Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 12317 cluster # 12317       Sequences # 10       consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12317#0 length = 2562 sequences # 7  
 consensus_12317#1 length = 573 sequences # 1  
consensus_12317#2 length = 437 sequences # 2  
consensusID : consensus_12317#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 2562
fasta sequence 
                              [CAGGGAAGAAGAGGAACTGAAGCCTTTCTCCCCTGTCCGCCGCTGCGCCCTCCCCCTCTCTGTCCACGTTCCCCCACCCCACCTCGGCCTAAAACCCTAGCCGCCGGCGGAGCGGGACCTCACCGGCGGCGGCGATGAGCGGGGGCGGGCCGCCGAAGAAACGCAACTTCAAGATCGAGCTGTTCAAGCACCGCGTGGAGCTCGACCCCAAGTACGCGGAGCGGACATGGAAGGTCCTGGAGCACGCCATCCACGAGATCTACAACCACAACGCCAGTGGCCTCTCCTTCGAGGAGCTCTACAGGAGTGCCTACAACATGGTGCTCCACAAGTATGGTGAGAAGCTATATGATGGCCTGGAGAGAACTATGACATGGCGCTTGAAGGAAATATCAAAATCAATAGAGGCTGCACAGGGTGGTTTGTTTCTGGAGGAGCTGAATGCCAAGTGGATGGATCACAATAAGGCATTGCAGATGATCCGAGATATTCTAATGTACATGGATCGAACATATGTCCCGCAATCCCGTAGAACACCTGTTCATGAGCTTGGTTTGAATTTGTGGAGGGATCACATAATTCACTCTCCCATGATTCATAGTCGGCTGCTTGATACCCTTCTGGATCTTATTCACAGGGAGAGAATGGGTGAAATGATTAACAGAGGCCTGATGAGGAGCATAACGAAAATGTTAATGGATCTTGGTGCTGCTGTATATCAAGATGACTTTGAGAAGCCGTTTTTGGATGTTACAGCTAGCTTCTACAGTGGAGAGTCTCAGGAGTTCATTGAGTGCTGTGACTGTGGGAACTATCTTAAGAAGTCCGAGAGACGTCTCAATGAGGAAATGGAACGTGTCTCACACTACTTGGATTCTGGCACTGAGGCAAAGATAACTAGTGTGGTTGAGAAAGAAATGATTGCCAATCACATGCATAGATTGGTTCATATGGAAAACTCAGGCCTTGTAAATATGCTTGTAGATGACAAATATGACGACTTGGCTAGGATGTACAACTTATTCCGAAGGGTTTTTGATGGGCTATCGACAATCAGAGATGTGATGACTTCATACCTAAGGGAAACAGGGAAGCAGTTAGTGACAGATCCTGAGAGGTTGAAAGACCCAGTGGAATTTGTTCAGCGCTTGTTAAATGAGAAGGACAAGCATGATAAGATCATCAACGTTGCTTTTGGCAATGACAAAACTTTCCAGAATGCTCTAAATTCATCCTTTGAGTACTTCATCAACTTAAACAACAGGTCACCTGAATTCATATCGTTGTATGTTGATGATAAACTTCGGAAAGGATTGAAAGGAGCCACAGAAGAGGATGTGGAGGTTATTCTGGACAAAGTCATGATGCTGTTTCGGTACCTCCAGGAGAAGGATGTATTTGAGAAGTACTACAAGCAGCATTTGGCGAAAAGACTATTGTCTGGCAAAACTGTTTCTGATGATGCTGAGAGGAGTATGATAGTTAAACTCAAGACAGAATGTGGGTACCAGTTCACTTCCAAATTAGAGGGCATGTTCACTGACATGAAGACCTCTCAGGACACTATGATAGACTTTTATGCCAAGAAGTCTGAGGAACTTGGCGATGGCCCAACACTTGATGTCCACATTCTTACAACTGGTTCTTGGCCAACACAGCCCTGCCCTCCCTGCAACCTTCCAACTGAAATCCTTGCAATATGTGATAAGTTCCGGACATACTACCTTGGAACTCACAGTGGCCGGAGATTGACATGGCAAACAAACAT-GGGAACAGCTGACATAAAAGCCACATTTGGGAAAGGTCAGAAGCATGAACTAAATGTATCCACTTATCAGATGTGTGTTCTCATGCTGTTTAATTCTACCGATGGGTTAACCTACAAAGACATCGAACAAGATACTGCGATACCTGCCTCGGATCTAAAGAGATGCCTTCAATCTCTTGCTTGTGTCAAGGGGAAGAATGTTCTCCGCAAGGAACCCATGAGCAAAGATATATCGGAGGATGACACATTCTACTTCAACGACAAGTTCACAAGCAAGCTTGTTAAGGTCAAGATTG-GGACAGTAGTGGCGCAAAAGGAATCTGAGCCAGAGAAACAAGAGACTCGTCAAC-GGGTTGAGGAGGACAGGAAACCTCAAATTGAGGCTGCTATCGTCAGGATTATGAAATCCAGGAGGGTCTTGGATCATAACAGCATTGTAGCTGAGGTTACCAAGCAATTGCAAGCCCGATTCATGCCGAATCCTGTTGTCATAAAGAAACGCATAGAATCTCTAATTGAGCGTGAATTCTTAGAGAGGGACAAAGCAGATAGGAAGTTATATCGCTATCTTGCATAGAAGGTCATTATGTGATTATTGATGAGCAAATGGCTTGTATTCATGTAAAA-CGGTTTCCATGACGTTTGAGTTCAGTTTTATTCGTTCCACTTTGTCCACTGAATCATAGCTACTTCTCGTTTCCCGTAGGCAAGCTGGTGTTCAGAGTTTTCCAGCTAATACTGATGTCATGTTACGAGTTGCTGCTATCTTAATATAATGGAGATGGATCGTCAAA]

