cluster # 12369

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Oryza sativa
cluster # 12369 cluster # 12369 Sequences # 10 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12369#0 length = 2276 sequences # 7

consensus_12369#1 length = 610 sequences # 2
consensus_12369#2 length = 432 sequences # 1

consensusID : consensus_12369#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 2276
fasta sequence

                              [CGTGCGCAGGAGGAGAAAATTGCGGAGGGGATCCACAGTTCCAGCCGCGTGTGACGGCGGCGTGCGGTTGCCGCGGCGTGCTGCTCGAGCCGCTTTACGACTGATCCGAGCGGCTTTTTCCGGCGATCATGGCGGACGCGCCCGCCACCGGCGGCGGATTCCCCGCGCAGGACTACCCCACCATCGACCCCACCTCGTTCGACGTGGTCCTCTGCGGCACCGGCCTCCCGGAGTCCGTCCTCGCCGCCGCCTGCGCCGCCGCCGGGAAGACGGTCCTCCACGTCGACCCCAACCCTTTCTACGGCTCCCTCTTCTCCTCCCTCCCTCTCCCTTCCCTCCCCTCCTTCCTCTCCCCCTCCCCCTCCGACGACCCCGCCCCCTCCCCTTCCCCCTCCTCCGCCGCCGCCGTCGATCTCCGCCGCCGCAGCCCGTACTCGGAGGTGGAGACCTCGGGGGCGGTGCCCGAGCCGTCCAGGCGCTTCACCGCCGACCTG-GTGGGCCCCAGGCTGCTCTACTGCGCCGACGAGGCCGTCGACCTCCTCCTCAGGTCAGGGGGAAGCCACCATGTGGAGTTCAAGAGCGTGGAGGGGGGAACCCTCCTCTACTGGGACGGCGATCTCTACCCGGTGCCGGACTCGAGGCAGGCCATCTTCAAGGACACCACCCTCCAGCTCAGGGAGAAGAACCTACTCTTCAGGTTCTTCAAGCTTGTGCAGGCCCACATTGCCGCGTCGGCTGCCGGCGCCGCCGCGGCGGGGGAAGGCGAGGCCTCCGGTAGGCTGCCCGATGAGGACCTGGACCTCCCCTTCGTCGAATTCCTCAAGAGGCAGAATCTTTCGCCCAAGATGAGAGCGGTTGTCTTGTATGCAATTGCCATGGCGGATTATGATCAGGATGGTGTGGAGTCTTGTGAGAGGTTGTTAACAACGAGAGAGGGAGTCAAGACAATTGCTCTTTACTCCTCATCTATTGGGAGGTTTGCTAATGCAGAGGGGGCTTTCATTTATCCTATGTATGGGCATGGTGAGCTGCATCAAGCTTTCTGCCGCTGTGCTGCTGTTAAAGGTATTGCGAATGCCAGCCACAGCACTTCTTGTTGATGAGGAAAAAAAGCGTTATGTAGGTATCAGATTGGCATCTGGTCAGGATATTTTGTGCCAACAGTTGATACTCGATCCATCATATGAAATTCCTTCCTTGGATATGCCAAGTGATGCACCAGTATCAAATTTGCCAAGAAAAGTTGCTAGGGGAATATGCATAATCAGCAGCTCTGTGAGACAAGATACATCAAATGTTCTGGTTGTTTTCCCCCCAAAGTCACTAGAAGAGGAGCAAATTACTGCTGTTCGGGTGCTTCAGTTGAGCAGCAATTTAGCAGTATGCCCTCCTGGAATGTTCATGGCATATCTCTCTACTCCCTGTACTGATGCCTTCACTGGAAAGAAATGCATCAGCAAAGCAATAGATGCTCTTTTCTCAACTAAGGTTTCTAATGATTTGGAAGATCATTTGGAGAAAAACAGTGAAGAAAATAAGGAGAGTGTGAAGCCAACCCTACTCTGGAGCTGTGTGTATGTACAAGAGATTATACAGGGAACATCTGGTACTGCATTGTCATGCCCCATACCTGATGAAAATATGGACTACAGGAGTATACTTGAATCAACAAAAATGCTGTTCACTGATATTTGTCCTAATGAAGAGTTCCTGCCTAGAAATTCAGCTCCCAAATATGCTTCTGATAATGACTCTGATTCTGCAGAGTAAATCCAAACTTGCAAAGGGCTTTGTATTCTACATGACAGGGTTATCGTTGAAGATATCTGTTCCATATTACAGTGTTCCCCAAAGTCACGGTAAGAAATATTGCAGCAAGGGGGAGCCCTTTACGTTGGTGAGATTTGCCAGGTTTCTCTTTGACTAGATTGCAGATGCCTACATTGTTCCATCATTGGTACGACATATTATGATACTGGTAAAACACTCAAGAGAGAGCGATGCAGATGTCCTTGGCATTTTGACATTTGGAGAACATCATACCACATGAACCGCTTAGTGTGATTACTACATCCATATGGTTCTCTGAATTCTATGCTGAATTTGTTGGCACATAGGAGTACTGTACTACATAGGAAGGATACTGCTGAGTTCTATGCTAAATCTGTGTATTTTTGGTGGGCTGCCTGAATCATTGTACAAGCGAACGAC-AGAAATGGATATCAAATGAGGTCCCTCCGAGAGGGAGTTGCATTACATGCATCCTTATCGAAAAA]

