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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1225#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1589 fasta sequence
[GAGCAGCAGCCGCCAGCAGCGGCGACCGGAGGAGAGAGCGGCGTCGCGGCGGCGGCGGCGATATCGGTGTCGTGCGGGCTGGAGTGGGTGGTGTGCCTGGGGTGCACGCGGTGGGCGTGGAAGCGGCTCACCTACATCGGCGCCTACGACAGCGAGGCGTGGCCGGCGGCGGCGCCGGGGGAGTTCGAGCCCGTCCCGCGAATCTGCCGCGTCATCCTCGCCATCTACGAGGACGACCTCTCCAACCCCACCAAGTTCGCGCCGCCCGGCCGCGGGTACGCCGGCGTCGACCTCGCCGGCGTCGTCAAGCGCGCCACCTACGAGCACGTCGGCAACACCTGCCCTCCCTACATCGTCTACGTTGACCACCGCCACAAGGAGGTCGTCCTCGCCATCCGCGGCCTCAACCTCACCCGCAACGCCGACTACAAGGTCGTTCTCATGGACAACAAGCTCGGGATGCAGATGTTCGACGGCGGCTACGTCCACCACGGCCTTCTCAAGGCGGCGCAGTTCATCCTGGAGAGGGAGACGAAGACGCTGCAGGAGCTGCTGCAGCAGAACGGGCCCGACTACAAGCTCATCTTCGCGGGGCACTCGCTGGGCTCCGGCATCGCCGCGCTCATGACCGTGCTCGTGGTGAACAACCGGAAGATGTTTGGGAACATACCGAGGAGCCAGATACGGTGCTACGCGCTCGCCCCCGCCCGGTGCATGTCGCTCAACCTCGCCGTCAAGTACGCCGACGTGATCAACTCCGTCGTGCTGCAGGATGATTTTTTGCCAAGAACGCCAACACCGTTGGAGTACATTTTTGGGTCTATATTCTGCTTGCCCTGCTTGTTGTTTATCATGTGCCTGAGAGATACATTTAAGCAAGACAAGAGAAAATTTAAAGATCCAAGAAGACTCTATGCTCCTGGTCGAATGTATCATATAGTCGAGAGGAAATTTTGCAGATGTGGAAGATTCCCTCCTGAGGTGAGAACTGCTATTCCAGTGGAAGGCCGATTTGAGCATATTGTGTTGTCATGCAGTACTACTTCTGATCATGCGATTGTATGGATTGAACGAGAATCAGAAAAGGCTTTAGAGCTTATGAAAGGAAATGAGAAACCAACAACTCCGCCTGCGCAACAAAAGATGGAAAGACTGCAGAGTTTTGAGGAAGAACACAAGAATGCCCTCGAGAGAGCAAAGACCTTAGATGTTCCTCACGCAGTTGACTTGTCTGAAGTGGAGATCCAGGAGGGTTCTAGCCCTACGCCGCCCTCTGATACTCATAGTGAAGCCACCTCAGAAGCAAAATCTGCAGGAAGAACCAGTTGGGATGAGCTGATGCATAAGCTTTTCACCAGGGACGAAGGTGGGAAGCTTGTTGTGAAGGAGGACATTAAGGCGAGGAACATTGTTATTGAGTAATACCGACCCTCAGACTTTTGATCTGGTAATTGATTCTTTTGCGTGCATATACAGAAGTTCAACATGAAAATGTTTTTTTTTTTGGATCGAGCCATTTTGCGGTACGAAAACTGTCCCGTGTATATGTAGACCTATCTGTGCATTCTTGAATCCCCAAAGTTTTGTTA]
[+] EMBL AK105344 [GAGCAGCAGCCGCCAGCAGCGGCGACCGGAGGAGAGAGCGGCGTCGCGGCGGCGGCGGCGATATCGGTGTCGTGCGGGCTGGAGTGGGTGGTGTGCCTGGGGTGCACGCGGTGGGCGTGGAAGCGGCTCACCTACATCGGCGCCTACGACAGCGAGGCGTGGCCGGCGGCGGCGCCGGGGGAGTTCGAGCCCGTCCCGCGAATCTGCCGCGTCATCCTCGCCATCTACGAGGACGACCTCTCCAACCCCACCAAGTTCGCGCCGCCCGGCCGCGGGTACGCCGGCGTCGACCTCGCCGGCGTCGTCAAGCGCGCCACCTACGAGCACGTCGGCAACACCTGCCCTCCCTACATCGTCTACGTTGACCACCGCCACAAGGAGGTCGTCCTCGCCATCCGCGGCCTCAACCTCACCCGCAACGCCGACTACAAGGTCGTTCTCATGGACAACAAGCTCGGGATGCAGATGTTCGACGGCGGCTACGTCCACCACGGCCTTCTCAAGGCGGCGCAGTTCATCCTGGAGAGGGAGACGAAGACGCTGCAGGAGCTGCTGCAGCAGAACGGGCCCGACTACAAGCTCATCTTCGCGGGGCACTCGCTGGGCTCCGGCATCGCCGCGCTCATGACCGTGCTCGTGGTGAACAACCGGAAGATGTTTGGGAACATACCGAGGAGCCAGATACGGTGCTACGCGCTCGCCCCCGCCCGGTGCATGTCGCTCAACCTCGCCGTCAAGTACGCCGACGTGATCAACTCCGTCGTGCTGCAGGATGATTTTTTGCCAAGAACGCCAACACCGTTGGAGTACATTTTTGGGTCTATATTCTGCTTGCCCTGCTTGTTGTTTATCATGTGCCTGAGAGATACATTTAAGCAAGACAAGAGAAAATTTAAAGATCCAAGAAGACTCTATGCTCCTGGTCGAATGTATCATATAGTCGAGAGGAAATTTTGCAGATGTGGAAGATTCCCTCCTGAGGTGAGAACTGCTATTCCAGTGGAAGGCCGATTTGAGCATATTGTGTTGTCATGCAGTACTACTTCTGATCATGCGATTGTATGGATTGAACGAGAATCAGAAAAGGCTTTAGAGCTTATGAAAGGAAATGAGAAACCAACAACTCCGCCTGCGCAACAAAAGATGGAAAGACTGCAGAGTTTTGAGGAAGAACACAAGAATGCCCTCGAGAGAGCAAAGACCTTAGATGTTCCTCACGCAGTTGACTTGTCTGAAGTGGAGATCCAGGAGGGTTCTAGCCCTACGCCGCCCTCTGATACTCATAGTGAAGCCACCTCAGAAGCAAAATCTGCAGGAAGAACCAGTTGGGATGAGCTGATGCATAAGCTTTTCACCAGGGACGAAGGTGGGAAGCTTGTTGTGAAGGAGGACATTAAGGCGAGGAACATTGTTATTGAGTAATACCGACCCTCAGACTTTTGATCTGGTAATTGATTCTTTTGCGTGCATATACAGAAGTTCAACATGAAAATGTTTTTTTTTTTGGATCGAGCCATTTTGCGGTACGAAAACTGTCCCGTGTATATGTAGACCTATCTGTGCATTCTTGAATCCCCAAAGTTTTGTTA]
consensusID : consensus_1225#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 476 fasta sequence
[AAAAGGCTTTTAGACCTTATGATAAAGGTAATGAGGACCCACAACTCCCCCGGCTCCACCACAAAAGATGGAAGATCAGGATTTTTGAGAAGGTACACCAAGAATGCCCTCGAGAGACACAAGACCTTAGATGTTCCTCACGCAGTTGACTTGTCTGAAGTGGAGATCCAGGAGGGTTCTTACCCTACGCCGCCCTCTGATGACTCATAGTGGAAACCACCCTCACGGAACCCAAATTCTTGCACGGAAAGAAACCCTTGGGAATTGAACTTTGAATGCAATTAAAGCCTTTTTCCACCCCAGGGAACCGAAAGGGTTGGAAAACCTTTTTTTGTGAAAAGGGAGGGAACCCTTAAAGGCCGAGGGAACCACTTTGGTTAATTGGAAGGTAAATACCCGACCCCTCCAAGACCGTTTTGGAATTCCTTGGGTTAAATGGATGTTCTTTTTGGCGGTGCCAATAATTACACGGAAAG]
[+] EMBL BI808832 [AAAAGGCTTTTAGACCTTATGATAAAGGTAATGAGGACCCACAACTCCCCCGGCTCCACCACAAAAGATGGAAGATCAGGATTTTTGAGAAGGTACACCAAGAATGCCCTCGAGAGACACAAGACCTTAGATGTTCCTCACGCAGTTGACTTGTCTGAAGTGGAGATCCAGGAGGGTTCTTACCCTACGCCGCCCTCTGATGACTCATAGTGGAAACCACCCTCACGGAACCCAAATTCTTGCACGGAAAGAAACCCTTGGGAATTGAACTTTGAATGCAATTAAAGCCTTTTTCCACCCCAGGGAACCGAAAGGGTTGGAAAACCTTTTTTTGTGAAAAGGGAGGGAACCCTTAAAGGCCGAGGGAACCACTTTGGTTAATTGGAAGGTAAATACCCGACCCCTCCAAGACCGTTTTGGAATTCCTTGGGTTAAATGGATGTTCTTTTTGGCGGTGCCAATAATTACACGGAAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1225#0 GAGCAGCAGCCGCCAGCAGCGGCGACCGGAGGAGAGAGCGGCGTCGCGGCGGCGGCGGCG 60
