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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12192#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 2647 fasta sequence
[CGCAACATTCTCATTTCTCTCTCTCGTCCCCGCCCCACCCCCACCCACCACACCACACCCCCGTCTCCGCGCGAAAATTCCCACGCCACGCGCGCTGGAAGAGAGGGAAGGCTTTTCCTCCGTTCTCCGCCCACGCGCCGTCATCGCTGCCCGCCTTTCTTCCTCCGCTTTGTTTGGGCCGGAGCGGGGGGCGCACCGGCGCCGGCGACGTCTCTCTTCCGAATCGGGAGGCGGGAGCCAGTTCATGGAATCTGGTGGAATTGATGCTCAAGTCAGAGCAATCGAGCAGCGCACAAGATTGGAGATTCCTATACGTGATTGAGATTGCAAATGTGGCGCCTGTTCAATGAGTTGTGGGATGTTCTAGGATCTGGGTTTTTCTCATCGAGGTTTCTTTAATCCAGCTCAAATCTATTTACACCTCATCCGTTTGCACCGAGATCATCTCTGTGTGTGTGGTCACCGTGAGATTAGGAGGAGATGGACGAGGAGGATTACTCGTGGGTTCGGCGGACAAGGTTCTCCCACTCCGTCGTCCGCTCCAAGTCCGGCAGGGAGCAGTTCGGTGCATTCGTCGAGCAGTTCAACCGCGGCGCGGCACGGAGGCAGAGAGGGCCCGGCTTCAGGGTTCATGCCTCCATGGCCCTCAACCTTGGAACCGAGGGCGAGGCTCCCAGCCACCACCTCGGCGAATTCCTCCGTTCCGAGGACGACAGGATCGTCGAATGCTCAGCCATCGTCGGAGACGAAGCCAGCTTCGTCGTCCTCGGACGCCAAACTGGAGCAGCACGAGAAGAGCCTCAACTTGGAACCAAGGACGAGGCTCTCGGCCACCACCTCGGCGAATTCCTCTGTTCCGTGGACGACAGGATCGTCGAATGCCCAGCCGTTGTCAGAGACAAAGACAGCTTCGTCCTCCTCGGACGCCAAACCGGAGCAGCAAGAGAAGCCTCGTGATCATCAGCCGTCGCAAGAAGTGTCCACCAAGCAGGATGATAAGGCTGAAAATGACACGAAGGCAACAGCCACATCTGGGCCTCTCGAGTTCTCCTTCCATCCTGATGAGCAAACCTTGAGGCTGCAGAGGGCGTGTTCCAGCCCTGTTCCTTTCCCAAGCAACAAGAACATGCTGGTGGCTGATGCTGCAGCACGTAGCTCATCTCTCAAGGTTGCCGGCGAGGGGCCGAAGCCGAAGCCGAAGCAGAGAGCAAGGTCCCCTCCCCTGCGTCGTGACGTTCCTGAGCTGTTCAAGGAGGCCAAATCGTCAAGCAAGAGGTTTTCCACACCGCCACCGCGCCGGAAGCCTTCGTCTCCACCGGCGCCGAGTAGGAGCCCTCCTCATGTCTTTGCCACGGCGAGAGCGCATGGCAAGCCGAAGCATAAGAAGGATTCCTCTGCCAATGGAAGGGCGAAGGTCGCCGCACTTGAGGTGCTCGAGAAGTGGACCGTCGATCGCTCGCAGCTGCTCATCGGGCACAGGTTCGCCTCCGGGGCGCACAGTCGCTTGTTCCATGGAATCTACAAGGAGCAGCCTGTCGCCGTGAAGTTCATCAGGCAACCTGAGGATGAGGAAGATGCAGAGCTGGCCGCGCAGCTTGAAAAGCAGTTCAACACGGAGGTCACCACACTGTCCCGCCTGAACCATCCTAATGTCATTAAGCTGATTGGAGCATGCAGTAGCCCACCTGTCTTTTGTGTCATCACCGAGTTTCTTTCTGGGGGTTCTTTAAGAACATTTCTGCACAAGCAGGAGCACAAATCTCTACCTTTAGAGAAGATCATTTCAATTGGTTTGGATATTGCAAATGGCATTGGATATATTCACTCACAAGGAGTTGTTCATCGTGATGTGAAACCAGAGAACATCATATTTGATTCAGAATTTTGTGCGAAGATTGTTGATTTTGGAATATCTTGTGAAGAAGCAGAGTGTGACCCTCTGGCGAATGACACTGGGACTTTCAGATGGATGGCTCCAGAGATGATGAAGCACAAACCTTATGGTCGAAAGGTTGATGTTTACAGCTTTGGCCTTATCTTATGGGAAATGTTTACCGGGTCGGTACCTTATGAAGACTTGAATCCATTCCAGGCAGCTTTTGCTGTTTTTGATAAGAA-CGAGAGGCCGGTCATCCCCAGTAGCTGCCCTGCGCCACTACGGCTTCTAATTGAGCAATGTTGGGCCTCGCAACCAGATAAAAGGCCTGAATTCTGGCAAATAGTACAGATATTGGACAAGTTTAAGGCGGTTCTAGATAAAGATGGAACA-CTGGACAATATGCCATGCTTAAACTTGCAA-GGAACTCATGATCACAAGAATTGGCTAGCTCACTGGGTCCAGAAGCTCAAACATACCCATCA-TGATCTCTCTGGACCTCCGCCACCAAAATTGCTGTAGTTAATCCTCTCCCTTCCAAACTATGCTAATCGGATAGGCCTCAGAATGTAACTGTCAATTTTTTGCTTTGTTATATAGGAAAAATATATGTGTTTGTCTTCGCGATTTTATAGCACAGTAAACATTTGCTTAGCTTTGCTACTGACATTTTCTTCTTTTTGTTTCGTCTGTTACACTGTTTGATACAAGTGACAGAAATGTCTCTATGCAATTCCTTGAAAAAAAAAAATAAAAAAAAAAGCGGGCCGN]
