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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11589#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1158 fasta sequence
[GCAAGCGGAAGAAGGGGAGGCAGATCTCCCTCGGCCAACCCCAAGCAGATCCCGACGATGCTGCCCACGACGGCGTCCAAAGGGCGCGGCGCCGCCCGC-TCTGCGCCGCCGCTCTTCGGCCCCTACCTCCGCCGCATCGTCAAGTGGCAACAAATGGATATCGAGTACACATTTTGGCAAATGGTCCATCTCTGTACTTCACCAAAAGTAGTCTATCAGCACACCAAATATCACAAGCAAACAAA-GAATCAGTGGGCTCGGGATGATCCTGC-TTTTGTTGTCATTCTAATTCTTTTCCTTGTGTTTGCAACATCAGCTTACTGTGCAGCGTATGGAGAGAGTCCTTCACATGCTGCTTTAACAATCACTTCAGTTGTGCTTGTCCATTTCTTGTTTGCTGGGATAGTTCTGGCCACACTTTGCTGGTTTCTTACAAATTCTTACTTGAGGGAGGAACCTAACAGTCATGTGGTTGAGCAACGTGTGGAGTGGCTCTATGCATTTGATGTTCATTGCAACTCATTCTTCCCAGCCTTTGTCATCCTATATGTGCTTCAATATTTTCTATCGCCTCTGTTGGTCGCACATGGCTTCTTTCCTGCTCTATTATCAAACCTCTTGTTTGTGGTGGCAATTTCTTATTATCACTACCTGAATTTTCTAGGATATGATGTTCTTCCATTTTTGGACAGAACAACATTTTTCTTGTACCCGATTGGGCTTGTCATCATTCTCTCTCCACTGATGATACTCATAGGGTTCAATCCAACAAGATACTTTTTGAGCTTGTACTTCCGTTAAGGTCGATAACTAGAACAGTAAGAGAAGACTGGTGACAAAACTAATGGCAGATTGGGTACACACTTTTTACTCTAGCTTCTTAAATCTTTGTGTGAATTTGAGGAGAGTGAGGCTCAGGAAAAGGTCGATTTGTTCTTGAGATATATTACTGCCAGCGTGGGCCACGGGCACAGGCCTTTTGGTTGGAGCCCATTTTGGTGTCAACTTGTTCATAATATGTATTGTTTCCATTGATTAAAGAGTCAAGGACC-AGTGTACAATTTTAGTGGGAACCGGAACTTAAGCCGATTGTATCGAAGGGGCACCAACATTGTAATCCACCTGCCTAAGAATCATGAGTTTTTAGTGGCAAAAAAA]
[+] EMBL AK067482 [GCAAGCGGAAGAAGGGGAGGCAGATCTCCCTCGGCCAACCCCAAGCAGATCCCGACGATGCTGCCCACGACGGCGTCCAAAGGGCGCGGCGCCGCCCGC TCTGCGCCGCCGCTCTTCGGCCCCTACCTCCGCCGCATCGTCAAGTGGCAACAAATGGATATCGAGTACACATTTTGGCAAATGGTCCATCTCTGTACTTCACCAAAAGTAGTCTATCAGCACACCAAATATCACAAGCAAACAAA GAATCAGTGGGCTCGGGATGATCCTGC TTTTGTTGTCATTCTAATTCTTTTCCTTGTGTTTGCAACATCAGCTTACTGTGCAGCGTATGGAGAGAGTCCTTCACATGCTGCTTTAACAATCACTTCAGTTGTGCTTGTCCATTTCTTGTTTGCTGGGATAGTTCTGGCCACACTTTGCTGGTTTCTTACAAATTCTTACTTGAGGGAGGAACCTAACAGTCATGTGGTTGAGCAACGTGTGGAGTGGCTCTATGCATTTGATGTTCATTGCAACTCATTCTTCCCAGCCTTTGTCATCCTATATGTGCTTCAATATTTTCTATCGCCTCTGTTGGTCGCACATGGCTTCTTTCCTGCTCTATTATCAAACCTCTTGTTTGTGGTGGCAATTTCTTATTATCACTACCTGAATTTTCTAGGATATGATGTTCTTCCATTTTTGGACAGAACAACATTTTTCTTGTACCCGATTGGGCTTGTCATCATTCTCTCTCCACTGATGATACTCATAGGGTTCAATCCAACAAGATACTTTTTGAGCTTGTACTTCCGTTAAGGTCGATAACTAGAACAGTAAGAGAAGACTGGTGACAAAACTAATGGCAGATTGGGTACACACTTTTTACTCTAGCTTCTTAAATCTTTGTGTGAATTTGAGGAGAGTGAGGCTCAGGAAAAGGTCGATTTGTTCTTGAGATATATTACTGCCAGCGTGGGCCACGGGCACAGGCCTTTTGGTTGGAGCCCATTTTGGTGTCAACTTGTTCATAATATGTATTGTTTCCATTGATTAAAGAGTCAAGGACC AGTGTACAATTTTAGTGGGAACCGGAACTTAAGCCGATTGTATCGAAGGGGCACCAACATTGTAATCCACCTGCCTAAGAATCATGAGT ]
