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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11802#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1229 fasta sequence
[CACCACGCCGCCTCGCCTCGACCCGATCTCCTCTCCACCCACCCGATCCACCCGCCGGAGAGGAAGGCCGCCGCCGCCGCCATGCTCAGGGTCGCCGGGAGGCGCCTCACCACCGCCCTCGCCTGGCGCCCCGCCGCGGCGGCCGGCGCCAGGGGCCCGCTCGCCGGGGGCTCCCTCCCCGGCGACGACGAATTCTCGCGTGAGCCCCAGAGGCCGCGCTTCGCCGTGGATTCCCCGTTCTTCGCCGCTTCGAGGGGCTTTTCCTCAGAAACTCTTGTTCCAAGGAACCAGGATGTAAGCTTGACTGAGCTTCCAGCAACAGTGTCAGCTGTGAAGAATCCCAGTGCAAAGATTGTATATGATGAATATAACCATGAAAGATACCAGCCAGGTGACCCAAGTAAAAGAGCGTTTGCATACTTTGTGTTGAGTGGTGGAAGGTTTATTTATGCTTCGCTTCTGCGCTTGCTCGTTTTGAAGTTTGTTCTAAGCATGTCTGCTAGCAAGGATGTTCTTGCTCTTGCTTCCCTTGAGGTGGATCTCTCTAGTATTGAGCCTGGCACCACTGTGACCGTGAAGTGGCGGGGCAAGCCAGTTTTTATCAGGCGCAGGA-CAGAGGAAGACATCAACTTGGC-GA-ACAGCGTTGACATTGGA-TCTCTTCGTGACCCACAGCAGGATGCGGAACGAGTCA-AGAACCCTGAGTGGCTGGTTGTGATTGGGGTGTGTACTCATCTGGGCTGCATTCCACTT-CCCAACGCT-GGTGACTTTGGTGGCT-GGTTCT-GTCCAT-GCCATGGAT-CACAT-T-AT-GATATAT-CA-GGTAGAATCCGTAA-GGGCCCTGCACCATACAACCT-CGAAGTCCCGACCTACT-CATTTCTGGAAGAGA-A-CAAATT-GCT-CAT-CGGCT-GAGATT-ACATTGACCA-CA-GGGTTTAAAAT-CTTAT-GGCACTTCTATT-CTCTGTT-GGTTTG-ACGT-TT-CACC-TTTTTGTTGCT-CTACTTT-G-TTGG-ACACCTT--CTA-GTAAAGAATAATG-AGCTGCTACTTGGCTACTGTTAATT-AAT-TTCCAAGTTTGGTTCT-GTTACCTGAAATCAATAGGAGTTATCTTGTAATTGTCTTACA-AGCTGGCACAGTGAAGCTTATATGTTGTCAACTGACATCCCTTCTCTTC-ATCTTCGTGTATGTGATTGAATGTAGTTGATTTGTTTGTTATGAGAAACTTTTTGCC-ATACTATTTGTGACATCAAAAAGA]
[+] EMBL AK102815 [CACCACGCCGCCTCGCCTCGACCCGATCTCCTCTCCACCCACCCGATCCACCCGCCGGAGAGGAAGGCCGCCGCCGCCGCCATGCTCAGGGTCGCCGGGAGGCGCCTCACCACCGCCCTCGCCTGGCGCCCCGCCGCGGCGGCCGGCGCCAGGGGCCCGCTCGCCGGGGGCTCCCTCCCCGGCGACGACGAATTCTCGCGTGAGCCCCAGAGGCCGCGCTTCGCCGTGGATTCCCCGTTCTTCGCCGCTTCGAGGGGCTTTTCCTCAGAAACTCTTGTTCCAAGGAACCAGGATGTAAGCTTGACTGAGCTTCCAGCAACAGTGTCAGCTGTGAAGAATCCCAGTGCAAAGATTGTATATGATGAATATAACCATGAAAGATACCAGCCAGGTGACCCAAGTAAAAGAGCGTTTGCATACTTTGTGTTGAGTGGTGGAAGGTTTATTTATGCTTCGCTTCTGCGCTTGCTCGTTTTGAAGTTTGTTCTAAGCATGTCTGCTAGCAAGGATGTTCTTGCTCTTGCTTCCCTTGAGGTGGATCTCTCTAGTATTGAGCCTGGCACCACTGTGACCGTGAAGTGGCGGGGCAAGCCAGTTTTTATCAGGCGCAGGA CAGAGGAAGACATCAACTTGGC GA ACAGCGTTGACATTGGA TCTCTTCGTGACCCACAGCAGGATGCGGAACGAGTCA