[+] EMBL AK102467 [CGCAACATTCTCATTTCTCTCTCTCGTCCCCGCCCCACCCCCACCCACCACACCACACCCCCGTCTCCGCGCGAAAATTCCCACGCCACGCGCGCTGGAAGAGAGGGAAGGCTTTTCCTCCGTTCTCCGCCCACGCGCCGTCATCGCTGCCCGCCTTTCTTCCTCCGCTTTGTTTGGGCCGGAGCGGGGGGCGCACCGGCGCCGGCGACGTCTCTCTTCCGAATCGGGAGGCGGGAGCCAGTTCATGGAATCTGGTGGAATTGATGCTCAAGTCAGAGCAATCGAGCAGCGCACAAGATTGGAGATTCCTATACGTGATTGAGATTGCAAATGTGGCGCCTGTTCAATGAGTTGTGGGATGTTCTAGGATCTGGGTTTTTCTCATCGAGGTTTCTTTAATCCAGCTCAAATCTATTTACACCTCATCCGTTTGCACCGAGATCATCTCTGTGTGTGTGGTCACCGTGAGATTAGGAGGAGATGGACGAGGAGGATTACTCGTGGGTTCGGCGGACAAGGTTCTCCCACTCCGTCGTCCGCTCCAAGTCCGGCAGGGAGCAGTTCGGTGCATTCGTCGAGCAGTTCAACCGCGGCGCGGCACGGAGGCAGAGAGGGCCCGGCTTCAGGGTTCATGCCTCCATGGCCCTCAACCTTGGAACCGAGGGCGAGGCTCCCAGCCACCACCTCGGCGAATTCCTCCGTTCCGAGGACGACAGGATCGTCGAATGCTCAGCCATCGTCGGAGACGAAGCCAGCTTCGTCGTCCTCGGACGCCAAACTGGAGCAGCACGAGAAGAGCCTCAACTTGGAACCAAGGACGAGGCTCTCGGCCACCACCTCGGCGAATTCCTCTGTTCCGTGGACGACAGGATCGTCGAATGCCCAGCCGTTGTCAGAGACAAAGACAGCTTCGTCCTCCTCGGACGCCAAACCGGAGCAGCAAGAGAAGCCTCGTGATCATCAGCCGTCGCAAGAAGTGTCCACCAAGCAGGATGATAAGGCTGAAAATGACACGAAGGCAACAGCCACATCTGGGCCTCTCGAGTTCTCCTTCCATCCTGATGAGCAAACCTTGAGGCTGCAGAGGGCGTGTTCCAGCCCTGTTCCTTTCCCAAGCAACAAGAACATGCTGGTGGCTGATGCTGCAGCACGTAGCTCATCTCTCAAGGTTGCCGGCGAGGGGCCGAAGCCGAAGCCGAAGCAGAGAGCAAGGTCCCCTCCCCTGCGTCGTGACGTTCCTGAGCTGTTCAAGGAGGCCAAATCGTCAAGCAAGAGGTTTTCCACACCGCCACCGCGCCGGAAGCCTTCGTCTCCACCGGCGCCGAGTAGGAGCCCTCCTCATGTCTTTGCCACGGCGAGAGCGCATGGCAAGCCGAAGCATAAGAAGGATTCCTCTGCCAATGGAAGGGCGAAGGTCGCCGCACTTGAGGTGCTCGAGAAGTGGACCGTCGATCGCTCGCAGCTGCTCATCGGGCACAGGTTCGCCTCCGGGGCGCACAGTCGCTTGTTCCATGGAATCTACAAGGAGCAGCCTGTCGCCGTGAAGTTCATCAGGCAACCTGAGGATGAGGAAGATGCAGAGCTGGCCGCGCAGCTTGAAAAGCAGTTCAACACGGAGGTCACCACACTGTCCCGCCTGAACCATCCTAATGTCATTAAGCTGATTGGAGCATGCAGTAGCCCACCTGTCTTTTGTGTCATCACCGAGTTTCTTTCTGGGGGTTCTTTAAGAACATTTCTGCACAAGCAGGAGCACAAATCTCTACCTTTAGAGAAGATCATTTCAATTGGTTTGGATATTGCAAATGGCATTGGATATATTCACTCACAAGGAGTTGTTCATCGTGATGTGAAACCAGAGAACATCATATTTGATTCAGAATTTTGTGCGAAGATTGTTGATTTTGGAATATCTTGTGAAGAAGCAGAGTGTGACCCTCTGGCGAATGACACTGGGACTTTCAGATGGATGGCTCCAGAGATGATGAAGCACAAACCTTATGGTCGAAAGGTTGATGTTTACAGCTTTGGCCTTATCTTATGGGAAATGTTTACCGGGTCGGTACCTTATGAAGACTTGAATCCATTCCAGGCAGCTTTTGCTGTTTTTGATAAGAA CGAGAGGCCGGTCATCCCCAGTAGCTGCCCTGCGCCACTACGGCTTCTAATTGAGCAATGTTGGGCCTCGCAACCAGATAAAAGGCCTGAATTCTGGCAAATAGTACAGATATTGGACAAGTTTAAGGCGGTTCTAGATAAAGATGGAACA CTGGACAATATGCCATGCTTAAACTTGCAA GGAACTCATGATCACAAGAATTGGCTAGCTCACTGGGTCCAGAAGCTCAAACATACCCATCA TGATCTCTCTGGACCTCCGCCACCAAAATTGATGTAGTTAATCCTCTCCCTTCCAAACTATGCTAATCGGATAGGCCTCAGAATGTAACTGTCAATTTTTTGCTTTGTTATATAGGAAAAATATATGTGTTTGTCTTCGCGATTTTATAGCACAGTAAACATTTGCTTAGCTTTGCTAGTGACATTTTCTTCTTTTTGTTTCGTCTGTTACACTGTTTGATACAAGTGACAGAAATGTCTCTATGCAATTCCTTGA ]
[+] EMBL CB634969 [ CCCACGCCACGCGCGCCGGAAGAGAGGGAAGGCTTTTCCTCCGTTCTCCGCCCACGCGCCGTCATCGTTGCCCGCCTTTCTTCCTCCGCTTTGTTTGGGCCGGAGCGGGGGGCGCACCGGCGCCGGCGACGTCTCTCTTCCGAATCGGGAGGCGGGAGCCAGTTCATGGAATCTGGTGGAATTGATGCTCAAGTCAGAGCAATCGAGCAGCGCACAAGATTGGAGATTCCTATACGTGATTGAGATTGCAAATGTGGCGCCTGTTCAATGAGTTGTGGGATGTTCTAGGATCTGGGTTTTTCTCATCGAGGTTTCTTTAATCCAGCTCAAATCTATTTACACCTCATCCGTTTGCACCGAGATCATCTCTGTGTGTGTGGTCACCGTGAGATTAGGAGGAGATGGACGAGGAGGATTACTCGTGGGTTCGGCGGACAAGGTTCTCCCACTCCGTCGTCCGCTCCAAGTCCGGCAGGGAGCAGTTCGGTGCATTCGTCGAGCAGTTCAACCGCGGCGCGGCACGGAGGCAGAGAGGGCCCGG TTCAGGGTTCATG CTCCATGG CCTCAA CTTGGAACCGAGGGCGAGGCTCCCAGCCACCACCTCGGCGAATTCCTCCGTTCCGAGGACGACAGGATCGTCGAATGCTCAGCCATCGTCGGAGACGAAGCCAGCTTCGTCGTCCTCGGACGCCAAACCGGAGCAGCACGAGAAGAGCCTCAACTTGGAACCAAGGACGAGGCTNTCGGCCACCACCTCAGCGAATTCCTCTGTTCCGTGGACGACAGGATCGTCGAATGCCCAGCCGTTGTCAGAGACAAA ]
