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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11838#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1113 fasta sequence
[CCAAAGGAACTTGTTTTTTGTATTTTTCTTTTCGGTAGCTACTTTCTACATCTCTCTTATTTGGATCACGTATTATCCTTTTTCATTCCACGACCGACGACCAATGTTCCGACACCTCGCCGCCCTGATCCTGTCCGCCGTCGTCTTGGCGGCGTCCACAAGCTCCGGCGTCGTCGATGCCCGTCCTGTCCACACCGGCCCGTACCACGTCGTCATCAGAACCGCCGCCAAGCCCAGCCGTCGCCTGATCGGGCTCGGCGGCAATGCCGCCA-T-ATGCCAAGAGGTGCACTACAAGGCGCTGTGCGGCACGCTG-ACGACGCTGCCGGGGGTGATGACGCCGCAGCAGCTGCTGGACGCGGCGTTGCGGGTGGCGGAGTCCAAGGCCATGATGGCGGAGAAGCGGC-TGGCCGACGTGATGAAGTCGCGCGCGGTGAAGGCCGAAGGCACGAGCATGTCGTCGACGCTCGACACGTGCAAGGGCGCCTACTCGTCGCTGGCCGACGCGCTGCAGAAGGCGCGCGACACGATCAAGAGCGGCGGCAGCCACGACGACCTGATGACCGAGCTGTCGTCCGCCTCCACCTTCTCCACCGACTGCGGGGAAGCCTTCGACGAGTTCCCGGACCTCACGTCGCCCATACCCGGGGCGCAGCGCCACGTCAACCGCCTCGTCAGCAACTGCCTCGACCTGGCTGCCACCATCAAAGAAAACTGATCGATGGCGTGGACGCACACGTGCCGCGCCGGCCGGCCGCGCTAGGTTTGTAGGCTGCTTCTGGCTGCAGGCGAGCGTGCAAGGCTA-CAACGACACGTACTGCATGTACTGCGCACACTCTG-CCTTTTCATGTACGT-ATACGTGT-GTACT-AGC-GTAC-ATGGTG-TCTG-TATGTACACTGG-TCATGGGGAGAATGGGGAGAGCATGCAGTGCGTATGTTTTTATCAATATTTCTCGCAGCGGCATATATAGGCGTCTTGGTCTTGGAGATTAGCAAAAAAAAAGAAAAAGTGTTGTAGTTGAGTCCGGGATATATTTGTGCATCAGTGCATGGGAGGTTGATCGCCCAGAAAGGTATATATAATGTACTTCCTTATTAAATACAAGTTACTACATAAAAA]
[+] EMBL AK069992 [CCAAAGGAACTTGTTTTTTGTATTTTTCTTTTCGGTAGCTACTTTCTACATCTCTCTTATTTGGATCACGTATTATCCTTTTTCATTCCACGACCGACGACCAATGTTCCGACACCTCGCCGCCCTGATCCTGTCCGCCGTCGTCTTGGCGGCGTCCACAAGCTCCGGCGTCGTCGATGCCCGTCCTGTCCACACCGGCCCGTACCACGTCGTCATCAGAACCGCCGCCAAGCCCAGCCGTCGCCTGATCGGGCTCGGCGGCAATGCCGCCA T ATGCCAAGAGGTGCACTACAAGGCGCTGTGCGGCACGCTG ACGACGCTGCCGGGGGTGATGACGCCGCAGCAGCTGCTGGACGCGGCGTTGCGGGTGGCGGAGTCCAAGGCCATGATGGCGGAGAAGCGGC TGGCCGACGTGATGAAGTCGCGCGCGGTGAAGGCCGAAGGCACGAGCATGTCGTCGACGCTCGACACGTGCAAGGGCGCCTACTCGTCGCTGGCCGACGCGCTGCAGAAGGCGCGCGACACGATCAAGAGCGGCGGCAGCCACGACGACCTGATGACCGAGCTGTCGTCCGCCTCCACCTTCTCCACCGACTGCGGGGAAGCCTTCGACGAGTTCCCGGACCTCACGTCGCCCATACCCGGGGCGCAGCGCCACGTCAACCGCCTCGTCAGCAACTGCCTCGACCTGGCTGCCACCATCAAAGAAAACTGATCGATGGCGTGGACGCACACGTGCCGCGCCGGCCGGCCGCGCTAGGTTTGTAGGCTGCTTCTGGCTGCAGGCGAGCGTGCAAGGCTA CAACGACACGTACTGCATGTACTGCGCACACTCTG CCTTTTCATGTACGT ATACGTGT GTACT AGC GTAC ATGGTG TCTG TATGTACACTGG TCATGGGGAGAATGGGGAGAGCATGCAGTGCGTATGTTTTTATCAATATTTCTCGCAGCGGCATATATAGGCGTCTTGGTCTT ]