AGAACCCTGAGTGGCTGGTTGTGATTGGGGTGTGTACTCATCTGGGCTGCATTCCACTT CCCAACGCT GGTGACTTTGGTGGCT GGTTCT GTCCAT GCCATGGAT CACAT T AT GATATAT CA GGTAGAATCCGTAA GGGCCCTGCACCATACAACCT CGAAGTCCCGACCTACT CATTTCTGGAAGAGA A CAAATT GCT CAT CGGCT GAGATT ACATTGACCA CA GGGTTTAAAAT CTTAT GGCACTTCTATT CTCTGTT GGTTTG ACGT TT CACC TTTTTGTTGCT CTACTTT G TTGG ACACCTT CTA GTAAAGAATAATG AGCTGCTACTTGGCTACTGTTAATT AAT TTCCAAGTTTGGTTCT GTTACCTGAAATCAATAGGAGTTATCTTGTAATTGTCTTACA AGCTGGCACAGTGAAGCTTATATGTTGTCAACTGACATC ]
[+] EMBL AU068962 [ ncnCCGGTGNGGAAGGCCGCCGNCGCCGCCATGCTCANGGTCGNCGGGANGNCACTCACCACCGCCCTCGCCTGGCGCCCCGCCGCGGC GCCGGCGCCAGGGGCCCGCTCGCCGGGGGCTCCCTCCCCGGCGACGACGAATTCTCGCGTGAGCCCCAGAGGCCGCGCTTCGCCGTGGATTCCCCGTTCTTCGCCGCTTCGAGGGGCTTTTCCTCAGAAACTCTTGTTCCAAGGAACCAGGATGTAAGCTTGACTGAGCTTCCAGCAACAGTGTCAGCTGTGAAGAATCCCAGTGCAAAGATTGTATATGATGAATATAACCATGAAAGATACCAGCCAGGTGACCCAAGTAAAAGAGCGTTTGCATACTTTGTGTTGAGTGGTGGAA GTTTATTTATGCTT ]
[+] EMBL AA751931 [ cgaGCAAAGATTGTATATGATGAATATAACCATGAAAGATACCAGCCAGGTGACCCAAGTAAAAGAGCGTTTGCATACTTTGTGTTGAGTGGTGGAAGGTTTATTTATGCTTCGCTTCTGCGCTTGCTCGTTTTGAAGTTTGTTCTAAGCATGTCTGCTAGCAAGGATGTTCTTGCTCTTGCTTCCCTTGAGGTGGATCTCTCTAGTATTGAGCCTGGCACCACTGTGACCGTGAAGTGGCGGGGCAAGCCAGTTTTTATCAGGCGCAGGA CAGANGAAGACATCAACTTGGC GA ACAGCGTTGACATTGGA TCTCTTCGTGACCCACAGCAGGATGCGGAACGAGTCA AGAACCCTGANTGGCTGGTTGTGATTGGGGTGTGTACTCATCTGGGCTGCATTCCACTT CCCAACGCT GGTGACTTTGGTGGCT GGTTCT GTCCAT GCCATGGAT CACAT T AT GATATAT CA GGTAGAATCCGTAAGGGGCCCTGCACCATACAACCTCCAAAGTCCCGACCTACT CATTTCTGGAANAAA A CAAATT GCT CNT CCGCT GAAATT AC TTGAACA CA GGGTTTAAAAT CTTATGGGCACTTCTATTCCCCTGTTGGGTTTGAACGT TTCCNCCTTTTTTGTTGCTCCCACTTT GTTTGGAACACCTTCCCAATTTAAAAAATAATGAAACTGC ACTTGGCTACTGTatat ]
[+] EMBL BI805630 [ tgcGGGCAAGCCAGTTTTTATCAGGCGCAGGACCAGAGGAAGACATCAACTTGGC GATACAGCGTTGACATTGGA TCTCTTCGTGACCCACAGCAGGATGCGGAACGAGTCANAGAACCCTGAGTGGCTGGTTGTGATTGGGGTGTGTACTCATCTGGGCTGCATTCCACTTGCCCAACGCTGGGTGACTTTGGTGGCTGGGTTCTGGTCCATGGCCATGGATGCACATNTGATGGATATATGCA GGTAGAATCCGTAA GGGCCCTGCACCATACAACCT CGAAGTCCCGACCTACTGCATTTCTGGAAGAGATACCAAATTGGCTGCATGCGGCTGGAGATTGACATTGACCACCANGGGTTTAAAATGCTTATGGGCACTTCTATTGCTCTGTT GGTTTG ACGTNTT CACC TTTTTGTTGCT CTACTTTGG TTGG ACACCTT CTA GTAAAGAATAATG AGCTGCTACTTGGCTACTGTTAATTGAATNTTCCCAGTTTGGTTCT GTTACCTGAAATC ATAGGAGTTATCTTGTAATTGTCTTACATAGCTGGCACAGTGAAGCTTATATGTTGT ]