[+] EMBL C97702 [ AGAAGGGGAGGCAGATCTCCCTCGGCCAACCCCAAGCAGATCCCGACGATGCTGCCCACGACGGCGTCCAAAGGGCGCGGCGCCGCCCGC TCTGCGCCGCCGCTCTTCGGCCCCTACNTCCGGCGTATCGTCAAGTGGCAACAAATNGATATCGAGTACACATTTTGGCAAATGGTCCATCTCTGTACTTCACCAAAAGTAGTCTATCAGCACACCAAATATCACAAGCAAACAAAGGAATCAGTGGGCTCGGTATGATCCTGN TTTTGTTGT ]
[+] EMBL C28667 [ GGGGAGGCAGATCTCCCTCGGCCAACCCCAAGCAGATCCCGACGATGCTGCCCACGACGGCGTCCAAAGGGCGCGGCGCCGCCCGC TCTGCGCCGCCGCTCTTCGGCCCCTACCTCCGCCGCATCGTCAAGTGGCAACAAATGGATATCGAGTACACATTTTGGCAAATGGTCCATCTCTGTACTTCACCAAAAGTAGTCTATCAGCACACCAAATATCACAAGCAAACAAA GAATCAGTGGGCTCGGGATGATCCTGC TTTTGTTGTCANTCTAATTCT ]
[+] EMBL OSS3464A [ ATCTCCCTCGGCCAACCCCAAGCAGATCCCGACGATGCTGCCCACGACGGCGTCCAAAGGGCGCGGCGCCGCCCGN TCTGCGNCGNCGATCTTCGGCCCCTACCTCCGACGAATCGTCAAGTGGCAACAAATGGATATCGAGTACACATTTTGGCAAATGGTCCATCTCTGTACTTCACCAAAAGTAGTCTATCAGCACACCAAATATCACAAGCAAACAAA GAATCAGTGGGCTCGGGATGATCCTGN TTTTGTTGTCATTCTAATTATTTTCCTTGTGTTTGCAACATCAGNTTACTGTGCAGCGTATGGA ]
[+] EMBL OSS3040A [ ATCTCCCTCGGCCAACCCCAAGCAGATCCCGACGATGCTGCCCACGACGGCGTCCAAAGGGCGCGGCGCCGCCCGCTTCTGCGCCGCCGCTCTTCGGCCCCTACCTCCGCCGCATCGTCAAGTGGCAACAAATGGATATCGAGTACACATTTTGGCAAATGGTCCATCTCTGTACTTCACCAAAAGTAGTCTATCAGCACACCAAATATCACAAGCAAACAAA GAATCAGTGGGCTCGGGATGATCCTGCTTTTTGTTGTCATTCTAATTCTTTTCCTTGTGTTTGCAACATC ]
[+] EMBL AU172322 [ GTCATCATTCTCTCTCCACTGATGATACTCATAGGGTTCAATCCAACAAGATACTTTTTGAGCTTGTACTTCCGTTAAGGTCGATAACTAGANCAGTAAGAGAAGACTGGTGACAAAACTAATGGCAGATTGGGTACACACTTTTTACTCTAGCTTCTTAAATCTTTGTGTGAATTTGAGGAGAGTGAGGCTCAGGAAAAGGTCGATTTGTTCTTGAGATATATTACTGCCAGCGTGGGCCACGGGCACAGGCCTTTTGGTTGGAGCCCATTTTGGTGTCAACTTGTTCATAATATGTATTGTTTCCATTGATTAAAGAGTCAAGGACCNAGTGTACAATTTTAGTGGGAACCGGAACTTAAGCCGATTGTATCGAAGGGGCACCAACATTGTAATCCACCTGCCTAAGAATCATGAGTTTTTAGTGGCAAAAA ]
[+] EMBL C97703 [ CTTCCGTTAAGGTCGATAACTAGAACAGTAAGAGAAGACTGGTGACAAAACTAATGGCAGATTGGGTACACACTTTTTACTCTAGCTTCTTAAATCTTTGTGTGAATTTGAGGAGAGTGAGGCTCAGGAAAAGGTCGATTTGTTCTTGAGATATATTACTGCCAGCGTGGGCCACGGGCACAGGCCTTTTGGTTGGAGCCCATTTTGGTGTCAACTTGTTCATAATATGTATTGTTTCCATTGATTAAAGAGTCAA NNCC AGTGTACAATTTTAGTGGGAACCGGAACTTAAGCCGATTGTATCGAAGGGGCACCAANATTGTAATCCACNTNCGTAAGAATCATGAGTTTTTAGTGGCAAAAAAA]
consensusID : consensus_11589#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 229 fasta sequence
[TTTTTTTTTTGAAGGGAAACTTTGGTTCGATATGTTTAATGAAGAATGCTATTTTTTTTCTTATAAACCAACAAGGCAATAACCCACGCCCTGATGCTTAACCGTGCTATCTGCTATCAAAGGAAATATGCCACTAAAAACTCATGATTCTTAGGCAGGTGGATTACAATGTTGGTGCCCCTTCGATACAATCGGCTTAAGTTCCGGTTCCCCCCCTTGTCTCTCCTCT]
[+] EMBL CA760913 [TTTTTTTTTTGAAGGGAAACTTTGGTTCGATATGTTTAATGAAGAATGCTATTTTTTTTCTTATAAACCAACAAGGCAATAACCCACGCCCTGATGCTTAACCGTGCTATCTGCTATCAAAGGAAATATGCCACTAAAAACTCATGATTCTTAGGCAGGTGGATTACAATGTTGGTGCCCCTTCGATACAATCGGCTTAAGTTCCGGTTCCCCCCCTTGTCTCTCCTCT]
