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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12143#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 856 fasta sequence
[ATGTNATTTCTTGCCAAGTGCTCTGAA-TGTCAAAA-TGAAA-AAATTCAACCCAAGCGCGGGTAAACGGCGGGAAGTAACTATGACTCTCTTAAGGTAGCNAAATGCCTCGTCAT-CTAATT-AGTGACG-C-GCATGAATGGATTAACGAGATT-CCC-ACTGTCCCTGTCTACTATCC-AGCGAAACCACAG-CNAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGGATAAGTGGG-ACCCTCGGGCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAGTCGG-ANANG-GGCCTGGCCCCTCCTTTTGG-C-TNCNT-NA-CGAGTCCCTCGGGCCGATCCGGGCGGAAGACATTGTCAGGTGGGGAGTTTGGCTAGGG-GCGGNCCNGNCNGGGGATCGGAAGGGAACCCCGGCGGGACGTCGTCGAGAGCGGGGGCCATGGGCGCCGCCGGGAAGGCGTCCGGCATGGACGGCGGCGGCGGGGCGCGCGCGTCGTCGCGGCGCTTGAGCAGGTACTGGTCCTTCTTCTTGGCCCTGGGCTTCATCGCCGCCGCGCTGGGCATGATCTTCTCCATGAGCCTCGCCGCCGTGCTGGCCGCGCTGCCCTTCCGGCGGCGGCCGCCGGGATTCTCCGCCGCCTTCTTGCGGCCCTTCGCCGGACGACCTGCAAACGCATCGTAGCCACACATCAAGACCAAGTCAACGCAAATGGTTTTCCATTTTTATATATATGAAATATAAAACAACAATAAACTAATTTAAATATTGTGATTGAGCTAGTGGAAATTATATCA]
[-] EMBL AU069254 [ATGTNATTTCTTGCCAAGTGCTCTGAATTGTCAAAAGTGAAG AAATTCAACCCAAGCGCGGGTAAACGGCGGGAAGTAACTATGACTCTCTTAAGGTAGCNAAATGCCTCGTCAT CTAATT AGTGACG C GCATGAATGGATTAACGAGATT CCN ACTGTCCCTGTCTACTATCC AGCGAAACCACAG CNAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGGATAAGTGGG ACCCTCGGGCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAGTCGG ANANGCGGCCTGGCCCCTCCTTTTGG C TTCNTCAA CGAGTCCCTCGGGCNGATCCGGGCGGAAGACATTGTCAGGTGGGGAGTTTGGC ]
[-] EMBL AU069147 [ tgcCCCAGTGCTCTGAA TGTCAAAA TGAAAGAAATTCAACCCAAGCGCGGGTAAACGGCGGGAAGTAACTATGACTCTCTTAAGGTAGCNAAATGCCTCGTCAT CTAATT AGTGACG C GCATGAATGGATTAACGAGATTCCCC ACTGTCCCTGTCTACTATCC AGCGAAACCACAG CNAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGGATAAGTGGG ACCCTCGGGCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAGTCGG ANANGCGGCCTGGCCCCTCCTTTTGG C TNCNT NANCGAGTCCCTCGGGCCGATCCGGGCGGAAGACATTGTCAGGTTGGGAGTTTGGC ]
[-] EMBL AU069160 [ GTCAAAT TGAAA AAATTCAACCAAAGCCCGGGTAAACGGCGGGAAGTACCTAT NCTCTCTTAAGGTAGCCAAATGCCTCGTCAT CTAATT AGTGACG C GCATGAATGGATTAACGAGATTCCCC ACTGTCCCTGTCTACTATCC AGCGAAACCACAG CCAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGGATAAGTGGGNANCCTCGGGCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAGTCGGNANATG GGCCTGGCCCCTCCTTTTGGCC TNCNT NA CAGGTCCCTCGGGCCGATCCGGGCGGAAGACATTGTCAGGTGGGGAGTTTGGC ]
[-] EMBL AU069121 [ tnaaTCTCTTAAGGTAGCCAAATGCCTCGTCAT CTAATT AGTGACG C GCATGAATGGATTAACGAGATT CCC ACTGTCCCTGTCTACTATCC AGCGAAACCACAG CNAAGGGAACGGGCTTGGCGGAATCAGNGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGGATAAGTGGG ANCCTCGGGCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAGTNGGNANATG GGCCTGGCCCCTCCTTTTGGNC TNCNT AA CNNGTCCCTCGGGCCGATCCGGGCGGAAGACATTGTCAGGTGGGGAGTTTGGCT ]
