cluster # 11653

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Oryza sativa
cluster # 11653 cluster # 11653 Sequences # 9 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11653#0 length = 716 sequences # 7

consensus_11653#1 length = 579 sequences # 2

consensusID : consensus_11653#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 716
fasta sequence

                              [ACACGTCGCAAGTCGAAGCACAAAACG-CAAGCAACGAATCTCAATCCACAGGCTCACAC-TGATACGCAACGCACGTAGCTAC-TGTACTGTAGGAGCAAAAGAAAAGAAAAGAT-GCAGACGGCGAAGGTGAAGGT-GCAGGACATGGTGAGCGGTGCCAAGGAGAAGGTGAAGGAGGGGACGGCCAAGGCGCACGGCAAGGCCGGCCAGGCGACGGCGGCCACGC-AC-GGCGAGAAGGAGATGGCCAAGCAGGAGGAGAAGGCCGGCAAGGCACAGGCCAAGGCCGACGAGCACCAGGAGAGGGCGGAGCACCGCGCCAACGCCACCACGGGCCGCCACGGCACGCGCGTGCCGCTCACGGCCGGCGGCAACCGCCACCACCAC-GCTCCGGTCGGCGGCCCCGCCGTCGACCCTGCATACCCGGCCGCCGGCACCGGCACCGGCACCGGCACGTACGCGGCGTCCGACAAATCGTACATCTAGATTTGGGGTAGATGGACATGGGCGGGCTTGATCGATCTGGATCGCTAGTGTGTTTTTTTTCAGTGTAGCGAGTGATCTGGTCCCAGCCCGGCCGCTGATCGTGTTAGCTTGTGTTCGTACGCACGCGTGTATGCTGTGTGCACATGCGTGTGCTGGAATAAAAAGTGTCAGTTGTAAAATTAACATGCTTGATGTAGTTCTGTTCAATGAAAGGGCTTTCGTTTTCAAAAAAAAAA]

