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Oryza sativa
cluster # 11936 cluster # 11936       Sequences # 9       consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11936#0 length = 2094 sequences # 7  
 consensus_11936#1 length = 758 sequences # 1  
consensus_11936#2 length = 647 sequences # 1  
consensusID : consensus_11936#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 2094
fasta sequence 
                              [AGACTCCTCGCCTCTGCTCCGCTGCTGCTTCCCTGTTCACCCGCCATTAGCGCGACCGAGCTCGCTCGCTCCCGGTGCAAGTTGCACCGCCTACCGGCGGCGGCCATGGAGGACGGTGC-GGCGGCGC-GGGAGGCGGAGAGGTGGGAGGGGTACGTCGACTGGAGGAACCGGCCGGCGGTGCGCGGCCGGCACGGCGGCATGCTCGCCGCCTCCTTCGTTCTTGTGGTGGAGGTGCTCGAGAACCTGGCGTTCCTGGCGAACGCGAGCAACCTGGTGACCTACCTGATGAATTTCATGCACTACTCGCCGTCGCAGTCGGCGACGACGGTGACCAACTTCATGGGCACCGCCTTCCTCCTCGCCCTCCTTGGCGGCTTCCTCTCCGACGCCTTCTTCACCACCTACGCCATCTACCTCATCAGCGCCTTTGTGGAATTCCTGGGGCTGGTGGTCCTGACGATCCAGGCGAGGACGCCGTCGCTGATGCCGCCGGGGTGCGCCAAGGTTGCCGGCGCGGCGTGCGAGCCAGTGTCGGGGCCGAAGAAGGCAATGCTGTTCGCGGGGCTGTACGTGACGGCGCTGGGCATCGGCGGCATCAAGGGCTCCCTCCCGTCGCACGGCGCCGAGCAGTTCGACGAGCACGCGCCGCGGGGGCGGAAGGGGCGCTCCACCTTCTTCAACTACTTCGTCTTCTGCCTCTCCGTCGGCGCGCTCATCGCCGTCACGTTCGCCGTCTGGGTGGAGGACAACAAGGGGTGGCAGTGGGGGTTCGGCATCTCCACCATCGCCATCCTGCTCTCCATCCCGGTGTTCGTCGCCGGCTCGAGGCTGTACCGCAACAAGGTGCCCACGGGGAGCCCGCTCACCACCATCGCCAAGGTCGTCCTCGCCGCCGCGCTCGCTCGCCGCGGCGGCGCGCAGAGCGCCAGCAACGGCGCTGTCATCGACCGCGCGCCCAGCCCCACGGGGAGCACGGACATGAAGGAGTACTGCAAGCCCGGCGACATCTGCGGCGTCGCCGACGGCGCCGCCGAGGTGGCTACCGAGCCGTCGCAGGAGCTGGTGTTCCTGAACCGGGCGGTGCAGCGGCAGCCGCGGTGCGGGGCGCTGTCGTGCACGGTGCAGGAGGTGGAGGACGTCAAGATCGTGCTCATGGTGCTCCCGATCTTCTTCTCCACCATCATGCTCAACAGCTGCCTGGCGCAGCTGTCCACCTTCTCCGTGGAGCAGGCGGCGACGATGGACACCCGCGTCGGGGGGCTCAAGGTGCCGCCGGCGTCGCTGCCGGTGTTCCCGGTCACCTTCATCATCCTCCTCGCCCCGGTCTACGACCACATCATCATCCCGTTCGCGCGACGCGCCACGGGCACGGAGATGGGGATCACCCACCTGCAGCGCATCGGCACGGGGCTCGTCCTCTCCATCGTCGCCATGGCCGTCGCCGCCGTGGTGGAGGTGAAGCGCAAGAACGTGGCGTCCAACGCCGGAATGCTCGACGCGGCGGCGCCGCTGCCCATCACCTTCTTCTGGATCGCGTTCCAGTACCTGTTCCTGGGGTCCGCCGACCTGTTCACGCTGGCGGGGCTGCTCGAGTTCTTCTTCAGCGAGGCGCCGGCGAGGATGCGGTCGCTGGCGACGTCGCTGTCGTGGGCGTCGCTGGCGCTGGGGTACTACCTGAGCTCGGTGCTGGTGACGGTGGTGAACAGCGCGACGGGGCGCGGCGGGCGGCGGGCGTGGCTGCAGGGGGAGAACCTGAACCACTACCACCTGGAGAGGTTCTACTGGGTGATGTGTGTGCTCAGCACGCTCAACTACCTCTTCTTCTTGTTCTGGGCCATCCGGTACAAGTACAGAAACGCCGGGGTCATCAAGGGATGATGATCAATCTGTAATGCAGGGTTAACTGTTTAATTATCTGGCAAGGTAAAAAAAGGAGGGAGGTTAATTTGGTGGTCTTGAGGATGCTCATTGCTGTGTGGAATTGGTTGGCTGGCTGTGGCCGATGAATGAAAAGAAGCAGCGATTAAGCAAGTTGTTCATAAATAGATCGGTGTTCAATGAAGGAAAAGAAAAATAGTGAAGATAATGCAAAAA]