[+] EMBL CB625398 [ CACCGGC CCCTTAAGGAGCCCTCCTCATGCCTTTGCCACGGCGAGAGCGCTTGGCAAGCCGAAGCATAAGAAGGATTCCTCTGCCAATGGAAGGGCGAAGGTCGCCGCACTTGAGGTGCTCGAGAAATGGACCGTCGATCGCTCGCAGCTGCTCATCGGGCACAGGTTCGCCTCCGGGGCGCACAGTCGCTTGTTCCATGGAATCTACAAGGAGCAGCCTGTCGCCGTGAAGTTCATCAGGCAACCTGAGGATGAGGAAGATGCAGAGCTGGCCGCGCAGCTTGAAAAGCAGTTCAACACGGAGGTCACCACACTGTCCCGCCTGAACCATCCTAATGTCATTAAGCTGATTGGAGCATGCAGTAGCCCACCTGTCTTTTGTGTCATCACCGAGTTTCTTTCTGGGGGTTCTTTAAGAACATTTCTGCACAAGCAGGAGCACAAATCTCTACCTTTAGAGAAGATCATTTCAATTGGTTTGGATATTGCAAATGGCATTGGATATATTCACTCACAAGGAGTTGTTCATCGTGATGTGAAACCAGAGAACATCATATTTGATTCAGAATTTTGTGCGAAGATTGTTGATTTTGGAATATCTTGTGAAGAAGCAGAGTGTGACCCTCTGGCGAATGACACTGGGACTTTCAGATGGATGGCTCCAGAGATGATGAAGCACAAACCTTATGGTCGAAAGGTTGATGTTTACAGCTTTGGCCTTATCTTATGGGAAATGTTTACCGGGTCGGTACCTTATGAAGACTTGAATCCATTCCAGGCAGCTTTTGCTGTTTTTGATAAGAA CGAG ]
[-] EMBL CB625397 [ CGAGTTTCTTTCTGGGGGTTCTTTAAGAACATTTCTGCACAAGCAGGAGCACAAATCTCTACCTTTAGAGAAGATCATTTCAATTGGTTTGGATATTGCAAATGGCATTGGATATATTCACTCACAAGGAGTTGTTCATCGTGATGTGAAACCAGAGAACATCATATTTGATTCAGAATTTTGTGCGAAGATTGTTGATTTTGGAATATCTTGTGAAGAAGCAGAGTGTGACCCTCTGGCGAATGACACTGGGACTTTCAGATGGATGGCTCCAGAGATGATGAAGCACAAACCTTATGGTCGAAAGGTTGATGTTTACAGCTTTGGCCTTATCTTATGGGAAATGTTTACCGGGTCGGTACCTTATGAAGACTTGAATCCATTCCAGGCAGCTTTTGCTGTTTTTGATAAGAA CGAGAGGCCGGTCATCCCCAGTAGCTGCCCTGCGCCACTACGGCTTCTAATTGAGCAATGTTGGGCCTCGCAACCAGATAAAAGGCCTGAATTCTGGCAAATAGTACAGATATTGGACAAGTTTAAGGCGGTTCTTGATAAAGATGGAACA CTGGACAATATGCCATGCTTAAACTTGCAA GGAACTCATGATCACAAGAATTGGCTAGCTCACTGGGTCCAGAAGCTCAAACATACCCATCA TGATCTCTCTGGACCTCCGCCACCAAAATTGCTGTAGTTAATCCTCTCCCTTCCAAACTATGCTAATCGGATAGGCCTCAGAATGTAACTGTCAATTTTTTGCTTTGTTATATAGGAAAAATATATGTGTTTGTCTTCGCGATTTTATAGCACAGTAA ]
[+] EMBL CB685049 [ tcccttGGATCTTTAAGAACATTTCTGCACAAGCAGGAGCACAAATCTCTACCTTTAGAGAAGATCATTTCAATTGGTTTGGATATTGCAAATGGCATTGGATATATTCACTCACAAGGAGTTGTTCATCGTGATGTGAAACCAGAGAACATCATATTTGATTCAGAATTTTGTGCGAAGATTGTTGATTTTGGAATATCTTGTGAAGAAGCAGAGTGTGACCCTCTGGCGAATGACACTGGGACTTTCAGATGGATGGCTCCAGAGATGATGAAGCACAAACCTTATGGTCGAAAGGTTGATGTTTACAGCTTTGGCCTTATCTTATGGGAAATGTTTACCGGGTCGGTACCTTATGAAGACTTGAATCCATTCCAGGCAGCTTTTGCTGTTTTTGATAAGAA CGAGAGGCCGGTCATCCCCAGTAGCTGCCCTGCGCCACTACGGCTTCTAATTGAGCAATGTTGGGCCTCGCAACCAGATAAAAGGCCTGAATTCTGGCAAATAGTACAGATATTGGACAAGTTTAAGGCGGTTCTAGATAAAGATGGAACA CTGGACAATATGCCATGCTTAAACTTGCAA GGAACTCATGATCACAAGAATTGGCTAGCTCACTGGGTCCAGAAGCTCAAACATACCCATCA TGATCTCTCTGGACCTCCGCCACCAAAATTGATGTAGTTAATCCTCTCCCTTCCAAACTATGCTAATCGGATAGGCCTCAGAATGTAACTGTCAATTTTTTGCTTTGTTATATAGGAAAAATATATGTGTTTGTCTTC ]
[+] EMBL C91887 [ TGGAATATCTTGTGAAGAAGCAGAGTGTGACCCTCTGGCGAATGACACTGGGACTTTCAGATGGATGGCTCCAGAGATGATGAAGCACAAACCTTATGGTCGAAAGGTTGATGTTTACAGCTTTGGCCTTATCTTATGGGAAATGTTTACCGGGTCGGTACCTTATGAAGACTTGAATCCATTCCAGGCAGCTTTTGCTGTTTTTGATAAGAA CGAGAGGCCGGTCATCCCCAGTAGCTGCCCTGCGCCACTACGGCTTCTAATTGAGCAATGTTGGGCCTCGCAACCAGATAAAAGGCCTGAATTCTGGCAAATAGTACAGATATTGGACAAGTTTAAGGCGGTTCTAGATAAAGATGGAACA CTGGACAATATGCCATGCTTAAACTTGCAAGGGAACTCATGATCACAAGAATTGGCTAGCTCACTGGGTCCAGAAGCTCAAACATACCCATCA TGATCTCTCTGGACCTC ]
