cluster # 12178

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Oryza sativa
cluster # 12178 cluster # 12178 Sequences # 10 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12178#0 length = 2203 sequences # 9

consensus_12178#1 length = 149 sequences # 1

consensusID : consensus_12178#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 2203
fasta sequence

                              [GTTTTGTAGCGAGCTCGGCGAGATGAATGCCAACCGAGAGAGGCATTCACCAACGAGCAAGAGGGNAGTGGATTGGTTGGTTAAAGCTCCGCATCTTGGCTGGAAATCTCGCTCTCTNCTCTGCGGTGGGTGGCCGGAGAAGTCGCCGCCGGTGAGGCATGGGGATGGAGGTGGCGGCGGCGCGGCTGGGGCCTCTGTACACGACCTCCGACTACGCGTCGGTGGTGTCCATCAACCTGTTCGTCGCGCTGCTCTGCGCCTGCATCGTCCTCGGCCACCTCCTCGAGGAGAATCGCTGGGTCAATGAGTCCATCACCGCGCTCATCATCGGGCTCTGCACCGGCGTGGTGATCTTGCTGATGACCAAAGGGAAGAGCTCGCACTTATTCGTCTTCAGTGAGGATCTCTTTTTCATCTACCTCCTCCCTCCGATCATCTTCAATGCAGGTTTTCAGGTAAAGAAAAAGCAATTCTTCCGGAATTTCATGACGATCACATTATTTGGAGCCGTCGGGACAATGATATCCTTTTTCACAATATCTATTGCTGCCATTGCAATATTCAGCAGAATGAACATTGGAACGCTGGATGTAGGAGATTTTCTTGCAATTCGAGCCATCTTCCCTGCGACAGATTCTGTCTGCACATTGCAGGTCCTCAATCAGGATGAGACACCCTTTTTGTACAGTCTGGTATTCGGTGAAGGTGTTGTGAACGATGCTACATCAATTGTGCTTTTCAACGCACTACAGAACTTTGATCTTGTCCACATAGATGCGGCTGTCGTTCTGAAATTCTTGGGGAACTTCTTTTATTTATTTTTGTCGAGCACCTTCCTTGGAGTATTTGCTGGATTGCTCAGTGCATACATAATCAAGAAGCTATACATTGGAAGGCATTCTACTGACCGTGAGGTTGCCCTTATGATGCTCATGGCTTACCTTTCATATATGCTGGCTGAGTTGCTAGATTTGAGCGGCATTCTCACCGTATTCTTCTGTGGTATTGTAATGTCACATTACACTTGGCATAACGTCACAGAGAGTTCAAGAGTTACAACAAAGCACGCATTTGCAACTCTGTCCTTCATTGCTGAGACTTTTCTCTTCCTGTATGTTGGGATGGATGCATTGGATATTGAAAAATGGGAGTTTGCCAGTGACAGACCTGGCAAATCCATTGGGATAAGCTCAATTTTGCTA-GGATTGGTT-CTGATTGGAAGAGCTGCTTTTG-TATTCCCGCTGTCGTTCTTGTCGAACCTAACAAAGAAGGCACCGAATGAAAAAATAACCTGGAGACAGCAAGTTGTAATATGGTGGGCTGGGCTGATGAGAGGAGCTGTGTCGATTGCTCTTGCTTACAATAAGTTTACAAGATCTGGCCATACTCAGCTGCACGGCAATGCAATAATGATCACCAGCACCATCACTGTCGTTCTTTTTAGCACTATGGTATTTGGGATGATGACAAAGCCATTGATCAGGCTGCTGCTACCGGCCTCAGGCCATCCTGTCACCTCTGAGCCTTCATCACCAAAGTCCCTGCATTCT-CCTCTCCTGACAAGCATGCAAGGTTCTGACCTCGAGAGTACAACCAACATTGTGAGGCCTTCCAGCCTCCGGATGCTCCTCACCAAGCCGACCCACACTGTCCACTACTACTGGCGCAAGTTCGACGACGCGCTGATGCGACCGATGTTTGGCGGGCGCGGGTTCGTGCCCTTCTCCCCTGGATCACCAACCGAGCAGAGCCATGGAGGAA---GATGAACAGTGCAAAGAAATGAGAATGGAATGGTTGATGAGGAGAATACATGTAAAATGTGACAGCAAAAGAGAGAAGGCAAGTTTTGGGTTTGTAGAGTTTGGCTGCTGCTAATGAGTTGTTGATAGTGCCTATATTCTTCAGAACTTCAGATGGTGCCTCACCAAGGCCTAAGAGCCAGGAGGACCTTCTGATAATGGTTCGGGATGATTGGTTTGTTCTGTCAGGATGAACCCTAGTGAGTGACACAGGGTGATGTGCTCCGACAACCTGTAAATTTTGTAGATTAACAGCCCCATTTGTACCTGTCTACCATCTTTAGTTGGCGGGTGTTCTTTCCTAGTTGCCACCCTGCATGTAAAATGAAATTCTCCGCCAAAATAGATTTGTGTGTATAATAATTTTGCTTGGTTGATATAATGGTATGGCATG------AAAAAAAAAA]