[+] EMBL BI806697 [ aaCCA TTTTTATCA GCCCAGGA CAGAGGAAGACATCAACTTGGCGGA ACAGC TTGACATTGGATTCTCTTCGTGACCCACA CAGGAT CGGAACGAGTCA AGAA CCTGAGT GCTGTTTGTGATTGGGGTGTGTACTCATCT GGCTGCATTCCACTT CCCAACGCT GGTGACTTTGGT GCT GGTTCT GTCCAT GCCATGGAT CACAT T AT GATATAT CATGGTAGAATCCGTAA GGGCCCTGCACCATACAACCT CGAAGTCCCGACCTACT CATTTCTGGAAGAGA A C AATT GCT CAT CGGCT GAGATT ACATTGACCA CA GGGTTTAAAAT CTTAT GGCACTTCTATT CTCTGTT GGTTTG ACGT TT CACC TTTTTGTTGCT CTACTTT G TTGG ACACCTT CTA GTAAAGAATAATG AGCTGCTACTTGGCTACTGTTAATT AAT TTCCAAGTTTGGTTCTCGTTACCTGAAATC ATAGGAGTTATCTTGTAATTGTCTTACA AGCTGGCACAGTGAAGCTTATATGTTGTCAACTGACATCCCTTCTCTTC ATCTTCGTGTATGTGATTGAATGTAGTTGATTTGTTTGTTATGAGAAACTTTTTGCC ATACTATTTGTGACATCAAAAA ]
[+] EMBL AU165272 [ TCTGTT GGTTTG ACGT TT CACC TTTTTGTTGCT CTACTTT G TTGG ACACCTT CTA GTAAAGAATAATG AGCTGCTACTTGGCTACTGTTAATT AAT TTCCAAGTTTGGTTCT GTTACCTGAAATCAATAGGAGTTATCTTGTAATTGTCTTACA AGCTGGCACAGTGAAGCTTATATGTTGTCAACTGACATCCCTTCTCTTCAATCTTCGTGTATGTGATTGAATGTAGTTGATTTGTTTGTTATGAGAAACTTTTTGCCAATACTATTTGTGACATCAtgatga]
consensusID : consensus_11802#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 392 fasta sequence
[CCATACAACCTCGAAGTCCCGACCTACTCATTTCTGGAAGAGAACAAATTGCTCATCGGCTGAGATTACATTGACCACAGGGTTTAAAATCTTATGGCACTTCTATTCTCTGTTGGTTTGACGTTTCACCTTTTTGTTGCTCTACTTTGTTGGGCACCTT-CTAGTAAAGAATAATGAGCTGCTACTTGGCTACTGTTAATTAATTTCCAAGTTTGGTTCTGTTACCTGAAATCAATAGGAGTTATCTTGTAATTGTCTTACAAGCTGGCACAGTGAAGCTTATATGTTGTCAACTGACATCCCTTCTCTTCAATCTTCGTGTATGTGATTGAATGTAGTTGATTTGTTTGTTATGAGAAGCTTTTTTAAGCTTTTTTTTTTTGGGGGCATGG]
[+] EMBL AU165012 [CCATACAACCTCGAAGTCCCGACCTACTCATTTCTGGAAGAGAACAAATTGCTCATCGGCTGAGATTACATTGACCACAGGGTTTAAAATCTTATGGCACTTCTATTCTCTGTTGGTTTGACGTTTCACCTTTTTGTTGCTCTACTTTGTTGGGCACCTT CTAGTAAAGAATAATGAGCTGCTACTTGGCTACTGTTAATTAATTTCCAAGTTTGGTTCTGTTACCTGAAATCAATAGGAGTTATCTTGTAATTGTCTTACAAGCTGGCACAGTGAAGCTTATATGTTGTCAACTGACATCCCTTCTCTTCAATCTTCGTGTATGTGATTGAATGTAGTTGATTTGTTTGTTATGAGAAGCTT ]