[+] EMBL CA765987 [ TTGTGAAGAAGCAGAGTGTGACCCTCTGGCGAATGACACTGGGACTTTCAGATGGATGGCTCCAGAGATGATGAAGCACAAACCTTATGGTCGAAAGGTTGATGTTTACAGCTTTGGCCTTATCTTATGGGAAATGTTTACCGGGTCGGTACCTTATGAAGACTTGAATCCATTCCAGGCAGCTTTTGCTGTTTTTGATAAGAA CGAGAGGCCGGTCATCCCCAGTAGCTGCCCTGCGCCACTACGGCTTCTAATTGAGCAATGTTGGGCCTCGCAACCAGATAAAAGGCCTGAATTCTGGCAAATAGTACAGATATTGGACAAGTTTAAGGCGGTTCTTGATAAAGATGGAACA CTGGACAATATGCCATGCTTAAACTTGCAA GGAACTCATGATCACAAGAATTGGCTAGCTCACTGGGTCCAGAAGCTCAAACATACCCATCA TGATCTCTCTGGACCTCCGCCACCAAAATTGCTGTAGTTAATCCTCTCCCTTCCAAACTATGCTAATCGGATAGGCCTCAGAATGTAACTGTCAATTTTTTGCTTTGTTATATAGGAAAAATATATGTGTTTGTCTTCGCGATTTTATAGCACAGTAAACATTTGCTTAGCTTTGCTACTGACATTTTCTTCTTTTTGGTTCGTCTGGTACACTGGTTGATACAAGTGACAGAAATGTCTCTATGCAATTCCTTGAAAAAAAAAAATAAAAAAAAAAGCGGGCCGN]
[+] EMBL BI812710 [ GAACCGAGAGCCCGGTCATCCCCAGTAGCTGCCCTGCGCCACTACGGCTTCTAATTGACCAATGTT GGCCTCGCAACCAGATAAAAGGCCTGAATTCT GCAAATAGTACAGATATTGGACAAGTTTAAGCCGGTTCTTGATAAAGATGGAACACCTGGACAATATGCCATGCTTAAACTTGCAA GGAACTCATGATCACAAGAATTGGCTAGCTCACTGGGTCCAGAAGCTCAAACATACCCATCAGTGATCTCTCTGGACCTCCGCCACC AAATTGCTGTAGTTAATCCTCTCCCTTCC AACTATGCTAATCGGATAGGCCTCAGAATGTAACTGTCAATTTTTTGCTTTGTTATATAGGAAAAATATATGTGTTTGTCTTCGCGATTTTATAGCACAGTAAACATTTGCTTAGCTTTGCTACTGACATTTTCTTCTTTTTGTTTCGTCTGTTACACTGTTTGATACAAGTGACAGAAATGTCTCTATGCcaaaaaaaa ]
consensusID : consensus_12192#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 758 fasta sequence
[TTCAATTGGTTTGGATATTGCAAATGGCATTGGATATATTCACTCACAAGGAGTTGTTCATCGTGATGTGAAACCAGAGAACATCATATTTGATTCAGAATTTTGTGCGAAGATTGTTGATTTTGGAATATCTTGTGAAGAAGCAGAGTGTGACCCTCTGGCGAATGACACTGGGACTTTCAGATGGATGGCTCCAGAGATGATGAAGCACAAACCTTATGGTCGAAAGGTTGATGTTTACAGCTTTGGCCTTATCTTATGGGAAATGTTTACCGGGTCGGTACCTTATGAAGACTTGAATCCATTCCAGGCAGCTTTTGCTGTTTTTGATAAGAACGAGAGGCCGGTCATCCCCAGTAGCTGCCCTGCGCCACTACGGCTTCTAATTGAGCAATGTTGGGCCTCGCAACCAGATAAAAGGCCTGAATTCTGGCAAATAGTACAGATATTGGACAAGTTTAAGGCGGTTCTTGATAAAGATGGAACACTGGACAATATGCCATGCTTAAACTTGCAAGGAACTCATGATCACAAGAATTGGCTAGCTCACTGGGTCCAGAAGCTCAAACATACCCATCATGATCTCTCTGGACCTCCGCCACCAAAATTGCTGTAGTTAATCCTCTCCCTTCCAAACTATGCTAATCGGATAGGCCTCAGAATGTAACTGTCAATTTTTTGCTTTGTTATATAGGAAAAATATATGTGTTTGTCATGGCGATTTTATAGCACAGTAAACATTTGCTTAAAATATAAAG]
[-] EMBL CB634970 [TTCAATTGGTTTGGATATTGCAAATGGCATTGGATATATTCACTCACAAGGAGTTGTTCATCGTGATGTGAAACCAGAGAACATCATATTTGATTCAGAATTTTGTGCGAAGATTGTTGATTTTGGAATATCTTGTGAAGAAGCAGAGTGTGACCCTCTGGCGAATGACACTGGGACTTTCAGATGGATGGCTCCAGAGATGATGAAGCACAAACCTTATGGTCGAAAGGTTGATGTTTACAGCTTTGGCCTTATCTTATGGGAAATGTTTACCGGGTCGGTACCTTATGAAGACTTGAATCCATTCCAGGCAGCTTTTGCTGTTTTTGATAAGAACGAGAGGCCGGTCATCCCCAGTAGCTGCCCTGCGCCACTACGGCTTCTAATTGAGCAATGTTGGGCCTCGCAACCAGATAAAAGGCCTGAATTCTGGCAAATAGTACAGATATTGGACAAGTTTAAGGCGGTTCTTGATAAAGATGGAACACTGGACAATATGCCATGCTTAAACTTGCAAGGAACTCATGATCACAAGAATTGGCTAGCTCACTGGGTCCAGAAGCTCAAACATACCCATCATGATCTCTCTGGACCTCCGCCACCAAAATTGCTGTAGTTAATCCTCTCCCTTCCAAACTATGCTAATCGGATAGGCCTCAGAATGTAACTGTCAATTTTTTGCTTTGTTATATAGGAAAAATATATGTGTTTGTCATGGCGATTTTATAGCACAGTAAACATTTGCTTAAAATATAAAG]
consensusID : consensus_12192#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 497 fasta sequence