[+] EMBL AK071803             [AGACTCCTCGCCTCTGCTCCGCTGCTGCTTCCCTGTTCACCCGCCATTAGCGCGACCGAGCTCGCTCGCTCCCGGTGCAAGTTGCACCGCCTACCGGCGGCGGCCATGGAGGACGGTGC GGCGGCGC GGGAGGCGGAGAGGTGGGAGGGGTACGTCGACTGGAGGAACCGGCCGGCGGTGCGCGGCCGGCACGGCGGCATGCTCGCCGCCTCCTTCGTTCTTGTGGTGGAGGTGCTCGAGAACCTGGCGTTCCTGGCGAACGCGAGCAACCTGGTGACCTACCTGATGAATTTCATGCACTACTCGCCGTCGCAGTCGGCGACGACGGTGACCAACTTCATGGGCACCGCCTTCCTCCTCGCCCTCCTTGGCGGCTTCCTCTCCGACGCCTTCTTCACCACCTACGCCATCTACCTCATCAGCGCCTTTGTGGAATTCCTGGGGCTGGTGGTCCTGACGATCCAGGCGAGGACGCCGTCGCTGATGCCGCCGGGGTGCGCCAAGGTTGCCGGCGCGGCGTGCGAGCCAGTGTCGGGGCCGAAGAAGGCAATGCTGTTCGCGGGGCTGTACGTGACGGCGCTGGTCATCGGCGGCATCAAGGGCTCCCTCCCGTCGCACGGCGCCGAGCAGTTCGACGAGCACGCGCCGCGGGGGCGGAAGGGGCGCTCCACCTTCTTCAACTACTTCGTCTTCTGCCTCTCCGTCGGCGCGCTCATCGCCGTCACGTTCGCCGTCTGGGTGGAGGACAACAAGGGGTGGCAGTGGGGGTTCGGCATCTCCACCATCGCCATCCTGCTCTCCATCCCGGTGTTCGTCGCCGGCTCGAGGCTGTACCGCAACAAGGTGCCCACGGGGAGCCCGCTCACCACCATCGCCAAGGTCGTCCTCGCCGCCGCGCTCGCTCGCCGCGGCGGCGCGCAGAGCGCCAGCAACGGCGCTGTCATCGACCGCGCGCCCAGCCCCACGGGGAGCACGGACATGAAGGAGTACTGCAAGCCCGGCGACATCTGCGGCGTCGCCGACGGCGCCGCCGAGGTGGCTACCGAGCCGTCGCAGGAGCTGGTGTTCCTGAACCGGGCGGTGCAGCGGCAGCCGCGGTGCGGGGCGCTGTCGTGCACGGTGCAGGAGGTGGAGGACGTCAAGATCGTGCTCATGGTGCTCCCGATCTTCTTCTCCACCATCATGCTCAACAGCTGCCTGGCGCAGCTGTCCACCTTCTCCGTGGAGCAGGCGGCGACGATGGACACCCGCGTCGGGGGGCTCAAGGTGCCGCCGGCGTCGCTGCCGGTGTTCCCGGTCACCTTCATCATCCTCCTCGCCCCGGTCTACGACCACATCATCATCCCGTTCGCGCGACGCGCCACGGGCACGGAGATGGGGATCACCCACCTGCAGCGCATCGGCACGGGGCTCGTCCTCTCCATCGTCGCCATGGCCGTCGCCGCCGTGGTGGAGGTGAAGCGCAAGAACGTGGCGTCCAACGCCGGAATGCTCGACGCGGCGGCGCCGCTGCCCATCACCTTCTTCTGGATCGCGTTCCAGTACCTGTTCCTGGGGTCCGCCGACCTGTTCACGCTGGCGGGGCTGCTCGAGTTCTTCTTCAGCGAGGCGCCGGCGAGGATGCGGTCGCTGGCGACGTCGCTGTCGTGGGCGTCGCTGGCGCTGGGGTACTACCTGAGCTCGGTGCTGGTGACGGTGGTGAACAGCGCGACGGGGCGCGGCGGGCGGCGGGCGTGGCTGCAGGGGGAGAACCTGAACCACTACCACCTGGAGAGGTTCTACTGGGTGATGTGTGTGCTCAGCACGCTCAACTACCTCTTCTTCTTGTTCTGGGCCATCCGGTACAAGTACAGAAACGCCGGGGTCATCAAGGGATGATGATCAATCTGTAATGCAGGGTTAACTGTTTAATTATCTGGCAAGGTAAAAAAAGGAGGGAGGTTAATTTGGTGGTCTTGAGGATGCTCATTGCTGTGTGGAATTGGTTGGCTGGCTGTGGCCGATGAATGAAAAGAAGCAGCGATTAAG                                                                  ]
[+] EMBL CB642399             [       TCGCCTCTGCTCCGCTGCTGCTTCCCTGTTCACCCGCCATTAGCGCGACCGAGCTCGCTCGCTCCCGGTGCAAGTTGCACCGCCTACCGGCGGCGGCCATGGAGGACGGTGC GGCGGCGC GGGAGGCGGAGAGGTGGGAGGGGTACGTCGACTGGAGGAACCGGCCGGCGGTGCGCGGCCGGCACGGCGGCATGCTCGCCGCCTCCTTCGTTCTTGTGGTGGAGGTGCTCGAGAACCTGGCGTTCCTGGCGAACGCGAGCAACCTGGTGACCTACCTGATGAATTTCATGCACTACTCGCCGTCGCAGTCGGCGACGACGGTGACCAACTTCATGGGCACCGCCTTCCTCCTCGCCCTCCTTGGCGGCTTCCTCTCCGACGCCTTCTTCACCACCTACGCCATCTACCTCATCAGCGCCTTTGTGGAATTCCTGGGGCTGGTGGTCCTGACGATCCAGGCGAGGACGCCGTCGCTGATGCCGCCGGGGTGCGCCAAGGTTGCCGGCGCGGCGTGCGAGCCAGTGTCGGGGCCGAAGAAGGCAATGCTGTTCGCGGGGCTGTACGTGACGGCGCTGGGCATCGGCGGCATCAAGGGCTCCCTCCCGTCGCACGGCGCCGAGCAGTTCGACGAGCACGCGCCGCGGGGGCGGAAGGGGCGCTCCACCTTCTTCAACTACTTCGTCTTCTGCCTCTCCGTCGGCGCGCTCATCGCCGTCACGTTCGCCGTCTGGGTGGAGGACAACAAGGGGTGGCAGTGGGGGGTCGGCATCTCCACCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AU222697             [         GCCTCTGCTCCGCTGCTGCTTCCCTGTTCACCCGCCATTAGCGCGACCGAGCTCGCTCGCTCCCGGTGCAAGTTGCACCGCCTACCGGCGGCGGCCATGGAGGACGGTGCNGGCGGCGCNGGGAGGCGGAGAGGTGGGAGGGGTACGTCGACTGGAGGAACCGGCCGGCGGTGCGCGGCCGGCACGGCGGCATGCTCGCCGCCTCCTTCGTTCTTGTGGTGGAGGTGCTCGAGAACCTGGCGTTCCTGGCGAACGCGAGCAACCTGGTGACCTACCTGATGAATTTCATGCACTACTCGCCGTCGCAGTCGGCGACGACGGTGACCAACTTCATGGGCACCGCCTTCCTCCTCGCCCTCCTTGGCGGCTTCCTCTCCGACGCCTTCTTCACCACCTACGCCATCTACCTCATCAGCGCCTTTGTGGAATTCCTGGGGCTGGTGGTCCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CB639377             [               GCTCCGCTGCTGCTTCCCTGTTCACCCGCCATTAGCGCGACCGAGCTCGCTCGCTCCCGGTGCAAGTTGCACCGCCTACCGGCGGCGGCCATGGAGGACGGTGC GGCGGCGC GGGAGGCGGAGAGGTGGGAGGGGTACGTCGACTGGAGGAACCGGCCGGCGGTGCGCGGCCGGCACGGCGGCATGCTCGCCGCCTCCTTCGTTCTTGTGGTGGAGGTGCTCGAGAACCTGGCGTTCCTGGCGAACGCGAGCAACCTGGTGACCTACCTGATGAATTTCATGCACTACTCGCCGTCGCAGTCGGCGACGACGGTGACCAACTTCATGGGCACCGCCTTCCTCCTCGCCCTCCTTGGCGGCTTCCTCTCCGACGCCTTCTTCACCACCTACGCCATCTACCTCATCAGCGCCTTTGTGGAATTCCTGGGGCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CB658312             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GCGCCAAGGTTGCCGGCGCGGCGTGCGAGCCAGTGTCGGGGCCGAAGAAGGCAATGCTGTTCGCGGGGCTGTACGTGACGGCGCTGGGCATCGGCGGCATCAAGGGCTCCCTCCCGTCGCACGGCGCCGAGCAGTTCGACGAGCACGCGCCGCGGGGGCGGAAGGGGCGCTCCACCTTCTTCAACTACTTCGTCTTCTGCCTCTCCGTCGGCGCGCTCATCGCCGTCACGTTCGCCGTCTGGGTGGAGGACAACAAGGGGTGGCAGTGGGGGTTCGGCATCTCCACCATCGCCATCCTGCTCTCCATCCCGGTGTTCGTCGCCGGCTCGAGGCTGTACCGCAACAAGGTGCCCACGGGGAGCCCGCTCACCACCATCGCCAAGGTCGTCCTCGCCGCCGCGCTCGCTCGCCGCGGCGGCGCGCAGAGCGCCAGCAACGGCGCTGTCATCGACCGCGCGCCCAGCCCCACGGGGAGCACGGACATGAAGGAGTACTGCAAGCCCGGCGACATCTGCGGCGTCGCCGACGGCGCCGCCGAGGTGGCTACCGAGCCGTCGCAGGAGCTGGTGTTCCTGAACCGGGCGGTGCAGCGGCAGCCGCGGTGCGGGGCGCTGTCGTGCACGGTGCAGGAGGTGGAGGACGTCAAGATCGTGCTCATGGTGCTCCCGATCTTCTTCTCCACCATCATGCTCAACAGCTGCCTGGCGCAGCTGTCCACCTTCTCCGTGGAGCAGGCGGCGACGATGGACACCCGCGTCGGGGGGCTCAAGGTGCCGCCGGCGTCa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CB642400             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CGTTCGCGCGACGCGCCACGGGCACGGAGATGGGGATCACCCACCTGCAGCGCATCGGCACGGGGCTCGTCCTCTCCATCGTCGCCATGGCCGTCGCCGCCGTGGTGGAGGTGAAGCGCAAGAACGTGGCGTCCAACGCCGGAATGCTCGACGCGGCGGCGCCGCTGCCCATCACCTTCTTTTGGATCGCGTTCCAGTACCTGTTCCTGGGGTCCGCCGACCTGTTCACGCTGGCGGGGCTGCTCGAGTTCTTCTTCAGCGAGGCGCCGGCGAGGATGCGGTCGCTGGCGACGTCGCTGTCGTGGGCGTCGCTGGCGCTGGGGTACTACCTGAGCTCGGTGCTGGTGACGGTGGTGAACAGCGCGACGGGGCGCGGCGGGCGGCGGGCGTGGCTGCAGGGGGAGAACCTGAACCACTACCCCCTGGAGAGGTTCTACTGGGTGATGTGTGTGCTCAGCACGCTCAACTACCTCTTCTTCTTGTTCTGGGCCATCCGGTACAAGTACAGAAACGCCGGGGTCATCAAGGGATGATGATCAATCTGTAATGCAGGGTTAACTGTTTAATTATCTGGCAAGGTAAAAAAAGGAGGGAGGTTAATTTGGTGGTCTTGAGGATGCTCATTGCTGTGTGGAATTGGTTGGCTGGCTGTGGCCGATGAATGAAAAGAAGCAGCGATTAAGCAA                                                               ]
[+] EMBL AU222698             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TGGGCGTCGCTGGCGCTGGGGTACTACCTGAGCTCGGTGCTGGTGACGGTGGTGAACAGCGCGACGGGGCGCGGCGGGCGGCGGGCGTGGCTGCAGGGGGAGAACCTGAACCNCTACCACCTGGAGAGGTTCTACTGGGTGATGTGTGTGCTCAGCACGCTCAACTACCTCTTCTTCTTGTTCTGGGCCATCCGGTACAAGTACAGAAACGCCGGGGTCATCAAGGGATGATGATCAATCTGTAATGCAGGGTTAACTGTTTAATTATCTGGCAAGGTAAAAAAAGGAGGGAGGTTAATTTGGTGGTCTTGAGGATGCTCATTGCTGTGTGGAATTGGTTGGCTGGCTGTGGCCGATGAATGAAAAGAAGCAGCGATTAAGCAAGTTGTTCATAAATAGATCGGTGTTCAATGAAGGAAAAGAAAAATAGTGAAGATAATGCAAAAA]




