|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12001#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 692 fasta sequence
[CGAGAGCTCTCTCACCG-TCACT-GATACA-CCGAGACGAGCTAG-A-AATTAAC-T-GCA-TTT--CGATCGTCGACATGGCTTCC-AAGAACT-CCA-TGTCC-TCCTC-GCTTC-TCTTCC-TCA-TGGCGCTGC-TGCTCTCATGGAG-CTCCATCAGCAGCGCAGCT-CGC-TACCTGGAGGAGGAGGCCGCGCCCAAGGAGGAGTACCCGGAGCTT-CCGAAGCCCGAGCTGCCGCCGCACCTCGCCGTGCCGGAGCTGCCAAAGCCCG-AGCTGCCGCATGGCGCCGCCGTGCCGGAGTTT-CCGAAGGTGCCT-GAACTGCCACACCCCGAGGTG-CCGGAA-TTGCCGAAG-CCTGAATTGCCT-GAGCACCCTGCGGTGCCGGAGCTCCCGAAGCCTGAGCTGCCATCGTTGCCCAAGGTCGAGCTGCCGCCATTGCCCAAGCCTGAGTTCCACTTCCCGGAGCCGGAGGCCAAGCCATGATGAACGAGCGATCAGATAGAGCATCCGCGTATAGCGCGCGCGCCATTTTATCTGTACTGAATAATACTTGTGTGTGGTTTTTATTTGCGATGGTTCACTGTTTACGTATTCTGTATTCACTATCTACACTGGCTTGTATCAGTACATGATTACAGGTTAACCATGGAGTTGTGTTTATATTCATGTACAAATCAATATAATGGAGAGTTTTCTTTGAGTCAAAAAAAAAAA]
[+] EMBL AA754343 [CGAGAGCTCTCTCACCGBCCACTGGATACACCCGAGACGAGCTAG AVATTTAAC TCRCA TTTTCCGAACGTCGACATGGCTTCC AAGAACT CCA TGTCC TCCTC GCTTC TCTCTC TCA TGGCGCTGC TGCTCTCATRGAG CTCCATCAGCAGCGCA CT CGCATACCTGGAGGAGGAGGCCGCGCCCAAGGAGGAGTACCCGGAGCTT CCGAAGCCCGAGCTGCCGCCGCACCTCGCCGTGCCGGAGCTGCCAAAGCCCG AGCTGCCGCAT GCGCCGCCGTGCCGGAGTTT CCGAA GTGCCTSGAAC ]
[+] EMBL AK062673 [ CTCTCACCG TCACT GATACA CCGAGACGAGCTAG A AATTAAC T GCA TTT CGATCGTCGACATGGCTTCC AAGAACT CCA TGTCC TCCTC GCTTC TCTTCC TCA TGGCGCTGC TGCTCTCATGGAG CTCCATCAGCAGCGCAGCT CGC TACCTGGAGGAGGAGGCCGCGCCCAAGGAGGAGTACCCGGAGCTT CCGAAGCCCGAGCTGCCGCCGCACCTCGCCGTGCCGGAGCTGCCAAAGCCCG AGCTGCCGCATGGCGCCGCCGTGCCGGAGTTT CCGAAGGTGCCT GAACTGCCACACCCCGAGGTG CCGGAA TTGCCGAAG CCTGAATTGCCT GAGCACCCTGCGGTGCCGGAGCTCCCGAAGCCTGAGCTGCCATCGTTGCCCAAGGTCGAGCTGCCGCCATTGCCCAAGCCTGAGTTCCACTTCCCGGAGCCGGAGGCCAAGCCATGATGAACGAGCGATCAGATAGAGCATCCGCGTATAGCGCGCGCGCCATTTTATCTGTACTGAATAATACTTGTGTGTGGTTTTTATTTGCGATGGTTCACTGTTTACGTATTCTGTATTCACTATCTACACTGGCTTGTATCAGTACATGATTACAGGTTAACCATGGAGTTGTGTTTATATTCATGTACAAATCAATATAATGGAGA ]
[+] EMBL OSS15726A [ CACCG TCACT GATACA CCGAGACGAGCTAG A AATTAAC T GCA TTT CGATCGTNGACATNGCTTCC AAGAACT CCA TNTCC TCCTC GNTTC TCTTCC TCA TNGCGCTGC TGCTCTCATGGAG CTCCATCAGCAGCGCAG T CGC TACCTGGAGGAGGAGGCCGCGCCCAAGGAGGAGTACCCGGAGCTT CCGAAGNCCGAGCTGCCGCNGCACCTNGTCGTGCCGGAGCTGCCAAAGCCC ]