[+] EMBL CB660835             [CAGGGAAGAAGAGGAACTGAAGCCTTTCTCCCCTGTCCGCCGCTGCGCCCTCCCCCTCTCTGTCCACGTTCCCCCACCCCACCTCGGCCTAAAACCCTAGCCGCCGGCGGAGCGGGACCTCACCGGCGGCGGCGATGAGCGGGGGCGGGCCGCCGAAGAAACGCAACTTCAAGATCGAGCTGTTCAAGCACCGCGTGGAGCTCGACCCCAAGTACGCGGAGCGGACATGGAAGGTCCTGGAGCACGCCATCCACGAGATCTACAACCACAACGCCAGTGGCCTCTCCTTCGAGGAGCTCTACAGGAGTGCCTACAACATGGTGCTCCACAAGTATGGTGAGAAGCTATATGATGGCCTGGAGAGAACTATGACATGGCGCTTGAAGGAAATATCAAAATCAATAGAGGCTGCACAGGGTGGTTTGTTTCTGGAGGAGCTGAATGCCAAGTGGATGGATCACAATAAGGCATTGCAGATGATCCGAGATATTCTAATGTACATGGATCGAACATATGTCCCGCAATCCCGTAGAACACCTGTTCATGAGCTTGGTTTGAATTTGTGGAGGGATCACATAATTCACTCTCCCATGATTCATAGTCGGCTGCTTGATACCCTTCTGGATCTTATTCACAGGGAGAGAATGGGTGAAATGATTAACAGAGGCCTGATGAGGAGCATAACGAAAATGTTAATGGATCCTGGTGCTGCTGTATATCAAGATGACTTTGAGAAGCCGTTTTTGGATGTTACAGCTAGCTTCTACAGTGGAGAGTCTCAGGAGTTCATTGAGTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AK072402             [                                              GCCCTCCCCCTCTCTGTCCACGTTCCCCCACCCCACCTCGGCCTAAAACCCTAGCCGCCGGCGGAGCGGGACCTCACCGGCGGCGGCGATGAGCGGGGGCGGGCCGCCGAAGAAACGCAACTTCAAGATCGAGCTGTTCAAGCACCGCGTGGAGCTCGACCCCAAGTACGCGGAGCGGACATGGAAGGTCCTGGAGCACGCCATCCACGAGATCTACAACCACAACGCCAGTGGCCTCTCCTTCGAGGAGCTCTACAGGAGTGCCTACAACATGGTGCTCCACAAGTATGGTGAGAAGCTATATGATGGCCTGGAGAGAACTATGACATGGCGCTTGAAGGAAATATCAAAATCAATAGAGGCTGCACAGGGTGGTTTGTTTCTGGAGGAGCTGAATGCCAAGTGGATGGATCACAATAAGGCATTGCAGATGATCCGAGATATTCTAATGTACATGGATCGAACATATGTCCCGCAATCCCGTAGAACACCTGTTCATGAGCTTGGTTTGAATTTGTGGAGGGATCACATAATTCACTCTCCCATGATTCATAGTCGGCTGCTTGATACCCTTCTGGATCTTATTCACAGGGAGAGAATGGGTGAAATGATTAACAGAGGCCTGATGAGGAGCATAACGAAAATGTTAATGGATCTTGGTGCTGCTGTATATCAAGATGACTTTGAGAAGCCGTTTTTGGATGTTACAGCTAGCTTCTACAGTGGAGAGTCTCAGGAGTTCATTGAGTGCTGTGACTGTGGGAACTATCTTAAGAAGTCCGAGAGACGTCTCAATGAGGAAATGGAACGTGTCTCACACTACTTGGATTCTGGCACTGAGGCAAAGATAACTAGTGTGGTTGAGAAAGAAATGATTGCCAATCACATGCATAGATTGGTTCATATGGAAAACTCAGGCCTTGTAAATATGCTTGTAGATGACAAATATGACGACTTGGCTAGGATGTACAACTTATTCCGAAGGGTTTTTGATGGGCTATCGACAATCAGAGATGTGATGACTTCATACCTAAGGGAAACAGGGAAGCAGTTAGTGACAGATCCTGAGAGGTTGAAAGACCCAGTGGAATTTGTTCAGCGCTTGTTAAATGAGAAGGACAAGCATGATAAGATCATCAACGTTGCTTTTGGCAATGACAAAACTTTCCAGAATGCTCTAAATTCATCCTTTGAGTACTTCATCAACTTAAACAACAGGTCACCTGAATTCATATCGTTGTATGTTGATGATAAACTTCGGAAAGGATTGAAAGGAGCCACAGAAGAGGATGTGGAGGTTATTCTGGACAAAGTCATGATGCTGTTTCGGTACCTCCAGGAGAAGGATGTATTTGAGAAGTACTACAAGCAGCATTTGGCGAAAAGACTATTGTCTGGCAAAACTGTTTCTGATGATGCTGAGAGGAGTATGATAGTTAAACTCAAGACAGAATGTGGGTACCAGTTCACTTCCAAATTAGAGGGCATGTTCACTGACATGAAGACCTCTCAGGACACTATGATAGACTTTTATGCCAAGAAGTCTGAGGAACTTGGCGATGGCCCAACACTTGATGTCCACATTCTTACAACTGGTTCTTGGCCAACACAGCCCTGCCCTCCCTGCAACCTTCCAACTGAAATCCTTGCAATATGTGATAAGTTCCGGACATACTACCTTGGAACTCACAGTGGCCGGAGATTGACATGGCAAACAAACAT GGGAACAGCTGACATAAAAGCCACATTTGGGAAAGGTCAGAAGCATGAACTAAATGTATCCACTTATCAGATGTGTGTTCTCATGCTGTTTAATTCTACCGATGGGTTAACCTACAAAGACATCGAACAAGATACTGCGATACCTGCCTCGGATCTAAAGAGATGCCTTCAATCTCTTGCTTGTGTCAAGGGGAAGAATGTTCTCCGCAAGGAACCCATGAGCAAAGATATATCGGAGGATGACACATTCTACTTCAACGACAAGTTCACAAGCAAGCTTGTTAAGGTCAAGATTG GGACAGTAGTGGCGCAAAAGGAATCTGAGCCAGAGAAACAAGAGACTCGTCAAC GGGTTGAGGAGGACAGGAAACCTCAAATTGAGGCTGCTATCGTCAGGATTATGAAATCCAGGAGGGTCTTGGATCATAACAGCATTGTAGCTGAGGTTACCAAGCAATTGCAAGCCCGATTCATGCCGAATCCTGTTGTCATAAAGAAACGCATAGAATCTCTAATTGAGCGTGAATTCTTAGAGAGGGACAAAGCAGATAGGAAGTTATATCGCTATCTTGCATAGAAGGTCATTATGTGATTATTGATGAGCAAATGGCTTGTATTCATGTAAAA CGGTTTCCATGACGTTTGAGTTCAGTTTTATTCGTTCCACTTTGTCCACTGAATCATAGCTACTTCTCGTTTCCCGTAGGCAAGCTGGTGTTCAGAGTTTTCCAGCTAATACTGATGTCATGTTACGAGTTGCTGCTATCTTAATATAATGGAGATGGATCGTCAAA]
[+] EMBL CB627037             [                                                                                        CTAAAACCCTAGCCGCCGGCGGAGCGGGACCTCACCGGCGGCGGCGATGAGCGGGGGCGGGCCGCCGAAGAAGCGCAACTTCAAGATCGAGCTGTTCAAGCACCGCGTGGAGCTCGACCCCAAGTACGCGGAGCGGACATGGAAGGTCCTGGAGCACGCCATCCACGAGATCTACAACCACAACGCCAGTGGCCTCTCCTTCGAGGAGCTCTACAGGAGTGCCTACAACATGGTGCTCCACAAGTATGGTGAGAAGCTATATGATGGCCTGGAGAGAACTATGACATGGCGCTTGAAGGAAATATCAAAATCAATAGAGGCTGCACAGGGTGGTTTGTTTCTGGAGGAGCTGAATGCCAAGTGGATGGATCACAATAAGGCATTGCAGATGATCCGAGATATTCTAATGTACATGGATCGAACATATGTCCCGCAATCCCGTAGAACACCTGTTCATGAGCTTGGTTTGAATTTGTGGAGGGATCACATAATTCACTCTCCCATGATTCATAGTCGGCTGCTTGATACCCTTCTGGATCTTATTCACAGGGAGAGAATGGGTGAAATGATTAACAGAGGCCTGATGAGGAGCATAACGAAAATGTTAATGGATCTTGGTGCTGCTGTATATCAAGATGACTTTGAGAAGCCGTTTTTGGATGTTACAGCTAGCTTCTACAGTGGAGAGTCTCAGGAGTTCATTGAGTGCTGTGACTGTGGGAACTATCTTAAGAAGTCCGAGAGACGTCTNCATGAGGAAATGGAACGTGTCTCACACTACTTGGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BF430795             [                                                                                                                                                                                                                                                                                                                                                               ATGGCCTGGAGAGAACTATGACATGGCGCTTGAAGGAAATATCAAAATCAATAGAGGCTGCACAGGGTGGTTTGTTTCTGGAGGAGCTGAATGCCAAGTGGATGGATCACAATAAGGCATTGCAGATGATCCGAGATATTCTAATGTACATGGATCGAACATATGTCCCGCAATCCCGTAGAACACCTGTTCATGAGCTTGGTTTGAATTTGTGGAGGGATCACATAATTCACTCTCCCATGATTCATAGTCGGCTGCTTGATACCCTTCTGGATCTTATTCACAGGGAGAGAATGGGTGAAATGATTAACAGAGGCCTGATGAGGAGCATAACGAAAATGTTAATGGATCTTGGTGCTGCTGTATATCAAGATGACTTTGAGAAGCCGTTTTTGGATGTTACAGCTAGCTTCTACAGTGGAGAGTCTCAGGAGTTCATTGAGTGCTGTGACTGTGGGAACTATCTTAAGAAGTCCGAGAGACGTCTCAATGAGGAAATGGAACGTGTCTCACACTACTTGGATGCTGGCACTGAGGCAAAGATAACTAGTGTGGTTGAGAAAGAAATGATTGCCAATCACATGCATAGATTGGTTCATATGGAAAACTCAGGCCTTGTAAATATGCTTGTAGATGACAAATATGACGACTTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CB627038             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ATAAGTTCCGGACATACTACCTTGGAACTCACAGTGGCCGGAGATTGACATGGCAAACAAACAT GGGAACAGCTGACATAAAAGCCACATTTGGGAAAGGTCAGAAGCATGAACTAAATGTATCCACTTATCAGATGTGTGTTCTCATGCTGTTTAATTCTACCGATGGGTTAACCTACAAAGACATCGAACAAGATACTGCGATACCTGCCTCGGATCTAAAGAGATGCCTTCAATCTCTTGCTTGTGTCAAGGGGAAGAATGTTCTCCGCAAGGAACCCATGAGCAAAGATATATCGGAGGATGACACATTCTACTTCAACGACAAGTTCACAAGCAAGCTTGTTAAGGTCAAGATTG GGACAGTAGTGGCGCAAAAGGAATCTGAGCCAGAGAAACAAGAGACTCGTCAAC GGGTTGAGGAGGACAGGAAACCTCAAATTGAGGCTGCTATCGTCAGGATTATGAAATCCAGGAGGGTCTTGGATCATAACAGCATTGTAGCTGAGGTTACCAAGCAATTGCAAGCCCGATTCATGCCGAATCCTGTTGTCATAAAGAAACGCATAGAATCTCTAATTGAGCGTGAATTCTTAGAGAGGGACAAAGCAGATAGGAAGTTATATCGCTATCTTGCATAGAAGGTCATTATGTGATTATTGATGAGCAAATGGCTTGTATTCATGTAAAA CGGTTTCCATGACGTTTGAGTTCAGTTTT                                                                                                                                          ]
[-] EMBL CB660836             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GACATACTACCTTGGAACTCACAGTGGCCGGAGATTGACATGGCAAACAAACATGGGGAACAGCTGACATAAAAGCCACATTTGGGAAAGGTCAGAAGCATGAACTAAATGTATCCACTTATCAGATGTGTGTTCTCATGCTGTTTAATTCTACCGATGGGTTAACCTACAAAGACATCGAACAAGATACTGCGATACCTGCCTCGGATCTAAAGAGATGCCTTCAATCTCTTGCTTGTGTCAAGGGGAAGAATGTTCTCCGCAAGGAACCCATGAGCAAAGATATATCGGAGGATGACACATTCTACTTCAACGACAAGTTCACAAGCAAGCTTGTTAAGGTCAAGATTG GGACAGTAGTGGCGCAAAAGGAATCTGAGCCAGAGAAACAAGAGACTCGTCAAC GGGTTGAGGAGGACAGGAAACCTCAAATTGAGGCTGCTATCGTCAGGATTATGAAATCCAGGAGGGTCTTGGATCATAACAGCATTGTAGCTGAGGTTACCAAGCAATTGCAAGCCCGATTCATGCCGAATCCTGTTGTCATAAAGAAACGCATAGAATCTCTAATTGAGCGTGAATTCTTAGAGAGGGACAAAGCAGATAGGAAGTTATATCGCTATCTTGCATAGAAGGTCATTATGTGATTATTGATGAGCAAAGGGCTTGTATTCATGTAAAAGCGGTTT                                                                                                                                                                 ]
[+] EMBL C28405               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ACTACCTTGGAACTCACAGTGGCCGGAGATTGACATGGCAAACAAACAT GGGAACAGCTGACATAAAAGCCACATTTGGGAAAGGTCAGAAGCATGAACTAAATGTATCCACTTATCANATGTGTGTTCTCATGCTGTTTAATTCTACCGATGGGTTAACCTACAAAGACATCGAACAAGATACTGCGATACCTGCCTCGGATCTAAAGAGATGCCTTCAATCTCTTGCTTGTGTCAAGNGGAAGAATGTTCTCCGCAAGGANCCCNTGAGCAAAGATATATCGGAGGATGACACATTCTACTTCAACGACAAGTTCACAAGCAAGCTTGTTAAGGTCAAGATTGNGGNCAGTAGTGGCGCAAAAGGAATCTGAGCCAGAG AACAAGAGACTCGTCAACGGGGTTTNGGAGGCCAGG AACCTCAAATTTNGGCTGC                                                                                                                                                                                                                                                                                                                                                                                                                        ]




