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Oryza sativa
cluster # 11887 cluster # 11887       Sequences # 9       consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11887#0 length = 1790 sequences # 7  
 consensus_11887#1 length = 593 sequences # 1  
consensus_11887#2 length = 422 sequences # 1  
consensusID : consensus_11887#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1790
fasta sequence 
                              [TTCCTCCTCCTCCTCTCTCTCTCTCTCCTCTGCTTCTCTCCCAAATTCGCCACCTCTCCTCCTCCTCTGATCCCTCCCCACGCCGCCGGCGAGGGCACGGCCACAACGGCCGCGGCGGCCTCCGTGCGCCGGAGACAACTAGACTACTACAACTACTACTACTACTACTACTACTCTTTCTCTCTCTTGTTGAGAGGAGCGGAGATCCATCCGTGCAGGCTCCGGGGGGTGGTTTCGTGTGGGATATGCCACACGTGCAGTCAGCTCCTGCGGCGGCGACCGCGGCGGGGATGTCCGCGGCGTCGGCGCCCGCGCCGAGGAGGTGGGAAGGGGTGGACCAGGCGCTGGAGCGGATGGTGCTCAGGGCGTGCCTCGACCAGGCGCCCGAGCGCCGCCGCGTCCGCGACGCGTTCAAGGACGTGCAGCTCAGCATCGACCACTGCCTCTTCAAGGGACAGTATAGCGATATTGGAACAAAGGAGTCATACGAGAAAAACTCCAGGGGCGTGGAGATTTTCTCAAAATGTTGGTATCCAGAGAATCATCGCATAAAAGCAATTGTTTGTCTCTGCCATGGTTATGGAGATACCTGTACCTTTTTTCTCGATGGTATTGCTAGGAAGATTGCTTCAGCTGGATATGGAGTGTTTGCATTAGATTACCCTGGTTTTGGTCTCTCGGAAGGACTTCATGGATTTATACCAAGTTTTGACACTCTTGTTGATGATGTAGCAGAACATTTTACTAAGGTCAAAGAAAATCCTGAACATAGAGGTCTTCCAAGCTTTCTGTTTGGTCAATCTATGGGTGGAGCAGTTGCATTGAAGATTCATTTTAAGCAACCAAATGAATGGGATGGTGCAATACTAGTTGCGCCCATGTGCAAGATTGCAGATGATGTGATTCCGCCTTGGCCTGTTCAGCAAGTTCTAATTTTTATGGCTAGACTTCTTCCAAAAGAGAAGCTTGTTCCACAAAAAGATTTAGCAGAGTTGGCTTTCAAAGAGAAGAAAAAACAGGAGCAGTGTTCTTATAATGTGATTGCGTACAAGGATAAACCACGTCTCCGAACAGCTTTGGAGATGCTGAGAACCACAAAGGAAATCGAGAGTCGTTTGGAGGAGGTTTCGCTGCCCATTATCATTTTGCATGGTGAGGGTGATTTGGTCACAGACCCAGCTGTGAGTAAAGCTCTCTATGATAAAGCGAAGAGCTCAGATAAGACGCTTCGCCTTTATAAAGATGCATATCACGCTATCTTGGAAGGTGAACCAGATGAGGCAATTTTTCAAGTCCTCGATGATATAATTTCTTGGCTGGATCAGCATTCTACAAAGAAAGTTCCATCGTCATAAACTGCAAAGGCAGCATTGGGAAAATTTCTTTGCTACTGATGTATCCTTCGTTGCCGTTGATCCAAGATTCCAACAGTTGCGA-TTCCATTTTGGCACCAGCCCTGTCATGTTTCTTTTCTGATTGCAAATGTGCCTGTTGCTCATCAAGCTGTGTACATA--------ATGTATATTATCCATCACAATTTGTTTCACAAAATTTAGGTAAGGTTTTGCATGCCATATATAAATTTGTAATATATTCAAATGTTTTTCTCGTTATGTAATATTTTTTAGATTTGATTGGCATATGTTTGGGTTAGATCAGAGTGGCATGCACTGAGCGCTAAGAAAACTAATTACTACTCCCTCTACATTTTAATGTATGACGCTATTGACTTTTTAACTAACGTTTGATTATTCGTCTTATTCAAAAAATTTATGTAATTATCATTTATTTTA]