[+] EMBL AU031253 [ ctTAGNA AATTAACTT CCATTTT CGACCNTCGACATGGTTTCCAAAGAACTCCCATTGTCCTTCCTCGGCTTCTTCTTCCTTCATTGGCGCTGCTTNCTCTCATGGAGNTTCCATCAGCAGNGCAGCTCCGC TACCTGGAGGAGGAGGCCGCGCCCAAGGANGAGTACCCGNAGCTTCCCGAAGCCCGAGCTGCCGCCGCACCTCGCCGTGCCGGAGCTGCCAAAGCCCGAAGCTGCCNCATGGCNCCGCCGTGCCGGAGTTTCCCGAAGGTGCCT GAACTGCCACACCCCGAGGTGCCCGGAA TTGCCGAAG CCTGAATTGCCT GAGCACCCTGCGGTGCCGGAGCTCCCGAAGCCTGAGCTGCCATCGTTGCCCAAGGTCGAGCTGCCGCCATTGCCCAAGCCTGAGTTCCACTTCCCGGAGCCGGAGGCCAAGCCATGATGAACGAGCGATCAGATAGAGCATCCGCGTATAGCGCGCGCGCCATTTTATCTGTACTGAATAATACTTGTGTGTGGTTTTTATTTGCGATGGTTCACTGTTTACGTATTCTGTATTCACTATCTACACTGGCTTGTATCAGTACATGATTACAGGTTAACCATGGAGTTGTGTTTATATTCATGTACAAATCAATATAATGGAGAGTTTTCTTTGAGTCTGCAAAAAAA ]
[+] EMBL AU032880 [ GCCAAATGGCGCCGCCTTGCCGGANTTT CCGAAGGTGCCT GAACTGCCANACCCCGAGGTN CCGGAATTTGCCGAAGCCCTGAATTGCCTGGAGCACCTTGCGGTGCCGGAGCTCCCGAAGCCTGAGCTGCCATCGTTGCCCAAGGTCGAGCTGCCGCCATTGCCCAAGCCTGAGTTCCACTTCCCGGAGCCGGAGGCCAAGCCATGATGAACGAGCGATCAGATAGAGCATCCGCGTATAGCGCGCGCGCCATTTTATCTGTACTGAATAATACTTGTGTGTGGTTTTTATTTGCGATGGTTCACTGTTTACGTATTCTGTATTCACTATCTACACTGGCTTGTATCAGTACATGATTACAGGTTAACCATGGAGTTGTGTTTATATTCATGTACAAATCAATATAATGGAGAGTTTTCTTTGAGTCAAAAAAAAAAA]
[+] EMBL AU164801 [ CGAGGTG CCGGAA TTGCCGAAG CCTGAATTGCCT GAGCACCCTGCGGTGCCGGAGCTCCCGAAGCCTGAGCTGCCATCGTTGCCCAAGGTCGAGCTGCTGCCATTGCCCAAGCCTGAGTTCCACTTCCCGGAGCCGGAGGCCAAGCCATGATGAACGAGCGATCAGATAGAGCATCCGCGTATAGCGCGCGCGCCATTTTATCTGTACTGAATAATACTTGTGTGTGGTTTTTATTTGCGATGGTTCACTGTTTACGTATTCTGTATTCACTATCTACACTGGCTTGTATCAGTACATGATTACAGGTTAACCATGGAGTTGTGTTTATATTCATGTACAAATCAATATAATGGAGAGTTTTCTTTGA AAAAAAAAAA ]
[+] EMBL AU164804 [ nGAGGTG CCGGAA TTGCCGAAG CCTGAATTGCCT GAGCACCCTGCGGTGCCGGAGCTCCCGAAGCCTGAGCTGCCATCGTTGCCCAAGGTCGAGCTGCTGCCATTGCCCAAGCCTGAGTTCCACTTCCCGGAGCCGGAGGNCAAGCCATGATGAACGAGCGATCAGATAGAGCATCCGCGTATAGCGCGCGCGCCATTTTATCTGTACTGAATAATACTTGTGTGTGGTTTTTATTTGCGATGGTTCACTGTTTACGTATTCTGTATTCACTATCTACACTGGCTTGTATCAGTANATGATTACAGGTTAACCATGGAGTTGTGTTTATATTCATGTACAAATCAATATAATGGAGAGTTTTCTTTGA AAAAAAAAAA ]