[GAAAGTTGATGTTTACAGCTTTGCCTTATCTTATGGGAAATGTTTACCGGGTCGGTACCTTATGAAGACTTGAATCCATTCCAGGCAGCTTTTCTGTTTTTGATAAGAACGAGAGGCCGGTCATCCCCACGTAGCTGCCCTGCGCCACTACGGCTTCTAATTGAGCCATGTTGGGCCTCGCAACCAGATAAAAGGCCTGAATTCTGGCAAATAGTACAGATATTGGACAAGTTTAAGCGGTTCTTGATAAAGATGGAACACCTGGACATATGCCATGCTTAAACTTGCAAGGAACTCATGATCACAAGAATTGGCTAGCTCACTGGGTCCAGAAGCTCAAACATACCCATCATGATCTCTCTGGACCTCCGCCACCAAATTGCTGTAGTTAATCCTCTCCCTTCCAACTATGCTAATCGGATAGGCCTCAGAATGTAACTGTCATTTTTTGCTTTGTTATATAGGAAAAATATATGTGTTTGTCTTAAAAAAAAAAA]
[+] EMBL BI813456 [GAAAGTTGATGTTTACAGCTTTGCCTTATCTTATGGGAAATGTTTACCGGGTCGGTACCTTATGAAGACTTGAATCCATTCCAGGCAGCTTTTCTGTTTTTGATAAGAACGAGAGGCCGGTCATCCCCACGTAGCTGCCCTGCGCCACTACGGCTTCTAATTGAGCCATGTTGGGCCTCGCAACCAGATAAAAGGCCTGAATTCTGGCAAATAGTACAGATATTGGACAAGTTTAAGCGGTTCTTGATAAAGATGGAACACCTGGACATATGCCATGCTTAAACTTGCAAGGAACTCATGATCACAAGAATTGGCTAGCTCACTGGGTCCAGAAGCTCAAACATACCCATCATGATCTCTCTGGACCTCCGCCACCAAATTGCTGTAGTTAATCCTCTCCCTTCCAACTATGCTAATCGGATAGGCCTCAGAATGTAACTGTCATTTTTTGCTTTGTTATATAGGAAAAATATATGTGTTTGTCTTAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12192#0 CGCAACATTCTCATTTCTCTCTCTCGTCCCCGCCCCACCCCCACCCACCACACCACACCC 60
consensus_12192#1 ------------------------------------------------------------
consensus_12192#2 ------------------------------------------------------------
consensus_12192#0 CCGTCTCCGCGCGAAAATTCCCACGCCACGCGCGCTGGAAGAGAGGGAAGGCTTTTCCTC 120
consensus_12192#1 ------------------------------------------------------------
consensus_12192#2 ------------------------------------------------------------
consensus_12192#0 CGTTCTCCGCCCACGCGCCGTCATCGCTGCCCGCCTTTCTTCCTCCGCTTTGTTTGGGCC 180
consensus_12192#1 ------------------------------------------------------------
consensus_12192#2 ------------------------------------------------------------
consensus_12192#0 GGAGCGGGGGGCGCACCGGCGCCGGCGACGTCTCTCTTCCGAATCGGGAGGCGGGAGCCA 240
consensus_12192#1 ------------------------------------------------------------
consensus_12192#2 ------------------------------------------------------------
consensus_12192#0 GTTCATGGAATCTGGTGGAATTGATGCTCAAGTCAGAGCAATCGAGCAGCGCACAAGATT 300
consensus_12192#1 ------------------------------------------------------------
consensus_12192#2 ------------------------------------------------------------
consensus_12192#0 GGAGATTCCTATACGTGATTGAGATTGCAAATGTGGCGCCTGTTCAATGAGTTGTGGGAT 360
consensus_12192#1 ------------------------------------------------------------
consensus_12192#2 ------------------------------------------------------------
consensus_12192#0 GTTCTAGGATCTGGGTTTTTCTCATCGAGGTTTCTTTAATCCAGCTCAAATCTATTTACA 420
consensus_12192#1 ------------------------------------------------------------
consensus_12192#2 ------------------------------------------------------------
consensus_12192#0 CCTCATCCGTTTGCACCGAGATCATCTCTGTGTGTGTGGTCACCGTGAGATTAGGAGGAG 480
consensus_12192#1 ------------------------------------------------------------
consensus_12192#2 ------------------------------------------------------------
consensus_12192#0 ATGGACGAGGAGGATTACTCGTGGGTTCGGCGGACAAGGTTCTCCCACTCCGTCGTCCGC 540
consensus_12192#1 ------------------------------------------------------------