[+] EMBL C27230               [GTTTTGTAGCGAGCTCGGCGAGATGAATGCCAACCGAGAGAGGCATTCACCAACGAGCAAGAGGGNAGTGGATTGGTTGGTTAAAGCTCCGCATCTTGGCTGGAAATCTCGCTCTCTNCTCTGCGGTGGGTGGCCGGAGAAGTCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AY324877             [                                                                                                         ATCTCGCTCTCTTCTCTGCGGTGGGTGGCCGGGGAAGTCGCCGCCGGTGAGGCATGGGGATGGAGGTGGCGGCGGCGCGGCTGGGGCCTCTGTACACGACCTCCGACTACGCGTCGGTGGTGTCCATCAACCTGTTCGTCGCGCTGCTCTGCGCCTGCATCGTCCTCGGCCACCTCCTCGAGGAGAATCGCTGGGTCAATGAGTCCATCACCGCGCTCATCATCGGGCTCTGCACCGGCGTGGTGATCTTGCTGATGACCAAAGGGAAGAGCTCGCACTTATTCGTCTTCAGTGAGGATCTCTTTTTCATCTACCTCCTCCCTCCGATCATCTTCAATGCAGGTTTTCAGGTAAAGAAAAAGCAATTCTTCCGGAATTTCATGACGATCACATTATTTGGAGCCGTCGGGACAATGATATCCTTTTTCACAATATCTATTGCTGCCATTGCAATATTCAGCAGAATGAACATTGGAACGCTGGATGTAGGAGATTTTCTTGCAATTCGAGCCATCTTCCCTGCGACAGATTCTGTCTGCACATTGCAGGTCCTCAATCAGGATGAGACACCCTTTTTGTACAGTCTGGTATTCGGTGAAGGTGTTGTGAACGATGCTACATCAATTGTGCTTTTCAACGCACTACAGAACTTTGATCTTGTCCACATAGATGCGGCTGTCGTTCTGAAATTCTTGGGGAACTTCTTTTATTTATTTTTGTCGAGCACCTTCCTTGGAGTATTTGCTGGATTGCTCAGTGCATACATAATCAAGAAGCTATACATTGGAAGGCATTCTACTGACCGTGAGGTTGCCCTTATGATGCTCATGGCTTACCTTTCATATATGCTGGCTGAGTTGCTAGATTTGAGCGGCATTCTCACCGTATTCTTCTGTGGTATTGTAATGTCACATTACACTTGGCATAACGTCACAGAGAGTTCAAGAGTTACAACAAAGCACGCATTTGCAACTCTGTCCTTCATTGCTGAGACTTTTCTCTTCCTGTATGTTGGGATGGATGCATTGGATATTGAAAAATGGGAGTTTGCCAGTGACAGACCTGGCAAATCCATTGGGATAAGCTCAATTTTGCTA GGATTGGTT CTGATTGGAAGAGCTGCTTTTG TATTCCCGCTGTCGTTCTTGTCGAACCTAACAAAGAAGGCACCGAATGAAAAAAGAACCTGGAGACAGCAAGTTGTAATATGGTGGGCTGGGCTGATGAGAGGAGCTGTGTCGATTGCTCTTGCTTACAATAAGTTTACAAGATCTGGCCATACTCAGCTGCACGGCAATGCAATAATGATCACCAGCACCATCACTGTCGTTCTTTGGAGCACTATGGTATTTGGGATGATGACAAAGCCATTGATCAGGCTGCTGCTACCGGCCTCAGGCCATCCTGTCACCTCTGAGCCTTCATCACCAAAGTCCCTGCATTCT CCTCTCCTGACAAGGATGCAAGGTTCTGACCTCGAGAGTACAACCAACATTGTGAGGCCTTCCAGCCTCCGGATGCTCCTCACCAAGCCGACCCACACTGTCCACTACTACTGGCGCAAGTTCGACGACGCGCTGATGCGACCGATGTTTGGCGGGCGCGGGTTCGTGCCCTTCTCCCCTGGATCACCAACCGAGCAGAGCCATGGAGGAAGATGATGAACAGTGCAAAGAAATGAGAATGGAATGGTTGATGAGGAGAATACCTGTAAAATGTGACAGCAAAAGAGAGAAGGC                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AK064004             