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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11851#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 662 fasta sequence
[GCTGCAACAATGGCCACCTCTCCTATGCTCTTCCTTGTCTCCCTCCTACTAGTACTAGTCGCCGCCGCCACTGGCGACGAGGCATCGCCGT-CGAACGCGGCGGCGCCGGCGGCCC--GTGCTGGTCGGCGGGAGGACGGAGATCAGGGACGTGGGCAGCAACAAGGCGGTGCAGTCGCTGGGCCGCTTCGCCGTCGCCGAGCACAACGCCGCCTCCGCACGGCGGCTCCGGCGGCCCCGCGAACCCCGTCCCGGTGAAGCTCGCGTTCGCACGCGTCGTGGAGGCGCAGAAGCAGGTCGTCTCCGGCGTGGCCTACTACCTCAAGGTCGCCGCGAGCGCGAGGGACCC-CC-GCGGCGGCGCCGCCGCCGGCGGTGACCGGGTGTTCGACGCCGTGGTGGTGGTGAAGGCCTGGCTCAAATCCAAGGAGCTCGTCTCCTTCACGCCTGCTTCTTCTACCAAATAATCATGCTCAAATATATGTATTAGTTTCACTCTAATTATATTAATTATTACTAGTTGGACTTTACTCCCTCCGTCTAATAAAAAATCAACCCTAGTACGGATGTAATACATTATAGTACTACGAATCAGACATCCGGTACCATAGTTTTTTATGGAACGGAGATATTAGTTTTTTATGGGACGGATGGAATATTACGAAGCA]
[+] EMBL OS0297A [GCTGCAACAATGGCCACCTCTCCTATGCTCTTCCTTGTCTCCCTCCTACTAGTACTAGTCGCCGCCGCCACTGGCGACGAGGCATCGCCGT CGAACGCGGCGGCGCCGGCGGCCC GTGCTGGTCGGCGGGAGGACGGAGATCAGGGACGTGGGCAGCAACAAGGCGGTGCAGTCGCTGGGCCGCTTCGCCGTCGCCGAGCACAACGCCGCCTCCGCACGGCGGCTCCGGCGGCCCCGCGAACCCCGTCCCGGTGAAGCTTGCGTTCGAACGCGTCGTGGAGGCGCAGAAGCAGGTCGTCTNCGGCGTGGCCTACTAACTCAAGGTCGCCGCGAGCG ]
[+] EMBL OSC25031 [ CAATGGCCACCTCTCCTATGCTCTTCCTTGTCTCCCTCCTACTAGTACTAGTNGCCGCCGCCACTGGCGACGAGGCATCGNCGTCCGAACGCGGCGGCGCCGGCGGCGCNNTTNCTGGTCGGCGGGAGGACGGAGATCAGGGACGTGGGCAGCAACAAGGCGGTGCAGTCGCTGGGCCGNTTCGCCGTCGCC ]
[+] EMBL AK063869 [ AAGCTCGCGTTCGCACGCGTCGTGGAGGCGCAGAAGCAGGTCGTCTCCGGCGTGGCCTACTACCTCAAGGTCGCCGCGAGCGCGAGGGACCC CC GCGGCGGCGCCGCCGCCGGCGGTGACCGGGTGTTCGACGCCGTGGTGGTGGTGAAGGCCTGGCTCAAATCCAAGGAGCTCGTCTCCTTCACGCCTGCTTCTTCTACCAAATAATCATGCTCAAATATATGTATTAGTTTCACTCTAATTATATTAATTATTACTAGTTGGACTTTACTCCCTCCGTCTAATAAAAAATCAACCCTAGTACGGATGTAATACATTATAGTACTACGAATCAGACATCCGGTACCATAGTTTTTTATGGAACGGAGATA ]
[+] EMBL AK102139 [ AAGCTCGCGTTCGCACGCGTCGTGGAGGCGCAGAAGCAGGTCGTCTCCGGCGTGGCCTACTACCTCAAGGTCGCCGCGAGCGCGAGGGACCC CC GCGGCGGCGCCGCCGCCGGCGGTGACCGGGTGTTCGACGCCGTGGTGGTGGTGAAGGCCTGGCTCAAATCCAAGGAGCTCGTCTCCTTCACGCCTGCTTCTTCTACCAAATAATCATGCTCAAATATATGTATTAGTTTCACTCTAATTATATTAATTATTACTAGTTGGACTTTACTCCCTCCGTCTAATAAAAAATCAACCCTAGTACGGATGTAATACATTATAGTACTACGAATCAGACATCCGGTACCATAGTTTTTTATGGAACGGAGATA ]