[-] EMBL AU163376 [ CGTCAT CTAATT AGTGACGCC GCATGAATGGATTAACGAGATT CCC ACTGTCCCTGTCTACTATCC AGCGAAACCACAGCCCAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGGATAAGTGGG ACCCTCGGGCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAGTCGG ATAGGCGGCCTGGCCCCTCCTTTTGG CATGCGT NA CANGTCCCTCGGGCCGANCCGGGCGGAAGACATTGTCAGGTGGGGAGTTTGGC ]
[-] EMBL OSC170 [ GTCATCCTAATTAAGTGACG CGGCATGAATGGATTAACGAGATT CCCNACTGTCCCTGTCTACTATCCAAGCGAAACCACAG CTAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGGATAAGTGGG ACCCTCGGGCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAGTCGG ANANGCGGCCTGGCCCCTCCTTTTGG C TNCNT NANCGAGTCCCTCGGGCCGATCCGGGCGGAAGACATTGTCAGGTGGGGAGTTTGGCTAGGG GCGGNCCNGNCN ]
[-] EMBL AU069196 [ GTCAT CTAATT AGTGACG C GCATGAATGGATTAACGAGATT CCC ACTGTCCCTGTCTACTATCC AGCGAAACCACAG CNAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGGATAAGTGGG ANCCTCGGGCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAGTCGG ANANG GGCCTGGCCCCTCCTTTTGG C TNCNT NA CAGGTCCCTCGGGCCGA ]
[-] EMBL AU069143 [ GTCAT CTAATT AGTGACG C GCATGAATGGATTAACGAGATT CCC ACTGTCCCTGTCTACTATCC AGCGAAACCACAG CNAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGGATAAGTGGG ANCCTCGGGCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAGTCGG ANAN GGCCTGGCCCCTCCTTTTGG C NTCNT CA CGAGTCCCTCGGGCCG ]
[+] EMBL AK107982 [ c CGAGTCCCTCGGGCCGATCCGGGCGGAAGACATTGTCAGGTGGGGAGTTTGGCTGGGGAGCGGCGGCGTCGGGGGATCGGAAGGGAACCCCGGCGGGACGTCGTCGAGAGCGGGGGCCATGGGCGCCGCCGGGAAGGCGTCCGGCATGGACGGCGGCGGCGGGGCGCGCGCGTCGTCGCGGCGCTTGAGCAGGTACTGGTCCTTCTTCTTGGCCCTGGGCTTCATCGCCGCCGCGCTGGGCATGATCTTCTCCATGAGCCTCGCCGCCGTGCTGGCCGCGCTGCCCTTCCGGCGGCGGCCGCCGGGATTCTCCGCCGCCTTCTTGCGGCCCTTCGCCGGACGACCTGCAAACGCATCGTAGCCACACATCAAGACCAAGTCAACGCAAATGGTTTTCCATTTTTATATATATGAAATATAAAACAACAATAAACTAATTTAAATATTGTGATTGAGCTAGTGGAAATTATATCA]
consensusID : consensus_12143#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 352 fasta sequence
[GTCATCTAATTAGTGACGCGCATGAATGGATTAAACGAGATTCCCNACTGTCCCTGTCTACTATCCAGCGAAACCCACAGCNAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGGATAAGTGGGACCCTCGGGCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAGTCGGAAACGGGCCTGGCCCCTCCTTTTGGCNTNCATNACNNGTCCCTCGGGCCGATCCGGGCGGAAGACATTGTCAGGTGGGGAGTTTGGCTGGGGCGGCACATCTGTTAA]
[-] EMBL OSC195 [GTCATCTAATTAGTGACGCGCATGAATGGATTAAACGAGATTCCCNACTGTCCCTGTCTACTATCCAGCGAAACCCACAGCNAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGGATAAGTGGGACCCTCGGGCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAGTCGGAAACGGGCCTGGCCCCTCCTTTTGGCNTNCATNACNNGTCCCTCGGGCCGATCCGGGCGGAAGACATTGTCAGGTGGGGAGTTTGGCTGGGGCGGCACATCTGTTAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12143#0 ATGTNATTTCTTGCCAAGTGCTCTGAATGTCAAAATGAAAAAATTCAACCCAAGCGCGGG 60