>consensus_12317#0
CAGGGAAGAAGAGGAACTGAAGCCTTTCTCCCCTGTCCGCCGCTGCGCCCTCCCCCTCTC
TGTCCACGTTCCCCCACCCCACCTCGGCCTAAAACCCTAGCCGCCGGCGGAGCGGGACCT
CACCGGCGGCGGCGATGAGCGGGGGCGGGCCGCCGAAGAAACGCAACTTCAAGATCGAGC
TGTTCAAGCACCGCGTGGAGCTCGACCCCAAGTACGCGGAGCGGACATGGAAGGTCCTGG
AGCACGCCATCCACGAGATCTACAACCACAACGCCAGTGGCCTCTCCTTCGAGGAGCTCT
ACAGGAGTGCCTACAACATGGTGCTCCACAAGTATGGTGAGAAGCTATATGATGGCCTGG
AGAGAACTATGACATGGCGCTTGAAGGAAATATCAAAATCAATAGAGGCTGCACAGGGTG
GTTTGTTTCTGGAGGAGCTGAATGCCAAGTGGATGGATCACAATAAGGCATTGCAGATGA
TCCGAGATATTCTAATGTACATGGATCGAACATATGTCCCGCAATCCCGTAGAACACCTG
TTCATGAGCTTGGTTTGAATTTGTGGAGGGATCACATAATTCACTCTCCCATGATTCATA
GTCGGCTGCTTGATACCCTTCTGGATCTTATTCACAGGGAGAGAATGGGTGAAATGATTA
ACAGAGGCCTGATGAGGAGCATAACGAAAATGTTAATGGATCTTGGTGCTGCTGTATATC
AAGATGACTTTGAGAAGCCGTTTTTGGATGTTACAGCTAGCTTCTACAGTGGAGAGTCTC
AGGAGTTCATTGAGTGCTGTGACTGTGGGAACTATCTTAAGAAGTCCGAGAGACGTCTCA
ATGAGGAAATGGAACGTGTCTCACACTACTTGGATTCTGGCACTGAGGCAAAGATAACTA
GTGTGGTTGAGAAAGAAATGATTGCCAATCACATGCATAGATTGGTTCATATGGAAAACT
CAGGCCTTGTAAATATGCTTGTAGATGACAAATATGACGACTTGGCTAGGATGTACAACT
TATTCCGAAGGGTTTTTGATGGGCTATCGACAATCAGAGATGTGATGACTTCATACCTAA
GGGAAACAGGGAAGCAGTTAGTGACAGATCCTGAGAGGTTGAAAGACCCAGTGGAATTTG
TTCAGCGCTTGTTAAATGAGAAGGACAAGCATGATAAGATCATCAACGTTGCTTTTGGCA
ATGACAAAACTTTCCAGAATGCTCTAAATTCATCCTTTGAGTACTTCATCAACTTAAACA
ACAGGTCACCTGAATTCATATCGTTGTATGTTGATGATAAACTTCGGAAAGGATTGAAAG
GAGCCACAGAAGAGGATGTGGAGGTTATTCTGGACAAAGTCATGATGCTGTTTCGGTACC
TCCAGGAGAAGGATGTATTTGAGAAGTACTACAAGCAGCATTTGGCGAAAAGACTATTGT
CTGGCAAAACTGTTTCTGATGATGCTGAGAGGAGTATGATAGTTAAACTCAAGACAGAAT
GTGGGTACCAGTTCACTTCCAAATTAGAGGGCATGTTCACTGACATGAAGACCTCTCAGG
ACACTATGATAGACTTTTATGCCAAGAAGTCTGAGGAACTTGGCGATGGCCCAACACTTG
ATGTCCACATTCTTACAACTGGTTCTTGGCCAACACAGCCCTGCCCTCCCTGCAACCTTC
CAACTGAAATCCTTGCAATATGTGATAAGTTCCGGACATACTACCTTGGAACTCACAGTG
GCCGGAGATTGACATGGCAAACAAACATGGGAACAGCTGACATAAAAGCCACATTTGGGA
AAGGTCAGAAGCATGAACTAAATGTATCCACTTATCAGATGTGTGTTCTCATGCTGTTTA
ATTCTACCGATGGGTTAACCTACAAAGACATCGAACAAGATACTGCGATACCTGCCTCGG
ATCTAAAGAGATGCCTTCAATCTCTTGCTTGTGTCAAGGGGAAGAATGTTCTCCGCAAGG
AACCCATGAGCAAAGATATATCGGAGGATGACACATTCTACTTCAACGACAAGTTCACAA
GCAAGCTTGTTAAGGTCAAGATTGGGACAGTAGTGGCGCAAAAGGAATCTGAGCCAGAGA
AACAAGAGACTCGTCAACGGGTTGAGGAGGACAGGAAACCTCAAATTGAGGCTGCTATCG
TCAGGATTATGAAATCCAGGAGGGTCTTGGATCATAACAGCATTGTAGCTGAGGTTACCA
AGCAATTGCAAGCCCGATTCATGCCGAATCCTGTTGTCATAAAGAAACGCATAGAATCTC
TAATTGAGCGTGAATTCTTAGAGAGGGACAAAGCAGATAGGAAGTTATATCGCTATCTTG
CATAGAAGGTCATTATGTGATTATTGATGAGCAAATGGCTTGTATTCATGTAAAACGGTT
TCCATGACGTTTGAGTTCAGTTTTATTCGTTCCACTTTGTCCACTGAATCATAGCTACTT
CTCGTTTCCCGTAGGCAAGCTGGTGTTCAGAGTTTTCCAGCTAATACTGATGTCATGTTA
CGAGTTGCTGCTATCTTAATATAATGGAGATGGATCGTCAAA