[+] EMBL AK063682             [ACACGTCGCAAGTCGAAGCACAAAACG CAAGCAACGAATCTCAATCCACAGGCTCACAC TGATACGCAACGCACGTAGCTAC TGTACTGTAGGAGCAAAAGAAAAGAAAAGAT GCAGACGGCGAAGGTGAAGGT GCAGGACATGGTGAGCGGTGCCAAGGAGAAGGTGAAGGAGGGGACGGCCAAGGCGCACGGCAAGGCCGGCCAGGCGACGGCGGCCACGC AC GGCGAGAAGGAGATGGCCAAGCAGGAGGAGAAGGCCGGCAAGGCACAGGCCAAGGCCGACGAGCACCAGGAGAGGGCGGAGCACCGCGCCAACGCCACCACGGGCCGCCACGGCACGCGCGTGCCGCTTACGGCCGGCGGCAACCGCCACCACCAC GCTCCGGTCGGCGGCCCCGCCGTCGACCCTGCATACCCGGCCGCCGGCACCGGCACCGGCACCGGCACGTACGCGGCGTCCGACAAATCGTACATCTAGATTTGGGGTAGATGGACATGGGCGGGCTTGATCGATCTGGATCGCTAGTGTGTTTTTTTTCAGTGTAGCGAGTGATCTGGTCCCAGCCCGGCCGCTGATCGTGTTAGCTTGTGTTCGTACGCACGCGTGTATGCTGTGTGCACATGCGTGTGCTGGAATAAAAAGTGTCAGATGTAAAATTAACATGCTTGATGTAGTTCTGTTCAATGAAAGGGC                    ]
[+] EMBL OSC868               [                     AAAACG CAAGCAACGAATCTCAATCCACAGGCTCACAC TGATACGCAACGCACGTAGCTAC TGTACTGTAGGAGCAAAAGAAAAGAAAAGAT GCAGACGGCGAAGGTGAAGGT GCAGGACATGGTGAGCGGTGCCAAGGAGAAGGTGAAGGAGGGGACGGCCAAGGCGCACGGCAAGGCCGGCCAGGCGACGGCGGCCACGC AC GGCGAGAAGGAGATGGCCAAGCAGGAGGAGAAGGCCGGCAA GNACAGGCCAAGGCCGACGAGCACCAGGAGAGGGCGG GCACCGNGCCAACGGCACCACGG                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AU163829             [                       AACGCCAANCAACGAATCTCAATCCACAGGCTCACAN TGATACGCAACGCACGTAGCTACTTGTACTGTAGGAGCAAAAGAAAAGAAAAGAT GCAGACGGCAAAGGTGAA GT GCAGGACATGGT AACGGTGCCAAGGAGAAGGTGAAGGA GGGACGGCCAAGGCGCACGGCAAGGCCGGCCAGGCGACGGCGGCCACGC AC GGCGAGAAGGAGATGGCCAAGCAGGA GAGAAGGCCGGCAAGGCACAGGCCAAGGCCGACGAGCACCAGGAGA GGCGGAGCACCGCGCCAACGCCACCACGGGCCGCCACGGCACGCGCGTGCCGCTTACGGCCGGCGGCAACCGCCACCACCAC GCTCCGGTCGGCGGCCCCGCCGTCGACCCTGCATACCCGGCCGCCGGCACCGGCACCGGCACCGGCACGTACGCGGCGTCCGACAAATCGTACATCTAGATTTGGGGTAGATGGACATGGGCGGGCTTGATCGATCTGGATCGCTAGTGTGTTTTTTTTCAGTGTAGCGAGTGATCTGGTCCCAGCCCGGCCGCTGATCGTGTTAGCTTGTGTTCGTACGCACGCGTGTATGCTGTGTGCACATGCGTGTGCTGGAATAAAAAGTGTCAGATGTAAAATTAACATGCTTGATGTAGTTCTGTTCAATGAAAGGGCTTTCGTTTTCAAAAA     ]
[+] EMBL BI799243             [                                         TCAATCCACAGGCTCACACGTGATACGCTACGCACGTAGCTAC TGTACT TAGGCCCAAAAGAAAAG AAAGATCCCAGCCGGCGAAGTTGAAGGTCGCAGAACATGGTGA CCGT CCAAGGAGAAGTTGAAGGA GGGACGCCCAAGGCGCACGGCAAGCCCGGCCAGGCGACGGCGGCCACGC AC GGCGAGAAGGAGATGCCCAAGCAGGAGGAGAA GCCGGCAAGGCACAGGCCAAGGCCGACGAGCACCAGGAGAGGGCGGAGCACCGCGCCAACGCCACCACGGGCCGCCACGGCACGCGCGTGCCGCTCACGGCCGGCGGCAACCGCCACCACCAC GCTCCGGTCGGCGGCCCCGCCGTCGACCCTGCATACCCGGCCGCCGGCACCGGCACCGGCACCGGCACGTACGCGGCGTCCGACAAATCGTACATCTAGATTTGGGGTAGATGGACATGGGCGGGCTTGATCGATCTGGATCGCTAGTGTGTTTTTTTTCAGTGTAGCGAGTGATCTGGTCCCAGCCCGGCCGCTGATCGTGTTAGCTTGTGTTCGTACGCACGCGTGTATGCTGTGTGCACATGCGTGTGCTGGAATAAAAAGTGTCAGTTGTAAAAaa                                                       ]
[+] EMBL BI798597             [                                                                                                                                              GGACATGGTGA CGGTCCCAAGGAGAA GTGAAGGA GGGAC GCCAAGGCGCACGGCAAAGCCGGCCAGGCGAC GCGGCCACGCAAC GGCGAGAAGGAGATGCCCAAGCAGGAGGAGAA GCCGCCAAGGCACAGGCCAA GCCGACGAGCACCAGGAGAGGGCGGAGCACCGCGCCAACGCCACCACGGGCCGCCACGGCACGCGCGTGCCGCTCACGGCCGGCGGCAACCGCCACCACCAC GCTCCGGTCGGCGGCCCCGCCGTCGACCCTGCATACCCGGCCGCCGGCACCGGCACCGGCACCGGCACGTACGCGGCGTCCGACAAATCGTACATCTAGATTTGGGGTAGATGGACATGGGCGGGCTTGATCGATCTGGATCGCTAGTGTGTTTTTTTTCAGTGTAGCGAGTGATCTGGTCCCAGCCCGGCCGCTGATCGTGTTAGCTTGTGTTCGTACGCACGCGTGTATGCTGTGTGCACATGCGTGTGCTGGAATAAAAAGTGTCAGTTGTAAAAaa                                                       ]
[+] EMBL BI797485             [                                                                                                                                                                    GAGAAGTTGAAGGAGGGGACGGCCAAGGCGCACGGCAA GCCGGCCAGGCGACGGCGGCCACGC AC GGCGAGAAGGAGATGGCCAAGCAGGAGGAGAAGGCCGGCAAGGCACAGGCCAAGGCCGACGAGCACCAGGAGAGGGCGGAGCACCGCGCCAACGCCACCACGGGCCGCCACGGCACGCGCGTGCCGCTCACGGCCGGCGGCAACCGCCACCACCAC GCTCCGGTCGGCGGCCCCGCCGTCGACCCTGCATACCCGGCCGCCGGCACCGGCACCGGCACCGGCACGTACGCGGCGTCCGACAAATCGTACATCTAGATTTGGGGTAGATGGACATGGGCGGGCTTGATCGATCTGGATCGCTAGTGTGTTTTTTTTCAGTGTAGCGAGTGATCTGGTCCCAGCCCGGCCGCTGATCGTGTTAGCTTGTGTTCGTACGCACGCGTGTATGCTGTGTGCACATGCGTGTGCTGGAATAAAAAGTGTCAGTTGTAAAATTA         ATGTAGTTCTGTTCAATGAAAGGGCTTTCGTTTTCAAAAAAAAAA]
[+] EMBL BI798543             [                                                                                                                                                                                                                                 CGCAACGGGCGAGAAGGAGAT GCCAA CAGGAGGAGAA GCC GCAA GCACAGCCCAA GCCGACGAGCACCAGGAGA GGCGGAGCACCGCGCCAACGCCACCACGGGCCGCCACGGCACGCGCGTGCCGCTCACGGCCGGCGGCAACCGCCACCACCACAGCTCCGGTCGGCGGCCCC CCGTCGACCCTGCATACCCGGCCGCCGGCACCGGCACCGGCACCGGCACGTACGCGGCGTCCGACAAATCGTACATCTAGATTTGGGGTAGATGGACATGGGCGGGCTTGATCGATCTGGATCGCTAATGTGTTTTTTTTCAGTGTAGCGAGTGATCTGGTCCCAGCCCGGCCGCTGATCGTGTTAGCTTGTGTTCGTACGCACGCGTGTATGCTGTGTGCACATGCGTGTGCTGGAATAAAAAGTGTCAGTTGTAAAATTA         ATGTAGTTCTGTTCAATGAAAGGGCTTTCGTTTTAAAAAAAAAA ]