consensus_12143#1 ------------------------------------------------------------
consensus_12143#0 TAAACGGCGGGAAGTAACTATGACTCTCTTAAGGTAGCNAAATGCCTCGTCATCTAATTA 120
consensus_12143#1 ------------------------------------------------GTCATCTAATTA 12
************
consensus_12143#0 GTGACGCGCATGAATGGATTAA-CGAGATTCCCA-CTGTCCCTGTCTACTATCCAGCGAA 178
consensus_12143#1 GTGACGCGCATGAATGGATTAAACGAGATTCCCNACTGTCCCTGTCTACTATCCAGCGAA 72
********************** ********** *************************
consensus_12143#0 ACC-ACAGCNAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACCCTGTTGAGCT 237
consensus_12143#1 ACCCACAGCNAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACCCTGTTGAGCT 132
*** ********************************************************
consensus_12143#0 TGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGGATAAGTGGGACCCTCGGG 297
consensus_12143#1 TGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGGATAAGTGGGACCCTCGGG 192
************************************************************
consensus_12143#0 CGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAGTCGGANANGGG 357
consensus_12143#1 CGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAGTCGGAAACGGG 252
****************************************************** * ***
consensus_12143#0 CCTGGCCCCTCCTTTTGGCTNCN-TNACGAGTCCCTCGGGCCGATCCGGGCGGAAGACAT 416
consensus_12143#1 CCTGGCCCCTCCTTTTGGCNTNCATNACNNGTCCCTCGGGCCGATCCGGGCGGAAGACAT 312
******************* **** ******************************
consensus_12143#0 TGTCAGGTGGGGAGTTTGGCTAGGGGCGGNCCNGNCNGGGGATCGGAAGGGAACCCCGGC 476
consensus_12143#1 TGTCAGGTGGGGAGTTTGGCT-GGGGCGGCACA-TCTGTTAA------------------ 352
********************* ******* * * * *
consensus_12143#0 GGGACGTCGTCGAGAGCGGGGGCCATGGGCGCCGCCGGGAAGGCGTCCGGCATGGACGGC 536
consensus_12143#1 ------------------------------------------------------------
consensus_12143#0 GGCGGCGGGGCGCGCGCGTCGTCGCGGCGCTTGAGCAGGTACTGGTCCTTCTTCTTGGCC 596
consensus_12143#1 ------------------------------------------------------------
consensus_12143#0 CTGGGCTTCATCGCCGCCGCGCTGGGCATGATCTTCTCCATGAGCCTCGCCGCCGTGCTG 656
consensus_12143#1 ------------------------------------------------------------
consensus_12143#0 GCCGCGCTGCCCTTCCGGCGGCGGCCGCCGGGATTCTCCGCCGCCTTCTTGCGGCCCTTC 716
consensus_12143#1 ------------------------------------------------------------
consensus_12143#0 GCCGGACGACCTGCAAACGCATCGTAGCCACACATCAAGACCAAGTCAACGCAAATGGTT 776
consensus_12143#1 ------------------------------------------------------------
consensus_12143#0 TTCCATTTTTATATATATGAAATATAAAACAACAATAAACTAATTTAAATATTGTGATTG 836
consensus_12143#1 ------------------------------------------------------------
consensus_12143#0 AGCTAGTGGAAATTATATCA 856
consensus_12143#1 --------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||