consensusID : consensus_12317#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 573
fasta sequence 
                              [GGNGGCNTTAGATATGTCCCGGTGANGATTGCAGGGTTATTTACGANGGTACNAAAAANTTGACAGTATGGAACTCCTNGAATTAAAGAGANCCTTCATTTCTGGTTGGTCAAGGGGGAGATTTTTCCGCAAGGAACCCATGAGCAAAGATATATCGGAGGATGACACATTTTATTTCAACGACAAGTTCACAAGCAAGCTTGTTAAGTTCAAGATTGGACAGTAGTGGCGCAAAAGGAATCTGAGCCAGAGAAACAAGAGACTCGTCAACGGGTTGAGGAGGACAGGAAACCTCAAATTGAGGCTGCTATCGTCAGGATTATGAAATCCAGGAGGGTCTTGGATCATAACAGCATTGTAGCTGAGGTTACCAAGCAATTGCAAGCCCGATTCATGCCGAATCCTGTTGTCATAAAGAAACGCATAGAATCTCTAATTGAGCGTGAATTCTTAGAGAGGGACAAAGCAGATAGGAAGTTATATCGCTATCTTGCATAGAAGGTCATTATGTGATTATTGATGAGCAAATGGCTTGTATTCATGTAAAACGGTTTCCAAAAAAAAAAAAAAAAA]

