCGCCGCGGCCCGTGCGCACCACGCCGCCAATCCGCGCACGCCTCCTCCTCCTCCTCCTCCTCCCTCCCCTCCCCCGCGCTCGCCACGTCCACGCGCTTCGCCGCCACCGCCCCCATCCTGCGGCTCGTCCAACGAAGGCCAAGAGCGCCTCTGACGGCGGCAAGAGCGGCGAGCCCCGACGCCGCCACGGGGGCGCGATCGCCCTCCTCCGGCGGCCAGATGCTGGTGTTCGTGCCGCCGCACCCGCTGATAAAGCACTGGGTCTCCGTCCTGCGCAACGAGCAGACGCCCTGCGCCATCTTCAAGAGTGCCATGGCGGAGCTTGGTCGGTTGCTTATATATGAAGCTTCCAGAGATTGGCTGCCAACAATCACAGGAGAGATCCAAACACCTGTAGCTGTTTCAAGTGTTGAATTTATTGACCCAAGAGAGCCTGTCATGGTTGTTCCGATACTAAGAGCTGGTCTTGCTATGGCTGAAAATGCTTCATCAGTTCTACCAGCCACCAAGACTTATCACCTTGGCCTGCGTAGGGATGAAGAAACACTTCAACCTTCGATATATCTGAACAACTTGCCAGACAAGATTCCAGAGGGGACTCGTGTGCTAGTTGTTGATCCAATGCTGGCCACTGGTGGGACAATTGTTGCT GCTATTGACTTGTTGGTTGAACGTGGAGTTACAAGCAAGCAGATTAAAGTCGTTTCTGCTGTTGCAGCGCCTCCTGCGCTTCAAAAGCTCAGCAACAAATTCCCTGGGCTTCATGTGTACACGGGAACAATTGATTCTGAAGTTGATGAGAGAGGGTTCATAGTTCCGGGGTTGGGAGATGCCGGCGATAGAAGCTTCGCGACTTAACTATGCTAATTATCGCAGCTGCTGTTCTACCTCCACGAGAGGGATTGGCGTAAGCTGAAATTTCCGAGGATTCGAGCGCTTTTGACTTGGGAGTCAGGAACAGTCGAGTTCACGTTCACCTGTAGATTGCCTCGTTCGAGATTCTCCCTTCGGAACTTATCGTTTTGTAATTATCCATTTTGTGTTGTCATGTTGAATATAGGATTAGTTCACGTCCATCCACGTTTACAATTTGTTGGGAATATGCATGTTTAATGTTTTCAATTATATCTTACAG ]
[+] EMBL AK099158 [ CACCTCACTGCCCTCGCTTTCGTCCCCCGCATCCGCACCTCGTCCTTCGCCAATTCGCCATGCCGTCGCTCGCCACGGCCGCGGCCGCGGGAGCGGGAGCGCCTCTCCGCCGCGGCCCGTGCGCACCACGCCGCCAATCCGCGCACGCCTCCTCCTCCTCCTCCTCCTCCCTCCCCTCCCCCGCGCTCGCCACGTCCACGCGCTTCGCCGCCACCGCCCCCATCCTGCGGCTCGTCCAACGAAGGCCAAGAGCGCCTCTGACGGCGGCAAGAGCGGCGAGCCCCGACGCCGCCACGGGGGCGCGATCGCCCTCCTCCGGCGGCCAGATGCTGGTGTTCGTGCCGCCGCACCCGCTGATAAAGCACTGGGTCTCCGTCCTGCGCAACGAGCAGACGCCCTGCGCCATCTTCAAGAGTGCCATGGCGGAGCTTGGTCGGTTGCTTATATATGAAGCTTCCAGAGATTGGCTGCCAACAATCACAGGAGAGATCCAAACACCTGTAGCTGTTTCAAGTGTTGAATTTATTGACCCAAGAGAGCCTGTCATGGTTGTTCCGATACTAAGAGCTGGTCTTGCTATGGCTGAAAATGCTTCATCAGTTCTACCAGCCACCAAGACTTATCACCTTGGCCTGCGTAGGGATGAAGAAACACTTCAACCTTCGATATATCTGAACAACTTGCCAGACAAGATTCCAGAGGGGACTCGTGTGCTAGTTGTTGATCCAATGCTGGCCACTGGTGGGACAATTGTTGCT