>consensus_11936#0
AGACTCCTCGCCTCTGCTCCGCTGCTGCTTCCCTGTTCACCCGCCATTAGCGCGACCGAG
CTCGCTCGCTCCCGGTGCAAGTTGCACCGCCTACCGGCGGCGGCCATGGAGGACGGTGCG
GCGGCGCGGGAGGCGGAGAGGTGGGAGGGGTACGTCGACTGGAGGAACCGGCCGGCGGTG
CGCGGCCGGCACGGCGGCATGCTCGCCGCCTCCTTCGTTCTTGTGGTGGAGGTGCTCGAG
AACCTGGCGTTCCTGGCGAACGCGAGCAACCTGGTGACCTACCTGATGAATTTCATGCAC
TACTCGCCGTCGCAGTCGGCGACGACGGTGACCAACTTCATGGGCACCGCCTTCCTCCTC
GCCCTCCTTGGCGGCTTCCTCTCCGACGCCTTCTTCACCACCTACGCCATCTACCTCATC
AGCGCCTTTGTGGAATTCCTGGGGCTGGTGGTCCTGACGATCCAGGCGAGGACGCCGTCG
CTGATGCCGCCGGGGTGCGCCAAGGTTGCCGGCGCGGCGTGCGAGCCAGTGTCGGGGCCG
AAGAAGGCAATGCTGTTCGCGGGGCTGTACGTGACGGCGCTGGGCATCGGCGGCATCAAG
GGCTCCCTCCCGTCGCACGGCGCCGAGCAGTTCGACGAGCACGCGCCGCGGGGGCGGAAG
GGGCGCTCCACCTTCTTCAACTACTTCGTCTTCTGCCTCTCCGTCGGCGCGCTCATCGCC
GTCACGTTCGCCGTCTGGGTGGAGGACAACAAGGGGTGGCAGTGGGGGTTCGGCATCTCC
ACCATCGCCATCCTGCTCTCCATCCCGGTGTTCGTCGCCGGCTCGAGGCTGTACCGCAAC
AAGGTGCCCACGGGGAGCCCGCTCACCACCATCGCCAAGGTCGTCCTCGCCGCCGCGCTC
GCTCGCCGCGGCGGCGCGCAGAGCGCCAGCAACGGCGCTGTCATCGACCGCGCGCCCAGC
CCCACGGGGAGCACGGACATGAAGGAGTACTGCAAGCCCGGCGACATCTGCGGCGTCGCC
GACGGCGCCGCCGAGGTGGCTACCGAGCCGTCGCAGGAGCTGGTGTTCCTGAACCGGGCG
GTGCAGCGGCAGCCGCGGTGCGGGGCGCTGTCGTGCACGGTGCAGGAGGTGGAGGACGTC
AAGATCGTGCTCATGGTGCTCCCGATCTTCTTCTCCACCATCATGCTCAACAGCTGCCTG
GCGCAGCTGTCCACCTTCTCCGTGGAGCAGGCGGCGACGATGGACACCCGCGTCGGGGGG
CTCAAGGTGCCGCCGGCGTCGCTGCCGGTGTTCCCGGTCACCTTCATCATCCTCCTCGCC
CCGGTCTACGACCACATCATCATCCCGTTCGCGCGACGCGCCACGGGCACGGAGATGGGG
ATCACCCACCTGCAGCGCATCGGCACGGGGCTCGTCCTCTCCATCGTCGCCATGGCCGTC
GCCGCCGTGGTGGAGGTGAAGCGCAAGAACGTGGCGTCCAACGCCGGAATGCTCGACGCG
GCGGCGCCGCTGCCCATCACCTTCTTCTGGATCGCGTTCCAGTACCTGTTCCTGGGGTCC
GCCGACCTGTTCACGCTGGCGGGGCTGCTCGAGTTCTTCTTCAGCGAGGCGCCGGCGAGG
ATGCGGTCGCTGGCGACGTCGCTGTCGTGGGCGTCGCTGGCGCTGGGGTACTACCTGAGC
TCGGTGCTGGTGACGGTGGTGAACAGCGCGACGGGGCGCGGCGGGCGGCGGGCGTGGCTG
CAGGGGGAGAACCTGAACCACTACCACCTGGAGAGGTTCTACTGGGTGATGTGTGTGCTC
AGCACGCTCAACTACCTCTTCTTCTTGTTCTGGGCCATCCGGTACAAGTACAGAAACGCC
GGGGTCATCAAGGGATGATGATCAATCTGTAATGCAGGGTTAACTGTTTAATTATCTGGC
AAGGTAAAAAAAGGAGGGAGGTTAATTTGGTGGTCTTGAGGATGCTCATTGCTGTGTGGA
ATTGGTTGGCTGGCTGTGGCCGATGAATGAAAAGAAGCAGCGATTAAGCAAGTTGTTCAT
AAATAGATCGGTGTTCAATGAAGGAAAAGAAAAATAGTGAAGATAATGCAAAAA