consensus_1225#1 ------------------------------------------------------------
consensus_1225#0 ATATCGGTGTCGTGCGGGCTGGAGTGGGTGGTGTGCCTGGGGTGCACGCGGTGGGCGTGG 120
consensus_1225#1 ------------------------------------------------------------
consensus_1225#0 AAGCGGCTCACCTACATCGGCGCCTACGACAGCGAGGCGTGGCCGGCGGCGGCGCCGGGG 180
consensus_1225#1 ------------------------------------------------------------
consensus_1225#0 GAGTTCGAGCCCGTCCCGCGAATCTGCCGCGTCATCCTCGCCATCTACGAGGACGACCTC 240
consensus_1225#1 ------------------------------------------------------------
consensus_1225#0 TCCAACCCCACCAAGTTCGCGCCGCCCGGCCGCGGGTACGCCGGCGTCGACCTCGCCGGC 300
consensus_1225#1 ------------------------------------------------------------
consensus_1225#0 GTCGTCAAGCGCGCCACCTACGAGCACGTCGGCAACACCTGCCCTCCCTACATCGTCTAC 360
consensus_1225#1 ------------------------------------------------------------
consensus_1225#0 GTTGACCACCGCCACAAGGAGGTCGTCCTCGCCATCCGCGGCCTCAACCTCACCCGCAAC 420
consensus_1225#1 ------------------------------------------------------------
consensus_1225#0 GCCGACTACAAGGTCGTTCTCATGGACAACAAGCTCGGGATGCAGATGTTCGACGGCGGC 480
consensus_1225#1 ------------------------------------------------------------
consensus_1225#0 TACGTCCACCACGGCCTTCTCAAGGCGGCGCAGTTCATCCTGGAGAGGGAGACGAAGACG 540
consensus_1225#1 ------------------------------------------------------------
consensus_1225#0 CTGCAGGAGCTGCTGCAGCAGAACGGGCCCGACTACAAGCTCATCTTCGCGGGGCACTCG 600
consensus_1225#1 ------------------------------------------------------------
consensus_1225#0 CTGGGCTCCGGCATCGCCGCGCTCATGACCGTGCTCGTGGTGAACAACCGGAAGATGTTT 660
consensus_1225#1 ------------------------------------------------------------
consensus_1225#0 GGGAACATACCGAGGAGCCAGATACGGTGCTACGCGCTCGCCCCCGCCCGGTGCATGTCG 720
consensus_1225#1 ------------------------------------------------------------
consensus_1225#0 CTCAACCTCGCCGTCAAGTACGCCGACGTGATCAACTCCGTCGTGCTGCAGGATGATTTT 780
consensus_1225#1 ------------------------------------------------------------
consensus_1225#0 TTGCCAAGAACGCCAACACCGTTGGAGTACATTTTTGGGTCTATATTCTGCTTGCCCTGC 840
consensus_1225#1 ------------------------------------------------------------
consensus_1225#0 TTGTTGTTTATCATGTGCCTGAGAGATACATTTAAGCAAGACAAGAGAAAATTTAAAGAT 900
consensus_1225#1 ------------------------------------------------------------