[-] EMBL AA753262             [GGNGGCNTTAGATATGTCCCGGTGANGATTGCAGGGTTATTTACGANGGTACNAAAAANTTGACAGTATGGAACTCCTNGAATTAAAGAGANCCTTCATTTCTGGTTGGTCAAGGGGGAGATTTTTCCGCAAGGAACCCATGAGCAAAGATATATCGGAGGATGACACATTTTATTTCAACGACAAGTTCACAAGCAAGCTTGTTAAGTTCAAGATTGGACAGTAGTGGCGCAAAAGGAATCTGAGCCAGAGAAACAAGAGACTCGTCAACGGGTTGAGGAGGACAGGAAACCTCAAATTGAGGCTGCTATCGTCAGGATTATGAAATCCAGGAGGGTCTTGGATCATAACAGCATTGTAGCTGAGGTTACCAAGCAATTGCAAGCCCGATTCATGCCGAATCCTGTTGTCATAAAGAAACGCATAGAATCTCTAATTGAGCGTGAATTCTTAGAGAGGGACAAAGCAGATAGGAAGTTATATCGCTATCTTGCATAGAAGGTCATTATGTGATTATTGATGAGCAAATGGCTTGTATTCATGTAAAACGGTTTCCAAAAAAAAAAAAAAAAA]




>consensus_12317#1
GGNGGCNTTAGATATGTCCCGGTGANGATTGCAGGGTTATTTACGANGGTACNAAAAANT
TGACAGTATGGAACTCCTNGAATTAAAGAGANCCTTCATTTCTGGTTGGTCAAGGGGGAG
ATTTTTCCGCAAGGAACCCATGAGCAAAGATATATCGGAGGATGACACATTTTATTTCAA
CGACAAGTTCACAAGCAAGCTTGTTAAGTTCAAGATTGGACAGTAGTGGCGCAAAAGGAA
TCTGAGCCAGAGAAACAAGAGACTCGTCAACGGGTTGAGGAGGACAGGAAACCTCAAATT
GAGGCTGCTATCGTCAGGATTATGAAATCCAGGAGGGTCTTGGATCATAACAGCATTGTA
GCTGAGGTTACCAAGCAATTGCAAGCCCGATTCATGCCGAATCCTGTTGTCATAAAGAAA
CGCATAGAATCTCTAATTGAGCGTGAATTCTTAGAGAGGGACAAAGCAGATAGGAAGTTA
TATCGCTATCTTGCATAGAAGGTCATTATGTGATTATTGATGAGCAAATGGCTTGTATTC
ATGTAAAACGGTTTCCAAAAAAAAAAAAAAAAA