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CATTGCAGGTCCTCAATCAGGATGAGACACCCTTTTTGTACAGTCTGGTATTCGGTGAAGGTGTTGTGAACGATGCTACATCAATTGTGCTTTTCAACGCACTACAGAACTTTGATCTTGTCCACATAGATGCGGCTGTCGTTCTGAAATTCTTGGGGAACTTCTTTTATTTATTTTTGTCGAGCACCTTCCTTGGAGTATTTGCTGGATTGCTCAGTGCATACATAATCAAGAAGCTATACATTGGAAGGCATTCTACTGACCGTGAGGTTGCCCTTATGATGCTCATGGCTTACCTTTCATATATGCTGGCTGAGTTGCTAGATTTGAGCGGCATTCTCACCGTATTCTTCTGTGGTATTGTAATGTCACATTACACTTGGCATAACGTCACAGAGAGTTCAAGAGTTACAACAAAGCACGCATTTGCAACTCTGTCCTTCATTGCTGAGACTTTTCTCTTCCTGTATGTTGGGATGGATGCATTGGATATTGAAAAATGGGAGTTTGCCAGTGACAGACCTGGCAAATCCATTGGGATAAGCTCAATTTTGCTA GGATTGGTT CTGATTGGAAGAGCTGCTTTTG TATTCCCGCTGTCGTTCTTGTCGAACCTAACAAAGAAGGCACCGAATGAAAAAATAACCTGGAGACAGCAAGTTGTAATATGGTGGGCTGGGCTGATGAGAGGAGCTGTGTCGATTGCTCTTGCTTACAATAAGTTTACAAGATCTGGCCATACTCAGCTGCACGGCAATGCAATAATGATCACCAGCACCATCACTGTCGTTCTTTTTAGCACTATGGTATTTGGGATGATGACAAAGCCATTGATCAGGCTGCTGCTACCGGCCTCAGGCCATCCTGTCACCTCTGAGCCTTCATCACCAAAGTCCCTGCATTCT CCTCTCCTGACAAGCATGCAAGGTTCTGACCTCGAGAGTACAACCAACATTGTGAGGCCTTCCAGCCTCCGGATGCTCCTCACCAAGCCGACCCACACTGTCCACTACTACTGGCGCAAGTTCGACGACGCGCTGATGCGACCGATGTTTGGCGGGCGCGGGTTCGTGCCCTTCTCCCCTGGATCACCAACCGAGCAGAGCCATGGAGGAA   GATGAACAGTGCAAAGAAATGAGAATGGAATGGTTGATGAGGAGAATACATGTAAAATGTGACAGCAAAAGAGAGAAGGCAAGTTTTGGGTTTGTAGAGTTTGGCTGCTGCTAATGAGTTGTTGATAGTGCCTATATTCTTCAGAACTTCAGATGGTGCCTCACCAAGGCCTAAGAGCCAGGAGGACCTTCTGATAATGGTTCGGGATGATTGGTTTGTTCTGTCAGGATGAACCCTAGTGAGTGACACAGGGTGATGTGCTCCGACAACCTGTAAATTTTGTAGATTAACAGCCCCATTTGTACCTGTCTACCATCTTTAGTTGGCGGGTGTTCTTTCCTAGTTGCCACCCTGCATGTAAAATGAAATTCTCCGCCAAAATAGATTTGTGTGTATAATAATTTTGCTTGGTTGATATAATGGTATGG                    ]
[+] EMBL AB021878             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CATTGCAGGTCCTCAATCAGGATGAGACACCCTTTTTGTACAGTCTGGTATTCGGTGAAGGTGTTGTGAACGATGCTACATCAATTGTGCTTTTCAACGCACTACAGAACTTTGATCTTGTCCACATAGATGCGGCTGTCGTTCTGAAATTCTTGGGGAACTTCTTTTATTTATTTTTGTCGAGCACCTTCCTTGGAGTATTTGCTGGATTGCTCAGTGCATACATAATCAAGAAGCTATACATTGGAAGGCATTCTACTGACCGTGAGGTTGCCCTTATGATGCTCATGGCTTACCTTTCATATATGCTGGCTGAGTTGCTAGATTTGAGCGGCATTCTCACCGTATTCTTCTGTGGTATTGTAATGTCACATTACACTTGGCATAACGTCACAGAGAGTTCAAGAGTTACAACAAAGCACGCATTTGCAACTCTGTCCTTCATTGCTGAGACTTTTCTCTTCCTGTATGTTGGGATGGATGCATTGGATATTGAAAAATGGGAGTTTGCCAGTGACAGACCTGGCAAATCCATTGGGATAAGCTCAATTTTGCTA GGATTGGTT CTGATTGGAAGAGCTGCTTTTG TATTCCCGCTGTCGTTCTTGTCGAACCTAACAAAGAAGGCACCGAATGAAAAAATAACCTGGAGACAGCAAGTTGTAATATGGTGGGCTGGGCTGATGAGAGGAGCTGTGTCGATTGCTCTTGCTTACAATAAGTTTACAAGATCTGGCCATACTCAGCTGCACGGCAATGCAATAATGATCACCAGCACCATCACTGTCGTTCTTTTTAGCACTATGGTATTTGGGATGATGACAAAGCCATTGATCAGGCTGCTGCTACCGGCCTCAGGCCATCCTGTCACCTCTGAGCCTTCATCACCAAAGTCCCTGCATTCT CCTCTCCTGACAAGCATGCAAGGTTCTGACCTCGAGAGTACAACCAACATTGTGAGGCCTTCCAGCCTCCGGATGCTCCTCACCAAGCCGACCCACACTGTCCACTACTACTGGCGCAAGTTCGACGACGCGCTGATGCGACCGATGTTTGGCGGGCGCGGGTTCGTGCCCTTCTCCCCTGGATCACCAACCGAGCAGAGCCATGGAGGAA   