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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_121#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1521 fasta sequence
[GCCTTCTTCTTCACCTGGGTTTCGCCCCCATAAGGCCGGAGATGGGATGCTTCAATTCCAAGCCAAACGACACCGGTGCGATCAGAAGAAGACCCGGGAGCATAGGCGAGGTGGCTGTGTTCGTGCCTGGATTGAGAGTACCCGAGAGCTCGGATGAGCTGCCCCTTCAGCCGCTAGGTGATGGCCTCCCAAGGAGGCTCACCGAACGCCTGGCCGCGTTGAGGAATCGGATAATTGTCATGGCTGCTCATGAGGCACTGTACATGACCAAGCCCACCTGGAGGATCACCATCACTCAGCATGGGGGGTCTAAGTCAGCTGATCTTCTGCAAGCTTTGGAGGATTACTTGCCCACTCTTCTTGGCCTAGTAAAAGATGGGAGCGAGTTGGAAGATAAGGTACAGTTTGCATGGATGAACCAAGAGGATGACGCAGAGGATACGTCAATGCCCAGTGCTTGGTATGAGGTGCTATCAGTTCTACACTTGATGGCTCTGCTGCGTTTGTCCCAAGCAAATTCCCTTCTTGTTCCAAAGACATCCATTGAGGGATACCATGCTAAGGTATCTGAAGAAAACAAACGAGCTTCAGTGGAGATATTTCTCAAGGCAGCCGGATACTTGGAGTGTGCAATCCAGCATGTTCTACCTAAGATATCGCCGGAGAAAAGGAAAGGTCTTCCTGTGGACTTAGCTGAAGGAATCCTGAAAGCTATCTGCATGCAAGCCCTGGGTCAAGCAATTGATGTTCAGCTTGGATTGGCAATTGACAGTCCAAAGGCTACCTTGGCAGTGAAGAGGAGGCTGGCATGTGAGATGGTCAAGTGCTGGCAGCAGGCACATGGAAGCATTTCGGACCTACCTCTGCTTGATGGCTGGGCAGAAAAGCACAGGCTCTTTGTTACATGGAAACACATCGAAGCAAAAGCTGCGGCATACTACTACCATGGACTAATCCTTGATGAAGGAAACAGTGAGAAATCTCATAGGACGGCGGTGGCAGCGCTGCAATCAGCGGAGGAGTTGCTCAAAGAGAGCGAAGCTGCATGTGAAGCCTTCCATGCGGCATCTCCTGTTTCAAGAAGCCCGCCGCTGTGGGGATCGATGAGGTATCTTCAGGAGAAGATACACAAGGAGTCGTCGTGCAAAGTTCGGATCAACAAGGACCTCTACAACAAGGACAACATCATCATCCATGACCATGCTGACAGCGCGCCGCCGCTGCCGGACTTCGCCGTGGCTCTCAAACCCGACGAGTATCGCCTTCCTCCCCCACTCACTGACACCAATTAAGGATCGAGTCGACAAGGGAGAAATTATTAAGGTCCAAGGCATCATGCAGATGCAGAGGAGGAAGAATCAATCAAATAAAATCTATTATGTATATTCATTCATATTGTGCCATGTATGTATGCATGGGTGTCACACCGCACCACATGTTGCAAGAAAAATGAAAGAGAAGCTAGTTACTACTACCTCCATACATATATGTATGACATTGACTAGTATAAATTTGAACTAG]
[+] EMBL AK070854 [GCCTTCTTCTTCACCTGGGTTTCGCCCCCATAAGGCCGGAGATGGGATGCTTCAATTCCAAGCCAAACGACACCGGTGCGATCAGAAGAAGACCCGGGAGCATAGGCGAGGTGGCTGTGTTCGTGCCTGGATTGAGAGTACCCGAGAGCTCGGATGAGCTGCCCCTTCAGCCGCTAGGTGATGGCCTCCCAAGGAGGCTCACCGAACGCCTGGCCGCGTTGAGGAATCGGATAATTGTCATGGCTGCTCATGAGGCACTGTACATGACCAAGCCCACCTGGAGGATCACCATCACTCAGCATGGGGGGTCTAAGTCAGCTGATCTTCTGCAAGCTTTGGAGGATTACTTGCCCACTCTTCTTGGCCTAGTAAAAGATGGGAGCGAGTTGGAAGATAAGGTACAGTTTGCATGGATGAACCAAGAGGATGACGCAGAGGATACGTCAATGCCCAGTGCTTGGTATGAGGTGCTATCAGTTCTACACTTGATGGCTCTGCTGCGTTTGTCCCAAGCAAATTCCCTTCTTGTTCCAAAGACATCCATTGAGGGATACCATGCTAAGGTATCTGAAGAAAACAAACGAGCTTCAGTGGAGATATTTCTCAAGGCAGCCGGATACTTGGAGTGTGCAATCCAGCATGTTCTACCTAAGATATCGCCGGAGAAAAGGAAAGGTCTTCCTGTGGACTTAGCTGAAGGAATCCTGAAAGCTATCTGCATGCAAGCCCTGGGTCAAGCAATTGATGTTCAGCTTGGATTGGCAATTGACAGTCCAAAGGCTACCTTGGCAGTGAAGAGGAGGCTGGCATGTGAGATGGTCAAGTGCTGGCAGCAGGCACATGGAAGCATTTCGGACCTACCTCTGCTTGATGGCTGGGCAGAAAAGCACAGGCTCTTTGTTACATGGAAACACATCGAAGCAAAAGCTGCGGCATACTACTACCATGGACTAATCCTTGATGAAGGAAACAGTGAGAAATCTCATAGGACGGCGGTGGCAGCGCTGCAATCAGCGGAGGAGTTGCTCAAAGAGAGCGAAGCTGCATGTGAAGCCTTCCATGCGGCATCTCCTGTTTCAAGAAGCCCGCCGCTGTGGGGATCGATGAGGTATCTTCAGGAGAAGATACACAAGGAGTCGTCGTGCAAAGTTCGGATCAACAAGGACCTCTACAACAAGGACAACATCATCATCCATGACCATGCTGACAGCGCGCCGCCGCTGCCGGACTTCGCCGTGGCTCTCAAACCCGACGAGTATCGCCTTCCTCCCCCACTCACTGACACCAATTAAGGATCGAGTCGACAAGGGAGAAATTATTAAGGTCCAAGGCATCATGCAGATGCAGAGGAGGAAGAATCAATCAAATAAAATCTATTATGTATATTCATTCATATTGTGCCATGTATGTATGCATGGGTGTCACACCGCACCACATGTTGCAAGAAAAATGAAAGAGAAGCTAGTTACTACTACCTCCATACATATATGTATGACATTGACTAGTATAAATTTGAACTAG]
consensusID : consensus_121#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 182 fasta sequence
[GNAGGGCTGATGGTAAGGGAGGTTGGAGCCAGCTGAGTTGAAATATTTCTCAAGGCAGCTGGGTACTTAGAGTGTGCTATCCAGCACGCTCTCCTGAAGATATCGCCTGAAAAAAGGTCTTCCTGTGGACCTAACTGAAGGAATCCTGAAAGCTATCTGCATGCAAGCCTCAGGGTCAAATA]
[+] EMBL AA750208 [GNAGGGCTGATGGTAAGGGAGGTTGGAGCCAGCTGAGTTGAAATATTTCTCAAGGCAGCTGGGTACTTAGAGTGTGCTATCCAGCACGCTCTCCTGAAGATATCGCCTGAAAAAAGGTCTTCCTGTGGACCTAACTGAAGGAATCCTGAAAGCTATCTGCATGCAAGCCTCAGGGTCAAATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_121#0 GCCTTCTTCTTCACCTGGGTTTCGCCCCCATAAGGCCGGAGATGGGATGCTTCAATTCCA 60
consensus_121#1 ------------------------------------------------------------
consensus_121#0 AGCCAAACGACACCGGTGCGATCAGAAGAAGACCCGGGAGCATAGGCGAGGTGGCTGTGT 120
consensus_121#1 ------------------------------------------------------------
consensus_121#0 TCGTGCCTGGATTGAGAGTACCCGAGAGCTCGGATGAGCTGCCCCTTCAGCCGCTAGGTG 180
consensus_121#1 ------------------------------------------------------------
consensus_121#0 ATGGCCTCCCAAGGAGGCTCACCGAACGCCTGGCCGCGTTGAGGAATCGGATAATTGTCA 240
consensus_121#1 ------------------------------------------------------------
consensus_121#0 TGGCTGCTCATGAGGCACTGTACATGACCAAGCCCACCTGGAGGATCACCATCACTCAGC 300
consensus_121#1 ------------------------------------------------------------
consensus_121#0 ATGGGGGGTCTAAGTCAGCTGATCTTCTGCAAGCTTTGGAGGATTACTTGCCCACTCTTC 360
consensus_121#1 ------------------------------------------------------------
consensus_121#0 TTGGCCTAGTAAAAGATGGGAGCGAGTTGGAAGATAAGGTACAGTTTGCATGGATGAACC 420
consensus_121#1 ------------------------------------------------------------
consensus_121#0 AAGAGGATGACGCAGAGGATACGTCAATGCCCAGTGCTTGGTATGAGGTGCTATCAGTTC 480
consensus_121#1 ------------------------------------------------------------
consensus_121#0 TACACTTGATGGCTCTGCTGCGTTTGTCCCAAGCAAATTCCCTTCTTGTTCCAAAGACAT 540
consensus_121#1 ------------------------------------------------------------
consensus_121#0 CCATTGAGGGATACCATGCTAAGGTATCTGAAGAAAACAAACGAGCTTCAGTGGAGATAT 600
consensus_121#1 ----GNAGGGCTG--ATGGTAAGGGAGGTTGG-------AGCCAGCTG-AGTTGAAATAT 46