GCTATTGACTTGTTGGTTGAACGTGGAGTTACAAGCAAGCAGATTAAAGTCGTTTCTGCTGTTGCAGCGCCTCCTGCGCTTCAAAAGCTCAGCAACAAATTCCCTGGGCTTCATGTGTACACGGGAACAATTGATTCTGAAGTTGATGAGAGAGGGTTCATAGTTCCGGGGTTGGGAGATGCCGGCGATAGAAGCTTCGCGACTTAACTATGCTAATTATCGCAGCTGCTGTTCTACCTCCACGAGAGGGATTGGCGTAAGCTGAAATTTCCGAGGATTCGAGCGCTTTTGACTTGGGAGTCAGGAACGGTCGAGTTCACGTTCACCTGTAGATTGCCTCGTTCGAGATTCTCCCTTCGGAACTTATCGTTTTGTAATTATCCATTTTGTGTTGTCATGTTGAATATAGGATTAGTTCACGTCCATCCACGTTTACAATTTGTTGGGAATATGCATGTTTAATGTTTTCAATTATATCTTACAGATTTCTTGATACTCCATGGGAAAAAATGTTGACGATGCCTTTTCCAATCAGAGTAATAAAGCAAT ]
[+] EMBL AK070824 [ CACCTCACTGCCCTCGCTTTCGTCCCCCGCATCCGCACCTCGTCCTTCGCCAATTCGCCATGCCGTCGCTCGCCACGGCCGCGGCCGCGGGAGCGGGAGCGCCTCTCCGCCGCGGCCCGTGCGCACCACGCCGCCAATCCGCGCACGCCTCCTCCTCCTCCTCCTCCTCCCTCCCCTCCCCCGCGCTCGCCACGTCCACGCGCTTCGCCGCCACCGCCCCCATCCTGCGGCTCGTCCAACGAAGGCCAAGAGCGCCTCTGACGGCGGCAAGAGCGGCGAGCCCCGACGCCGCCACGGGGGCGCGATCGCCCTCCTCCGGCGGCCAGATGCTGGTGTTCGTGCCGCCGCACCCGCTGATAAAGCACTGGGTCTCCGTCCTGCGCAACGAGCAGACGCCCTGCGCCATCTTCAAGAGTGCCATGGCGGAGCTTGGTCGGTTGCTTATATATGAAGCTTCCAGAGATTGGCTGCCAACAATCACAGGAGAGATCCAAACACCTGTAGCTGTTTCAAGTGTTGAATTTATTGACCCAAGAGAGCCTGTCATGGTTGTTCCGATACTAAGAGCTGGTCTTGCTATGGCTGAAAATGCTTCATCAGTTCTACCAGCCACCAAGACTTATCACCTTGGCCTGCGTAGGGATGAAGAAACACTTCAACCTTCGATATATCTGAACAACTTGCCAGACAAGATTCCAGAGGGGACTCGTGTGCTAGTTGTTGATCCAATGCTGGCCACTGGTGGGACAATTGTTGCT GCTATTGACTTGTTGGTTGAACGTGGAGTTACAAGCAAGCAGATTAAAGTCGTTTCTGCTGTTGCAGCGCCTCCTGCGCTTCAAAAGCTCAGCAACAAATTCCCTGGGCTTCATGTGTACACGGGAACAATTGATTCTGAAGTTGATGAGAGAGGGTTCATAGTTCCGGGGTTGGGAGATGCCGGCGATAGAAGCTTCGCGACTTAACTATGCTAATTATCGCAGCTGCTGTTCTACCTCCACGAGAGGGATTGGCGTAAGCTGAAATTTCCGAGGATTCGAGCGCTTTTGACTTGGGAGTCAGGAACGGTCGAGTTCACGTTCACCTGTAGATTGCCTCGTTCGAGATTCTCCCTTCGGAACTTATCGTTTTGTAATTATCCATTTTGTGTTGTCATGTTGAATATAGGATTAGTTCACGTCCATCCACGTTTACAATTTGTTGGGAATATGCATGTTTAATGTTTTCAATTATATCTTACAGATTTCTTGATACTCCATGGGAAAAAATGTTGACGATGCCTTTTCCAATCAGAGTAATAAAGCAAT ]
[+] EMBL AU094471 [ AGCGCCTCTCCGCCGCGGCCCGTGCGCACCACGCCGCCAATCCGCGCACGCCTCCTCCTCCTCCTCCTCCTCCCTCCCCTCCCCCGCGCTCGCCACGTCCACGCGCTTCGCCGCCACCGCCCCCATCCTGCGGCTCGTCCAACGAAGGCCAAGAGCGCCTCTGACGGCGGCAAGAGCGGCGAGCCCCGACGCCGCCACGGGGGCGCGATCGCCCTCCTCCGGCGGCCAGATGCTGGTGTTCGTGCCGCCGCACCCGCTGATAAAGCACTGGGTCTCCGTCCTGCGCAACGAGCAGACGCCCTGCGCCATCTTCAAGAGTGCCATGGCGGAG TTGGTCGGTTGCTTATATATGAAGCTTCCAGAGATTGGCTGCCAACAATCACAGGAGAGATCCAAACACCTGTAGCTGTTTCAAGTGTTGAATTTATTGACCCAAGAGAGCCTGTCATGGTTGTTCCGATACTAAGAGCTGGTCTTGCTATG ]