[+] EMBL AK066939             [TTCCTCCTCCTCCTCTCTCTCTCTCTCCTCTGCTTCTCTCCCAAATTCGCCACCTCTCCTCCTCCTCTGATCCCTCCCCACGCCGCCGGCGAGGGCACGGCCACAACGGCCGCGGCGGCCTCCGTGCGCCGGAGACAACTAGACTACTACAACTACTACTACTACTACTACTACTCTTTCTCTCTCTTGTTGAGAGGAGCGGAGATCCATCCGTGCAGGCTCCGGGGGGTGGTTTCGTGTGGGATATGCCACACGTGCAGTCAGCTCCTGCGGCGGCGACCGCGGCGGGGATGTCCGCGGCGTCGGCGCCCGCGCCGAGGAGGTGGGAAGGGGTGGACCAGGCGCTGGAGCGGATGGTGCTCAGGGCGTGCCTCGACCAGGCGCCCGAGCGCCGCCGCGTCCGCGACGCGTTCAAGGACGTGCAGCTCAGCATCGACCACTGCCTCTTCAAGGGACAGTATAGCGATATTGGAACAAAGGAGTCATACGAGAAAAACTCCAGGGGCGTGGAGATTTTCTCAAAATGTTGGTATCCAGAGAATCATCGCATAAAAGCAATTGTTTGTCTCTGCCATGGTTATGGAGATACCTGTACCTTTTTTCTCGATGGTATTGCTAGGAAGATTGCTTCAGCTGGATATGGAGTGTTTGCATTAGATTACCCTGGTTTTGGTCTCTCGGAAGGACTTCATGGATTTATACCAAGTTTTGACACTCTTGTTGATGATGTAGCAGAACATTTTACTAAGGTCAAAGAAAATCCTGAACATAGAGGTCTTCCAAGCTTTCTGTTTGGTCAATCTATGGGTGGAGCAGTTGCATTGAAGATTCATTTTAAGCAACCAAATGAATGGGATGGTGCAATACTAGTTGCGCCCATGTGCAAGATTGCAGATGATGTGATTCCGCCTTGGCCTGTTCAGCAAGTTCTAATTTTTATGGCTAGACTTCTTCCAAAAGAGAAGCTTGTTCCACAAAAAGATTTAGCAGAGTTGGCTTTCAAAGAGAAGAAAAAACAGGAGCAGTGTTCTTATAATGTGATTGCGTACAAGGATAAACCACGTCTCCGAACAGCTTTGGAGATGCTGAGAACCACAAAGGAAATCGAGAGTCGTTTGGAGGAGGTTTCGCTGCCCATTATCATTTTGCATGGTGAGGGTGATTTGGTCACAGACCCAGCTGTGAGTAAAGCTCTCTATGATAAAGCGAAGAGCTCAGATAAGACGCTTCGCCTTTATAAAGATGCATATCACGCTATCTTGGAAGGTGAACCAGATGAGGCAATTTTTCAAGTCCTCGATGATATAATTTCTTGGCTGGATCAGCATTCTACAAAGAAAGTTCCATCGTCATAAACTGCAAAGGCAGCATTGGGAAAATTTCTTTGCTACTGATGTATCCTTCGTTGCCGTTGATCCAAGATTCCAACAGTTGCGA TTCCATTTTGGCACCAGCCCTGTCATGTTTCTTTTCTGATTGCAAATGTGCCTGTTGCTCATCAAGCTGTGTACATA        ATGTATATTATCCATCACAATTTGTTTCACAAAATTTAGGTAAGGTTTTGCATGCCATATATAAATTTGTAATATATTCAAATGTTTTTCTCGTTATGTAATATTTTTTAGATTTGATTGGCATATG                                                                                                                                                     ]
[+] EMBL AK098985             [TTCCTCCTCCTCCTCTCTCTCTCTCTCCTCTGCTTCTCTCCCAAATTCGCCACCTCTCCTCCTCCTCTGATCCCTCCCCACGCCGCCGGCGAGGGCACGGCCACAACGGCCGCGGCGGCCTCCGTGCGCCGGAGACAACTAGACTACTACAACTACTACTACTACTACTACTACTCTTTCTCTCTCTTGTTGAGAGGAGCGGAGATCCATCCGTGCAGGCTCCGGGGGGTGGTTTCGTGTGGGATATGCCACACGTGCAGTCAGCTCCTGCGGCGGCGACCGCGGCGGGGATGTCCGCGGCGTCGGCGCCCGCGCCGAGGAGGTGGGAAGGGGTGGACCAGGCGCTGGAGCGGATGGTGCTCAGGGCGTGCCTCGACCAGGCGCCCGAGCGCCGCCGCGTCCGCGACGCGTTCAAGGACGTGCAGCTCAGCATCGACCACTGCCTCTTCAAGGGACAGTATAGCGATATTGGAACAAAGGAGTCATACGAGAAAAACTCCAGGGGCGTGGAGATTTTCTCAAAATGTTGGTATCCAGAGAATCATCGCATAAAAGCAATTGTTTGTCTCTGCCATGGTTATGGAGATACCTGTACCTTTTTTCTCGATGGTATTGCTAGGAAGATTGCTTCAGCTGGATATGGAGTGTTTGCATTAGATTACCCTGGTTTTGGTCTCTCGGAAGGACTTCATGGATTTATACCAAGTTTTGACACTCTTGTTGATGATGTAGCAGAACATTTTACTAAGGTCAAAGAAAATCCTGAACATAGAGGTCTTCCAAGCTTTCTGTTTGGTCAATCTATGGGTGGAGCAGTTGCATTGAAGATTCATTTTAAGCAACCAAATGAATGGGATGGTGCAATACTAGTTGCGCCCATGTGCAAGATTGCAGATGATGTGATTCCGCCTTGGCCTGTTCAGCAAGTTCTAATTTTTATGGCTAGACTTCTTCCAAAAGAGAAGCTTGTTCCACAAAAAGATTTAGCAGAGTTGGCTTTCAAAGAGAAGAAAAAACAGGAGCAGTGTTCTTATAATGTGATTGCGTACAAGGATAAACCACGTCTCCGAACAGCTTTGGAGATGCTGAGAACCACAAAGGAAATCGAGAGTCGTTTGGAGGAGGTTTCGCTGCCCATTATCATTTTGCATGGTGAGGGTGATTTGGTCACAGACCCAGCTGTGAGTAAAGCTCTCTATGATAAAGCGAAGAGCTCAGATAAGACGCTTCGCCTTTATAAAGATGCATATCACGCTATCTTGGAAGGTGAACCAGATGAGGCAATTTTTCAAGTCCTCGATGATATAATTTCTTGGCTGGATCAGCATTCTACAAAGAAAGTTCCATCGTCATAAACTGCAAAGGCAGCATTGGGAAAATTTCTTTGCTACTGATGTATCCTTCGTTGCCGTTGATCCAAGATTCCAACAGTTGCGA TTCCATTTTGGCACCAGCCCTGTCATGTTTCTTTTCTGATTGCAAATGTGCCTGTTGCTCATCAAGCTGTGTACATA        ATGTATATTATCCATCACAATTTGTTTCACAAAATTTAGGTAAGGTTTTGCATGCCATATATAAATTTGTAATATATTCAAATGTTTTTCTCGTTATGTAATATTTTTTAGA                                                                                                                                                                    ]
[+] EMBL CB676691             [                                              TCGCCACCTCTCCTCCTCCTCTGATCCCTCCCCACGCCGCCGGCGAGGGCACGGCCACAACGGCCGCGGCGGCCTCCGTGCGCCGGAGACAACTAGACTACTACAACTACTACTACTACTACTACTACTCTTTCTCTCTCTTGTTGAGAGGAGCGGAGATCCATCCGTGCAGGCTCCGGGGGGTGGTTTCGTGTGGGATATGCCACACGTGCAGTCAGCTCCTGCGGCGGCGACCGCGGCGGGGATGTCCGCGGCGTCGGCGCCCGCGCCGAGGAGGTGGGAAGGGGTGGACCAGGCGCTGGAGCGGATGGTGCTCAGGGCGTGCCTCGACCAGGCGCCCGAGCGCCGCCGCGTCCGCGACGCGTTCAAGGACGTGCAGCTCAGCATCGACCACTGCCTCTTCAAGGGACAGTATAGCGATATTGGAACAAAGGAGTCATACGAGAAAAACTCCAGGGGCGTGGAGATTTTCTCAAAATGTTGGTATCCAGAGAATCATCGCATAAAAGCAATTGTTTGTCTCTGCCATGGTTATGGAGATACCTGTACCTTTTTTCTCGATGGTATTGCTAGGAAGATTGCTTCAGCTGGATATGGAGTGTTTGCATTAGATTACCCTGGTTTTGGTCTCTCGGAAGGACTTCATGGATTTATACCAAGTTTTGACACTCTTGTTGATGATGTAGCAGAACATTTTACTAAGGTCAAAGAAAATCCTGAACATAGAGGTCTTCCAAGCTTTCTGTTTGGTCAATCTATGGGTGGAGCAGTTGCATTGAAGATTCATTTTAAGCAACCCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CF324630             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GAAAATCCTGAACATAGAGGTCTTCCAAGCTTTCTGTTTGGTCAATCTATGGGTGGAGCAGTTGCATTGAAGATTCATTTTAAGCAACCAAATGAATGGGATGGTGCAATACTAGTTGCGCCCATGTGCAAGATTGCAGATGATGTGATTCCGCCTTGGCCTGTTCAGCAAGTTCTAATTTTTATGGCTAGACTTCTTCCAAAAGAGAAGCTTGTTCCACAAAAAGATTTAGCAGAGTTGGCTTTCAAAGAGAAGAAAAAACAGGAGCAGTGTTCTTATAATGTGATTGCGTACAAGGATAAACCACGTCTCCGAACAGCTTTGGAGATGCTGAGAACCACAAAGGAAATCGAGAGTCGTTTGGAGGAGGTTTCGCTGCCCATTATCATTTTGCATGGTGAGGGTGATTTGGTCACAGACCCAGCTGTGAGTAAAGCTCTCTATGATAAAGCGAAGAGCTCAGATAAGACGCTTCGCCTTTATAAAGATGCATATCACGCTATCTTGGAAGGTGAACCAGATGAGGCAATTTTTCAAGTCCTCGATGATATAATTTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CF304936             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GTGCAATACTAGTTGCGCCCATGTGCAAGATTGCAGATGATGTGATTCCGCCTTGGCCTGTTCAGCAAGTTCTAATTTTTATGGCTAGACTTCTTCCAAAAGAGAAGCTTGTTCCACAAAAAGATTTAGCAGAGTTGGCTTTCAAAGAGAAGAAAAAACAGGAGCAGTGTTCTTATAATGTGATTGCGTACAAGGATAAACCACGTCTCCGAACAGCTTTGGAGATGCTGAGAACCACAAAGGAAATCGAGAGTCGTTTGGAGGAGGTTTCGCTGCCCATTATCATTTTGCATGGTGAGGGTGATTTGGTCACAGACCCAGCTGTGAGTAAAGCTCTCTATGATAAAGCGAAGAGCTCAGATAAGACGCTTCGCCTTTATAAAGATGCATATCACGCTATCTTGGAAGGTGAACCAGATGAGGCAATTTTTCAAGTCCTCGATGATATAATTTCTTGGCTGGATCAGCATTCTACAAAGAAAGTTCCATCGTCATAAACTGCAAAGGCAGCATTGGGAAAATTTCTTTGCTACT                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BM929241             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TACAAGGATAAACCACGTCTCCGAACAGCTTTGGAGATGCTGAGAACCACAAAGGAAATCGAGAGTCGTTTGGAGGAGGTTTCGCTGCCCATTATCATTTTGCGTGGTGAGGGTGATTTGGTCACAGACCCAGCTGTGAGTAAAGCTCTCTATGATAAAGCGAAGAGCTCAGATAAGACGCTTCGCCTTTATAAAGATGCATATCACGCTATCTTGGAAGGTGAACCAGACGAGGCAATTTTTCAAGTCCTCGATGATATAATTTCTTGGCTGGATCAGCATTCTACAAAGAAAGTTCCATCGTCATAAACTGCAAAGGCAGCATTGAGAAAATTTC TTGCTACTGATGTATCCTTCGTTGCCGTTGATCCAAGATTCCAGCAGTTGCGACTTCCATTTTGGCACCAGCCCTGTCATGTTTCTTTGCTGATTGCAAATGTGCCTGTTGCTCATC                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CB096924             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CCTCGATGATATAATTTCTTGGCTGGATCNGCATTCTACAAAGAAAGTTCCATCGTCATAAACTGCAAAGGCAGCATTGAGAAAATTTC TTGCTACTGATGTATCCTTCGTTGCCGTTGATCCAAGATTCCAACAGTTGCGACTTCCATTTTGGCACCAGCCCTGTCATGTTTCTTTGCTGATTGCAAATGTGCCTGTTGCTCATCAAGCTATGTACATAACTGACCGATGTATATTACCCATCACAATTTGTTTCACAAAATTTAGATAAGGTTTTGCATGCTACATATAAATTTGTAATATATTCAAATGTTTTTCTCGTTATGTAATATTTTTTACATTTAATTGGCATGTGTTTGGGTTAGATCAGAGTGGCATGCACTGAGCGCTAAGAAAACTAATTACTACTCCCTCTACATTTTAATGTATGACGCTATTGACTTTTTAACTAACGTTTGATTATTCGTCTTATTCAAAAAATTTATGTAATTATCATTTATTTTA]