**** * *** ***** * * * * **** *** ** ****
consensus_121#0 TTCTCAAGGCAGCCGGATACTTGGAGTGTGCAATCCAGCATGTTCTACCTAAGATATCGC 660
consensus_121#1 TTCTCAAGGCAGCTGGGTACTTAGAGTGTGCTATCCAGCACGCTCTCCTGAAGATATCGC 106
************* ** ***** ******** ******** * *** * **********
consensus_121#0 CGGAGAAAAGGAAAGGTCTTCCTGTGGACTTAGCTGAAGGAATCCTGAAAGCTATCTGCA 720
consensus_121#1 CTGAAAAAAGG-----TCTTCCTGTGGACCTAACTGAAGGAATCCTGAAAGCTATCTGCA 161
* ** ****** ************* ** ***************************
consensus_121#0 TGCAAGCCCT-GGGTCAAGCAATTGATGTTCAGCTTGGATTGGCAATTGACAGTCCAAAG 779
consensus_121#1 TGCAAGCCTCAGGGTCAAATA--------------------------------------- 182
******** ******* *
consensus_121#0 GCTACCTTGGCAGTGAAGAGGAGGCTGGCATGTGAGATGGTCAAGTGCTGGCAGCAGGCA 839
consensus_121#1 ------------------------------------------------------------
consensus_121#0 CATGGAAGCATTTCGGACCTACCTCTGCTTGATGGCTGGGCAGAAAAGCACAGGCTCTTT 899
consensus_121#1 ------------------------------------------------------------
consensus_121#0 GTTACATGGAAACACATCGAAGCAAAAGCTGCGGCATACTACTACCATGGACTAATCCTT 959
consensus_121#1 ------------------------------------------------------------
consensus_121#0 GATGAAGGAAACAGTGAGAAATCTCATAGGACGGCGGTGGCAGCGCTGCAATCAGCGGAG 1019
consensus_121#1 ------------------------------------------------------------
consensus_121#0 GAGTTGCTCAAAGAGAGCGAAGCTGCATGTGAAGCCTTCCATGCGGCATCTCCTGTTTCA 1079
consensus_121#1 ------------------------------------------------------------
consensus_121#0 AGAAGCCCGCCGCTGTGGGGATCGATGAGGTATCTTCAGGAGAAGATACACAAGGAGTCG 1139
consensus_121#1 ------------------------------------------------------------
consensus_121#0 TCGTGCAAAGTTCGGATCAACAAGGACCTCTACAACAAGGACAACATCATCATCCATGAC 1199
consensus_121#1 ------------------------------------------------------------
consensus_121#0 CATGCTGACAGCGCGCCGCCGCTGCCGGACTTCGCCGTGGCTCTCAAACCCGACGAGTAT 1259
consensus_121#1 ------------------------------------------------------------
consensus_121#0 CGCCTTCCTCCCCCACTCACTGACACCAATTAAGGATCGAGTCGACAAGGGAGAAATTAT 1319
consensus_121#1 ------------------------------------------------------------
consensus_121#0 TAAGGTCCAAGGCATCATGCAGATGCAGAGGAGGAAGAATCAATCAAATAAAATCTATTA 1379
consensus_121#1 ------------------------------------------------------------
consensus_121#0 TGTATATTCATTCATATTGTGCCATGTATGTATGCATGGGTGTCACACCGCACCACATGT 1439
consensus_121#1 ------------------------------------------------------------
consensus_121#0 TGCAAGAAAAATGAAAGAGAAGCTAGTTACTACTACCTCCATACATATATGTATGACATT 1499
consensus_121#1 ------------------------------------------------------------
consensus_121#0 GACTAGTATAAATTTGAACTAG 1521
consensus_121#1 ----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||