consensus_12192#2 ------------------------------------------------------------
consensus_12192#0 TCCAAGTCCGGCAGGGAGCAGTTCGGTGCATTCGTCGAGCAGTTCAACCGCGGCGCGGCA 600
consensus_12192#1 ------------------------------------------------------------
consensus_12192#2 ------------------------------------------------------------
consensus_12192#0 CGGAGGCAGAGAGGGCCCGGCTTCAGGGTTCATGCCTCCATGGCCCTCAACCTTGGAACC 660
consensus_12192#1 ------------------------------------------------------------
consensus_12192#2 ------------------------------------------------------------
consensus_12192#0 GAGGGCGAGGCTCCCAGCCACCACCTCGGCGAATTCCTCCGTTCCGAGGACGACAGGATC 720
consensus_12192#1 ------------------------------------------------------------
consensus_12192#2 ------------------------------------------------------------
consensus_12192#0 GTCGAATGCTCAGCCATCGTCGGAGACGAAGCCAGCTTCGTCGTCCTCGGACGCCAAACT 780
consensus_12192#1 ------------------------------------------------------------
consensus_12192#2 ------------------------------------------------------------
consensus_12192#0 GGAGCAGCACGAGAAGAGCCTCAACTTGGAACCAAGGACGAGGCTCTCGGCCACCACCTC 840
consensus_12192#1 ------------------------------------------------------------
consensus_12192#2 ------------------------------------------------------------
consensus_12192#0 GGCGAATTCCTCTGTTCCGTGGACGACAGGATCGTCGAATGCCCAGCCGTTGTCAGAGAC 900
consensus_12192#1 ------------------------------------------------------------
consensus_12192#2 ------------------------------------------------------------
consensus_12192#0 AAAGACAGCTTCGTCCTCCTCGGACGCCAAACCGGAGCAGCAAGAGAAGCCTCGTGATCA 960
consensus_12192#1 ------------------------------------------------------------
consensus_12192#2 ------------------------------------------------------------
consensus_12192#0 TCAGCCGTCGCAAGAAGTGTCCACCAAGCAGGATGATAAGGCTGAAAATGACACGAAGGC 1020
consensus_12192#1 ------------------------------------------------------------
consensus_12192#2 ------------------------------------------------------------
consensus_12192#0 AACAGCCACATCTGGGCCTCTCGAGTTCTCCTTCCATCCTGATGAGCAAACCTTGAGGCT 1080
consensus_12192#1 ------------------------------------------------------------
consensus_12192#2 ------------------------------------------------------------
consensus_12192#0 GCAGAGGGCGTGTTCCAGCCCTGTTCCTTTCCCAAGCAACAAGAACATGCTGGTGGCTGA 1140
consensus_12192#1 ------------------------------------------------------------
consensus_12192#2 ------------------------------------------------------------
consensus_12192#0 TGCTGCAGCACGTAGCTCATCTCTCAAGGTTGCCGGCGAGGGGCCGAAGCCGAAGCCGAA 1200
consensus_12192#1 ------------------------------------------------------------
consensus_12192#2 ------------------------------------------------------------
consensus_12192#0 GCAGAGAGCAAGGTCCCCTCCCCTGCGTCGTGACGTTCCTGAGCTGTTCAAGGAGGCCAA 1260
consensus_12192#1 ------------------------------------------------------------
consensus_12192#2 ------------------------------------------------------------
consensus_12192#0 ATCGTCAAGCAAGAGGTTTTCCACACCGCCACCGCGCCGGAAGCCTTCGTCTCCACCGGC 1320
