|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11610#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1374 fasta sequence
[CCTCGCCTTCCGGGCTTCCTCCGCTCCACGCCGGCGAGTCCACACTCCTCCGACCAGCCGCCGCCGCCGCCCCGCGTCGTCACGCGCGCGCGCGCGCGAGAGAGAGAGATCCCCCTGCCCCAGCCACGATGGCGGTCGGCATCGCGCTGCTGCTCGACCTCGCCTCCCGCGGCCCCCGCTACGCCTCCGGGGTCCACGCCCACTCCGCGATCTCCGCCTCCGCCGCCGCCGCCGCGGCCGCAGCCGCCGCGCTCTCCGCCACCGGCATCCCCCTCTCCGCGCGCCACCTCTTCGGTTTCCCTGGGTTTACTATAGCCCATTGTGATGCTGGTGCACCAACTGGATTGAATGATGCTCCTGATCTTATTAATGGTCTTAATGACAAAATACAAGACTCCCTCCAGTACCCAATAAAGGAATACCCCTTGGAGTTGAAGCCACTCTTTTCGGCCTTTGCTTTAAAGAATTTTAGCTTGACAACCCTGAGGTCCTTCTTATTGTACTATTTGCCACTTTTGGAACCTCATCCGCACACTGATGGTGATGATGAGGATGACCTGCTTCAAGATGAGTCTGAAAATAGGCCACCTGTTGATTTGGTTACTCCCTTCTACAATTCAGTGAAGCAAATCATCCGTGAGACTTCTGTTGTAACAACCAGAAGAATATTGGAAAGGATTGCAGTTTGTCATGTTTCACAAAGAACAGCATGGAAGCTTCTCAAGGATGCCTCAAAATCATCAAAGAGGAAATCTGTAAGGGGGATGCCCTTCCAAGAGTACTCATATTGTGTTGCTAGAACGACTTTCCGAGCGCATGCATTGGGAGTTGCTGCTGCTTGGGTTGTGCAATCCATAGTTGAGGTTTACAGATGTTTTTCCGGTAAGCCTTCCAATGATCAGGCAATGTTTGATGAGATGGACAAAGTCAAACTGTTCGGGAAAAAGATATACGGCATAACCGTCAAATGCGGGTTCTCTTTGGTTTTTG-CCTCAATAGGAGCTGGCATTGGGGTCCTTGTGCATCCAGTACATGGACAGTGGCTTGGTTGTACATTGGGAGATTTCGCGGGACCAATTGTCGCCATACTT-GTTTTCGAGAAGTTCCAGTTGCCGCTCTAAGGTGAAAAATGAAACCCCGCGGCTTCTACGCAACTAGCCTTGGTGGAGATCTCCATGACTCCATGAGACCTGACTTGAAGTTCGATGAATAATTTAGCTGTCAGCCTCTATGCGCAAAAGTCCATAGCTTGTTTTATTTTTTTTCAAGACACGCCTTTGGGCATCATGAGATGTTGATATTATGTTCTTTAGATTTTGAAACTCAGGCTAACAGTTTTGACTAATTGGTTTTCTGAACTTTCACAATAAAAAA]
[+] EMBL AK067767 [CCTCGCCTTCCGGGCTTCCTCCGCTCCACGCCGGCGAGTCCACACTCCTCCGACCAGCCGCCGCCGCCGCCCCGCGTCGTCACGCGCGCGCGCGCGCGAGAGAGAGAGATCCCCCTGCCCCAGCCACGATGGCGGTCGGCATCGCGCTGCTGCTCGACCTCGCCTCCCGCGGCCCCCGCTACGCCTCCGGGGTCCACGCCCACTCCGCGATCTCCGCCTCCGCCGCCGCCGCCGCGGCCGCAGCCGCCGCGCTCTCCGCCACCGGCATCCCCCTCTCCGCGCGCCACCTCTTCGGTTTCCCTGGGTTTACTATAGCCCATTGTGATGCTGGTGCACCAACTGGATTGAATGATGCTCCTGATCTTATTAATGGTCTTAATGACAAAATACAAGACTCCCTCCAGTACCCAATAAAGGAATACCCCTTGGAGTTGAAGCCACTCTTTTCGGCCTTTGCTTTAAAGAATTTTAGCTTGACAACCCTGAGGTCCTTCTTATTGTACTATTTGCCACTTTTGGAACCTCATCCGCACACTGATGGTGATGATGAGGATGACCTGCTTCAAGATGAGTCTGAAAATAGGCCACCTGTTGATTTGGTTACTCCCTTCTACAATTCAGTGAAGCAAATCATCCGTGAGACTTCTGTTGTAACAACCAGAAGAATATTGGAAAGGATTGCAGTTTGTCATGTTTCACAAAGAACAGCATGGAAGCTTCTCAAGGATGCCTCAAAATCATCAAAGAGGAAATCTGTAAGGGGGATGCCCTTCCAAGAGTACTCATATTGTGTTGCTAGAACGACTTTCCGAGCGCATGCATTGGGAGTTGCTGCTGCTTGGGTTGTGCAATCCATAGTTGAGGTTTACAGATGTTTTTTCGGTAAGCCTTCCAATGATCAGGCAATGTTTGATGAGATGGACAAAGTCAAACTGTTCGGGAAAAAGATATACGGCATAACCGTCAAATGCGGGTTCTCTTTGGTTTTTG