consensusID : consensus_11589#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 73 fasta sequence
[CAGAGAACGAGACAAGGGGCACCAACATTGTAATCCACCTGCCTAAGAATCATGAGTTTTTAGTGGCAAAAAA]
[+] EMBL CA766053 [CAGAGAACGAGACAAGGGGCACCAACATTGTAATCCACCTGCCTAAGAATCATGAGTTTTTAGTGGCAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11589#0 GCAAGCGGAAGAAGGGGAGGCAGATCTCCCTCGGCCAACCCCAAGCAGATCCCGACGATG 60
consensus_11589#2 ------------------------------------------------------------
consensus_11589#1 ------------------------------------------------------------
consensus_11589#0 CTGCCCACGACGGCGTCCAAAGGGCGCGGCGCCGCCCGCTCTGCGCCGCCGCTCTTCGGC 120
consensus_11589#2 ------------------------------------------------------------
consensus_11589#1 ------------------------------------------------------------
consensus_11589#0 CCCTACCTCCGCCGCATCGTCAAGTGGCAACAAATGGATATCGAGTACACATTTTGGCAA 180
consensus_11589#2 ------------------------------------------------------------
consensus_11589#1 ------------------------------------------------------------
consensus_11589#0 ATGGTCCATCTCTGTACTTCACCAAAAGTAGTCTATCAGCACACCAAATATCACAAGCAA 240
consensus_11589#2 ------------------------------------------------------------
consensus_11589#1 ------------------------------------------------------------
consensus_11589#0 ACAAAGAATCAGTGGGCTCGGGATGATCCTGCTTTTGTTGTCATTCTAATTCTTTTCCTT 300
consensus_11589#2 ------------------------------------------------------------
consensus_11589#1 ------------------------------------------------------------
consensus_11589#0 GTGTTTGCAACATCAGCTTACTGTGCAGCGTATGGAGAGAGTCCTTCACATGCTGCTTTA 360
consensus_11589#2 ------------------------------------------------------------
consensus_11589#1 ------------------------------------------------------------
consensus_11589#0 ACAATCACTTCAGTTGTGCTTGTCCATTTCTTGTTTGCTGGGATAGTTCTGGCCACACTT 420
consensus_11589#2 ------------------------------------------------------------
consensus_11589#1 ------------------------------------------------------------
consensus_11589#0 TGCTGGTTTCTTACAAATTCTTACTTGAGGGAGGAACCTAACAGTCATGTGGTTGAGCAA 480
consensus_11589#2 ------------------------------------------------------------
consensus_11589#1 ------------------------------------------------------------
consensus_11589#0 CGTGTGGAGTGGCTCTATGCATTTGATGTTCATTGCAACTCATTCTTCCCAGCCTTTGTC 540
consensus_11589#2 ------------------------------------------------------------
consensus_11589#1 ------------------------------------------------------------
consensus_11589#0 ATCCTATATGTGCTTCAATATTTTCTATCGCCTCTGTTGGTCGCACATGGCTTCTTTCCT 600