>consensus_11887#0
TTCCTCCTCCTCCTCTCTCTCTCTCTCCTCTGCTTCTCTCCCAAATTCGCCACCTCTCCT
CCTCCTCTGATCCCTCCCCACGCCGCCGGCGAGGGCACGGCCACAACGGCCGCGGCGGCC
TCCGTGCGCCGGAGACAACTAGACTACTACAACTACTACTACTACTACTACTACTCTTTC
TCTCTCTTGTTGAGAGGAGCGGAGATCCATCCGTGCAGGCTCCGGGGGGTGGTTTCGTGT
GGGATATGCCACACGTGCAGTCAGCTCCTGCGGCGGCGACCGCGGCGGGGATGTCCGCGG
CGTCGGCGCCCGCGCCGAGGAGGTGGGAAGGGGTGGACCAGGCGCTGGAGCGGATGGTGC
TCAGGGCGTGCCTCGACCAGGCGCCCGAGCGCCGCCGCGTCCGCGACGCGTTCAAGGACG
TGCAGCTCAGCATCGACCACTGCCTCTTCAAGGGACAGTATAGCGATATTGGAACAAAGG
AGTCATACGAGAAAAACTCCAGGGGCGTGGAGATTTTCTCAAAATGTTGGTATCCAGAGA
ATCATCGCATAAAAGCAATTGTTTGTCTCTGCCATGGTTATGGAGATACCTGTACCTTTT
TTCTCGATGGTATTGCTAGGAAGATTGCTTCAGCTGGATATGGAGTGTTTGCATTAGATT
ACCCTGGTTTTGGTCTCTCGGAAGGACTTCATGGATTTATACCAAGTTTTGACACTCTTG
TTGATGATGTAGCAGAACATTTTACTAAGGTCAAAGAAAATCCTGAACATAGAGGTCTTC
CAAGCTTTCTGTTTGGTCAATCTATGGGTGGAGCAGTTGCATTGAAGATTCATTTTAAGC
AACCAAATGAATGGGATGGTGCAATACTAGTTGCGCCCATGTGCAAGATTGCAGATGATG
TGATTCCGCCTTGGCCTGTTCAGCAAGTTCTAATTTTTATGGCTAGACTTCTTCCAAAAG
AGAAGCTTGTTCCACAAAAAGATTTAGCAGAGTTGGCTTTCAAAGAGAAGAAAAAACAGG
AGCAGTGTTCTTATAATGTGATTGCGTACAAGGATAAACCACGTCTCCGAACAGCTTTGG
AGATGCTGAGAACCACAAAGGAAATCGAGAGTCGTTTGGAGGAGGTTTCGCTGCCCATTA
TCATTTTGCATGGTGAGGGTGATTTGGTCACAGACCCAGCTGTGAGTAAAGCTCTCTATG
ATAAAGCGAAGAGCTCAGATAAGACGCTTCGCCTTTATAAAGATGCATATCACGCTATCT
TGGAAGGTGAACCAGATGAGGCAATTTTTCAAGTCCTCGATGATATAATTTCTTGGCTGG
ATCAGCATTCTACAAAGAAAGTTCCATCGTCATAAACTGCAAAGGCAGCATTGGGAAAAT
TTCTTTGCTACTGATGTATCCTTCGTTGCCGTTGATCCAAGATTCCAACAGTTGCGATTC
CATTTTGGCACCAGCCCTGTCATGTTTCTTTTCTGATTGCAAATGTGCCTGTTGCTCATC
AAGCTGTGTACATAATGTATATTATCCATCACAATTTGTTTCACAAAATTTAGGTAAGGT
TTTGCATGCCATATATAAATTTGTAATATATTCAAATGTTTTTCTCGTTATGTAATATTT
TTTAGATTTGATTGGCATATGTTTGGGTTAGATCAGAGTGGCATGCACTGAGCGCTAAGA
AAACTAATTACTACTCCCTCTACATTTTAATGTATGACGCTATTGACTTTTTAACTAACG
TTTGATTATTCGTCTTATTCAAAAAATTTATGTAATTATCATTTATTTTA