consensusID : consensus_12317#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 437
fasta sequence 
                              [ATGACACATTCTACTTCAACGACAAGTTCACAAGCAAGCTTGTTAAGGTCAAGATTGGGACNGTAGTGGCGCAAAAGGAATCTGAGCCAGAGAAACAAGAGACTCGTCAACGGGTTGAGGAGGACAGGAAACCTCAAATTGAGGCTGCTATCGTCAGGATTATGAAATCCAGGAGGGTCTTGGATCATAACAGCATTGTAGCTGAGGTTACCAAGCAATTGCAAGCCCGATTCATGCCGAATCCTGTTGTCATAAAGAAACGCATAGAAT-TCTAATTGAGCGTGAATTCTTAGAGAGGGACAAAGCAGATAGGAAGTTATATCGCTATCTTGCATAGAAGGTCATTATGTGATTATTGATGAGCAAATGGCTTGTATTCATGTAAAACGGTTTCCATGACGTTTGAGTTCAGTTTTATTCGTTCCA----AAAAAAAAAAA]

[+] EMBL AU085825             [ATGACACATTCTACTTCAACGACAAGTTCACAAGCAAGCTTGTTAAGGTCAAGATTGGGACNGTAGTGGCGCAAAAGGAATCTGAGCCAGAGAAACAAGAGACTCGTCAACGGGTTGAGGAGGACAGGAAACCTCAAATTGAGGCTGCTATCGTCAGGATTATGAAATCCAGGAGGGTCTTGGATCATAACAGCATTGTAGCTGAGGTTACCAAGCAATTGCAAGCCCGATTCATGCCGAATCCTGTTGTCATAAAGAAACGCATAGAAT TCTAATTGAGCGTGAATTCTTAGAGAGGGACAAAGCAGATAGGAAGTTATATCGCTATCTTGCATAGAAGGTCATTATGTGATTATTGATGAGCAAATGGCTTGTATTCATGTAAAACGGTTTCCATGACGTTTGAGTTCAGTTTTATTCGTTCCA    AAAAAAAAAAA]
[+] EMBL BM420685             [                ccgCGACAAGTTCACAAGCAAGCTTGTTAAGGTCAAGATTGGGACAGTAGTGGCGCAAAAGGAATCTGAGCCAGAGAAACAAGAGACTCGTCAACGGGTTGAGGAGGACAGGAAACCTCAAATTGAGGCTGCTATCGTCAGGATTATGAAATCCAGGAGGGTCTTGGATCATAACAGCATTGTAGCTGAGGTTACCAAGCCATTGCAAGCCCGATTCATGCCGAATCCTGTTGTCATAAAGAAACGCATAGAATCTCTAATTGAGCGTGAATTCTTAGAGAGGGACCAAGCAGATAGGAAGTTATATCGCTATCTTGCATAGAAGGTCATTATGTGATTATTGATGAGC AATGGCTTGTATTCATGTAAAACGGTTTCCATGACGTTTGAGTTCAGTTTTATTCGTTCCACTTTAAAAAAAAAA ]




>consensus_12317#2
ATGACACATTCTACTTCAACGACAAGTTCACAAGCAAGCTTGTTAAGGTCAAGATTGGGA
CNGTAGTGGCGCAAAAGGAATCTGAGCCAGAGAAACAAGAGACTCGTCAACGGGTTGAGG
AGGACAGGAAACCTCAAATTGAGGCTGCTATCGTCAGGATTATGAAATCCAGGAGGGTCT
TGGATCATAACAGCATTGTAGCTGAGGTTACCAAGCAATTGCAAGCCCGATTCATGCCGA
ATCCTGTTGTCATAAAGAAACGCATAGAATTCTAATTGAGCGTGAATTCTTAGAGAGGGA
CAAAGCAGATAGGAAGTTATATCGCTATCTTGCATAGAAGGTCATTATGTGATTATTGAT
GAGCAAATGGCTTGTATTCATGTAAAACGGTTTCCATGACGTTTGAGTTCAGTTTTATTC
GTTCCAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12317#0      CAGGGAAGAAGAGGAACTGAAGCCTTTCTCCCCTGTCCGCCGCTGCGCCCTCCCCCTCTC 60
consensus_12317#2      ------------------------------------------------------------
consensus_12317#1      ------------------------------------------------------------
                                                                                   

consensus_12317#0      TGTCCACGTTCCCCCACCCCACCTCGGCCTAAAACCCTAGCCGCCGGCGGAGCGGGACCT 120
consensus_12317#2      ------------------------------------------------------------
consensus_12317#1      ------------------------------------------------------------
                                                                                   

consensus_12317#0      CACCGGCGGCGGCGATGAGCGGGGGCGGGCCGCCGAAGAAACGCAACTTCAAGATCGAGC 180
consensus_12317#2      ------------------------------------------------------------
consensus_12317#1      ------------------------------------------------------------
                                                                                   

consensus_12317#0      TGTTCAAGCACCGCGTGGAGCTCGACCCCAAGTACGCGGAGCGGACATGGAAGGTCCTGG 240
consensus_12317#2      ------------------------------------------------------------
consensus_12317#1      ------------------------------------------------------------
                                                                                   

consensus_12317#0      AGCACGCCATCCACGAGATCTACAACCACAACGCCAGTGGCCTCTCCTTCGAGGAGCTCT 300
consensus_12317#2      ------------------------------------------------------------
consensus_12317#1      ------------------------------------------------------------
                                                                                   

consensus_12317#0      ACAGGAGTGCCTACAACATGGTGCTCCACAAGTATGGTGAGAAGCTATATGATGGCCTGG 360
consensus_12317#2      ------------------------------------------------------------
consensus_12317#1      ------------------------------------------------------------
                                                                                   

consensus_12317#0      AGAGAACTATGACATGGCGCTTGAAGGAAATATCAAAATCAATAGAGGCTGCACAGGGTG 420
consensus_12317#2      ------------------------------------------------------------
consensus_12317#1      ------------------------------------------------------------
                                                                                   