GATGAACAGTGCAAAGAAATGAGAATGGAATGGTTGATGAGGAGAATACATGTAAAATGTGACAGCAAAAGAGAGAAGGCAAGTTTTGGGTTTGTAGAGTTTGGCTGCTGCTAATGAGTTGTTGATAGTGCCTATATTCTTCAGAACTTCAGATGGTGCCTCACCAAGGCCTAAGAGCCAGGAGGACCTTCTGATAATGGTTCGGGATGATTGGTTTGTTCTGTCAGGATGAACCCTAGTGAGTGACACAGGGTGATGTGCTCCGACAACCTGTAAATTTTGTAGATTAACAGCCCCATTTGTACCTGTCTACCATCTTTAGTTGGCGGGTGTTCTTTCCTAGTTGCCACCCTGCATGTAAAATGAAATTCTCCGCCAAAATAGATTTGTGTGTATAATAATTT                                            ]
[+] EMBL AK099332             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CATTGCAGGTCCTCAATCAGGATGAGACACCCTTTTTGTACAGTCTGGTATTCGGTGAAGGTGTTGTGAACGATGCTACATCAATTGTGCTTTTCAACGCACTACAGAACTTTGATCTTGTCCACATAGATGCGGCTGTCGTTCTGAAATTCTTGGGGAACTTCTTTTATTTATTTTTGTCGAGCACCTTCCTTGGAGTATTTGCTGGATTGCTCAGTGCATACATAATCAAGAAGCTATACATTGGAAGGCATTCTACTGACCGTGAGGTTGCCCTTATGATGCTCATGGCTTACCTTTCATATATGCTGGCTGAGTTGCTAGATTTGAGCGGCATTCTCACCGTATTCTTCTGTGGTATTGTAATGTCACATTACACTTGGCATAACGTCACAGAGAGTTCAAGAGTTACAACAAAGCACGCATTTGCAACTCTGTCCTTCATTGCTGAGACTTTTCTCTTCCTGTATGTTGGGATGGATGCATTGGATATTGAAAAATGGGAGTTTGCCAGTGACAGACCTGGCAAATCCATTGGGATAAGCTCAATTTTGCTA GGATTGGTT CTGATTGGAAGAGCTGCTTTTG TATTCCCGCTGTCGTTCTTGTCGAACCTAACAAAGAAGGCACCGAATGAAAAAATAACCTGGAGACAGCAAGTTGTAATATGGTGGGCTGGGCTGATGAGAGGAGCTGTGTCGATTGCTCTTGCTTACAATAAGTTTACAAGATCTGGCCATACTCAGCTGCACGGCAATGCAATAATGATCACCAGCACCATCACTGTCGTTCTTTTTAGCACTACGGTATTTGGGATGATGACAAAGCCATTGATCAGGCTGCTGCTACCGGCCTCAGGCCATCCTGTCACCTCTGAGCCTTCATCACCAAAGTCCCTGCATTCT CCTCTCCTGACAAGCATGCAAGGTTCTGACCTCGAGAGTACAACCAACATTGTGAGGCCTTCCAGCCTCCGGATGCTCCTCACCAAGCCGACCCACACTGTCCACTACTACTGGCGCAAGTTCGACGACGCGCTGATGCGACCGATGTTTGGCGGGCGCGGGTTCGTGCCCTTCTCCCCTGGATCACCAACCGAGCAGAGCCATGGAGGAA   GATGAACAGTGCAAAGAAATGAGAATGGAATGGTTGATGAGGAGAATACATGTAAAATGTGACAGCAAAAGAGAGAAGGCAAGTTTTGGGTTTGTAGAGTTTGGCTGCTGCTAATGAGTTGTTGATAGTGCCTATATTCTTCAGAACTTCAGATGGTGCCTCACCAAGGCCTAAGAGCCAGGAGGACCTTCTGATAATGGTTCGGGATGATTGGTTTGTTCTGTCAGGATGAACCCTAGTGAGTGACACAGGGTGATGTGCTCCGACAACCTGTAAATTTTGTAGATTAACAGCCCCATTTGTACCTGTCTACCATCTTTAGTTGGCGGGTGTTCTTTCCTAGTTGCCACCCTGCATGTAAAATGAAATTCTCCGCCAAAATAGAT                                                              ]