consensusID : consensus_11887#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 593
fasta sequence 
                              [ATACCTTGGTTTTTTGTCCATTTTTATAGGCGCCATTTTCTTGGAGGCATTGATAGGAAGATTGCTTCAGCTGGATGTGGAGTGTTTGCATTATATTACCCTGGTTTTGGTCTCTCGGAAGGACTTCATGGATTTATACCAAGTTTTGACACTCTTGTTGATGATGTATCAGAACATTTTACTAATGTCTTAGAAAATCCTGAATATATAGGTCTTCCCAGCTTTCTGGTTGGTCAATCTATGGCTGGAGGAGATGCATTGAAGATTCATTTTAAGGAACCACATGAATGCGATGGCGCCATACTAGTTGCGCCCATGTGCAAGATTGCAGACGATGTGATTCCCCCTTGGGCTGGTCAGGAAGCTCGAATTTTTATGGTTAGACTTCTTGCAAAAAAAACCTTGTTCCCCGAAAAGATTTATCAGAGATGGCTTCTCAACAAAAGAAATACGGGAGGAGGGTCTTATAAGGGGATGGGTGAAAGGATAAAGCAAGTCTCCTAACAGGTTTGGAGAGGGTGGAAACCCCAAGGGAATCCAGAAGCCTTTGGAGGAGGTTACCCGCCCATAATCATTTTCATGGGAGGGTTGTT]