consensusID : consensus_12001#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence
[AGCATTTCGACGACATGGTTTCCAAGAACTTCATGTCCTCCTCGCTTCTCTTCCTCATGGCGCTGCTGCTCTCATGGAGCTCTATCAGCAGCGCAGCTCGCTACCTGGAGGAGGAGGCTGCGCCCAAGGAGGAGTACCCGGAGCTGCCAAAGCCTGAGCTGCCGCATGGCGCCGCCGTGCCGGAGTTTCCGAAGGTGCCTGAACTGCCGCACCCGGAAGTGCCGGAGCTGCCGAAGGTGCCTGAACTGCCGCACCCCAAGGTGCCGGAATTGCCGAAGGTGCCGGAGTTGCCGAAGCCTGAATTGCCTGAGCACCCTGCTGTGCCGGAGCTCCCGAAGCCCGAGCTGCCATCGTTGCCCAAGGTCGAGCTGCCGCCATTGCCCAAGCCTGAGTTCCACTTCCCGGAGCCGGAGGCCAAGCCATGATGAACGATCACTCGATCAGATATACAGCATCCGCGTCTAGCGCGCGCGCCATTTTATCTATACTGAATAATACTTGTGTGTGGTTTTTATTTGCGATGGTTCACTGTTTACGTATTCTGTATTCACTATCTACACTAGCTTGTATCAGTACATGATTACAGGTTTACCATGGAGTTGTGTTTATATTC]
[+] EMBL CA756118 [AGCATTTCGACGACATGGTTTCCAAGAACTTCATGTCCTCCTCGCTTCTCTTCCTCATGGCGCTGCTGCTCTCATGGAGCTCTATCAGCAGCGCAGCTCGCTACCTGGAGGAGGAGGCTGCGCCCAAGGAGGAGTACCCGGAGCTGCCAAAGCCTGAGCTGCCGCATGGCGCCGCCGTGCCGGAGTTTCCGAAGGTGCCTGAACTGCCGCACCCGGAAGTGCCGGAGCTGCCGAAGGTGCCTGAACTGCCGCACCCCAAGGTGCCGGAATTGCCGAAGGTGCCGGAGTTGCCGAAGCCTGAATTGCCTGAGCACCCTGCTGTGCCGGAGCTCCCGAAGCCCGAGCTGCCATCGTTGCCCAAGGTCGAGCTGCCGCCATTGCCCAAGCCTGAGTTCCACTTCCCGGAGCCGGAGGCCAAGCCATGATGAACGATCACTCGATCAGATATACAGCATCCGCGTCTAGCGCGCGCGCCATTTTATCTATACTGAATAATACTTGTGTGTGGTTTTTATTTGCGATGGTTCACTGTTTACGTATTCTGTATTCACTATCTACACTAGCTTGTATCAGTACATGATTACAGGTTTACCATGGAGTTGTGTTTATATTC]
consensusID : consensus_12001#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 562 fasta sequence
[CACCGAGACGAGCTAGAAATTAACTGCATTTCGAACGTCGACATGGCTTCCAAGAACTCCATGTCCTCCTCGCTTCTCTTCCTCATGGCGCTGCTGCTCTCATGGAGCTCCATCAGCAGCGCAGCTCGCTACCTGGAGGAGGAGGCCGCGCCCAAGGAGGAGTACCCGGAGCTTCCGAAGCCCGAGCTGCCGCCGCACCTCGCCGTGCCGGAGCTGCCAAAGCCCGAGCTGCCGCATGGCGCCGCCGTGCCGGAGTTTCCGAAGGTGCCTGAACTGCCACACCCCGAGGTGCCGGAATTGCCGAAGCCTGAATTGCCTGAGCACCCTGCGGTGCCGGAGCTCCCGAAGCCTGAGCTGCCATCGTTGCCCAAGGTCGAGCTGCCGCCATTGCCCAAGCCTGAGTTCCACTTCCCGGAGCCGGAGGCCAAGCCATGATGAACGAGCGATCAGATAGAGCATCCGCGTATAGCGCGCGCGCCATTTTATCTGTACTGAATAATACTTGTGTGTGGTTTTTATTTGCGATGGGTCACTGTGTACGTATTCTGTAAAAAAAAAAAAA]