CCTCAATAGGAGCTGGCATTGGGGTCCTTGTGCATCCAGTACATGGACAGTGGCTTGGTTGTACATTGGGAGATTTCGCGGGACCAATTGTCGCCATACTT GTTTTCGAGAAGTTCCAGTTGCCGCTCTAAGGTGAAAAATGAAACCCCGCGGCTTCTACGCAACTAGCCTTGGTGGAGATCTCCATGACTCCATGAGACCTGACTTGAAGTTCGATGAATAATTTAGCTGTCAGCCTCTATGCGCAAAAGTCCATAGCTTGTTTTATTTTTTTTCAAGACACGCCTTTGGGCATCATGAGATGTTGATATTATGTTCTTTAGATTTTGAAACTCAGGCTAAC ]
[+] EMBL CB641684 [ CCGACCAGCCGCCGCCGCCGCCCCGCGTCGTCACGCGCGCGCGCGCGCGAGAGAGAGAGATCCCCCTGCCCCAGCCACGATGGCGGTCGGCATCGCGCTGCTGCTCGACCTCGCCTCCCGCGGCCCCCGCTACGCCTCCGGGGTCCACGCCCACTCCGCGATCTCCGCCTCCGCCGCCGCCGCCGCGGCCGCAGCCGCCGCGCTCTCCGCCACCGGCATCCCCCTCTCCGCGCGCCACCTCTTCGGTTTCCCTGGGTTTACTATAGCCCATTGTGATGCTGGTGCACCAACTGGATTGAATGATGCTCCTGATCTTATTAATGGTCTTAATGACAAAATACAAGACTCCCTCCAGTACCCAATAAAGGAATACCCCTTGGAGTTGAAGCCACTCTTTTCGGCCTTTGCTTTAAAGAATTTTAGCTTGACAACCCTGAGGTCCTTCTTATTGTACTATTTGCCACTTTTGGAACCTCATCCGCACACTGATGGTGATGATGAGGATGACCTGCTTCAAGATGAGTCTGAAAATAGGCCACCTGTTGATTTGGTTACTCCCTTCTACAATTCAGTGAAGCAAATCATCCGTGAGACTTCTGTTGTAACAACCAGAAGAATATTGGAAAGGATTGCAGTTTGTCATGTTTCACAAAGAACAGCATGGAAGCTTCTCAAGGATGCCTCAAAATCATCAAAGAGGAAATCTGTAAGGGGGATGCCCTTCCAAGAGTACTCATATTGTGTTGCTAGAACGACTTTCCGAGCGCATGCATTGGGAGTTGCTGCTGCTTGGGTTGTGCAATCCATAGTTGAGGTTTACAG ]
[+] EMBL AU066223 [ GGGGATGCCCTTCCAAGAGTACTCATATTGTGTTGCTAGAACGACTTTCCGAGCGCATGCATTGGGAGTTGCTGCTGCTTGGGTTGTGCAATCCATAGTTGAGGTTTACAGATGTTTTTNCGGTAAGCCTTCCAATGATCAGGCAATGTTTGATGAGATGGACAAAGTCAAACTGTTCGGGAAAAAGATATACGGCATAACCGTCAAATGCGGGTTCTCTTTGGTTTTTG CCTCAATAGGAGCTGGCATTGGGGTCCTTGTGCATCCAGTACATGGACAGTGGCTTGGTTGTACATTGGGAGATTTCGCGGGACCAATTGTCGCCATACTT GTTTTCGAGAAGTTCCAGTTGCCGCTCTAAGGTGAAAAATG AACCCCGCGGCTTCT ]
[+] EMBL AU066311 [ GGGGATGCCCTTCCAAGAGTACTCATATTGTGTTGCTAGAACGACTTTCCGAGCGCATGCATTGGGAGTTGCTGCTGCTTGGGTTGTGCAATCCATAGTTGAGGTTTACAGATGTTTTTCCGGTAAGCCTTCCAATGATCAGGCAATGTTTGATGAGATGGACAAAGTCAAACTGTTCGGGAAAAAGATATACGGCATAACCGTCAAATGCGGGTTCTCTTT ]