[+] EMBL AU068574 [ GCTCGCCACGTCCACGCGCTTCGCCGCCACCGCCCCCATCCTGCGGCTCGTCCAACGAAGGCCAAGAGCGCCTCTGACGGCGGCAAGAGCGGCGANCCCCGACGCCGCCACGGGGGCGCGATCGCCCTCCTCCGGCGGCCAGATGCTGGTGTTCGTGCCGCCGCACCCGCTGATAAAGCACTGGGTCT ]
[+] EMBL BI805656 [ GTTG TGATCCAATGCTGCCCACT GTGGGACAATTGTTGCTGGCTATTGACTT TT GTTGAACGTGGAGTTACAACCAAGCAGATTAAAGTCGTTTCTGCTGTT CAGCGCCTCCTGCGCTTCAAAAGCTCAGCAAACAATTCCCTGGGCTTCATGTGTACACGGGAACCATTGATTCTGAAGTTGATGAGAGAGGGTTCATAGTTCCGGGGTTGGGAGATCCCGGCGATAGAAGCTTCGCGACTTAACTATGCTAATTATCGCAGCTGCTGTTCTACCTCCACGAGAGGGATTGGCGTAAGCTGAAATTTCCGAGGATTCGAGCGCTTTTGACTTGGGAGTCAGGAACAGTCGAGTTCACGTTCACCTGTAGATTGCCTCGTTCGAGATTCTCCCTTCGGAACTTATCGTTTTGTAATTATCCATTTTGTGTTGTCATGTTGAATATAGGATTAGTTCACGTCCATCCACGTTTAC ATTTGTTGGGAATATGCATGTTTAATGTTTTCAATTATATCTTACAGATTTCTTGATACTCCATGGGAAAAAATGTTGACGATGCCTTTTCC ATCAGAGTAATAAA CAATGTGCAA ]
[+] EMBL C99393 [ ATTCTCCCTTCGGAACTTATCGTTTTGTAATTATCCATTTTGTGTTGTCATGTTGAATATAGGATTGGTTCACGTCCATCCACGTTTACAATTTGTTGGGAATATGCATGTTTAATGTTTTCAATTATATCTTACAGATTTCTTGATACTCCATGGGAAAAAATGTTGACGATGCCTTTTCCAATCAGAGTAATAAAGCAATGTGCAAGGCAGTACTGTTGGTGTGTCGAAAAAAAAAAAAAAAAA]
consensusID : consensus_11559#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 356 fasta sequence
[CCGAGGATGTGCGAGCGCTTGTTGACTGTGGGAGTCTAGGAACAGTGCGAGTTCTACGTTCACCTGTAGATTGCCTTCGTTGCGAGATTCTCCCTGTCGGAACTTATCGTGTTTGTAATTATCCATTGTTGTGTTGTCAGTGTTGAATATAGATGTAGTGTCACGTCCAGCGCACGTTTACTATTTGTTGGGAATATGCATGTTTAATGTTTTCAATTATATCTTACAGATTTCTTGATACNCCATGGGAAAAAATNTTGNCGATGCCTTTTCCAATCNGNGTAATAAAGCAATNTGCAAGGCAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL BU672937 [CCGAGGATGTGCGAGCGCTTGTTGACTGTGGGAGTCTAGGAACAGTGCGAGTTCTACGTTCACCTGTAGATTGCCTTCGTTGCGAGATTCTCCCTGTCGGAACTTATCGTGTTTGTAATTATCCATTGTTGTGTTGTCAGTGTTGAATATAGATGTAGTGTCACGTCCAGCGCACGTTTACTATTTGTTGGGAATATGCATGTTTAATGTTTTCAATTATATCTTACAGATTTCT ]
[+] EMBL AU068573 [ TTTNTTGGGAATATGCATGTTTAATGTTTTCAATTATNTCTTACAGATTTCTTGATACNCCATGGGAAAAAATNTTGNCGATGCCTTTTCCAATCNGNGTAATAAAGCAATNTGCAAGGCAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11559#0 GACCCCACCGTATCCCACACCTCGCTCACCTCACTGCCCTCGCTTTCGTCCCCCGCATCC 60