consensusID : consensus_11936#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 758
fasta sequence 
                              [GTCCACCTTCTCCGTGGAGCAGGCGGCGACGATGGACACCCGCGTCGGGGGGCTCAAGGTGCCGCCGGCGTCGCTGCCGGTGTTCCCGGTCACCTTCATCATCCTCCTCGCCCCGGTCTACGACCACATCATCATCCCGTTCGCGCGACGCGCCACGGGCACGGAGATGGGGATCACCCACCTGCAGCGCATCGGCACGGGGCTCGTCCTCTCCATCGTCGCCATGGCCGTCGCCGCCGTGGTGGAGGTGAAGCGCAAGAACGTGGCGTCCAACGCCGGAATGCTCGACGCGGCGGCGCCGCTGCCCATCACCTTCTTATGGATCGCGTTCCAGTACCTGTTCCTGGGGTCCGCCGACCTGTTCACGCTGGCGGGGCTGCTCGAGTTCTTCTTCAGCGAGGCGCCGGCGAGGATGCGGTCGCTGGCGACGTCGCTGTCGTGGGCGTCGCTGGCGCTGGGGTACTACCTGAGCTCGGTGCTGGTGACGGTGGTGAACAGCGCGACGGGGCGCGGCGGGCGGCGGGCGTGGCTGCAGGGGGAGAACCTGAACCACTACCCCCTGGAGAGGTTCTACTGGGTGATGTGTGTGCTCAGCACGCTCAACTACCTCTTCTTCTTGTTATGGGCCATCCGGTACAAGTACAGAAACGCCGGGGTCATCAAGGGATGATGATCAATCTGTAATGCAGGGTTAACTGTTTAATTATCTGGCAAGGTAAAAAAAGGAGGGAGGTTAATTTGGTGGTCAAAAAAAAAGG]