[+] EMBL C26851 [ ngntntnCTAGATCGANTTTCCGAGCGCATGCATTGGGAGTTGCTGCTGCTTGGGTTGTGCAATCCATAGTTGAGGTTTACAGATGTTTTTCCGGTAAGCCTTCCAATGATCAGGCAATGTTTGATGAGATGGACAAAGTCAAACTGTTCGGGAAAAAGATATACGGCATAACCGTCAAATGCGGGTTCTCTTTGGTTTTTN CCTCAATAGGAGCTGGCATTGGGGTCCTTGTGCATCCAGTACATGGACAGTGGCTTGGTTGTACATTGGGAGATTTCGCGGGACCAATTNTCGCCATACTTGGTTTTCGAGAAG TCCAGTTTCCGNTCTAAGGTGAAAAATGAAACCC ]
[-] EMBL OSC23841 [ ATGANCAGCCAATGTTTGATGAGATGGACAAAGTCAAACTGTCCGGGAAAAAGATATACGGCATAACCGTCAAATGCGGGTCCCCTTTGGTTTTTGCCCTCAATAGGAGCTGGCATTGGGGTCCTTGTGCATCCAGTACATGGACAGTGGCTTGGTTGTACATTGGGAGATTTCGCGGGACCAATTGTCGCCATACTT GTTTTCGAGAAGTTCCAGTTGCCGCTCTAAGGTGAAAAATGAAACCCCGCGGCTTCTACGCAACTAGCCTTGGTGGAGATCTCCATGACTCCATGAGACCTGACTTGAAGTTCGATGAATAATTTAGCTGTCAGCCTCTATGCGCAAAAGTCCATAGCTTGTTTTATTTTTTTTCAAGACACGCCTTTGGGCATCATGAGATGTTGATATTATGTTCTTTAGATTTTGAAACTCAGGCTAAC ]
[-] EMBL OSC27471 [ AACTGTNCGGNAAAAAGATATACGGCATAACCGNCAAATGCGGGTNCNCTTTGGTTTTTG CCTCAATAGGAGCTGGCATTGGGGCCCTTGTGCATCCAGTACATGGACAGTGGCTTGGTTGTACATTGGGAGATTTCGCGGGACCAATTGNCGCCATACTT GTTTTCGAGAAGTTCCAGTTGCCGCTCTAAGGTGAAAAATGAAACCCCGCGGCTTCTACGCAACTAGCCTTGGTGGAGATCTCCATGACTCCATGAGACCTGACTTGAAGTTCGATGAATAATTTAGCTGTCAGCCTCTATGCGCAAAAGTCCATAGCTTGTTTTATTTTTTTTCAAGACACGCCTTTGGGCATCATGAGATGTTGATATTATGTTCTTTAGATTTTGAAACTCAGGCTAAC ]
[+] EMBL AU181532 [ GTTCGGGAAAAAGATATACGGCATAACCGTCAAATGCGGGTTCTCTTTGGTTTTTG CCTCAATAGGAGCTGGCATTGGGGTCCTTGTGCATCCAGTACATGGACAGTGGCTTGGTTGTACATTGGGAGATTTCGCGGGACCAATTGTCGCCATACTT GTTTTCGAGAAGTTCCAGTTGCCGCTCTAAGGTGAAAAATGAAACCCCGCGGCTTCTACGCAACTAGCCTTGGTGGAGATCTCCATGACTCCATGAGACCTGACTTGAAGTTCGATGAATAATTTAGCTGTCAGCCTCTATGCGCAAAAGTCCATAGCTTGTTTTATTTTTTTTCAAGACACGCCTTTGGGCATCATGAGATGTTGATATTATGTTCTTTAGATTTTGAAACTCAGGCTAACAGTTTTGACTAATTGGTTTTCTGAACTTTCACAATAAAAAA]
consensusID : consensus_11610#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 431 fasta sequence
[GTCAAACTGTTCGGGAAAAAGATATACGGCATAACCGTCAAATGCGGGTTCTCTTTGGTTTTTGCCTCAATAGGAGCTGGCATTGGGGTCCTTGTGCATCCAGTACATGGACAGTGGCTTGGTTGTACATTGGGAGATTTCGCGGGACCAATTGTCGCCATACTTGTTTTCGAGAAGTTCCAGTTGCCGCTNTAAGGTGAAAAATGAAACCCCGCGGCTTNTACGCAACTAGCCTTGGTGGAGATCTCCATGACTCCATGAGACCTGACTTGAAGTTCGATGAATAATTTAGCTGTCAGCCTCTATGCGCAAAAGTCCATAGCTTGTTTTATTTTTTTTCAAGACACGCCTTTGGGCATCATGAGATGTTGATATTATGTTCTTTAGATTTTGAAACTCAGGCTAACAGTTTTGACTAAAAAAAAAAAAAA]