[+] EMBL CA767092             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ATTGCAGGTCCTCAATCAGGATGAGACACCCTTTTTGTACAGTCTGGTATTCGGTGAAGGTGTTGTGAACGATGCTACATCAATTGTGCTTTTCAACGCACTACAGAACTTTGATCTTGTCCACATAGATGCGGCTGTCGTTCTGAAATTCTTGGGGAACTTCTTTTATTTATTTTTGTCGAGCACCTTCCTTGGAGTATTTGCTGGATTGCTCAGTGCATACATAATCAAGAAGCTATACATTGGAAGGCATTCTACTGACCGTGAGGTTGCCCTTATGATGCTCATGGCTTACCTTTCATATATGCTGGCTGAGTTGCTAGATTTGAGCGGCATTCTCACCGTATTCTTCTGTGGTATTGTAATGTCACATTACACTTGGCATAACGTCACAGAGAGTTCAAGAGTTACAACAAAGCACGCATTTGCAACTCTGTCCTTCATTGCTGAGACTTTTCTCTTCCTGTATGTTGGGATGGATGCATTGGATATTGAAGAATGGGAGTTTGCCAGTGACAGACCTGGCAAATCCATTGGGATAAGCTCAATTTTGCTA GGATTGGTT CTGCTTGGAAGAGCTGCTTTTG TATTCCCGCTGTCGTTCTTGTCGAACCTAACAAAGAAGGCACCGAATGAAAAAATAACCTGGAGACAGCAAGNTGTAATATGGTGGGCTGGGCTGATGAGAGGAGCTGTGTCGATTGCTCTTGCTTACAATAAGNTTACAAGATCTGGCCATACTCAGCTTCACGGCAATGCAATAATGATCACCAGCACCATCACTGNCGNTCTTTTTAGCACTATGGTATTTGGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL C91832               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ATACATTGGAAGGCATTCTACTGACCGTGAGGTTGCCCTTATGATGCTCATGGCTTACCTTTCATATATGCTGGCTGAGTTGCTAGATTTGAGCGGCATTCTCACCGTATTCTTCTGTGGTATTGTAATGTCACATTACACTTGGCATAACGTCACAGAGAGTTCAAGAGTTACAACAAAGCACGCATTTGCAACTCTGTCCTTCATTGCTGAGACTTTTCTCTTCCTGTATGTTGGGATGGATGCATTGGATATTGAAAAATGGGAGNTTNCCAGTGACAGACCTGGNAAATCCATTNGGGTAAGCTCAATTTTGCTAGGGATTGGTTCCTGATTGGAAGNGCTGCTTTTGNAATTCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AU094795             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CTGAGCCTTCATCACCAAAGTCCCTGCATTCTCCCTCTCCTGACAAGCATGCAAGGTTCTGACCTCGAGAGTACAACCAACATTGTGAGGCCTTCCAGCCTCCGGATGCTCCTCACCAAGCCGACCCACACTGTCCACTACTACTGGCGCAAGTTCGACGACGCGCTGATGCGACCGATGTTTGGCGGGCGCGGGTTCGTGCCCTTCTCCCCTGGATCACCAACCGAGCAGAGCCATGGAGGAA   GATGAACAGTGCAAAGAAATGAGAATGGAATGGTTGATGAGGAGAATACATGTAAAATGTGACAGCAAAAGAGAGAAGGCAAGTTTTGGGTTTGTAGAGTTTGGCTGCTGCTAATGAGTTGTTGATAGTGCCTATATTCTTCAGAACTTCAGATGGTGCCTCACCAAGGCCTAAGAGCCAGGAGGACCTTCTGATAATGGTTCGGGATGATTGGTTTGTTCTGTCAGGATGAACCCTAGTGAGTGACACAGGGTGATGTGCTCCGACAACCTGTAAATTTTGTAGATTAACAGCCCCATTTGTACCTGTCTACCATCTTTAGTTGGCGGGTGTTCTTTCCTAGTTGCCACCCTGCATGTAAAATGAAATTCTCCGCCAAAATAGATTTGTGTGTATAATAATTTTGCTTGGTTGATATAATGGTATGGCATGGTTTGCAAAAAAAAAA]
[-] EMBL CB640696             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TGGAGGAA   GATGAACAGTGCAAAGAAATGAGAATGGAATGGTTGATGAGGAGAATACATGTAAAATGTGACAGCAAAAGAGAGAAGGCAAGTTTTGGGTTTGTAGAGTTTGGCTGCTGCTAATGAGTTGTTGATAGTGCCTATATTCTTCAGAACTTCAGATGGTGCCTCACCAAGGCCTAAGAGCCAGGAGGACCTTCTGATAATGGTTCGGGATGATTGGTTTGTTCTGGCAGGATGAACCCTAGTGAGTGACACAGGGTGATGTGCTCCGACAACCTGTAAATTTTGTAGATTAACAGCCCCATTTGTACCTGTCTACCATCTTTAGTTGGCGGGTGTTCTTTCCTAGTTGCCACCCTGCATGTAAAATGAAATTCTCCGCCAAAATAGATTTGTGTGTATAATAATTTTGCTTGGTTGATATAATGGTATGGCATG                ]