[+] EMBL CA754176             [ATACCTTGGTTTTTTGTCCATTTTTATAGGCGCCATTTTCTTGGAGGCATTGATAGGAAGATTGCTTCAGCTGGATGTGGAGTGTTTGCATTATATTACCCTGGTTTTGGTCTCTCGGAAGGACTTCATGGATTTATACCAAGTTTTGACACTCTTGTTGATGATGTATCAGAACATTTTACTAATGTCTTAGAAAATCCTGAATATATAGGTCTTCCCAGCTTTCTGGTTGGTCAATCTATGGCTGGAGGAGATGCATTGAAGATTCATTTTAAGGAACCACATGAATGCGATGGCGCCATACTAGTTGCGCCCATGTGCAAGATTGCAGACGATGTGATTCCCCCTTGGGCTGGTCAGGAAGCTCGAATTTTTATGGTTAGACTTCTTGCAAAAAAAACCTTGTTCCCCGAAAAGATTTATCAGAGATGGCTTCTCAACAAAAGAAATACGGGAGGAGGGTCTTATAAGGGGATGGGTGAAAGGATAAAGCAAGTCTCCTAACAGGTTTGGAGAGGGTGGAAACCCCAAGGGAATCCAGAAGCCTTTGGAGGAGGTTACCCGCCCATAATCATTTTCATGGGAGGGTTGTT]