[+] EMBL AU174413 [GTCAAACTGTTCGGGAAAAAGATATACGGCATAACCGTCAAATGCGGGTTCTCTTTGGTTTTTGCCTCAATAGGAGCTGGCATTGGGGTCCTTGTGCATCCAGTACATGGACAGTGGCTTGGTTGTACATTGGGAGATTTCGCGGGACCAATTGTCGCCATACTTGTTTTCGAGAAGTTCCAGTTGCCGCTNTAAGGTGAAAAATGAAACCCCGCGGCTTNTACGCAACTAGCCTTGGTGGAGATCTCCATGACTCCATGAGACCTGACTTGAAGTTCGATGAATAATTTAGCTGTCAGCCTCTATGCGCAAAAGTCCATAGCTTGTTTTATTTTTTTTCAAGACACGCCTTTGGGCATCATGAGATGTTGATATTATGTTCTTTAGATTTTGAAACTCAGGCTAACAGTTTTGACTAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11610#0 CCTCGCCTTCCGGGCTTCCTCCGCTCCACGCCGGCGAGTCCACACTCCTCCGACCAGCCG 60
consensus_11610#1 ------------------------------------------------------------
consensus_11610#0 CCGCCGCCGCCCCGCGTCGTCACGCGCGCGCGCGCGCGAGAGAGAGAGATCCCCCTGCCC 120
consensus_11610#1 ------------------------------------------------------------
consensus_11610#0 CAGCCACGATGGCGGTCGGCATCGCGCTGCTGCTCGACCTCGCCTCCCGCGGCCCCCGCT 180
consensus_11610#1 ------------------------------------------------------------
consensus_11610#0 ACGCCTCCGGGGTCCACGCCCACTCCGCGATCTCCGCCTCCGCCGCCGCCGCCGCGGCCG 240
consensus_11610#1 ------------------------------------------------------------
consensus_11610#0 CAGCCGCCGCGCTCTCCGCCACCGGCATCCCCCTCTCCGCGCGCCACCTCTTCGGTTTCC 300
consensus_11610#1 ------------------------------------------------------------
consensus_11610#0 CTGGGTTTACTATAGCCCATTGTGATGCTGGTGCACCAACTGGATTGAATGATGCTCCTG 360
consensus_11610#1 ------------------------------------------------------------
consensus_11610#0 ATCTTATTAATGGTCTTAATGACAAAATACAAGACTCCCTCCAGTACCCAATAAAGGAAT 420
consensus_11610#1 ------------------------------------------------------------
consensus_11610#0 ACCCCTTGGAGTTGAAGCCACTCTTTTCGGCCTTTGCTTTAAAGAATTTTAGCTTGACAA 480
consensus_11610#1 ------------------------------------------------------------
consensus_11610#0 CCCTGAGGTCCTTCTTATTGTACTATTTGCCACTTTTGGAACCTCATCCGCACACTGATG 540
consensus_11610#1 ------------------------------------------------------------
consensus_11610#0 GTGATGATGAGGATGACCTGCTTCAAGATGAGTCTGAAAATAGGCCACCTGTTGATTTGG 600
consensus_11610#1 ------------------------------------------------------------
consensus_11610#0 TTACTCCCTTCTACAATTCAGTGAAGCAAATCATCCGTGAGACTTCTGTTGTAACAACCA 660
consensus_11610#1 ------------------------------------------------------------
consensus_11610#0 GAAGAATATTGGAAAGGATTGCAGTTTGTCATGTTTCACAAAGAACAGCATGGAAGCTTC 720
consensus_11610#1 ------------------------------------------------------------