>consensus_12178#0
GTTTTGTAGCGAGCTCGGCGAGATGAATGCCAACCGAGAGAGGCATTCACCAACGAGCAA
GAGGGNAGTGGATTGGTTGGTTAAAGCTCCGCATCTTGGCTGGAAATCTCGCTCTCTNCT
CTGCGGTGGGTGGCCGGAGAAGTCGCCGCCGGTGAGGCATGGGGATGGAGGTGGCGGCGG
CGCGGCTGGGGCCTCTGTACACGACCTCCGACTACGCGTCGGTGGTGTCCATCAACCTGT
TCGTCGCGCTGCTCTGCGCCTGCATCGTCCTCGGCCACCTCCTCGAGGAGAATCGCTGGG
TCAATGAGTCCATCACCGCGCTCATCATCGGGCTCTGCACCGGCGTGGTGATCTTGCTGA
TGACCAAAGGGAAGAGCTCGCACTTATTCGTCTTCAGTGAGGATCTCTTTTTCATCTACC
TCCTCCCTCCGATCATCTTCAATGCAGGTTTTCAGGTAAAGAAAAAGCAATTCTTCCGGA
ATTTCATGACGATCACATTATTTGGAGCCGTCGGGACAATGATATCCTTTTTCACAATAT
CTATTGCTGCCATTGCAATATTCAGCAGAATGAACATTGGAACGCTGGATGTAGGAGATT
TTCTTGCAATTCGAGCCATCTTCCCTGCGACAGATTCTGTCTGCACATTGCAGGTCCTCA
ATCAGGATGAGACACCCTTTTTGTACAGTCTGGTATTCGGTGAAGGTGTTGTGAACGATG
CTACATCAATTGTGCTTTTCAACGCACTACAGAACTTTGATCTTGTCCACATAGATGCGG
CTGTCGTTCTGAAATTCTTGGGGAACTTCTTTTATTTATTTTTGTCGAGCACCTTCCTTG
GAGTATTTGCTGGATTGCTCAGTGCATACATAATCAAGAAGCTATACATTGGAAGGCATT
CTACTGACCGTGAGGTTGCCCTTATGATGCTCATGGCTTACCTTTCATATATGCTGGCTG
AGTTGCTAGATTTGAGCGGCATTCTCACCGTATTCTTCTGTGGTATTGTAATGTCACATT
ACACTTGGCATAACGTCACAGAGAGTTCAAGAGTTACAACAAAGCACGCATTTGCAACTC
TGTCCTTCATTGCTGAGACTTTTCTCTTCCTGTATGTTGGGATGGATGCATTGGATATTG
AAAAATGGGAGTTTGCCAGTGACAGACCTGGCAAATCCATTGGGATAAGCTCAATTTTGC
TAGGATTGGTTCTGATTGGAAGAGCTGCTTTTGTATTCCCGCTGTCGTTCTTGTCGAACC
TAACAAAGAAGGCACCGAATGAAAAAATAACCTGGAGACAGCAAGTTGTAATATGGTGGG
CTGGGCTGATGAGAGGAGCTGTGTCGATTGCTCTTGCTTACAATAAGTTTACAAGATCTG
GCCATACTCAGCTGCACGGCAATGCAATAATGATCACCAGCACCATCACTGTCGTTCTTT
TTAGCACTATGGTATTTGGGATGATGACAAAGCCATTGATCAGGCTGCTGCTACCGGCCT
CAGGCCATCCTGTCACCTCTGAGCCTTCATCACCAAAGTCCCTGCATTCTCCTCTCCTGA
CAAGCATGCAAGGTTCTGACCTCGAGAGTACAACCAACATTGTGAGGCCTTCCAGCCTCC
GGATGCTCCTCACCAAGCCGACCCACACTGTCCACTACTACTGGCGCAAGTTCGACGACG
CGCTGATGCGACCGATGTTTGGCGGGCGCGGGTTCGTGCCCTTCTCCCCTGGATCACCAA
CCGAGCAGAGCCATGGAGGAAGATGAACAGTGCAAAGAAATGAGAATGGAATGGTTGATG
AGGAGAATACATGTAAAATGTGACAGCAAAAGAGAGAAGGCAAGTTTTGGGTTTGTAGAG
TTTGGCTGCTGCTAATGAGTTGTTGATAGTGCCTATATTCTTCAGAACTTCAGATGGTGC
CTCACCAAGGCCTAAGAGCCAGGAGGACCTTCTGATAATGGTTCGGGATGATTGGTTTGT
TCTGTCAGGATGAACCCTAGTGAGTGACACAGGGTGATGTGCTCCGACAACCTGTAAATT
TTGTAGATTAACAGCCCCATTTGTACCTGTCTACCATCTTTAGTTGGCGGGTGTTCTTTC
CTAGTTGCCACCCTGCATGTAAAATGAAATTCTCCGCCAAAATAGATTTGTGTGTATAAT
AATTTTGCTTGGTTGATATAATGGTATGGCATGAAAAAAAAAA