consensus_11559#1 ------------------------------------------------------------
consensus_11559#0 GCACCTCGTCCTTCGCCAATTCGCCATGCCGTCGCTCGCCACGGCCGCGGCCGCGGGAGC 120
consensus_11559#1 ------------------------------------------------------------
consensus_11559#0 GGGAGCGCCTCTCCGCCGCGGCCCGTGCGCACCACGCCGCCAATCCGCGCACGCCTCCTC 180
consensus_11559#1 ------------------------------------------------------------
consensus_11559#0 CTCCTCCTCCTCCTCCCTCCCCTCCCCCGCGCTCGCCACGTCCACGCGCTTCGCCGCCAC 240
consensus_11559#1 ------------------------------------------------------------
consensus_11559#0 CGCCCCCATCCTGCGGCTCGTCCAACGAAGGCCAAGAGCGCCTCTGACGGCGGCAAGAGC 300
consensus_11559#1 ------------------------------------------------------------
consensus_11559#0 GGCGAGCCCCGACGCCGCCACGGGGGCGCGATCGCCCTCCTCCGGCGGCCAGATGCTGGT 360
consensus_11559#1 ------------------------------------------------------------
consensus_11559#0 GTTCGTGCCGCCGCACCCGCTGATAAAGCACTGGGTCTCCGTCCTGCGCAACGAGCAGAC 420
consensus_11559#1 ------------------------------------------------------------
consensus_11559#0 GCCCTGCGCCATCTTCAAGAGTGCCATGGCGGAGCTTGGTCGGTTGCTTATATATGAAGC 480
consensus_11559#1 ------------------------------------------------------------
consensus_11559#0 TTCCAGAGATTGGCTGCCAACAATCACAGGAGAGATCCAAACACCTGTAGCTGTTTCAAG 540
consensus_11559#1 ------------------------------------------------------------
consensus_11559#0 TGTTGAATTTATTGACCCAAGAGAGCCTGTCATGGTTGTTCCGATACTAAGAGCTGGTCT 600
consensus_11559#1 ------------------------------------------------------------
consensus_11559#0 TGCTATGGCTGAAAATGCTTCATCAGTTCTACCAGCCACCAAGACTTATCACCTTGGCCT 660
consensus_11559#1 ------------------------------------------------------------
consensus_11559#0 GCGTAGGGATGAAGAAACACTTCAACCTTCGATATATCTGAACAACTTGCCAGACAAGAT 720
consensus_11559#1 ------------------------------------------------------------
consensus_11559#0 TCCAGAGGGGACTCGTGTGCTAGTTGTTGATCCAATGCTGGCCACTGGTGGGACAATTGT 780
consensus_11559#1 ------------------------------------------------------------
consensus_11559#0 TGCTGCTATTGACTTGTTGGTTGAACGTGGAGTTACAAGCAAGCAGATTAAAGTCGTTTC 840