[+] EMBL AU031350 [ AAGNTC CGTTCGCACGCGTCGTGGAGGCGCAGAAGCAGGTCGTCTCCGGCGTGGCCTACTACCTCAAGGTCGCCGCGAGCGCGAGGGACCCNCCNGC GCGGCGCC CCGCCGGCGGTGACCGGGTGTTCGACGCCGTGGTGGTGGTGAAGGCCTGGCTCAAATCCAAGGAGCTCGTCTCCTTCACGCCTGCTTCTTCTACCAAATAATCATGCTCAAATATATGTATTAGTTTCACTCTAATTATATTAATTATTACTAGTTGGACTTTAaaaa ]
[+] EMBL CA755482 [ AAGCTCGCGTTCGCACGCGTCGTGGAGGCGCAGAAGCAGGTCGTCTCCGGCGTGGCCTACTACCTCAAGGTCGCCGCGAGCGCGAGGGACCC CC GCGGCGGCGCCGCCGCCGGCGGTGACCGGGTGTTCGACGCCGTGGTGGTGGTGAAGGCCTGGCTCANATCCAAGGAGCTCGTCTCCTTCACGCCTGCTTCTTCTACCANATAATCATGCTCANATATATGTATTAGTTTCACTCTAATTATATTAATTATTACTAGGTGGACTTTACTCCCTCCGTCTAATAAAAAATCAACCCTAGTACGGATGTAATACATTATAGTACTACGAATCAGACATCGGGTACCATAGTTTTTTATGGAACGGAGATATTAGTTTTTTATGGGACGGATGGAATATTACGAAGCA]
[+] EMBL AU063238 [ CCGGGTGTTCGACGCCGTGGTGGTGGTGAAGGCCTGGCTCAAATCCAAGGAGCTCGTCTCCTTCACGCCTGCTTCTTCTACCAAATAATCATGCTCAAATATATGTATTAGTTTCACTCTAATTATATTAATTATTACTAGTTGGACTTTACTCCCTCCGTCTAATAAAAAATCAACCCTAGTACGGATGTAAaaa ]
consensusID : consensus_11851#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 529 fasta sequence
[GCTGCAACAATGGCCACCTCTCCCCTGCTCCTCCTCCTCCTCCTACTAGTCGCCGCCGCCGCTGCTGCCGGCGACGAGGCATCGCTGTCGCCGTCGAACGCGGCTGGCGCCGGCGGCGCCGGCGGCGCCCGTGCTGGTCGGCGGGAGGACGGAGATCAGGGACGTGGGCGGCAACAAGGCGGTGCAGTCGCTGGGCCGCTTCGCCGTCGCCGAGCACAACCGCCGCCTTCGCCATGGCTCCTGCGGGCCCGCCGACCCCGTCCCGGTGAAGATCGCGTTCGCACGCGCCGTGGAGGCGCAGAAGCAAAGTCGTTCCTGCGTGGCCTACTACCTCAAGGGCGTCGCGAGGGGACCCCGCGGGGGGGCCGCCCCCCGGGAACTGGTGTTTGACTCCCCGCGGGGGGTGAAGGACTTGTTCATAGTTCAAAGAGATCTTCTGCTTTCAAGCTCCTGGCTTTAACCAATAATACCCCCTACATATAGATTGTGGCTCCCCCCCACTAATTAATATTACTAGTGGGGCTTTCTT]
[+] EMBL BE040903 [GCTGCAACAATGGCCACCTCTCCCCTGCTCCTCCTCCTCCTCCTACTAGTCGCCGCCGCCGCTGCTGCCGGCGACGAGGCATCGCTGTCGCCGTCGAACGCGGCTGGCGCCGGCGGCGCCGGCGGCGCCCGTGCTGGTCGGCGGGAGGACGGAGATCAGGGACGTGGGCGGCAACAAGGCGGTGCAGTCGCTGGGCCGCTTCGCCGTCGCCGAGCACAACCGCCGCCTTCGCCATGGCTCCTGCGGGCCCGCCGACCCCGTCCCGGTGAAGATCGCGTTCGCACGCGCCGTGGAGGCGCAGAAGCAAAGTCGTTCCTGCGTGGCCTACTACCTCAAGGGCGTCGCGAGGGGACCCCGCGGGGGGGCCGCCCCCCGGGAACTGGTGTTTGACTCCCCGCGGGGGGTGAAGGACTTGTTCATAGTTCAAAGAGATCTTCTGCTTTCAAGCTCCTGGCTTTAACCAATAATACCCCCTACATATAGATTGTGGCTCCCCCCCACTAATTAATATTACTAGTGGGGCTTTCTT]