>consensus_11653#0
ACACGTCGCAAGTCGAAGCACAAAACGCAAGCAACGAATCTCAATCCACAGGCTCACACT
GATACGCAACGCACGTAGCTACTGTACTGTAGGAGCAAAAGAAAAGAAAAGATGCAGACG
GCGAAGGTGAAGGTGCAGGACATGGTGAGCGGTGCCAAGGAGAAGGTGAAGGAGGGGACG
GCCAAGGCGCACGGCAAGGCCGGCCAGGCGACGGCGGCCACGCACGGCGAGAAGGAGATG
GCCAAGCAGGAGGAGAAGGCCGGCAAGGCACAGGCCAAGGCCGACGAGCACCAGGAGAGG
GCGGAGCACCGCGCCAACGCCACCACGGGCCGCCACGGCACGCGCGTGCCGCTCACGGCC
GGCGGCAACCGCCACCACCACGCTCCGGTCGGCGGCCCCGCCGTCGACCCTGCATACCCG
GCCGCCGGCACCGGCACCGGCACCGGCACGTACGCGGCGTCCGACAAATCGTACATCTAG
ATTTGGGGTAGATGGACATGGGCGGGCTTGATCGATCTGGATCGCTAGTGTGTTTTTTTT
CAGTGTAGCGAGTGATCTGGTCCCAGCCCGGCCGCTGATCGTGTTAGCTTGTGTTCGTAC
GCACGCGTGTATGCTGTGTGCACATGCGTGTGCTGGAATAAAAAGTGTCAGTTGTAAAAT
TAACATGCTTGATGTAGTTCTGTTCAATGAAAGGGCTTTCGTTTTCAAAAAAAAAA

consensusID : consensus_11653#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 579
fasta sequence