consensus_11559#1 ------------------------------------------------------------
consensus_11559#0 TGCTGTTGCAGCGCCTCCTGCGCTTCAAAAGCTCAGCAACAAATTCCCTGGGCTTCATGT 900
consensus_11559#1 ------------------------------------------------------------
consensus_11559#0 GTACACGGGAACAATTGATTCTGAAGTTGATGAGAGAGGGTTCATAGTTCCGGGGTTGGG 960
consensus_11559#1 ------------------------------------------------------------
consensus_11559#0 AGATGCCGGCGATAGAAGCTTCGCGACTTAACTATGCTAATTATCGCAGCTGCTGTTCTA 1020
consensus_11559#1 ------------------------------------------------------------
consensus_11559#0 CCTCCACGAGAGGGATTGGCGTAAGCTGAAATTTCCGAGGATT--CGAGCGCTT-TTGAC 1077
consensus_11559#1 ----------------------------------CCGAGGATGTGCGAGCGCTTGTTGAC 26
******** ********* *****
consensus_11559#0 T-TGGGAGTC-AGGAACAGT-CGAGTTC-ACGTTCACCTGTAGATTGCCT-CGTT-CGAG 1131
consensus_11559#1 TGTGGGAGTCTAGGAACAGTGCGAGTTCTACGTTCACCTGTAGATTGCCTTCGTTGCGAG 86
* ******** ********* ******* ********************* **** ****
consensus_11559#0 ATTCTCCCT-TCGGAACTTATCGT-TTTGTAATTATCCATT-TTGTGTTGTCA-TGTTGA 1187
consensus_11559#1 ATTCTCCCTGTCGGAACTTATCGTGTTTGTAATTATCCATTGTTGTGTTGTCAGTGTTGA 146
********* ************** **************** *********** ******
consensus_11559#0 ATATAGGATTAGT-TCACGTCCATC-CACGTTTACAATTTGTTGGGAATATGCATGTTTA 1245
consensus_11559#1 ATATAGATGTAGTGTCACGTCCAGCGCACGTTTACTATTTGTTGGGAATATGCATGTTTA 206
****** **** ********* * ********* ************************
consensus_11559#0 ATGTTTTCAATTATATCTTACAGATTTCTTGATACTCCATGGGAAAAAATGTTGACGATG 1305
consensus_11559#1 ATGTTTTCAATTATATCTTACAGATTTCTTGATACNCCATGGGAAAAAATNTTGNCGATG 266
*********************************** ************** *** *****
consensus_11559#0 CCTTTTCCAATCAGAGTAATAAAGCAATGTGCAAGGCAGTACTGTTGGTGTGTCGAAAAA 1365
consensus_11559#1 CCTTTTCCAATCNGNGTAATAAAGCAATNTGCAAGGCAGTAAAAAAAAAAAAAAAAAAAA 326
************ * ************* ************ *****
consensus_11559#0 AAAAAAAAAAAA------------------ 1377
consensus_11559#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 356
************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||