[+] EMBL CA758647 [CACCGAGACGAGCTAGAAATTAACTGCATTTCGAACGTCGACATGGCTTCCAAGAACTCCATGTCCTCCTCGCTTCTCTTCCTCATGGCGCTGCTGCTCTCATGGAGCTCCATCAGCAGCGCAGCTCGCTACCTGGAGGAGGAGGCCGCGCCCAAGGAGGAGTACCCGGAGCTTCCGAAGCCCGAGCTGCCGCCGCACCTCGCCGTGCCGGAGCTGCCAAAGCCCGAGCTGCCGCATGGCGCCGCCGTGCCGGAGTTTCCGAAGGTGCCTGAACTGCCACACCCCGAGGTGCCGGAATTGCCGAAGCCTGAATTGCCTGAGCACCCTGCGGTGCCGGAGCTCCCGAAGCCTGAGCTGCCATCGTTGCCCAAGGTCGAGCTGCCGCCATTGCCCAAGCCTGAGTTCCACTTCCCGGAGCCGGAGGCCAAGCCATGATGAACGAGCGATCAGATAGAGCATCCGCGTATAGCGCGCGCGCCATTTTATCTGTACTGAATAATACTTGTGTGTGGTTTTTATTTGCGATGGGTCACTGTGTACGTATTCTGTAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12001#0 CGAGAGCTCTCTCACCGTCACTGATACACCGAGACGAGCTAGAAATTAACTGCATTTCGA 60
consensus_12001#2 --------------------------CACCGAGACGAGCTAGAAATTAACTGCATTTCGA 34
consensus_12001#1 --------------------------------------------------AGCATTTCGA 10
*********
consensus_12001#0 TCGTCGACATGGCTTCCAAGAACTCCATGTCCTCCTCGCTTCTCTTCCTCATGGCGCTGC 120
consensus_12001#2 ACGTCGACATGGCTTCCAAGAACTCCATGTCCTCCTCGCTTCTCTTCCTCATGGCGCTGC 94
consensus_12001#1 ----CGACATGGTTTCCAAGAACTTCATGTCCTCCTCGCTTCTCTTCCTCATGGCGCTGC 66
******** *********** ***********************************
consensus_12001#0 TGCTCTCATGGAGCTCCATCAGCAGCGCAGCTCGCTACCTGGAGGAGGAGGCCGCGCCCA 180
consensus_12001#2 TGCTCTCATGGAGCTCCATCAGCAGCGCAGCTCGCTACCTGGAGGAGGAGGCCGCGCCCA 154
consensus_12001#1 TGCTCTCATGGAGCTCTATCAGCAGCGCAGCTCGCTACCTGGAGGAGGAGGCTGCGCCCA 126
**************** *********************************** *******
consensus_12001#0 AGGAGGAGTACCCGGAGCTTCCGAAGCCCGAGCTGCCGCCGCACCTCGCCGTGCCGGAGC 240
consensus_12001#2 AGGAGGAGTACCCGGAGCTTCCGAAGCCCGAGCTGCCGCCGCACCTCGCCGTGCCGGAGC 214
consensus_12001#1 AGGAGGAGTACCCGGAGCTGCCAAAGCCTGAGCTGCCGCATGGCGCCGCCGTGCCGGAGT 186
******************* ** ***** ********** * *************
consensus_12001#0 TGCCAAAG---CCCGAGCTGCCGCATGGCGCCGCCGTGCCGGAGTTTCCGAAGGTGCCTG 297
consensus_12001#2 TGCCAAAG---CCCGAGCTGCCGCATGGCGCCGCCGTGCCGGAGTTTCCGAAGGTGCCTG 271
consensus_12001#1 TTCCGAAGGTGCCTGAACTGCCGCA---CCCGGAAGTGCCGGAGCTGCCGAAGGTGCCTG 243
* ** *** ** ** ******** * * * ********* * *************