consensus_12317#0      GTTTGTTTCTGGAGGAGCTGAATGCCAAGTGGATGGATCACAATAAGGCATTGCAGATGA 480
consensus_12317#2      ------------------------------------------------------------
consensus_12317#1      ------------------------------------------------------------
                                                                                   

consensus_12317#0      TCCGAGATATTCTAATGTACATGGATCGAACATATGTCCCGCAATCCCGTAGAACACCTG 540
consensus_12317#2      ------------------------------------------------------------
consensus_12317#1      ------------------------------------------------------------
                                                                                   

consensus_12317#0      TTCATGAGCTTGGTTTGAATTTGTGGAGGGATCACATAATTCACTCTCCCATGATTCATA 600
consensus_12317#2      ------------------------------------------------------------
consensus_12317#1      ------------------------------------------------------------
                                                                                   

consensus_12317#0      GTCGGCTGCTTGATACCCTTCTGGATCTTATTCACAGGGAGAGAATGGGTGAAATGATTA 660
consensus_12317#2      ------------------------------------------------------------
consensus_12317#1      ------------------------------------------------------------
                                                                                   

consensus_12317#0      ACAGAGGCCTGATGAGGAGCATAACGAAAATGTTAATGGATCTTGGTGCTGCTGTATATC 720
consensus_12317#2      ------------------------------------------------------------
consensus_12317#1      ------------------------------------------------------------
                                                                                   

consensus_12317#0      AAGATGACTTTGAGAAGCCGTTTTTGGATGTTACAGCTAGCTTCTACAGTGGAGAGTCTC 780
consensus_12317#2      ------------------------------------------------------------
consensus_12317#1      ------------------------------------------------------------
                                                                                   

consensus_12317#0      AGGAGTTCATTGAGTGCTGTGACTGTGGGAACTATCTTAAGAAGTCCGAGAGACGTCTCA 840
consensus_12317#2      ------------------------------------------------------------
consensus_12317#1      ------------------------------------------------------------
                                                                                   

consensus_12317#0      ATGAGGAAATGGAACGTGTCTCACACTACTTGGATTCTGGCACTGAGGCAAAGATAACTA 900
consensus_12317#2      ------------------------------------------------------------
consensus_12317#1      ------------------------------------------------------------
                                                                                   

consensus_12317#0      GTGTGGTTGAGAAAGAAATGATTGCCAATCACATGCATAGATTGGTTCATATGGAAAACT 960
consensus_12317#2      ------------------------------------------------------------
consensus_12317#1      ------------------------------------------------------------
                                                                                   

consensus_12317#0      CAGGCCTTGTAAATATGCTTGTAGATGACAAATATGACGACTTGGCTAGGATGTACAACT 1020
consensus_12317#2      ------------------------------------------------------------
consensus_12317#1      ------------------------------------------------------------
                                                                                   

consensus_12317#0      TATTCCGAAGGGTTTTTGATGGGCTATCGACAATCAGAGATGTGATGACTTCATACCTAA 1080
consensus_12317#2      ------------------------------------------------------------
consensus_12317#1      ------------------------------------------------------------
                                                                                   

consensus_12317#0      GGGAAACAGGGAAGCAGTTAGTGACAGATCCTGAGAGGTTGAAAGACCCAGTGGAATTTG 1140
consensus_12317#2      ------------------------------------------------------------
consensus_12317#1      ------------------------------------------------------------
                                                                                   

consensus_12317#0      TTCAGCGCTTGTTAAATGAGAAGGACAAGCATGATAAGATCATCAACGTTGCTTTTGGCA 1200
consensus_12317#2      ------------------------------------------------------------
consensus_12317#1      ------------------------------------------------------------
                                                                                   

consensus_12317#0      ATGACAAAACTTTCCAGAATGCTCTAAATTCATCCTTTGAGTACTTCATCAACTTAAACA 1260
consensus_12317#2      ------------------------------------------------------------
consensus_12317#1      ------------------------------------------------------------
                                                                                   

consensus_12317#0      ACAGGTCACCTGAATTCATATCGTTGTATGTTGATGATAAACTTCGGAAAGGATTGAAAG 1320
consensus_12317#2      ------------------------------------------------------------
consensus_12317#1      ------------------------------------------------------------
                                                                                   

consensus_12317#0      GAGCCACAGAAGAGGATGTGGAGGTTATTCTGGACAAAGTCATGATGCTGTTTCGGTACC 1380
consensus_12317#2      ------------------------------------------------------------
consensus_12317#1      ------------------------------------------------------------
                                                                                   

consensus_12317#0      TCCAGGAGAAGGATGTATTTGAGAAGTACTACAAGCAGCATTTGGCGAAAAGACTATTGT 1440
consensus_12317#2      ------------------------------------------------------------
consensus_12317#1      ------------------------------------------------------------
                                                                                   

consensus_12317#0      CTGGCAAAACTGTTTCTGATGATGCTGAGAGGAGTATGATAGTTAAACTCAAGACAGAAT 1500
consensus_12317#2      ------------------------------------------------------------
consensus_12317#1      ------------------------------------------------------------
                                                                                   

consensus_12317#0      GTGGGTACCAGTTCACTTCCAAATTAGAGGGCATGTTCACTGACATGAAGACCTCTCAGG 1560
consensus_12317#2      ------------------------------------------------------------
consensus_12317#1      ------------------------------------------------------------
                                                                                   

consensus_12317#0      ACACTATGATAGACTTTTATGCCAAGAAGTCTGAGGAACTTGGCGATGGCCCAACACTTG 1620
consensus_12317#2      ------------------------------------------------------------
consensus_12317#1      ------------------------------------------------------------
                                                                                   

consensus_12317#0      ATGTCCACATTCTTACAACTGGTTCTTGGCCAACACAGCCCTGCCCTCCCTGCAACCTTC 1680
consensus_12317#2      ------------------------------------------------------------
consensus_12317#1      ------------------------------------------------------------
                                                                                   