consensus_1225#0 CCAAGAAGACTCTATGCTCCTGGTCGAATGTATCATATAGTCGAGAGGAAATTTTGCAGA 960
consensus_1225#1 ------------------------------------------------------------
consensus_1225#0 TGTGGAAGATTCCCTCCTGAGGTGAGAACTGCTATTCCAGTGGAAGGCCGATTTGAGCAT 1020
consensus_1225#1 ------------------------------------------------------------
consensus_1225#0 ATTGTGTTGTCATGCAGTACTACTTCTGATCATGCGATTGTATGGATTGAACGAGAATCA 1080
consensus_1225#1 ------------------------------------------------------------
consensus_1225#0 GAAAAGGCTTTAGAGCTTATGA--AAGGAAATGAGAAACCA--ACAACTCCGCCTGCGCA 1136
consensus_1225#1 AAAAGGCTTTTAGACCTTATGATAAAGGTAATGAGGACCCACAACTCCCCCGGCTCCACC 60
*** * ****** ******* **** ****** * *** ** * *** ** * *
consensus_1225#0 ACAAAAGATGGAAAGACTGCAGAGTTTTGAGGAAGAACAC-AAGAATGCCCTCGAGAGAG 1195
consensus_1225#1 ACAAAAGATGGAAGATCAG--GATTTTTGAGAAGGTACACCAAGAATGCCCTCGAGAGAC 118
************* * * ** ******* * * **** ******************
consensus_1225#0 CAAAGACCTTAGATGTTCCTCACGCAGTTGACTTGTCTGAAGTGGAGATCCAGGAGGGTT 1255
consensus_1225#1 ACAAGACCTTAGATGTTCCTCACGCAGTTGACTTGTCTGAAGTGGAGATCCAGGAGGGTT 178
**********************************************************
consensus_1225#0 CTAGCCCTACGCCGCCCTCTGAT-ACTCATAGTG-AAGCCACCT---CAGAAGCAAAATC 1310
consensus_1225#1 CTTACCCTACGCCGCCCTCTGATGACTCATAGTGGAAACCACCCTCACGGAACCCAAATT 238
** ******************* ********** ** ***** * *** * ****
consensus_1225#0 T----GCAGGAAGAACCAGTTGGGA--TGAGCT---GATGCAT---AAGCTTTTCACCAG 1358
consensus_1225#1 CTTGCACGGAAAGAAACCCTTGGGAATTGAACTTTGAATGCAATTAAAGCCTTTTTCCAC 298
* * ***** * ****** *** ** ***** **** *** ***
consensus_1225#0 GG-ACGAAGGTGGGAAGCTTGTTGTGAAGGAGGACATTAAGGCGAGGAACATTGTTATTG 1417
consensus_1225#1 CCCAGGGAACCGAAAGGGTTGGAAAACCTTTTTTTGTGAAAAGGGAGGGAACCCTTAAAG 358
* * * * * * *** * ** * * * *** *
consensus_1225#0 AGTAATACCGACCCTCAGACTTTTGATCTGGTAATTGATT--CTTTTGCGTGCATATACA 1475
consensus_1225#1 GCCGAGGGAACCACTTTGGTTAATTGGAAGGTAAATACCCGACCCCTCCAAGACCGTTTT 418
* * ** * * * ***** * * * * * *
consensus_1225#0 GAAGTTCAACATGA-AAATGTTTTTTTTTTTGGATCGAGCCATTTTGCGGTACGAAAACT 1534
consensus_1225#1 GGAATTCCTTGGGTTAAATGGATGTTCTTTTTGGCGGTGCCAATA-ATTACACGGAAAG- 476
* * *** * ***** * ** **** * * **** * *** ***
consensus_1225#0 GTCCCGTGTATATGTAGACCTATCTGTGCATTCTTGAATCCCCAAAGTTTTGTTA 1589
consensus_1225#1 -------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||