consensus_12192#1 ------------------------------------------------------------
consensus_12192#2 ------------------------------------------------------------
consensus_12192#0 GCCGAGTAGGAGCCCTCCTCATGTCTTTGCCACGGCGAGAGCGCATGGCAAGCCGAAGCA 1380
consensus_12192#1 ------------------------------------------------------------
consensus_12192#2 ------------------------------------------------------------
consensus_12192#0 TAAGAAGGATTCCTCTGCCAATGGAAGGGCGAAGGTCGCCGCACTTGAGGTGCTCGAGAA 1440
consensus_12192#1 ------------------------------------------------------------
consensus_12192#2 ------------------------------------------------------------
consensus_12192#0 GTGGACCGTCGATCGCTCGCAGCTGCTCATCGGGCACAGGTTCGCCTCCGGGGCGCACAG 1500
consensus_12192#1 ------------------------------------------------------------
consensus_12192#2 ------------------------------------------------------------
consensus_12192#0 TCGCTTGTTCCATGGAATCTACAAGGAGCAGCCTGTCGCCGTGAAGTTCATCAGGCAACC 1560
consensus_12192#1 ------------------------------------------------------------
consensus_12192#2 ------------------------------------------------------------
consensus_12192#0 TGAGGATGAGGAAGATGCAGAGCTGGCCGCGCAGCTTGAAAAGCAGTTCAACACGGAGGT 1620
consensus_12192#1 ------------------------------------------------------------
consensus_12192#2 ------------------------------------------------------------
consensus_12192#0 CACCACACTGTCCCGCCTGAACCATCCTAATGTCATTAAGCTGATTGGAGCATGCAGTAG 1680
consensus_12192#1 ------------------------------------------------------------
consensus_12192#2 ------------------------------------------------------------
consensus_12192#0 CCCACCTGTCTTTTGTGTCATCACCGAGTTTCTTTCTGGGGGTTCTTTAAGAACATTTCT 1740
consensus_12192#1 ------------------------------------------------------------
consensus_12192#2 ------------------------------------------------------------
consensus_12192#0 GCACAAGCAGGAGCACAAATCTCTACCTTTAGAGAAGATCATTTCAATTGGTTTGGATAT 1800
consensus_12192#1 ------------------------------------------TTCAATTGGTTTGGATAT 18
consensus_12192#2 ------------------------------------------------------------
consensus_12192#0 TGCAAATGGCATTGGATATATTCACTCACAAGGAGTTGTTCATCGTGATGTGAAACCAGA 1860
consensus_12192#1 TGCAAATGGCATTGGATATATTCACTCACAAGGAGTTGTTCATCGTGATGTGAAACCAGA 78
consensus_12192#2 ------------------------------------------------------------
consensus_12192#0 GAACATCATATTTGATTCAGAATTTTGTGCGAAGATTGTTGATTTTGGAATATCTTGTGA 1920
consensus_12192#1 GAACATCATATTTGATTCAGAATTTTGTGCGAAGATTGTTGATTTTGGAATATCTTGTGA 138
consensus_12192#2 ------------------------------------------------------------
consensus_12192#0 AGAAGCAGAGTGTGACCCTCTGGCGAATGACACTGGGACTTTCAGATGGATGGCTCCAGA 1980
consensus_12192#1 AGAAGCAGAGTGTGACCCTCTGGCGAATGACACTGGGACTTTCAGATGGATGGCTCCAGA 198
consensus_12192#2 ------------------------------------------------------------
consensus_12192#0 GATGATGAAGCACAAACCTTATGGTCGAAAGGTTGATGTTTACAGCTTTGGCCTTATCTT 2040
consensus_12192#1 GATGATGAAGCACAAACCTTATGGTCGAAAGGTTGATGTTTACAGCTTTGGCCTTATCTT 258
consensus_12192#2 ---------------------------GAAAGTTGATGTTTACAGCTTTG-CCTTATCTT 32