[-] EMBL AU165006 [ CATACAACCTCGAAGTCCCGACCTACTCATTTCTGGAAGAGAACAAATTGCTCATCGGCTGAGATTACATTGACCACAGGGTTTAAAATCTTATGGCACTTCTATTCTCTGTTGGTTTGACGTTTCACCTTTTTGTTGCTCTACTTTGTTGGGCACCTT CTAGTAAAGAATAATGAGCTGCTACTTGGCTACTGTTAATTAATTTCCAAGTTTGGTTCTGTTACCTGAAATCAATAGGAGTTATCTTGTAATTGTCTTACAAGCTGGCACAGTGAAGCTTATATGTTGTCAACTGACATCCCTTCTCTTCAATCTTCGTGTATGTGATTGAATGTAGTTGATTTGTTTGTTATGAGAAGCTTTTTTAAGCTTTTTTTTTTTGGGGGCATGG]
[-] EMBL AU165074 [ CATACAACCTCGAAGTCCCGACCTACTCATTTCTGGAAGAGAACAAATTGCTCATCGGCTGAGATTACATTGACCACAGGGTTTAAAATCTTATGGCACTTCTATTCTCTGTTGGTTTGACGTTTCACCTTTTTGTTGCTCTACTTTGTTGGGCACCTTCCTAGTAAAGAATAATGAGCTGCTACTTGGCTACTGTTAATTAAaaaa ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11802#0 CACCACGCCGCCTCGCCTCGACCCGATCTCCTCTCCACCCACCCGATCCACCCGCCGGAG 60
consensus_11802#1 ------------------------------------------------------------
consensus_11802#0 AGGAAGGCCGCCGCCGCCGCCATGCTCAGGGTCGCCGGGAGGCGCCTCACCACCGCCCTC 120
consensus_11802#1 ------------------------------------------------------------
consensus_11802#0 GCCTGGCGCCCCGCCGCGGCGGCCGGCGCCAGGGGCCCGCTCGCCGGGGGCTCCCTCCCC 180
consensus_11802#1 ------------------------------------------------------------
consensus_11802#0 GGCGACGACGAATTCTCGCGTGAGCCCCAGAGGCCGCGCTTCGCCGTGGATTCCCCGTTC 240
consensus_11802#1 ------------------------------------------------------------
consensus_11802#0 TTCGCCGCTTCGAGGGGCTTTTCCTCAGAAACTCTTGTTCCAAGGAACCAGGATGTAAGC 300
consensus_11802#1 ------------------------------------------------------------
consensus_11802#0 TTGACTGAGCTTCCAGCAACAGTGTCAGCTGTGAAGAATCCCAGTGCAAAGATTGTATAT 360
consensus_11802#1 ------------------------------------------------------------
consensus_11802#0 GATGAATATAACCATGAAAGATACCAGCCAGGTGACCCAAGTAAAAGAGCGTTTGCATAC 420
consensus_11802#1 ------------------------------------------------------------
consensus_11802#0 TTTGTGTTGAGTGGTGGAAGGTTTATTTATGCTTCGCTTCTGCGCTTGCTCGTTTTGAAG 480
consensus_11802#1 ------------------------------------------------------------
consensus_11802#0 TTTGTTCTAAGCATGTCTGCTAGCAAGGATGTTCTTGCTCTTGCTTCCCTTGAGGTGGAT 540
consensus_11802#1 ------------------------------------------------------------
consensus_11802#0 CTCTCTAGTATTGAGCCTGGCACCACTGTGACCGTGAAGTGGCGGGGCAAGCCAGTTTTT 600
consensus_11802#1 ------------------------------------------------------------