[+] EMBL AU088630 [ TGTTTTTTGTATTTTTCTTTTCGGTAGCTACTTTCTACATCTCTCTTATTTGGATCACGTATTATCCTTTTTCATTCCACGACCGACGACCAATGTTCCGACACCTCGCCGCCCTGATCCTGTCCGCCGTCGTCTTGGCGGCGTCCACAAGCTCCGGCGTCGTCGATGCCCGTCCTGTCCACACCGGCCCGTACCACGTCGTCATCAGAACCGCCGCCAAGCCCAGCCGTCGCCTGATCGGGCTCGGCGGCAATGCCGCCA T ATGCCAAGAGGTGCACTACAAGGCGCTGTGCGGCACG TGAACGACGCTGCCGGGGGTGATGACGCCGCAGCAGCTGCTGGACGCGGCGTTGCGGGTGGCGGAGTCCAAGGCCATGATGGCGGAGAAGC ]
[+] EMBL AU094075 [ TTTTTGTATTTTTCTTTTCGGTAGCTACTTTCTACATCTCTCTTATTTGGATCACGTATTATCCTTTTTCATTCCACGACCGACGACCAATGTTCCGACACCTCGCCGCCCTGATCCTGTCCGCCGTCGTCTTGGCGGCGTCCACAAGCTCCGGCGTCGTCGATGCCCGTCCTGTCCACACCGGCCCGTACCACGTCGTCATCAGAACCGCCGCCAAGCCCAGCCGTCGCCTGATCGGGCTCGGCGGCAATGCCGCCATT ATGCCAAGAGGTGCACTACAAGGCGCTGTGCGGCACGNTG ACGACGCTGCCGGGGGTGATGACGCCGCAGCAGCTGCTGGACGCGGCGTTGCGGGTGGCGGAGTCCAAGGCCATGATGGCGGAGAA ]
[-] EMBL C98707 [ TTTTCTTTTCGGTAGCTACTTTCTACATCTCTCTTATTTGGATCACGTATTATCCTTTTTCATTCCACGACCGACGACCAATGTTCCGACACCTCGCCGCCCTGATCCTGTCCGCCGTCGTCTTGGCGGCGTCCACAAGCTCCGGCGTCGTCGATGCCCGTCCTGTCCACACCGGCCCGTACCACGTCGTCATCAGAACCGCCGCCAAGCCCAGCCGTCGCCTGATCGGGCTCGGCGGCAATG CGCAN T ATGCCAAGAGGTGCACTACAAGGCGCTGTG GGCACNCTG ACGACGCTGCCGGGGGTGATGACGCCGCAGCAGCTGCTGGACGCGGCGTTGCGGGTGGCGGAGTCCAAGGCCATGATGGCGGAGAAGCGGCTTGCCCGACGTGATGAAGTCGCGCGCGGTGAAAGCC ]
[+] EMBL OSR16241A [ ATGTTCCGACACCTCGCCGCCCTGATCCTGTCCGCCGTCGTCTTGGCGGCGTCCACAAGCTCCGGCGTCGTCGATGCCCGTCCTGTCCACACCGGCCCGTACCACGTCGTCATCAGAACCGCCGCCAAGCCCAGCCGTCGCCTGATCGGGCTCGGCGGCAATGCC CAN TNATGCCAAGAGGTGCACTACAAGGCGCTGTGCGGCACGTTG ACGACGCTGCCGGGGGTGATGACGCCGCAGCAGCTGCTGGACGCGGCGTTGCGGGTGGCGGAGTCCAAGGCCATGATGGCGGAGAAGCGGC TGGNCGACGTGATGAAGTCGCGCGCGGTGAAGGCCGAAGa ]
[+] EMBL AU184217 [ TCCNCCTTNTCCACCGACTGCGGGGAAGCCTTCGACGAGTTCCCGGACCTCACGTCGCCCATACCCGGGGCGCAGCGCCACGTCAACCGCCTCGTCAGCAACTGCCTCGACCTGGCTGCCACCATCAAAGAAAACTGATCGATGGCGTGGACGCACACGTGCCGCGCCGGCCGGCCGCGCTAGGTTTGTAGGCTGCTTCTGGCTGCAGGCGAGCGTGCAAGGCTACCACCGACACGTACTGCATGTACTGCGCACACTCTGCCCTTTTCATGTACGTAATACGTGTGGTACTAANCGGTACAATGGTGNTCTGNTATNTNCACTGGNTCATGGGAAAAATGGGGAAAGCATNCAGTGCGTATGTTTTTATCAATATTTCTCGCANCGGCATATATAGGCGTCTTGGTCTTGGAGATTAGCAAAAAAAAA ]