consensusID : consensus_12178#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 149
fasta sequence

                              [TACCTGTCTACCATCTTTAGTTGGCGGGTGTTCTTTCCTAGTTGCCACCCTGCATGTAAAATGAAATTCTCCGCCAAAATAGATTTGTGTGTATAATAATTTTGCTTGGTTGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAA]

[+] EMBL CF312425             [TACCTGTCTACCATCTTTAGTTGGCGGGTGTTCTTTCCTAGTTGCCACCCTGCATGTAAAATGAAATTCTCCGCCAAAATAGATTTGTGTGTATAATAATTTTGCTTGGTTGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAA]




>consensus_12178#1
TACCTGTCTACCATCTTTAGTTGGCGGGTGTTCTTTCCTAGTTGCCACCCTGCATGTAAA
ATGAAATTCTCCGCCAAAATAGATTTGTGTGTATAATAATTTTGCTTGGTTGATAAAAAA
AAAAAAAAAAAAAAAAAAAAAAACAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12178#0      GTTTTGTAGCGAGCTCGGCGAGATGAATGCCAACCGAGAGAGGCATTCACCAACGAGCAA 60
consensus_12178#1      ------------------------------------------------------------
                                                                                   

consensus_12178#0      GAGGGNAGTGGATTGGTTGGTTAAAGCTCCGCATCTTGGCTGGAAATCTCGCTCTCTNCT 120
consensus_12178#1      ------------------------------------------------------------
                                                                                   

consensus_12178#0      CTGCGGTGGGTGGCCGGAGAAGTCGCCGCCGGTGAGGCATGGGGATGGAGGTGGCGGCGG 180
consensus_12178#1      ------------------------------------------------------------
                                                                                   

consensus_12178#0      CGCGGCTGGGGCCTCTGTACACGACCTCCGACTACGCGTCGGTGGTGTCCATCAACCTGT 240
consensus_12178#1      ------------------------------------------------------------
                                                                                   

consensus_12178#0      TCGTCGCGCTGCTCTGCGCCTGCATCGTCCTCGGCCACCTCCTCGAGGAGAATCGCTGGG 300
consensus_12178#1      ------------------------------------------------------------
                                                                                   

consensus_12178#0      TCAATGAGTCCATCACCGCGCTCATCATCGGGCTCTGCACCGGCGTGGTGATCTTGCTGA 360
consensus_12178#1      ------------------------------------------------------------
                                                                                   

consensus_12178#0      TGACCAAAGGGAAGAGCTCGCACTTATTCGTCTTCAGTGAGGATCTCTTTTTCATCTACC 420
consensus_12178#1      ------------------------------------------------------------
                                                                                   

consensus_12178#0      TCCTCCCTCCGATCATCTTCAATGCAGGTTTTCAGGTAAAGAAAAAGCAATTCTTCCGGA 480
consensus_12178#1      ------------------------------------------------------------
                                                                                   

consensus_12178#0      ATTTCATGACGATCACATTATTTGGAGCCGTCGGGACAATGATATCCTTTTTCACAATAT 540
consensus_12178#1      ------------------------------------------------------------
                                                                                   

consensus_12178#0      CTATTGCTGCCATTGCAATATTCAGCAGAATGAACATTGGAACGCTGGATGTAGGAGATT 600
consensus_12178#1      ------------------------------------------------------------
                                                                                   

consensus_12178#0      TTCTTGCAATTCGAGCCATCTTCCCTGCGACAGATTCTGTCTGCACATTGCAGGTCCTCA 660
consensus_12178#1      ------------------------------------------------------------
                                                                                   

consensus_12178#0      ATCAGGATGAGACACCCTTTTTGTACAGTCTGGTATTCGGTGAAGGTGTTGTGAACGATG 720
consensus_12178#1      ------------------------------------------------------------
                                                                                   

consensus_12178#0      CTACATCAATTGTGCTTTTCAACGCACTACAGAACTTTGATCTTGTCCACATAGATGCGG 780
consensus_12178#1      ------------------------------------------------------------
                                                                                   

consensus_12178#0      CTGTCGTTCTGAAATTCTTGGGGAACTTCTTTTATTTATTTTTGTCGAGCACCTTCCTTG 840
consensus_12178#1      ------------------------------------------------------------
                                                                                   

consensus_12178#0      GAGTATTTGCTGGATTGCTCAGTGCATACATAATCAAGAAGCTATACATTGGAAGGCATT 900
consensus_12178#1      ------------------------------------------------------------
                                                                                   

consensus_12178#0      CTACTGACCGTGAGGTTGCCCTTATGATGCTCATGGCTTACCTTTCATATATGCTGGCTG 960
consensus_12178#1      ------------------------------------------------------------
                                                                                   

consensus_12178#0      AGTTGCTAGATTTGAGCGGCATTCTCACCGTATTCTTCTGTGGTATTGTAATGTCACATT 1020
consensus_12178#1      ------------------------------------------------------------
                                                                                   