consensus_12001#0 AACTGCCACACCCCGAGGTGCCGGAATTGCCGAAG------------------CCTGAAT 339
consensus_12001#2 AACTGCCACACCCCGAGGTGCCGGAATTGCCGAAG------------------CCTGAAT 313
consensus_12001#1 AACTGCCGCACCCCAAGGTGCCGGAATTGCCGAAGGTGCCGGAGTTGCCGAAGCCTGAAT 303
******* ****** ******************** *******
consensus_12001#0 TGCCTGAGCACCCTGCGGTGCCGGAGCTCCCGAAGCCTGAGCTGCCATCGTTGCCCAAGG 399
consensus_12001#2 TGCCTGAGCACCCTGCGGTGCCGGAGCTCCCGAAGCCTGAGCTGCCATCGTTGCCCAAGG 373
consensus_12001#1 TGCCTGAGCACCCTGCTGTGCCGGAGCTCCCGAAGCCCGAGCTGCCATCGTTGCCCAAGG 363
**************** ******************** **********************
consensus_12001#0 TCGAGCTGCCGCCATTGCCCAAGCCTGAGTTCCACTTCCCGGAGCCGGAGGCCAAGCCAT 459
consensus_12001#2 TCGAGCTGCCGCCATTGCCCAAGCCTGAGTTCCACTTCCCGGAGCCGGAGGCCAAGCCAT 433
consensus_12001#1 TCGAGCTGCCGCCATTGCCCAAGCCTGAGTTCCACTTCCCGGAGCCGGAGGCCAAGCCAT 423
************************************************************
consensus_12001#0 GATGAACGAGC----GATCAGATAGA--GCATCCGCGTATAGCGCGCGCGCCATTTTATC 513
consensus_12001#2 GATGAACGAGC----GATCAGATAGA--GCATCCGCGTATAGCGCGCGCGCCATTTTATC 487
consensus_12001#1 GATGAACGATCACTCGATCAGATATACAGCATCCGCGTCTAGCGCGCGCGCCATTTTATC 483
********* * ********* * ********** *********************
consensus_12001#0 TGTACTGAATAATACTTGTGTGTGGTTTTTATTTGCGATGGTTCACTGTTTACGTATTCT 573
consensus_12001#2 TGTACTGAATAATACTTGTGTGTGGTTTTTATTTGCGATGGGTCACTGTGTACGTATTCT 547
consensus_12001#1 TATACTGAATAATACTTGTGTGTGGTTTTTATTTGCGATGGTTCACTGTTTACGTATTCT 543
* *************************************** ******* **********
consensus_12001#0 GTATTCACTATCTACACTGGCTTGTATCAGTACATGATTACAGGTTAACCATGGAGTTGT 633
consensus_12001#2 GTAAAAAAAAAAAAA--------------------------------------------- 562
consensus_12001#1 GTATTCACTATCTACACTAGCTTGTATCAGTACATGATTACAGGTTTACCATGGAGTTGT 603
*** * * *
consensus_12001#0 GTTTATATTCATGTACAAATCAATATAATGGAGAGTTTTCTTTGAGTCAAAAAAAAAAA 692
consensus_12001#2 -----------------------------------------------------------
consensus_12001#1 GTTTATATTC------------------------------------------------- 613
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||