                              [GCGCACGCAAGCCGCCAGCGACGCGCCACGCACGGCGAGAAGGAGATGGCCAAGCAGGAGGAGAAGGCCGGCAAGGCACAGGCCAAGGCCGACGAG-CACCAGG-AGAGGG-CGGAGCACCGCGCC-AACGCCACCAC-GGGCC-GCCACGGCACGCGCGTGCCGCTCACGGCCGGCGGCAACCGCCACCACCACGCTCCGGTCGGCGGCCCCGCCGTCGACCCTGCATACCC-GCCGCCGGCACCGGCACCGGCACCGGCACGTACGCGGCGTCCGAC-AATCGTACATCTAGATTTGGGGTAGATGGACATGGGCGGGCTTGATCGATCTGGATCGCTAGTGTGTTTTTTTTCAGTGTAGCGAGTGATCTGGTCCCAGCCCGGCCGCTGATCGTGTTAGCTTGTGTTCGTACGCACGCGTGTATGCTGTGTGCACATGCGTGTGCTGGAATAAAAAGTGTCAGTTGTAAAATTAATGTAGTTCTGTTCAATGAAAGGGCTTTCGTTTTCATGTGTTTTTGAAAAACGCATCTACGGATCTACTTATATCGATGAATGTAATCATGTACCGTGTCAAAAAAAAAAA]

[+] EMBL BI795839             [GCGCACGCAAGCCGCCAGCGACGCGCCACGCACGGCGAGAAGGAGATGGCCAAGCAGGAGGAGAAGGCCGGCAAGGCACAGGCCAAGGCCGACGAG CACCAGG AGAGGG CGGAGCACCGCGCC AACGCCACCAC GGGCC GCCACGGCACGCGCGTGCCGCTCACGGCCGGCGGCAACCGCCACCACCACGCTCCGGTCGGCGGCCCCGCCGTCGACCCTGCATACCC GCCGCCGGCACCGGCACCGGCACCGGCACGTACGCGGCGTCCGAC AATCGTACATCTAGATTTGGGGTAGATGGACATGGGCGGGCTTGATCGATCTGGATCGCTAGTGTGTTTTTTTTCAGTGTAGCGAGTGATCTGGTCCCAGCCCGGCCGCTGATCGTGTTAGCTTGTGTTCGTACGCACGCGTGTATGCTGTGTGCACATGCGTGTGCTGGAATAAAAAGTGTCAGTTGTAAAATTAATGTAGTTCTGTTCAATGAAAGGGCTTTCGTTTTCATGTGTTTTTGAAAAA                                                            ]
[+] EMBL BI799834             [                                                                                 GCCAA GCCGACGAGTCACCAGGTAGAGGGTCGGAGCACCGCGCCAAACGCCACCACAGGGCCAGCCACGGCACGCGCGTGCCGCTCACGGCCGGCGGCAACCGCCACCACCACGCTCCGGTCGGCGGCCCCGCCGTCGACCCTGCATACCCGGCCGCCGGCACCGGCACCGGCACCGGCACGTACGCGGCGTCCGACAAATCGTACATCTAGATTTGGGGTAGATGGACATGGGCGGGCTTGATCGATCTGGATCGCTAGTGTGTTTTTTTTCAGTGTAGCGAGTGATCTGGTCCCAGCCCGGCCGCTGATCGTGTTAGCTTGTGTTCGTACGCACGCGTGTATGCTGTGTGCACATGCGTGTGCTGGAATAAAAAGTGTCAGTTGTAAAATTAATGTAGTTCTGTTCAATGAAAGGGCTTTCGTTTTCATGTGTTTTTGAAGTACGCATCTACGGATCTACTTATATCGATGAATGTAATCATGTACCGTGTCAAAAAAAAAAA]




>consensus_11653#1
GCGCACGCAAGCCGCCAGCGACGCGCCACGCACGGCGAGAAGGAGATGGCCAAGCAGGAG
GAGAAGGCCGGCAAGGCACAGGCCAAGGCCGACGAGCACCAGGAGAGGGCGGAGCACCGC
GCCAACGCCACCACGGGCCGCCACGGCACGCGCGTGCCGCTCACGGCCGGCGGCAACCGC
CACCACCACGCTCCGGTCGGCGGCCCCGCCGTCGACCCTGCATACCCGCCGCCGGCACCG
GCACCGGCACCGGCACGTACGCGGCGTCCGACAATCGTACATCTAGATTTGGGGTAGATG
GACATGGGCGGGCTTGATCGATCTGGATCGCTAGTGTGTTTTTTTTCAGTGTAGCGAGTG
ATCTGGTCCCAGCCCGGCCGCTGATCGTGTTAGCTTGTGTTCGTACGCACGCGTGTATGC
TGTGTGCACATGCGTGTGCTGGAATAAAAAGTGTCAGTTGTAAAATTAATGTAGTTCTGT
TCAATGAAAGGGCTTTCGTTTTCATGTGTTTTTGAAAAACGCATCTACGGATCTACTTAT
ATCGATGAATGTAATCATGTACCGTGTCAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11653#0      ACACGTCGCAAGTCGAAGCACAAAACGCAAGCAACGAATCTCAATCCACAGGCTCACACT 60
consensus_11653#1      ------------------------------------------------------------
                                                                                   