>consensus_11887#1
ATACCTTGGTTTTTTGTCCATTTTTATAGGCGCCATTTTCTTGGAGGCATTGATAGGAAG
ATTGCTTCAGCTGGATGTGGAGTGTTTGCATTATATTACCCTGGTTTTGGTCTCTCGGAA
GGACTTCATGGATTTATACCAAGTTTTGACACTCTTGTTGATGATGTATCAGAACATTTT
ACTAATGTCTTAGAAAATCCTGAATATATAGGTCTTCCCAGCTTTCTGGTTGGTCAATCT
ATGGCTGGAGGAGATGCATTGAAGATTCATTTTAAGGAACCACATGAATGCGATGGCGCC
ATACTAGTTGCGCCCATGTGCAAGATTGCAGACGATGTGATTCCCCCTTGGGCTGGTCAG
GAAGCTCGAATTTTTATGGTTAGACTTCTTGCAAAAAAAACCTTGTTCCCCGAAAAGATT
TATCAGAGATGGCTTCTCAACAAAAGAAATACGGGAGGAGGGTCTTATAAGGGGATGGGT
GAAAGGATAAAGCAAGTCTCCTAACAGGTTTGGAGAGGGTGGAAACCCCAAGGGAATCCA
GAAGCCTTTGGAGGAGGTTACCCGCCCATAATCATTTTCATGGGAGGGTTGTT

consensusID : consensus_11887#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 422
fasta sequence 
                              [GCTAGCATTTGCTGACCAGAAAGAAAAGGTGTGCCAATGCGGTGCTATGAAACCTGGCAAAAGGGCAAGCATTTGGAGGAAAATGTGTGCGTGTGGCTGACCTGGATGGTGATGCCCTGTGCGGTTGCGCCGTGTGGATGCCAAAGGATTGCCAACAGTGTGCGACTGTGCCACTGTGTTGGGCACCCAGCCCTGGTGCATGGTGTGTGCTGTTGGCTGGATTGGCAAATGGTGGCCTGGTGTGGCTGCATGCAAGCTAATGGTGACCATGAACTGGACCCCGATGGTGATGATTAATGCCATGCACCAATGTTGGTGTTGCACAAATGTTGAGATAAGGTTTTGCATGCTACATATAAATTNGTAATATATTCAAATGTTTTTCTCGTTATGTAATATTTTTACATTTAATGGCCAAAAAA]

[+] EMBL BQ905927             [GCTAGCATTTGCTGACCAGAAAGAAAAGGTGTGCCAATGCGGTGCTATGAAACCTGGCAAAAGGGCAAGCATTTGGAGGAAAATGTGTGCGTGTGGCTGACCTGGATGGTGATGCCCTGTGCGGTTGCGCCGTGTGGATGCCAAAGGATTGCCAACAGTGTGCGACTGTGCCACTGTGTTGGGCACCCAGCCCTGGTGCATGGTGTGTGCTGTTGGCTGGATTGGCAAATGGTGGCCTGGTGTGGCTGCATGCAAGCTAATGGTGACCATGAACTGGACCCCGATGGTGATGATTAATGCCATGCACCAATGTTGGTGTTGCACAAATGTTGAGATAAGGTTTTGCATGCTACATATAAATTNGTAATATATTCAAATGTTTTTCTCGTTATGTAATATTTTTACATTTAATGGCCAAAAAA]




>consensus_11887#2
GCTAGCATTTGCTGACCAGAAAGAAAAGGTGTGCCAATGCGGTGCTATGAAACCTGGCAA
AAGGGCAAGCATTTGGAGGAAAATGTGTGCGTGTGGCTGACCTGGATGGTGATGCCCTGT
GCGGTTGCGCCGTGTGGATGCCAAAGGATTGCCAACAGTGTGCGACTGTGCCACTGTGTT
GGGCACCCAGCCCTGGTGCATGGTGTGTGCTGTTGGCTGGATTGGCAAATGGTGGCCTGG
TGTGGCTGCATGCAAGCTAATGGTGACCATGAACTGGACCCCGATGGTGATGATTAATGC
CATGCACCAATGTTGGTGTTGCACAAATGTTGAGATAAGGTTTTGCATGCTACATATAAA
TTNGTAATATATTCAAATGTTTTTCTCGTTATGTAATATTTTTACATTTAATGGCCAAAA
AA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11887#0      TTCCTCCTCCTCCTCTCTCTCTCTCTCCTCTGCTTCTCTCCCAAATTCGCCACCTCTCCT 60
consensus_11887#1      ------------------------------------------------------------
consensus_11887#2      ------------------------------------------------------------
                                                                                   

consensus_11887#0      CCTCCTCTGATCCCTCCCCACGCCGCCGGCGAGGGCACGGCCACAACGGCCGCGGCGGCC 120
consensus_11887#1      ------------------------------------------------------------
consensus_11887#2      ------------------------------------------------------------
                                                                                   

consensus_11887#0      TCCGTGCGCCGGAGACAACTAGACTACTACAACTACTACTACTACTACTACTACTCTTTC 180
consensus_11887#1      ------------------------------------------------------------
consensus_11887#2      ------------------------------------------------------------
                                                                                   