[+] EMBL C98705 [ TCCCGGACCTCACGTCGCCCATACCCGGGGCGCAGCGCCACGTCAACCGCCTCGTCAGCAACTGCCTCGACCTGGCTGCCACCATCAAAGAAAACTGATCGATGGCGTGGACGCACACGTGCCGCGCCGGCCGGCCGCGCTAGGTTTGTAGGCTGCTTCTGGCTGCAGGCGAGCGTGCAAGGCTA CAACGACACGTACTGCATGTACTGCGCACACTCTG CCTTTTCATGTACGT ATACGTGT GTACT AGC GTAC ATGGTG TCTG TATGTACACTGG TCATGGGGAGAATGGGGAGAGCATGCAGTGCGTATGTTTTTATCAATATTTCTCGCAGCGGCATATATAGGCGTCTTGGTCTTGGAGATTAGCAAAAAGAAAGAAAAAGTGTTGTAGTTGAGTCCGGGATATATTTGTGCATCAGTGCATGGGAGGTTGATCGCCCAGAAAGGTATATATAATGTACTTCCTTATTAAATACAAGTTACTACATAAAAA]
consensusID : consensus_11838#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 413 fasta sequence
[TTCGGTAGCTACTTTCTACATCTCTCTTATTTGGATCACGTATTATCCTTTTTCATTCCACGACCGACGACCAATGTTCCGACACCTCGCCGCCCTGATCCTGTCCGCCGTCGTCTTGGCGGCGTCCACAAGCTCCGGCGTCGTCGATGCCCGTCCTGTCCACACCGGCCCGTACCACGTCGTCATCAGAACCGCCGCCAAGCCCAGCCGTCGCCTGATCGGGCTCGGCGGCAATGCGCAGTATGCCAAGAGGTATAGCTAATTAAGGATCGACCAGTGAGCACTACTACACACACTACACCGACATAGGTACGCACGACGCATCGAAATTAACCCGCATGCCATTTATATATGCGTGCGTGCATTGGCATGACATATGATGCAGGTGCACTACAAGGCGCTGTNNGGCACGT]
[+] EMBL C72619 [TTCGGTAGCTACTTTCTACATCTCTCTTATTTGGATCACGTATTATCCTTTTTCATTCCACGACCGACGACCAATGTTCCGACACCTCGCCGCCCTGATCCTGTCCGCCGTCGTCTTGGCGGCGTCCACAAGCTCCGGCGTCGTCGATGCCCGTCCTGTCCACACCGGCCCGTACCACGTCGTCATCAGAACCGCCGCCAAGCCCAGCCGTCGCCTGATCGGGCTCGGCGGCAATGCGCAGTATGCCAAGAGGTATAGCTAATTAAGGATCGACCAGTGAGCACTACTACACACACTACACCGACATAGGTACGCACGACGCATCGAAATTAACCCGCATGCCATTTATATATGCGTGCGTGCATTGGCATGACATATGATGCAGGTGCACTACAAGGCGCTGTNNGGCACGT]
consensusID : consensus_11838#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 291 fasta sequence
[GNTATTTTCTTTTTCGGTAGCTACTTTNTACATCTTTTTAATTTGGNTCACGTATTATCCTTTTCAATTCCACGACCGACGACCAATGTNCCNACACCTCGCCGCCCTGATCCTGTCCGCGGTNGTNTTGGCGGCGTCCACAAGCTCCGGCGTCGTCNATGCCCGTCCTGTCCACACCGGCCCGTACCACGTGGTCATCAGAACCGCCGCCAAGCCCAGCNGTCGCCTGATCGGGCTCGGCGGCAATGNCGCATTATGCNAAGAGGTGCACTACAAGGNGCTGTGCGGCAC]
[+] EMBL C93603 [GNTATTTTCTTTTTCGGTAGCTACTTTNTACATCTTTTTAATTTGGNTCACGTATTATCCTTTTCAATTCCACGACCGACGACCAATGTNCCNACACCTCGCCGCCCTGATCCTGTCCGCGGTNGTNTTGGCGGCGTCCACAAGCTCCGGCGTCGTCNATGCCCGTCCTGTCCACACCGGCCCGTACCACGTGGTCATCAGAACCGCCGCCAAGCCCAGCNGTCGCCTGATCGGGCTCGGCGGCAATGNCGCATTATGCNAAGAGGTGCACTACAAGGNGCTGTGCGGCAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11838#0 CCAAAGGAACTTGTTTTTTGTATTTTTCTTTTCGGTAGCTACTTTCTACATCTCTCTTAT 60
consensus_11838#2 ------------------GNTATTTTCTTTTTCGGTAGCTACTTTNTACATCTTTTTAAT 42
consensus_11838#1 ------------------------------TTCGGTAGCTACTTTCTACATCTCTCTTAT 30
