cluster # 1156

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Oryza sativa
cluster # 1156 cluster # 1156 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1156#0 length = 296 sequences # 1

consensus_1156#1 length = 230 sequences # 1

consensusID : consensus_1156#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 296
fasta sequence

                              [GGAGCTGGAGGGCATCTGCAACCCCATCATCGCCAAGATGTACCAGGGCGCTGGCGCGGACATGGCCGGCGGCATGGACGAGGACGATGCTCCCCCGGCTGGCGGCAGCGGTGCTGGCCCCAAGATCGAGGAGGTCGACTAAGCGCGAAATTTGCTAGTGATCCGCGCTTCAAGTTATCTTATTGCATTATTAGTGTCTCTTTTATGTTGTGTTAAAAAACTTTGCTGCTATGACCTATGATGATACCCTTGGTCTGTTTGGGCAAAAAAAAAAAAAAAAATAAATTAATAAAATA]

[+] EMBL BE040920             [GGAGCTGGAGGGCATCTGCAACCCCATCATCGCCAAGATGTACCAGGGCGCTGGCGCGGACATGGCCGGCGGCATGGACGAGGACGATGCTCCCCCGGCTGGCGGCAGCGGTGCTGGCCCCAAGATCGAGGAGGTCGACTAAGCGCGAAATTTGCTAGTGATCCGCGCTTCAAGTTATCTTATTGCATTATTAGTGTCTCTTTTATGTTGTGTTAAAAAACTTTGCTGCTATGACCTATGATGATACCCTTGGTCTGTTTGGGCAAAAAAAAAAAAAAAAATAAATTAATAAAATA]




>consensus_1156#0
GGAGCTGGAGGGCATCTGCAACCCCATCATCGCCAAGATGTACCAGGGCGCTGGCGCGGA
CATGGCCGGCGGCATGGACGAGGACGATGCTCCCCCGGCTGGCGGCAGCGGTGCTGGCCC
CAAGATCGAGGAGGTCGACTAAGCGCGAAATTTGCTAGTGATCCGCGCTTCAAGTTATCT
TATTGCATTATTAGTGTCTCTTTTATGTTGTGTTAAAAAACTTTGCTGCTATGACCTATG
ATGATACCCTTGGTCTGTTTGGGCAAAAAAAAAAAAAAAAATAAATTAATAAAATA

consensusID : consensus_1156#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 230
fasta sequence

                              [CTCCCCCGGCTGGCGGCAGCGGTGCTGGCCCCAAGATCGAGGAGGTCGACTAAGCGCGAAATTTGCTAGTGATCCGCGCTTCAAGTTATCTTATTGCATTATTAGTGTCTCTTTTATGTTGTGTTAAAAAACTTTGCTGCTATGACTTATGATGATACCCTTGGTCTGTTTGGGCAAAAAAAAAAAAAAAAAAAAAAACAATGTCATGCCGTTACGTAGCGTATCGTTGA]

[-] EMBL CF331829             [CTCCCCCGGCTGGCGGCAGCGGTGCTGGCCCCAAGATCGAGGAGGTCGACTAAGCGCGAAATTTGCTAGTGATCCGCGCTTCAAGTTATCTTATTGCATTATTAGTGTCTCTTTTATGTTGTGTTAAAAAACTTTGCTGCTATGACTTATGATGATACCCTTGGTCTGTTTGGGCAAAAAAAAAAAAAAAAAAAAAAACAATGTCATGCCGTTACGTAGCGTATCGTTGA]




>consensus_1156#1
CTCCCCCGGCTGGCGGCAGCGGTGCTGGCCCCAAGATCGAGGAGGTCGACTAAGCGCGAA
ATTTGCTAGTGATCCGCGCTTCAAGTTATCTTATTGCATTATTAGTGTCTCTTTTATGTT
GTGTTAAAAAACTTTGCTGCTATGACTTATGATGATACCCTTGGTCTGTTTGGGCAAAAA
AAAAAAAAAAAAAAAAAACAATGTCATGCCGTTACGTAGCGTATCGTTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1156#0      GGAGCTGGAGGGCATCTGCAACCCCATCATCGCCAAGATGTACCAGGGCGCTGGCGCGGA 60
consensus_1156#1      ------------------------------------------------------------
                                                                                  

consensus_1156#0      CATGGCCGGCGGCATGGACGAGGACGATGCTCCCCCGGCTGGCGGCAGCGGTGCTGGCCC 120
consensus_1156#1      -----------------------------CTCCCCCGGCTGGCGGCAGCGGTGCTGGCCC 31
                                                   *******************************

consensus_1156#0      CAAGATCGAGGAGGTCGACTAAGCGCGAAATTTGCTAGTGATCCGCGCTTCAAGTTATCT 180
consensus_1156#1      CAAGATCGAGGAGGTCGACTAAGCGCGAAATTTGCTAGTGATCCGCGCTTCAAGTTATCT 91
                      ************************************************************

consensus_1156#0      TATTGCATTATTAGTGTCTCTTTTATGTTGTGTTAAAAAACTTTGCTGCTATGACCTATG 240
consensus_1156#1      TATTGCATTATTAGTGTCTCTTTTATGTTGTGTTAAAAAACTTTGCTGCTATGACTTATG 151
                      ******************************************************* ****

consensus_1156#0      ATGATACCCTTGGTCTGTTTGGGCAAAAAAAAAAAAAAAAATAAAT-TAATAAAATA--- 296
consensus_1156#1      ATGATACCCTTGGTCTGTTTGGGCAAAAAAAAAAAAAAAAAAAAAAACAATGTCATGCCG 211
                      ***************************************** ***   ***   **    

consensus_1156#0      -------------------
consensus_1156#1      TTACGTAGCGTATCGTTGA 230