consensusID : consensus_11851#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 281 fasta sequence
[AGGGACCCGCGCGGCGGCGCCGCCGCCGGCGACCGGGTGTTCGACGCCGTGGTGGTGGTGAAGGCCTGGCTCAAGTCCAAGGAGCTCGTCTCCTTCACGCCTGCTGCTTCTACCAAATAATCCGCTCAATTATATGTATTAGTTTCACTCTAATTAATTAATTATTACTAGTTGGACTTTACTTGCTCCGTCCAATAAAAAATCAAACCGAGTACGAATGTAACACGTTACTACAAATCAGATATCCGGTACCATATTAGTTTTTTATTAAAAAAAAAAAA]
[+] EMBL BE040862 [AGGGACCCGCGCGGCGGCGCCGCCGCCGGCGACCGGGTGTTCGACGCCGTGGTGGTGGTGAAGGCCTGGCTCAAGTCCAAGGAGCTCGTCTCCTTCACGCCTGCTGCTTCTACCAAATAATCCGCTCAATTATATGTATTAGTTTCACTCTAATTAATTAATTATTACTAGTTGGACTTTACTTGCTCCGTCCAATAAAAAATCAAACCGAGTACGAATGTAACACGTTACTACAAATCAGATATCCGGTACCATATTAGTTTTTTATTAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11851#0 GCTGCAACAATGGCCACCTCTCCTATGCTCTTCCTTGTCTCCCTCCTACTAGTACTAGTC 60
consensus_11851#2 ------------------------------------------------------------
consensus_11851#1 ------------------------------------------------------------
consensus_11851#0 GCCGCCGCCACTGGCGACGAGGCATCGCCGTCGAACGCGGCGGCGCCGGCGGCCCGTGCT 120
consensus_11851#2 ------------------------------------------------------------
consensus_11851#1 ------------------------------------------------------------
consensus_11851#0 GGTCGGCGGGAGGACGGAGATCAGGGACGTGGGCAGCAACAAGGCGGTGCAGTCGCTGGG 180
consensus_11851#2 ------------------------------------------------------------
consensus_11851#1 ------------------------------------------------------------
consensus_11851#0 CCGCTTCGCCGTCGCCGAGCACAACGCCGCCTCCGCACGGCGGCTCCGGCGGCCCCGCGA 240
consensus_11851#2 ------------------------------------------------------------
consensus_11851#1 ------------------------------------------------------------
consensus_11851#0 ACCCCGTCCCGGTGAAGCTCGCGTTCGCACGCGTCGTGGAGGCGCAGAAGCAGGTCGTCT 300
consensus_11851#2 ------------------------------------------------------------
consensus_11851#1 -----GCTGCAACAATGGCCACCTCTCCCCTGCTCCTCCTCCTCCTCCTACTAGTCGCCG 55
consensus_11851#0 CCGGCGTGGCCTACTACCTCAAGGTCGCCGCGAGCGCGAGGGACCCCCGCGGCGGCGCCG 360