[-] EMBL CB658313             [GTCCACCTTCTCCGTGGAGCAGGCGGCGACGATGGACACCCGCGTCGGGGGGCTCAAGGTGCCGCCGGCGTCGCTGCCGGTGTTCCCGGTCACCTTCATCATCCTCCTCGCCCCGGTCTACGACCACATCATCATCCCGTTCGCGCGACGCGCCACGGGCACGGAGATGGGGATCACCCACCTGCAGCGCATCGGCACGGGGCTCGTCCTCTCCATCGTCGCCATGGCCGTCGCCGCCGTGGTGGAGGTGAAGCGCAAGAACGTGGCGTCCAACGCCGGAATGCTCGACGCGGCGGCGCCGCTGCCCATCACCTTCTTATGGATCGCGTTCCAGTACCTGTTCCTGGGGTCCGCCGACCTGTTCACGCTGGCGGGGCTGCTCGAGTTCTTCTTCAGCGAGGCGCCGGCGAGGATGCGGTCGCTGGCGACGTCGCTGTCGTGGGCGTCGCTGGCGCTGGGGTACTACCTGAGCTCGGTGCTGGTGACGGTGGTGAACAGCGCGACGGGGCGCGGCGGGCGGCGGGCGTGGCTGCAGGGGGAGAACCTGAACCACTACCCCCTGGAGAGGTTCTACTGGGTGATGTGTGTGCTCAGCACGCTCAACTACCTCTTCTTCTTGTTATGGGCCATCCGGTACAAGTACAGAAACGCCGGGGTCATCAAGGGATGATGATCAATCTGTAATGCAGGGTTAACTGTTTAATTATCTGGCAAGGTAAAAAAAGGAGGGAGGTTAATTTGGTGGTCAAAAAAAAAGG]




>consensus_11936#1
GTCCACCTTCTCCGTGGAGCAGGCGGCGACGATGGACACCCGCGTCGGGGGGCTCAAGGT
GCCGCCGGCGTCGCTGCCGGTGTTCCCGGTCACCTTCATCATCCTCCTCGCCCCGGTCTA
CGACCACATCATCATCCCGTTCGCGCGACGCGCCACGGGCACGGAGATGGGGATCACCCA
CCTGCAGCGCATCGGCACGGGGCTCGTCCTCTCCATCGTCGCCATGGCCGTCGCCGCCGT
GGTGGAGGTGAAGCGCAAGAACGTGGCGTCCAACGCCGGAATGCTCGACGCGGCGGCGCC
GCTGCCCATCACCTTCTTATGGATCGCGTTCCAGTACCTGTTCCTGGGGTCCGCCGACCT
GTTCACGCTGGCGGGGCTGCTCGAGTTCTTCTTCAGCGAGGCGCCGGCGAGGATGCGGTC
GCTGGCGACGTCGCTGTCGTGGGCGTCGCTGGCGCTGGGGTACTACCTGAGCTCGGTGCT
GGTGACGGTGGTGAACAGCGCGACGGGGCGCGGCGGGCGGCGGGCGTGGCTGCAGGGGGA
GAACCTGAACCACTACCCCCTGGAGAGGTTCTACTGGGTGATGTGTGTGCTCAGCACGCT
CAACTACCTCTTCTTCTTGTTATGGGCCATCCGGTACAAGTACAGAAACGCCGGGGTCAT
CAAGGGATGATGATCAATCTGTAATGCAGGGTTAACTGTTTAATTATCTGGCAAGGTAAA
AAAAGGAGGGAGGTTAATTTGGTGGTCAAAAAAAAAGG