consensus_12317#0      CAACTGAAATCCTTGCAATATGTGATAAGTTCCGGACATACTACCTTGGAACTCACAGTG 1740
consensus_12317#2      ------------------------------------------------------------
consensus_12317#1      ------------------------------------------------------------
                                                                                   

consensus_12317#0      GCCGGAGATTGACATGGCAAACAAACATGGGAACAGCTGACATAAAAGCCACATTTGGGA 1800
consensus_12317#2      ------------------------------------------------------------
consensus_12317#1      ------------------------------------------------------------
                                                                                   

consensus_12317#0      AAGGTCAGAAGCATGAACTAAATGTATCCACTTATCAGATGTGTGTTCTCATGCTGTTTA 1860
consensus_12317#2      ------------------------------------------------------------
consensus_12317#1      ---------------------------------------GGNGGCNTTAGATATGTCCCG 21
                                                                                   

consensus_12317#0      ATTCTACCGATGGGTTAACCTACAAAGACATCGAACAAGATACTGCGATACCTGCCTCGG 1920
consensus_12317#2      ------------------------------------------------------------
consensus_12317#1      GTGANGATTGCAGGGTTATTTACGANGGTACNAAAAANTTGACAGTATGGAACTCCTNGA 81
                                                                                   

consensus_12317#0      ATCTAAAGAGATGCCTTCAATCTCTTGCTTGTGTCAAGGGGAAGAATGTTCTCCGCAAGG 1980
consensus_12317#2      ------------------------------------------------------------
consensus_12317#1      AT-TAAAGAGAN-CCTTCA--TTTCTGGTTG-GTCAAGGGGGAGAT--TTTTCCGCAAGG 134
                                                                                   

consensus_12317#0      AACCCATGAGCAAAGATATATCGGAGGATGACACATTCTACTTCAACGACAAGTTCACAA 2040
consensus_12317#2      ---------------------------ATGACACATTCTACTTCAACGACAAGTTCACAA 33
consensus_12317#1      AACCCATGAGCAAAGATATATCGGAGGATGACACATTTTATTTCAACGACAAGTTCACAA 194
                                                  ********** ** *******************

consensus_12317#0      GCAAGCTTGTTAAGGTCAAGATTGGGACAGTAGTGGCGCAAAAGGAATCTGAGCCAGAGA 2100
consensus_12317#2      GCAAGCTTGTTAAGGTCAAGATTGGGACNGTAGTGGCGCAAAAGGAATCTGAGCCAGAGA 93
consensus_12317#1      GCAAGCTTGTTAAGTTCAAGATTGG-ACAGTAGTGGCGCAAAAGGAATCTGAGCCAGAGA 253
                       ************** ********** ** *******************************

consensus_12317#0      AACAAGAGACTCGTCAACGGGTTGAGGAGGACAGGAAACCTCAAATTGAGGCTGCTATCG 2160
consensus_12317#2      AACAAGAGACTCGTCAACGGGTTGAGGAGGACAGGAAACCTCAAATTGAGGCTGCTATCG 153
consensus_12317#1      AACAAGAGACTCGTCAACGGGTTGAGGAGGACAGGAAACCTCAAATTGAGGCTGCTATCG 313
                       ************************************************************

consensus_12317#0      TCAGGATTATGAAATCCAGGAGGGTCTTGGATCATAACAGCATTGTAGCTGAGGTTACCA 2220
consensus_12317#2      TCAGGATTATGAAATCCAGGAGGGTCTTGGATCATAACAGCATTGTAGCTGAGGTTACCA 213
consensus_12317#1      TCAGGATTATGAAATCCAGGAGGGTCTTGGATCATAACAGCATTGTAGCTGAGGTTACCA 373
                       ************************************************************

consensus_12317#0      AGCAATTGCAAGCCCGATTCATGCCGAATCCTGTTGTCATAAAGAAACGCATAGAATCTC 2280
consensus_12317#2      AGCAATTGCAAGCCCGATTCATGCCGAATCCTGTTGTCATAAAGAAACGCATAGAAT-TC 272
consensus_12317#1      AGCAATTGCAAGCCCGATTCATGCCGAATCCTGTTGTCATAAAGAAACGCATAGAATCTC 433
                       ********************************************************* **

consensus_12317#0      TAATTGAGCGTGAATTCTTAGAGAGGGACAAAGCAGATAGGAAGTTATATCGCTATCTTG 2340
consensus_12317#2      TAATTGAGCGTGAATTCTTAGAGAGGGACAAAGCAGATAGGAAGTTATATCGCTATCTTG 332
consensus_12317#1      TAATTGAGCGTGAATTCTTAGAGAGGGACAAAGCAGATAGGAAGTTATATCGCTATCTTG 493
                       ************************************************************

consensus_12317#0      CATAGAAGGTCATTATGTGATTATTGATGAGCAAATGGCTTGTATTCATGTAAAACGGTT 2400
consensus_12317#2      CATAGAAGGTCATTATGTGATTATTGATGAGCAAATGGCTTGTATTCATGTAAAACGGTT 392
consensus_12317#1      CATAGAAGGTCATTATGTGATTATTGATGAGCAAATGGCTTGTATTCATGTAAAACGGTT 553
                       ************************************************************

consensus_12317#0      TCCATGACGTTTGAGTTCAGTTTTATTCGTTCCACTTTGTCCACTGAATCATAGCTACTT 2460
consensus_12317#2      TCCATGACGTTTGAGTTCAGTTTTATTCGTTCCAAAAAAAAAAAA--------------- 437
consensus_12317#1      TCCAAAAAAAAAAAAAAAAA---------------------------------------- 573
                       ****  *      *    *                                         

consensus_12317#0      CTCGTTTCCCGTAGGCAAGCTGGTGTTCAGAGTTTTCCAGCTAATACTGATGTCATGTTA 2520
consensus_12317#2      ------------------------------------------------------------
consensus_12317#1      ------------------------------------------------------------
                                                                                   

consensus_12317#0      CGAGTTGCTGCTATCTTAATATAATGGAGATGGATCGTCAAA 2562
consensus_12317#2      ------------------------------------------
consensus_12317#1      ------------------------------------------


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)