*************** ******* * * **
consensus_11838#0 TTGGATCACGTATTATCCTTTTTCATTCCACGACCGACGACCAATGTTCCGACACCTCGC 120
consensus_11838#2 TTGGNTCACGTATTATCCTTTTCAATTCCACGACCGACGACCAATGTNCCNACACCTCGC 102
consensus_11838#1 TTGGATCACGTATTATCCTTTTTCATTCCACGACCGACGACCAATGTTCCGACACCTCGC 90
**** ***************** *********************** ** *********
consensus_11838#0 CGCCCTGATCCTGTCCGCCGTCGTCTTGGCGGCGTCCACAAGCTCCGGCGTCGTCGATGC 180
consensus_11838#2 CGCCCTGATCCTGTCCGCGGTNGTNTTGGCGGCGTCCACAAGCTCCGGCGTCGTCNATGC 162
consensus_11838#1 CGCCCTGATCCTGTCCGCCGTCGTCTTGGCGGCGTCCACAAGCTCCGGCGTCGTCGATGC 150
****************** ** ** ****************************** ****
consensus_11838#0 CCGTCCTGTCCACACCGGCCCGTACCACGTCGTCATCAGAACCGCCGCCAAGCCCAGCCG 240
consensus_11838#2 CCGTCCTGTCCACACCGGCCCGTACCACGTGGTCATCAGAACCGCCGCCAAGCCCAGCNG 222
consensus_11838#1 CCGTCCTGTCCACACCGGCCCGTACCACGTCGTCATCAGAACCGCCGCCAAGCCCAGCCG 210
****************************** *************************** *
consensus_11838#0 TCGCCTGATCGGGCTCGGCGGCAATGCCGCCATATGCCAAGAGGTGCACTACAAGGCGCT 300
consensus_11838#2 TCGCCTGATCGGGCTCGGCGGCAATGNCGCATTATGCNAAGAGGTGCACTACAAGGNGCT 282
consensus_11838#1 TCGCCTGATCGGGCTCGGCGGCAATGC-GCAGTATGCCAAGAGGTATA--GCTAATTAAG 267
************************** ** ***** ******* * * *
consensus_11838#0 GTGCGGCACGCTGACGACGCTGCCGGGGGTGATGACGCCGCAGCAGCTGCTGGACGCGGC 360
consensus_11838#2 GTGCGGCAC--------------------------------------------------- 291
consensus_11838#1 GATCGAC-CAGTGA--GCACTACTACACACACT-ACACCGACATAGGTAC-GCACGACGC 322
* ** * *
consensus_11838#0 GTTGCGGGTGGCGGAGTCCAAGGCCATGATGGCGGAGAAGCGGCTGGCCGACGTGATGAA 420
consensus_11838#2 ------------------------------------------------------------
consensus_11838#1 ATCGAAATTAACCCGCATGCCATTTATATATGCGTGCGTGCATTGGCATGACAT-ATGAT 381
consensus_11838#0 GTCGCGCGCGGTGAAGGCCGAAGGCACGAGCATGTCGTCGACGCTCGACACGTGCAAGGG 480
consensus_11838#2 ------------------------------------------------------------
consensus_11838#1 G-CAGGTGCACTACAAGGCGCTGTNNGGCACGT--------------------------- 413
consensus_11838#0 CGCCTACTCGTCGCTGGCCGACGCGCTGCAGAAGGCGCGCGACACGATCAAGAGCGGCGG 540
consensus_11838#2 ------------------------------------------------------------
consensus_11838#1 ------------------------------------------------------------
consensus_11838#0 CAGCCACGACGACCTGATGACCGAGCTGTCGTCCGCCTCCACCTTCTCCACCGACTGCGG 600