consensus_12178#0      ACACTTGGCATAACGTCACAGAGAGTTCAAGAGTTACAACAAAGCACGCATTTGCAACTC 1080
consensus_12178#1      ------------------------------------------------------------
                                                                                   

consensus_12178#0      TGTCCTTCATTGCTGAGACTTTTCTCTTCCTGTATGTTGGGATGGATGCATTGGATATTG 1140
consensus_12178#1      ------------------------------------------------------------
                                                                                   

consensus_12178#0      AAAAATGGGAGTTTGCCAGTGACAGACCTGGCAAATCCATTGGGATAAGCTCAATTTTGC 1200
consensus_12178#1      ------------------------------------------------------------
                                                                                   

consensus_12178#0      TAGGATTGGTTCTGATTGGAAGAGCTGCTTTTGTATTCCCGCTGTCGTTCTTGTCGAACC 1260
consensus_12178#1      ------------------------------------------------------------
                                                                                   

consensus_12178#0      TAACAAAGAAGGCACCGAATGAAAAAATAACCTGGAGACAGCAAGTTGTAATATGGTGGG 1320
consensus_12178#1      ------------------------------------------------------------
                                                                                   

consensus_12178#0      CTGGGCTGATGAGAGGAGCTGTGTCGATTGCTCTTGCTTACAATAAGTTTACAAGATCTG 1380
consensus_12178#1      ------------------------------------------------------------
                                                                                   

consensus_12178#0      GCCATACTCAGCTGCACGGCAATGCAATAATGATCACCAGCACCATCACTGTCGTTCTTT 1440
consensus_12178#1      ------------------------------------------------------------
                                                                                   

consensus_12178#0      TTAGCACTATGGTATTTGGGATGATGACAAAGCCATTGATCAGGCTGCTGCTACCGGCCT 1500
consensus_12178#1      ------------------------------------------------------------
                                                                                   

consensus_12178#0      CAGGCCATCCTGTCACCTCTGAGCCTTCATCACCAAAGTCCCTGCATTCTCCTCTCCTGA 1560
consensus_12178#1      ------------------------------------------------------------
                                                                                   

consensus_12178#0      CAAGCATGCAAGGTTCTGACCTCGAGAGTACAACCAACATTGTGAGGCCTTCCAGCCTCC 1620
consensus_12178#1      ------------------------------------------------------------
                                                                                   

consensus_12178#0      GGATGCTCCTCACCAAGCCGACCCACACTGTCCACTACTACTGGCGCAAGTTCGACGACG 1680
consensus_12178#1      ------------------------------------------------------------
                                                                                   

consensus_12178#0      CGCTGATGCGACCGATGTTTGGCGGGCGCGGGTTCGTGCCCTTCTCCCCTGGATCACCAA 1740
consensus_12178#1      ------------------------------------------------------------
                                                                                   

consensus_12178#0      CCGAGCAGAGCCATGGAGGAAGATGAACAGTGCAAAGAAATGAGAATGGAATGGTTGATG 1800
consensus_12178#1      ------------------------------------------------------------
                                                                                   

consensus_12178#0      AGGAGAATACATGTAAAATGTGACAGCAAAAGAGAGAAGGCAAGTTTTGGGTTTGTAGAG 1860
consensus_12178#1      ------------------------------------------------------------
                                                                                   

consensus_12178#0      TTTGGCTGCTGCTAATGAGTTGTTGATAGTGCCTATATTCTTCAGAACTTCAGATGGTGC 1920
consensus_12178#1      ------------------------------------------------------------
                                                                                   

consensus_12178#0      CTCACCAAGGCCTAAGAGCCAGGAGGACCTTCTGATAATGGTTCGGGATGATTGGTTTGT 1980
consensus_12178#1      ------------------------------------------------------------
                                                                                   

consensus_12178#0      TCTGTCAGGATGAACCCTAGTGAGTGACACAGGGTGATGTGCTCCGACAACCTGTAAATT 2040
consensus_12178#1      ------------------------------------------------------------
                                                                                   

consensus_12178#0      TTGTAGATTAACAGCCCCATTTGTACCTGTCTACCATCTTTAGTTGGCGGGTGTTCTTTC 2100
consensus_12178#1      -----------------------TACCTGTCTACCATCTTTAGTTGGCGGGTGTTCTTTC 37
                                              *************************************

consensus_12178#0      CTAGTTGCCACCCTGCATGTAAAATGAAATTCTCCGCCAAAATAGATTTGTGTGTATAAT 2160
consensus_12178#1      CTAGTTGCCACCCTGCATGTAAAATGAAATTCTCCGCCAAAATAGATTTGTGTGTATAAT 97
                       ************************************************************

consensus_12178#0      AATTTTGCTTGGTTGATATAATGGTATGGCATGAAAAAAAAAA--------- 2203
consensus_12178#1      AATTTTGCTTGGTTGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAA 149
                       ****************** **    *    *  **********