consensus_11802#0 ATCAGGCGCAGGACAGAGGAAGACATCAACTTGGCGAACAGCGTTGACATTGGATCTCTT 660
consensus_11802#1 ------------------------------------------------------------
consensus_11802#0 CGTGACCCACAGCAGGATGCGGAACGAGTCAAGAACCCTGAGTGGCTGGTTGTGATTGGG 720
consensus_11802#1 ------------------------------------------------------------
consensus_11802#0 GTGTGTACTCATCTGGGCTGCATTCCACTTCCCAACGCTGGTGACTTTGGTGGCTGGTTC 780
consensus_11802#1 ------------------------------------------------------------
consensus_11802#0 TGTCCATGCCATGGATCACATTATGATATATCAGGTAGAATCCGTAAGGGCCCTGCACCA 840
consensus_11802#1 ---------------------------------------------------------CCA 3
***
consensus_11802#0 TACAACCTCGAAGTCCCGACCTACTCATTTCTGGAAGAGAACAAATTGCTCATCGGCTGA 900
consensus_11802#1 TACAACCTCGAAGTCCCGACCTACTCATTTCTGGAAGAGAACAAATTGCTCATCGGCTGA 63
************************************************************
consensus_11802#0 GATTACATTGACCACAGGGTTTAAAATCTTATGGCACTTCTATTCTCTGTTGGTTTGACG 960
consensus_11802#1 GATTACATTGACCACAGGGTTTAAAATCTTATGGCACTTCTATTCTCTGTTGGTTTGACG 123
************************************************************
consensus_11802#0 TTTCACCTTTTTGTTGCTCTACTTTGTTGGACACCTTCTAGTAAAGAATAATGAGCTGCT 1020
consensus_11802#1 TTTCACCTTTTTGTTGCTCTACTTTGTTGGGCACCTTCTAGTAAAGAATAATGAGCTGCT 183
****************************** *****************************
consensus_11802#0 ACTTGGCTACTGTTAATTAATTTCCAAGTTTGGTTCTGTTACCTGAAATCAATAGGAGTT 1080
consensus_11802#1 ACTTGGCTACTGTTAATTAATTTCCAAGTTTGGTTCTGTTACCTGAAATCAATAGGAGTT 243
************************************************************
consensus_11802#0 ATCTTGTAATTGTCTTACAAGCTGGCACAGTGAAGCTTATATGTTGTCAACTGACATCCC 1140
consensus_11802#1 ATCTTGTAATTGTCTTACAAGCTGGCACAGTGAAGCTTATATGTTGTCAACTGACATCCC 303
************************************************************
consensus_11802#0 TTCTCTTCA-TCTTCGTGTATGTGATTGAATGTAGTTGATTTGTTTGTTATGAGAAACTT 1199
consensus_11802#1 TTCTCTTCAATCTTCGTGTATGTGATTGAATGTAGTTGATTTGTTTGTTATGAGAAGCTT 363
********* ********************************************** ***
consensus_11802#0 TTT--GCCATACTATTTGTGACATCAAAAAGA 1229
consensus_11802#1 TTTTAAGCTTTTTTTTTTTGGGGGCATGG--- 392
*** * * * *** ** **
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||