consensus_11653#0      GATACGCAACGCACGTAGCTACTGTACTGTAGGAGCAAAAGAAAAGAAAAGATGCAGACG 120
consensus_11653#1      ------------------------------------------------------------
                                                                                   

consensus_11653#0      GCGAAGGTGAAGGTGCAGGACATGGTGAGCGGTGCCAAGGAGAAGGTGAAGGAGGGGACG 180
consensus_11653#1      ------------------------------------------------------------
                                                                                   

consensus_11653#0      GCCAAGGCGCACGGCAAGGCCGGCCAGGCGACGGCGGCCACGCACGGCGAGAAGGAGATG 240
consensus_11653#1      ------GCGCACG-CAAG--CCGCCAG-CGACGC--GCCACGCACGGCGAGAAGGAGATG 48
                             ******* ****  * ***** *****   ************************

consensus_11653#0      GCCAAGCAGGAGGAGAAGGCCGGCAAGGCACAGGCCAAGGCCGACGAGCACCAGGAGAGG 300
consensus_11653#1      GCCAAGCAGGAGGAGAAGGCCGGCAAGGCACAGGCCAAGGCCGACGAGCACCAGGAGAGG 108
                       ************************************************************

consensus_11653#0      GCGGAGCACCGCGCCAACGCCACCACGGGCCGCCACGGCACGCGCGTGCCGCTCACGGCC 360
consensus_11653#1      GCGGAGCACCGCGCCAACGCCACCACGGGCCGCCACGGCACGCGCGTGCCGCTCACGGCC 168
                       ************************************************************

consensus_11653#0      GGCGGCAACCGCCACCACCACGCTCCGGTCGGCGGCCCCGCCGTCGACCCTGCATACCCG 420
consensus_11653#1      GGCGGCAACCGCCACCACCACGCTCCGGTCGGCGGCCCCGCCGTCGACCCTGCATACCCG 228
                       ************************************************************

consensus_11653#0      GCCGCCGGCACCGGCACCGGCACCGGCACGTACGCGGCGTCCGACAAATCGTACATCTAG 480
consensus_11653#1      -CCGCCGGCACCGGCACCGGCACCGGCACGTACGCGGCGTCCGACAA-TCGTACATCTAG 286
                        ********************************************** ************

consensus_11653#0      ATTTGGGGTAGATGGACATGGGCGGGCTTGATCGATCTGGATCGCTAGTGTGTTTTTTTT 540
consensus_11653#1      ATTTGGGGTAGATGGACATGGGCGGGCTTGATCGATCTGGATCGCTAGTGTGTTTTTTTT 346
                       ************************************************************

consensus_11653#0      CAGTGTAGCGAGTGATCTGGTCCCAGCCCGGCCGCTGATCGTGTTAGCTTGTGTTCGTAC 600
consensus_11653#1      CAGTGTAGCGAGTGATCTGGTCCCAGCCCGGCCGCTGATCGTGTTAGCTTGTGTTCGTAC 406
                       ************************************************************

consensus_11653#0      GCACGCGTGTATGCTGTGTGCACATGCGTGTGCTGGAATAAAAAGTGTCAGTTGTAAAAT 660
consensus_11653#1      GCACGCGTGTATGCTGTGTGCACATGCGTGTGCTGGAATAAAAAGTGTCAGTTGTAAAAT 466
                       ************************************************************

consensus_11653#0      TAACATGCTTGATGTAGTTCTGTTCAATGAAAGGGCTTTCGTTTTCAAAAA------AAA 714
consensus_11653#1      TA---------ATGTAGTTCTGTTCAATGAAAGGGCTTTCGTTTTCATGTGTTTTTGAAA 517
                       **         ************************************          ***

consensus_11653#0      AA---------------------------------------------------------- 716
consensus_11653#1      AACGCATCTACGGATCTACTTATATCGATGAATGTAATCATGTACCGTGTCAAAAAAAAA 577
                       **                                                          

consensus_11653#0      --
consensus_11653#1      AA 579