consensus_11887#0      TCTCTCTTGTTGAGAGGAGCGGAGATCCATCCGTGCAGGCTCCGGGGGGTGGTTTCGTGT 240
consensus_11887#1      ------------------------------------------------------------
consensus_11887#2      ------------------------------------------------------------
                                                                                   

consensus_11887#0      GGGATATGCCACACGTGCAGTCAGCTCCTGCGGCGGCGACCGCGGCGGGGATGTCCGCGG 300
consensus_11887#1      ------------------------------------------------------------
consensus_11887#2      ------------------------------------------------------------
                                                                                   

consensus_11887#0      CGTCGGCGCCCGCGCCGAGGAGGTGGGAAGGGGTGGACCAGGCGCTGGAGCGGATGGTGC 360
consensus_11887#1      ------------------------------------------------------------
consensus_11887#2      ------------------------------------------------------------
                                                                                   

consensus_11887#0      TCAGGGCGTGCCTCGACCAGGCGCCCGAGCGCCGCCGCGTCCGCGACGCGTTCAAGGACG 420
consensus_11887#1      ------------------------------------------------------------
consensus_11887#2      ------------------------------------------------------------
                                                                                   

consensus_11887#0      TGCAGCTCAGCATCGACCACTGCCTCTTCAAGGGACAGTATAGCGATATTGGAACAAAGG 480
consensus_11887#1      ------------------------------------------------------------
consensus_11887#2      ------------------------------------------------------------
                                                                                   

consensus_11887#0      AGTCATACGAGAAAAACTCCAGGGGCGTGGAGATTTTCTCAAAATGTTGGTATCCAGAGA 540
consensus_11887#1      ------------------------------------------------------------
consensus_11887#2      ------------------------------------------------------------
                                                                                   

consensus_11887#0      ATCATCGCATAAAAGCAATTGTTTGTCTCTGCCATGGTTATGGAGATACCTGTACCTTTT 600
consensus_11887#1      ----------------ATACCTTGGTTTTTTGTCCATTTTTATAGGCGCCA-------TT 37
consensus_11887#2      --------------------GCTAGCATTTGC--TGACCAGAAAGAAAAGGTGTGCCAAT 38
                                             * *  * *             **              *

consensus_11887#0      TTCTCGATGGTATTGCTAGGAAGATTGCTTCAGCTGGATATGGAGTGTTTGCATTAGATT 660
consensus_11887#1      TTCTTGGAGGCATTGATAGGAAGATTGCTTCAGCTGGATGTGGAGTGTTTGCATTATATT 97
consensus_11887#2      GCGGTGCTATGAAACCTGGCAAAAGGGCAAGCATTTGGAGGAAAATGTGTGCGTGTGGCT 98
                            *     *    * * ** *  **      * *      * *** *** *     *

consensus_11887#0      ACCCTGGTTT-TGGTCTCTCGGAAGGACTTCATGGATTTATACCAAGTTTTGACACTCTT 719
consensus_11887#1      ACCCTGGTTT-TGGTCTCTCGGAAGGACTTCATGGATTTATACCAAGTTTTGACACTCTT 156
consensus_11887#2      GACCTGGATGGTGATGCCCTGTGCGGTTGCGCCGTGTGGATGCCAA--------AGGATT 150
                         ***** *  ** *  *  *   **       *  *  ** ****        *   **

consensus_11887#0      GTTGATGATGTAGCAGAACATTTTACTAAGGTCAAAGAAAATCCTGAACATAGAGGTCTT 779
consensus_11887#1      GTTGATGATGTATCAGAACATTTTACTAATGTCTTAGAAAATCCTGAATATATAGGTCTT 216
consensus_11887#2      GCCAACAGTGTGC--GACTGTGCCACTGTGTTGGGCACCCAGCCCTGGTGCATGGTGTGT 208
                       *   *   ***    **   *   ***    *        * **       *  *    *

consensus_11887#0      CCAAGCTTTCTGTTTGGTCAATCTATGGGTGGAGCAGTTGCATTGAAGATTCATTTTAAG 839
consensus_11887#1      CCCAGCTTTCTGGTTGGTCAATCTATGGCTGGAGGAGATGCATTGAAGATTCATTTTAAG 276
consensus_11887#2      GCTGTTGGCTGGATTGGCAAATGGTGGCCTGGTGTGGCTGCAT-GCAAGCTAATGGTGAC 267
                        *         * ****  ***    *  *** *  * ***** * *   * **  * * 

consensus_11887#0      CAACCAAATGAATGGGATGGTGCAATACTAGT----TGCGCCCATGTGCAAGAT-TGCAG 894
consensus_11887#1      GAACCACATGAATGCGATGGCGCCATACTAGT----TGCGCCCATGTGCAAGAT-TGCAG 331
consensus_11887#2      CATGAACTGGACCCCGATGGTG-ATGATTAATGCCATGCACCAATGTTGGTGTTGCACAA 326
                        *   *   **    ***** *    * ** *    *** ** ****    * *   ** 