consensus_11589#2 ------------------------------------------------------------
consensus_11589#1 ------------------------------------------------------------
consensus_11589#0 GCTCTATTATCAAACCTCTTGTTTGTGGTGGCAATTTCTTATTATCACTACCTGAATTTT 660
consensus_11589#2 ------------------------------------------------------------
consensus_11589#1 ------------------------------------------------------------
consensus_11589#0 CTAGGATATGATGTTCTTCCATTTTTGGACAGAACAACATTTTTCTTGTACCCGATTGGG 720
consensus_11589#2 ------------------------------------------------------------
consensus_11589#1 ------------------------------------------------------------
consensus_11589#0 CTTGTCATCATTCTCTCTCCACTGATGATACTCATAGGGTTCAATCCAACAAGATACTTT 780
consensus_11589#2 ------------------------------------------------------------
consensus_11589#1 ------------------------------------------------------------
consensus_11589#0 TTGAGCTTGTACTTCCGTTAAGGTCGATAACTAGAACAGTAAGAGAAGACTGGTGACAAA 840
consensus_11589#2 ------------------------------------------------------------
consensus_11589#1 ------------------------------------------------------------
consensus_11589#0 ACTAATGGCAGATTGGGTACACACTTTTTACTCTAGCTTCTTAAATCTTTGTGTGAATTT 900
consensus_11589#2 ------------------------------------------------------------
consensus_11589#1 ------------------------------------------------------------
consensus_11589#0 GAGGAGAGTGAGGCTCAGGAAAAGGTCGATTTGTTCTTGAGATATATTACTGCCAGCGTG 960
consensus_11589#2 ------------------------------------------------------------
consensus_11589#1 --------------------------TTTTTTTTTTGAAGGGAAACTTTGGTTCGATATG 34
consensus_11589#0 GGCCACGGGCACAGGCCTTTTGGTTGGAGCCCATTTTGGTGTCAACTTGTTCATAATATG 1020
consensus_11589#2 ------------------------------------------------------------
consensus_11589#1 TTTAATGAAGAATGCTATTTTTTTTCTTATAAACCAACAAGGCAATAACCCACGCCCTGA 94
consensus_11589#0 TATTGTTTCCATTGATTAAAGAGTCAAGGACCAGTGTACAATTTTAGTGGGAACCGGAAC 1080
consensus_11589#2 ------------------------------------------------------------
consensus_11589#1 TGCTTAACCGTGCTATCTGCTATCAAAGGAAATATGCCACTAAAAACTCATGATTCTTAG 154
consensus_11589#0 TTAAGCCGATTGTATCGAAGGGGCACCAACATTGTAATCCACCTGCCTAAGAATCATGAG 1140
consensus_11589#2 --CAGAGAACGAGAC--AAGGGGCACCAACATTGTAATCCACCTGCCTAAGAATCATGAG 56
consensus_11589#1 GCAGGTGGATTACAATGTTGGTGCCCCTTCGATACAATCGGCTTAAGTTCCGGTTCCCCC 214
* * * ** ** ** * * **** * * * *
consensus_11589#0 TTTTTAGTGGCAAAAAAA 1158
consensus_11589#2 TTTTTAGTGGCAAAAAA- 73
consensus_11589#1 CCTTGTCTCTCCTCT--- 229
** * *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||