consensusID : consensus_11936#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 647
fasta sequence 
                              [TGGTTACCCGGCCCCCCCCCTCGAGGTTCGACCCCACGCGTNCCGTGTTCACGATTGCCGGGGCTGCTCAAGTTCTTCTTCAGCGAGGCCCCGGCNAGGATNCGTTCCGCTGGCGACGTCGCTGTCCGTGGCCGTCCTGCCGCTGGGGTACTACCTGAGCTCGGTGCTGGTGACGGTGGTGAACAGCGCGACGGGNCGCGGCGGGCGGCGGGCGTGGCTGCAGGGGGAGAACCTGAACCACTACCACCTGGAGAGGTTCTACTGGGTGATGTGTGTGCTCAGCACGCTCAACTACCTCTTCTTCTTGTTCTGGGCCATCCGGTACAAGTACAGAAACGCCGGGGTCATCAAGGGATGATGATCAATCTGTAATGCAGGGTTAACTGTTTAATTATCTGGCAAGGTAAAAAAAGGAGGGAGGTTAATTTGGTGGTCTTGAGGATGCTCATTGCTGTGTGGAATTGGTTGGCTGGCTGTGGCCGATGAATGAAAAGAAGCAGCGATTAAGCAAGTTGTTCATAAATAGATCGGTGTTCAATGAAGGAAAAGAAAAATAGTGAAGATAATGCATACTAAGTTCAGTTTATCTTTCACTGTTTTATATTGTTACGACCCATTAATAGTTGCTAACATTAAAAAAAAAAAAA]

[+] EMBL AU056617             [TGGTTACCCGGCCCCCCCCCTCGAGGTTCGACCCCACGCGTNCCGTGTTCACGATTGCCGGGGCTGCTCAAGTTCTTCTTCAGCGAGGCCCCGGCNAGGATNCGTTCCGCTGGCGACGTCGCTGTCCGTGGCCGTCCTGCCGCTGGGGTACTACCTGAGCTCGGTGCTGGTGACGGTGGTGAACAGCGCGACGGGNCGCGGCGGGCGGCGGGCGTGGCTGCAGGGGGAGAACCTGAACCACTACCACCTGGAGAGGTTCTACTGGGTGATGTGTGTGCTCAGCACGCTCAACTACCTCTTCTTCTTGTTCTGGGCCATCCGGTACAAGTACAGAAACGCCGGGGTCATCAAGGGATGATGATCAATCTGTAATGCAGGGTTAACTGTTTAATTATCTGGCAAGGTAAAAAAAGGAGGGAGGTTAATTTGGTGGTCTTGAGGATGCTCATTGCTGTGTGGAATTGGTTGGCTGGCTGTGGCCGATGAATGAAAAGAAGCAGCGATTAAGCAAGTTGTTCATAAATAGATCGGTGTTCAATGAAGGAAAAGAAAAATAGTGAAGATAATGCATACTAAGTTCAGTTTATCTTTCACTGTTTTATATTGTTACGACCCATTAATAGTTGCTAACATTAAAAAAAAAAAAA]




>consensus_11936#2
TGGTTACCCGGCCCCCCCCCTCGAGGTTCGACCCCACGCGTNCCGTGTTCACGATTGCCG
GGGCTGCTCAAGTTCTTCTTCAGCGAGGCCCCGGCNAGGATNCGTTCCGCTGGCGACGTC
GCTGTCCGTGGCCGTCCTGCCGCTGGGGTACTACCTGAGCTCGGTGCTGGTGACGGTGGT
GAACAGCGCGACGGGNCGCGGCGGGCGGCGGGCGTGGCTGCAGGGGGAGAACCTGAACCA
CTACCACCTGGAGAGGTTCTACTGGGTGATGTGTGTGCTCAGCACGCTCAACTACCTCTT
CTTCTTGTTCTGGGCCATCCGGTACAAGTACAGAAACGCCGGGGTCATCAAGGGATGATG
ATCAATCTGTAATGCAGGGTTAACTGTTTAATTATCTGGCAAGGTAAAAAAAGGAGGGAG
GTTAATTTGGTGGTCTTGAGGATGCTCATTGCTGTGTGGAATTGGTTGGCTGGCTGTGGC
CGATGAATGAAAAGAAGCAGCGATTAAGCAAGTTGTTCATAAATAGATCGGTGTTCAATG
AAGGAAAAGAAAAATAGTGAAGATAATGCATACTAAGTTCAGTTTATCTTTCACTGTTTT
ATATTGTTACGACCCATTAATAGTTGCTAACATTAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11936#0      AGACTCCTCGCCTCTGCTCCGCTGCTGCTTCCCTGTTCACCCGCCATTAGCGCGACCGAG 60
consensus_11936#1      ------------------------------------------------------------
consensus_11936#2      ------------------------------------------------------------
                                                                                   

consensus_11936#0      CTCGCTCGCTCCCGGTGCAAGTTGCACCGCCTACCGGCGGCGGCCATGGAGGACGGTGCG 120
consensus_11936#1      ------------------------------------------------------------
consensus_11936#2      ------------------------------------------------------------
                                                                                   

consensus_11936#0      GCGGCGCGGGAGGCGGAGAGGTGGGAGGGGTACGTCGACTGGAGGAACCGGCCGGCGGTG 180
consensus_11936#1      ------------------------------------------------------------
consensus_11936#2      ------------------------------------------------------------
                                                                                   

consensus_11936#0      CGCGGCCGGCACGGCGGCATGCTCGCCGCCTCCTTCGTTCTTGTGGTGGAGGTGCTCGAG 240
consensus_11936#1      ------------------------------------------------------------
consensus_11936#2      ------------------------------------------------------------
                                                                                   

consensus_11936#0      AACCTGGCGTTCCTGGCGAACGCGAGCAACCTGGTGACCTACCTGATGAATTTCATGCAC 300
consensus_11936#1      ------------------------------------------------------------
consensus_11936#2      ------------------------------------------------------------
                                                                                   

consensus_11936#0      TACTCGCCGTCGCAGTCGGCGACGACGGTGACCAACTTCATGGGCACCGCCTTCCTCCTC 360
consensus_11936#1      ------------------------------------------------------------
consensus_11936#2      ------------------------------------------------------------
                                                                                   