consensus_11838#2 ------------------------------------------------------------
consensus_11838#1 ------------------------------------------------------------
consensus_11838#0 GGAAGCCTTCGACGAGTTCCCGGACCTCACGTCGCCCATACCCGGGGCGCAGCGCCACGT 660
consensus_11838#2 ------------------------------------------------------------
consensus_11838#1 ------------------------------------------------------------
consensus_11838#0 CAACCGCCTCGTCAGCAACTGCCTCGACCTGGCTGCCACCATCAAAGAAAACTGATCGAT 720
consensus_11838#2 ------------------------------------------------------------
consensus_11838#1 ------------------------------------------------------------
consensus_11838#0 GGCGTGGACGCACACGTGCCGCGCCGGCCGGCCGCGCTAGGTTTGTAGGCTGCTTCTGGC 780
consensus_11838#2 ------------------------------------------------------------
consensus_11838#1 ------------------------------------------------------------
consensus_11838#0 TGCAGGCGAGCGTGCAAGGCTACAACGACACGTACTGCATGTACTGCGCACACTCTGCCT 840
consensus_11838#2 ------------------------------------------------------------
consensus_11838#1 ------------------------------------------------------------
consensus_11838#0 TTTCATGTACGTATACGTGTGTACTAGCGTACATGGTGTCTGTATGTACACTGGTCATGG 900
consensus_11838#2 ------------------------------------------------------------
consensus_11838#1 ------------------------------------------------------------
consensus_11838#0 GGAGAATGGGGAGAGCATGCAGTGCGTATGTTTTTATCAATATTTCTCGCAGCGGCATAT 960
consensus_11838#2 ------------------------------------------------------------
consensus_11838#1 ------------------------------------------------------------
consensus_11838#0 ATAGGCGTCTTGGTCTTGGAGATTAGCAAAAAAAAAGAAAAAGTGTTGTAGTTGAGTCCG 1020
consensus_11838#2 ------------------------------------------------------------
consensus_11838#1 ------------------------------------------------------------
consensus_11838#0 GGATATATTTGTGCATCAGTGCATGGGAGGTTGATCGCCCAGAAAGGTATATATAATGTA 1080
consensus_11838#2 ------------------------------------------------------------
consensus_11838#1 ------------------------------------------------------------
consensus_11838#0 CTTCCTTATTAAATACAAGTTACTACATAAAAA 1113
consensus_11838#2 ---------------------------------
consensus_11838#1 ---------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||