consensus_11887#0      ATGATGTGATTCCGCCTTGGCCTGTTCAGCAAGTTCTAATTTTTATGGCTAGACTTCTTC 954
consensus_11887#1      ACGATGTGATTCCCCCTTGGGCTGGTCAGGAAGCTCGAATTTTTATGGTTAGACTTCTTG 391
consensus_11887#2      ATGTTGAGATAAGGTTTTGCATGCTACATATAAATTNGTAATATATTCAAATGTTTTTCT 386
                       * * ** ***      ***       **   *  *      * ***    *   ** *  

consensus_11887#0      CAAAAGAGAAGCTTGTTCCACAAAAAGATTTAGCAGAGTTGGCTTTCAAAGAGAAGAAAA 1014
consensus_11887#1      CAAAA-AAAACCTTGTTCCCCGAAAAGATTTATCAGAGATGGCTTCTCAACAAAAGAAAT 450
consensus_11887#2      CGTTATGTAATATTTTTACATTTAATGGCCAAAAAA------------------------ 422
                       *   *   **  ** ** *    ** *    *  *                         

consensus_11887#0      AACAGGAGCAGTGTTCTTATAATGTGATTGCGTACAAGGATAAACCACGTCTCCGAACAG 1074
consensus_11887#1      A-CGGGAGGAGGGT-CTTATAAGGGGATGG-GTGAAAGGATAAAGCAAGTCTCCTAACAG 507
consensus_11887#2      ------------------------------------------------------------
                                                                                   

consensus_11887#0      CTTTGGAGATGCTGAGAACCACAAAGGAAATCGAGAGTCGTTTGGAGGAGGTTTCGCTGC 1134
consensus_11887#1      GTTTGGAGAGGGTGGAAACCCCAA-GGGAATCCAGAAGCCTTTGGAGGAGGTTAC-CCGC 565
consensus_11887#2      ------------------------------------------------------------
                                                                                   

consensus_11887#0      CCATTATCATTTTGCATGGTGAGGGTGATTTGGTCACAGACCCAGCTGTGAGTAAAGCTC 1194
consensus_11887#1      CCATAATCATTTT-CATGG-GAGGGTTGTT------------------------------ 593
consensus_11887#2      ------------------------------------------------------------
                                                                                   

consensus_11887#0      TCTATGATAAAGCGAAGAGCTCAGATAAGACGCTTCGCCTTTATAAAGATGCATATCACG 1254
consensus_11887#1      ------------------------------------------------------------
consensus_11887#2      ------------------------------------------------------------
                                                                                   

consensus_11887#0      CTATCTTGGAAGGTGAACCAGATGAGGCAATTTTTCAAGTCCTCGATGATATAATTTCTT 1314
consensus_11887#1      ------------------------------------------------------------
consensus_11887#2      ------------------------------------------------------------
                                                                                   

consensus_11887#0      GGCTGGATCAGCATTCTACAAAGAAAGTTCCATCGTCATAAACTGCAAAGGCAGCATTGG 1374
consensus_11887#1      ------------------------------------------------------------
consensus_11887#2      ------------------------------------------------------------
                                                                                   

consensus_11887#0      GAAAATTTCTTTGCTACTGATGTATCCTTCGTTGCCGTTGATCCAAGATTCCAACAGTTG 1434
consensus_11887#1      ------------------------------------------------------------
consensus_11887#2      ------------------------------------------------------------
                                                                                   

consensus_11887#0      CGATTCCATTTTGGCACCAGCCCTGTCATGTTTCTTTTCTGATTGCAAATGTGCCTGTTG 1494
consensus_11887#1      ------------------------------------------------------------
consensus_11887#2      ------------------------------------------------------------
                                                                                   

consensus_11887#0      CTCATCAAGCTGTGTACATAATGTATATTATCCATCACAATTTGTTTCACAAAATTTAGG 1554
consensus_11887#1      ------------------------------------------------------------
consensus_11887#2      ------------------------------------------------------------
                                                                                   

consensus_11887#0      TAAGGTTTTGCATGCCATATATAAATTTGTAATATATTCAAATGTTTTTCTCGTTATGTA 1614
consensus_11887#1      ------------------------------------------------------------
consensus_11887#2      ------------------------------------------------------------
                                                                                   

consensus_11887#0      ATATTTTTTAGATTTGATTGGCATATGTTTGGGTTAGATCAGAGTGGCATGCACTGAGCG 1674
consensus_11887#1      ------------------------------------------------------------
consensus_11887#2      ------------------------------------------------------------
                                                                                   

consensus_11887#0      CTAAGAAAACTAATTACTACTCCCTCTACATTTTAATGTATGACGCTATTGACTTTTTAA 1734
consensus_11887#1      ------------------------------------------------------------
consensus_11887#2      ------------------------------------------------------------
                                                                                   

consensus_11887#0      CTAACGTTTGATTATTCGTCTTATTCAAAAAATTTATGTAATTATCATTTATTTTA 1790
consensus_11887#1      --------------------------------------------------------
consensus_11887#2      --------------------------------------------------------


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)