consensus_11936#0      GCCCTCCTTGGCGGCTTCCTCTCCGACGCCTTCTTCACCACCTACGCCATCTACCTCATC 420
consensus_11936#1      ------------------------------------------------------------
consensus_11936#2      ------------------------------------------------------------
                                                                                   

consensus_11936#0      AGCGCCTTTGTGGAATTCCTGGGGCTGGTGGTCCTGACGATCCAGGCGAGGACGCCGTCG 480
consensus_11936#1      ------------------------------------------------------------
consensus_11936#2      ------------------------------------------------------------
                                                                                   

consensus_11936#0      CTGATGCCGCCGGGGTGCGCCAAGGTTGCCGGCGCGGCGTGCGAGCCAGTGTCGGGGCCG 540
consensus_11936#1      ------------------------------------------------------------
consensus_11936#2      ------------------------------------------------------------
                                                                                   

consensus_11936#0      AAGAAGGCAATGCTGTTCGCGGGGCTGTACGTGACGGCGCTGGGCATCGGCGGCATCAAG 600
consensus_11936#1      ------------------------------------------------------------
consensus_11936#2      ------------------------------------------------------------
                                                                                   

consensus_11936#0      GGCTCCCTCCCGTCGCACGGCGCCGAGCAGTTCGACGAGCACGCGCCGCGGGGGCGGAAG 660
consensus_11936#1      ------------------------------------------------------------
consensus_11936#2      ------------------------------------------------------------
                                                                                   

consensus_11936#0      GGGCGCTCCACCTTCTTCAACTACTTCGTCTTCTGCCTCTCCGTCGGCGCGCTCATCGCC 720
consensus_11936#1      ------------------------------------------------------------
consensus_11936#2      ------------------------------------------------------------
                                                                                   

consensus_11936#0      GTCACGTTCGCCGTCTGGGTGGAGGACAACAAGGGGTGGCAGTGGGGGTTCGGCATCTCC 780
consensus_11936#1      ------------------------------------------------------------
consensus_11936#2      ------------------------------------------------------------
                                                                                   

consensus_11936#0      ACCATCGCCATCCTGCTCTCCATCCCGGTGTTCGTCGCCGGCTCGAGGCTGTACCGCAAC 840
consensus_11936#1      ------------------------------------------------------------
consensus_11936#2      ------------------------------------------------------------
                                                                                   

consensus_11936#0      AAGGTGCCCACGGGGAGCCCGCTCACCACCATCGCCAAGGTCGTCCTCGCCGCCGCGCTC 900
consensus_11936#1      ------------------------------------------------------------
consensus_11936#2      ------------------------------------------------------------
                                                                                   

consensus_11936#0      GCTCGCCGCGGCGGCGCGCAGAGCGCCAGCAACGGCGCTGTCATCGACCGCGCGCCCAGC 960
consensus_11936#1      ------------------------------------------------------------
consensus_11936#2      ------------------------------------------------------------
                                                                                   

consensus_11936#0      CCCACGGGGAGCACGGACATGAAGGAGTACTGCAAGCCCGGCGACATCTGCGGCGTCGCC 1020
consensus_11936#1      ------------------------------------------------------------
consensus_11936#2      ------------------------------------------------------------
                                                                                   

consensus_11936#0      GACGGCGCCGCCGAGGTGGCTACCGAGCCGTCGCAGGAGCTGGTGTTCCTGAACCGGGCG 1080
consensus_11936#1      ------------------------------------------------------------
consensus_11936#2      ------------------------------------------------------------
                                                                                   

consensus_11936#0      GTGCAGCGGCAGCCGCGGTGCGGGGCGCTGTCGTGCACGGTGCAGGAGGTGGAGGACGTC 1140
consensus_11936#1      ------------------------------------------------------------
consensus_11936#2      ------------------------------------------------------------
                                                                                   

consensus_11936#0      AAGATCGTGCTCATGGTGCTCCCGATCTTCTTCTCCACCATCATGCTCAACAGCTGCCTG 1200
consensus_11936#1      ------------------------------------------------------------
consensus_11936#2      ------------------------------------------------------------
                                                                                   

consensus_11936#0      GCGCAGCTGTCCACCTTCTCCGTGGAGCAGGCGGCGACGATGGACACCCGCGTCGGGGGG 1260
consensus_11936#1      --------GTCCACCTTCTCCGTGGAGCAGGCGGCGACGATGGACACCCGCGTCGGGGGG 52
consensus_11936#2      ------------------------------------------------------------
                                                                                   

consensus_11936#0      CTCAAGGTGCCGCCGGCGTCGCTGCCGGTGTTCCCGGTCACCTTCATCATCCTCCTCGCC 1320
consensus_11936#1      CTCAAGGTGCCGCCGGCGTCGCTGCCGGTGTTCCCGGTCACCTTCATCATCCTCCTCGCC 112
consensus_11936#2      ------------------------------------------------------------
                                                                                   

consensus_11936#0      CCGGTCTACGACCACATCATCATCCCGTTCGCGCGACGCGCCACGGGCACGGAGATGGGG 1380
consensus_11936#1      CCGGTCTACGACCACATCATCATCCCGTTCGCGCGACGCGCCACGGGCACGGAGATGGGG 172
consensus_11936#2      ------------------------------------------------------------
                                                                                   

consensus_11936#0      ATCACCCACCTGCAGCGCATCGGCACGGGGCTCGTCCTCTCCATCGTCGCCATGGCCGTC 1440
consensus_11936#1      ATCACCCACCTGCAGCGCATCGGCACGGGGCTCGTCCTCTCCATCGTCGCCATGGCCGTC 232
consensus_11936#2      ------------------------------------------------------------
                                                                                   