consensus_11610#0 TCAAGGATGCCTCAAAATCATCAAAGAGGAAATCTGTAAGGGGGATGCCCTTCCAAGAGT 780
consensus_11610#1 ------------------------------------------------------------
consensus_11610#0 ACTCATATTGTGTTGCTAGAACGACTTTCCGAGCGCATGCATTGGGAGTTGCTGCTGCTT 840
consensus_11610#1 ------------------------------------------------------------
consensus_11610#0 GGGTTGTGCAATCCATAGTTGAGGTTTACAGATGTTTTTCCGGTAAGCCTTCCAATGATC 900
consensus_11610#1 ------------------------------------------------------------
consensus_11610#0 AGGCAATGTTTGATGAGATGGACAAAGTCAAACTGTTCGGGAAAAAGATATACGGCATAA 960
consensus_11610#1 --------------------------GTCAAACTGTTCGGGAAAAAGATATACGGCATAA 34
**********************************
consensus_11610#0 CCGTCAAATGCGGGTTCTCTTTGGTTTTTGCCTCAATAGGAGCTGGCATTGGGGTCCTTG 1020
consensus_11610#1 CCGTCAAATGCGGGTTCTCTTTGGTTTTTGCCTCAATAGGAGCTGGCATTGGGGTCCTTG 94
************************************************************
consensus_11610#0 TGCATCCAGTACATGGACAGTGGCTTGGTTGTACATTGGGAGATTTCGCGGGACCAATTG 1080
consensus_11610#1 TGCATCCAGTACATGGACAGTGGCTTGGTTGTACATTGGGAGATTTCGCGGGACCAATTG 154
************************************************************
consensus_11610#0 TCGCCATACTTGTTTTCGAGAAGTTCCAGTTGCCGCTCTAAGGTGAAAAATGAAACCCCG 1140
consensus_11610#1 TCGCCATACTTGTTTTCGAGAAGTTCCAGTTGCCGCTNTAAGGTGAAAAATGAAACCCCG 214
************************************* **********************
consensus_11610#0 CGGCTTCTACGCAACTAGCCTTGGTGGAGATCTCCATGACTCCATGAGACCTGACTTGAA 1200
consensus_11610#1 CGGCTTNTACGCAACTAGCCTTGGTGGAGATCTCCATGACTCCATGAGACCTGACTTGAA 274
****** *****************************************************
consensus_11610#0 GTTCGATGAATAATTTAGCTGTCAGCCTCTATGCGCAAAAGTCCATAGCTTGTTTTATTT 1260
consensus_11610#1 GTTCGATGAATAATTTAGCTGTCAGCCTCTATGCGCAAAAGTCCATAGCTTGTTTTATTT 334
************************************************************
consensus_11610#0 TTTTTCAAGACACGCCTTTGGGCATCATGAGATGTTGATATTATGTTCTTTAGATTTTGA 1320
consensus_11610#1 TTTTTCAAGACACGCCTTTGGGCATCATGAGATGTTGATATTATGTTCTTTAGATTTTGA 394
************************************************************
consensus_11610#0 AACTCAGGCTAACAGTTTTGACTAATTGGTTTTCTGAACTTTCACAATAAAAAA 1374
consensus_11610#1 AACTCAGGCTAACAGTTTTGACTAAAAAAAAAAAAAA----------------- 431
************************* *
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||