** ******************* *********
consensus_12192#0 ATGGGAAATGTTTACCGGGTCGGTACCTTATGAAGACTTGAATCCATTCCAGGCAGCTTT 2100
consensus_12192#1 ATGGGAAATGTTTACCGGGTCGGTACCTTATGAAGACTTGAATCCATTCCAGGCAGCTTT 318
consensus_12192#2 ATGGGAAATGTTTACCGGGTCGGTACCTTATGAAGACTTGAATCCATTCCAGGCAGCTTT 92
************************************************************
consensus_12192#0 TGCTGTTTTTGATAAGAACGAGAGGCCGGTCATCCCCA-GTAGCTGCCCTGCGCCACTAC 2159
consensus_12192#1 TGCTGTTTTTGATAAGAACGAGAGGCCGGTCATCCCCA-GTAGCTGCCCTGCGCCACTAC 377
consensus_12192#2 T-CTGTTTTTGATAAGAACGAGAGGCCGGTCATCCCCACGTAGCTGCCCTGCGCCACTAC 151
* ************************************ *********************
consensus_12192#0 GGCTTCTAATTGAGCAATGTTGGGCCTCGCAACCAGATAAAAGGCCTGAATTCTGGCAAA 2219
consensus_12192#1 GGCTTCTAATTGAGCAATGTTGGGCCTCGCAACCAGATAAAAGGCCTGAATTCTGGCAAA 437
consensus_12192#2 GGCTTCTAATTGAGCCATGTTGGGCCTCGCAACCAGATAAAAGGCCTGAATTCTGGCAAA 211
*************** ********************************************
consensus_12192#0 TAGTACAGATATTGGACAAGTTTAAGGCGGTTCTAGATAAAGATGGAACACTGGACAATA 2279
consensus_12192#1 TAGTACAGATATTGGACAAGTTTAAGGCGGTTCTTGATAAAGATGGAACACTGGACAATA 497
consensus_12192#2 TAGTACAGATATTGGACAAGTTTAAG-CGGTTCTTGATAAAGATGGAACACCTGGACATA 270
************************** ******* **************** * ***
consensus_12192#0 TGCCATGCTTAAACTTGCAAGGAACTCATGATCACAAGAATTGGCTAGCTCACTGGGTCC 2339
consensus_12192#1 TGCCATGCTTAAACTTGCAAGGAACTCATGATCACAAGAATTGGCTAGCTCACTGGGTCC 557
consensus_12192#2 TGCCATGCTTAAACTTGCAAGGAACTCATGATCACAAGAATTGGCTAGCTCACTGGGTCC 330
************************************************************
consensus_12192#0 AGAAGCTCAAACATACCCATCATGATCTCTCTGGACCTCCGCCACCAAAATTGCTGTAGT 2399
consensus_12192#1 AGAAGCTCAAACATACCCATCATGATCTCTCTGGACCTCCGCCACCAAAATTGCTGTAGT 617
consensus_12192#2 AGAAGCTCAAACATACCCATCATGATCTCTCTGGACCTCCGCCACCAAA-TTGCTGTAGT 389
************************************************* **********
consensus_12192#0 TAATCCTCTCCCTTCCAAACTATGCTAATCGGATAGGCCTCAGAATGTAACTGTCAATTT 2459
consensus_12192#1 TAATCCTCTCCCTTCCAAACTATGCTAATCGGATAGGCCTCAGAATGTAACTGTCAATTT 677
consensus_12192#2 TAATCCTCTCCCTTCCAA-CTATGCTAATCGGATAGGCCTCAGAATGTAACTGTCA-TTT 447
****************** ************************************* ***
consensus_12192#0 TTTGCTTTGTTATATAGGAAAAATATATGTGTTTGTCTTCGCGATTTTATAGCACAGTAA 2519
consensus_12192#1 TTTGCTTTGTTATATAGGAAAAATATATGTGTTTGTCATGGCGATTTTATAGCACAGTAA 737
consensus_12192#2 TTTGCTTTGTTATATAGGAAAAATATATGTGTTTGTCTTAAAAAAAAAAA---------- 497
************************************* * * *
consensus_12192#0 ACATTTGCTTAGCTTTGCTACTGACATTTTCTTCTTTTTGTTTCGTCTGTTACACTGTTT 2579
consensus_12192#1 ACATTTGCTTAAAATATAAAG--------------------------------------- 758
consensus_12192#2 ------------------------------------------------------------
consensus_12192#0 GATACAAGTGACAGAAATGTCTCTATGCAATTCCTTGAAAAAAAAAAATAAAAAAAAAAG 2639
consensus_12192#1 ------------------------------------------------------------
consensus_12192#2 ------------------------------------------------------------
consensus_12192#0 CGGGCCGN 2647
consensus_12192#1 --------
consensus_12192#2 --------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||