consensus_11851#2 --------------------------------------AGGGACCCGCGCGGCGGCGCCG 22
consensus_11851#1 CCGCCGCTGCTGCCGGCGACGAGGCATCGCTGTCGCCGTCGAACGCGGCTGGCGCCGGCG 115
* ** * **** ** **
consensus_11851#0 CCGCCGGCGGTGACCGGG-TGTTCGACGCCGTGGTGGTGGTGAAGGCCTGGCTCAAATCC 419
consensus_11851#2 CCGCCGGCG---ACCGGG-TGTTCGACGCCGTGGTGGTGGTGAAGGCCTGGCTCAAGTCC 78
consensus_11851#1 GCGCCGGCGGCGCCCGTGCTGGTCGGCGGGAGGACGGAGATCAGGGACGTGGGCGGCAAC 175
******** *** * ** *** ** * ** * * * ** * * * *
consensus_11851#0 AAGGAGCTCGTCTCCTTCACGCCTGCTTCTTCTACCAAATAATCATGCTCAAATATATGT 479
consensus_11851#2 AAGGAGCTCGTCTCCTTCACGCCTGCTGCTTCTACCAAATAATC-CGCTCAATTATATGT 137
consensus_11851#1 AAGGCGGTGCAGTCGCTGGGCCGCTTCGCCGTCGCCGAGCACAACCGCCGCCTTCGCCAT 235
**** * * ** * * * ** * * ** * *
consensus_11851#0 ATTAGTTTCACTCTAATTATATTAATTATTACTA-GTTGGACTTTACTCCCTCCGTCTAA 538
consensus_11851#2 ATTAGTTTCACTCTAATTA-ATTAATTATTACTA-GTTGGACTTTACTTGCTCCGTCCAA 195
consensus_11851#1 GGCTCCTGCGGGCCCGCCGACCCCGTCCCGGTGAAGATCGCGTTCGCACGCGCCGTGGAG 295
* * * * * * * * ** * * **** *
consensus_11851#0 -TAAAAAATCAACCCTAGTACGGATGTAATACATTATAGTACTACGAATCAGACATCCGG 597
consensus_11851#2 -TAAAAAATCAAACCGAGTACGAATGTAACACGTTA-----CTACAAATCAGATATCCGG 249
consensus_11851#1 GCGCAGAAGCAAAGTC-GTTCCTGCGTGGCCTACTACCT--CAAGGGCGTCGCGAGGGGA 352
* ** *** ** * ** ** * * * * *
consensus_11851#0 TACCATA---GTTTTTTATGGAACGGAGATATTAGTTTTTTATGGGACGGATGGAATATT 654
consensus_11851#2 TACCATATTAGTTTTTTATTAAAAAAAAAAAA---------------------------- 281
consensus_11851#1 CCCCGCGGGGGGGCCGCCCCCCGGGAACTGGTGTTTGACTCCCCGCGGGGGGTGAAGGAC 412
** * *
consensus_11851#0 ACGAAGCA---------------------------------------------------- 662
consensus_11851#2 ------------------------------------------------------------
consensus_11851#1 TTGTTCATAGTTCAAAGAGATCTTCTGCTTTCAAGCTCCTGGCTTTAACCAATAATACCC 472
consensus_11851#0 ---------------------------------------------------------
consensus_11851#2 ---------------------------------------------------------
consensus_11851#1 CCTACATATAGATTGTGGCTCCCCCCCACTAATTAATATTACTAGTGGGGCTTTCTT 529
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||