consensus_11936#0      GCCGCCGTGGTGGAGGTGAAGCGCAAGAACGTGGCGTCCAACGCCGGAATGCTCGACGCG 1500
consensus_11936#1      GCCGCCGTGGTGGAGGTGAAGCGCAAGAACGTGGCGTCCAACGCCGGAATGCTCGACGCG 292
consensus_11936#2      ------------------------------------------------------------
                                                                                   

consensus_11936#0      GCGGCGCCGCTGCCCATCACCTTCTTCTGGATCGCGTTCCAGTACCTGTTCCTGGGGTCC 1560
consensus_11936#1      GCGGCGCCGCTGCCCATCACCTTCTTATGGATCGCGTTCCAGTACCTGTTCCTGGGGTCC 352
consensus_11936#2      ------TGGTTACCCGGCCCCCCCCCTCGAGGTTCGACCC--CACGCGTNCCG------- 45
                               * * ***  * **  *    *     **  **   **  ** **        

consensus_11936#0      GCCGACCTGTTCACG-CTGGCGGGGCTGCTCGAGTTCTTCTTCAGCGAGGCGCCGGCGAG 1619
consensus_11936#1      GCCGACCTGTTCACG-CTGGCGGGGCTGCTCGAGTTCTTCTTCAGCGAGGCGCCGGCGAG 411
consensus_11936#2      -------TGTTCACGATTGCCGGGGCTGCTCAAGTTCTTCTTCAGCGAGGCCCCGGCNAG 98
                              ********  ** *********** ******************* ***** **

consensus_11936#0      GATGCGGTC-GCTGGCGACGTCGCTGTC-GTGGGCGTCGCTGGCGCTGGGGTACTACCTG 1677
consensus_11936#1      GATGCGGTC-GCTGGCGACGTCGCTGTC-GTGGGCGTCGCTGGCGCTGGGGTACTACCTG 469
consensus_11936#2      GATNCGTTCCGCTGGCGACGTCGCTGTCCGTGGCCGTC-CTGCCGCTGGGGTACTACCTG 157
                       *** ** ** ****************** **** **** *** *****************

consensus_11936#0      AGCTCGGTGCTGGTGACGGTGGTGAACAGCGCGACGGGGCGCGGCGGGCGGCGGGCGTGG 1737
consensus_11936#1      AGCTCGGTGCTGGTGACGGTGGTGAACAGCGCGACGGGGCGCGGCGGGCGGCGGGCGTGG 529
consensus_11936#2      AGCTCGGTGCTGGTGACGGTGGTGAACAGCGCGACGGGNCGCGGCGGGCGGCGGGCGTGG 217
                       ************************************** *********************

consensus_11936#0      CTGCAGGGGGAGAACCTGAACCACTACCACCTGGAGAGGTTCTACTGGGTGATGTGTGTG 1797
consensus_11936#1      CTGCAGGGGGAGAACCTGAACCACTACCCCCTGGAGAGGTTCTACTGGGTGATGTGTGTG 589
consensus_11936#2      CTGCAGGGGGAGAACCTGAACCACTACCACCTGGAGAGGTTCTACTGGGTGATGTGTGTG 277
                       **************************** *******************************

consensus_11936#0      CTCAGCACGCTCAACTACCTCTTCTTCTTGTTCTGGGCCATCCGGTACAAGTACAGAAAC 1857
consensus_11936#1      CTCAGCACGCTCAACTACCTCTTCTTCTTGTTATGGGCCATCCGGTACAAGTACAGAAAC 649
consensus_11936#2      CTCAGCACGCTCAACTACCTCTTCTTCTTGTTCTGGGCCATCCGGTACAAGTACAGAAAC 337
                       ******************************** ***************************

consensus_11936#0      GCCGGGGTCATCAAGGGATGATGATCAATCTGTAATGCAGGGTTAACTGTTTAATTATCT 1917
consensus_11936#1      GCCGGGGTCATCAAGGGATGATGATCAATCTGTAATGCAGGGTTAACTGTTTAATTATCT 709
consensus_11936#2      GCCGGGGTCATCAAGGGATGATGATCAATCTGTAATGCAGGGTTAACTGTTTAATTATCT 397
                       ************************************************************

consensus_11936#0      GGCAAGGTAAAAAAAGGAGGGAGGTTAATTTGGTGGTCTTGAGGATGCTCATTGCTGTGT 1977
consensus_11936#1      GGCAAGGTAAAAAAAGGAGGGAGGTTAATTTGGTGGTCAAAAAAAAAGG----------- 758
consensus_11936#2      GGCAAGGTAAAAAAAGGAGGGAGGTTAATTTGGTGGTCTTGAGGATGCTCATTGCTGTGT 457
                       **************************************   *  *               

consensus_11936#0      GGAATTGGTTGGCTGGCTGTGGCCGATGAATGAAAAGAAGCAGCGATTAAGCAAGTTGTT 2037
consensus_11936#1      ------------------------------------------------------------
consensus_11936#2      GGAATTGGTTGGCTGGCTGTGGCCGATGAATGAAAAGAAGCAGCGATTAAGCAAGTTGTT 517
                                                                                   

consensus_11936#0      CATAAATAGATCGGTGTTCAATGAAGGAAAAGAAAAATAGTGAAGATAATGCAAAAA--- 2094
consensus_11936#1      ------------------------------------------------------------
consensus_11936#2      CATAAATAGATCGGTGTTCAATGAAGGAAAAGAAAAATAGTGAAGATAATGCATACTAAG 577
                                                                                   

consensus_11936#0      ------------------------------------------------------------
consensus_11936#1      ------------------------------------------------------------
consensus_11936#2      TTCAGTTTATCTTTCACTGTTTTATATTGTTACGACCCATTAATAGTTGCTAACATTAAA 637
                                                                                   

consensus_11936#0      ----------
consensus_11936#1      ----------
consensus_11936#2      AAAAAAAAAA 647


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)