[+] EMBL AK067610             [CGTGCGCAGGAGGAGAAAATTGCGGAGGGGATCCACAGTTCCAGCCGCGTGTGACGGCGGCGTGCGGTTGCCGCGGCGTGCTGCTCGAGCCGCTTTACGACTGATCCGAGCGGCTTTTTCCGGCGATCATGGCGGACGCGCCCGCCACCGGCGGCGGATTCCCCGCGCAGGACTACCCCACCATCGACCCCACCTCGTTCGACGTGGTCCTCTGCGGCACCGGCCTCCCGGAGTCCGTCCTCGCCGCCGCCTGCGCCGCCGCCGGGAAGACGGTCCTCCACGTCGACCCCAACCCTTTCTACGGCTCCCTCTTCTCCTCCCTCCCTCTCCCTTCCCTCCCCTCCTTCCTCTCCCCCTCCCCCTCCGACGACCCCGCCCCCTCCCCTTCCCCCTCCTCCGCCGCCGCCGTCGATCTCCGCCGCCGCAGCCCGTACTCGGAGGTGGAGACCTCGGGGGCGGTGCCCGAGCCGTCCAGGCGCTTCACCGCCGACCTG GTGGGCCCCAGGCTGCTCTACTGCGCCGACGAGGCCGTCGACCTCCTCCTCAGGTCAGGGGGAAGCCACCATGTGGAGTTCAAGAGCGTGGAGGGGGGAACCCTCCTCTACTGGGACGGCGATCTCTACCCGGTGCCGGACTCGAGGCAGGCCATCTTCAAGGACACCACCCTCCAGCTCAGGGAGAAGAACCTACTCTTCAGGTTCTTCAAGCTTGTGCAGGCCCACATTGCCGCGTCGGCTGCCGGCGCCGCCGCGGCGGGGGAAGGCGAGGCCTCCGGTAGGCTGCCCGATGAGGACCTGGACCTCCCCTTCGTCGAATTCCTCAAGAGGCAGAATCTTTCGCCCAAGATGAGAGCGGTTGTCTTGTATGCAATTGCCATGGCGGATTATGATCAGGATGGTGTGGAGTCTTGTGAGAGGTTGTTAACAACGAGAGAGGGAGTCAAGACAATTGCTCTTTACTCCTCATCTATTGGGAGGTTTGCTAATGCAGAGGGGGCTTTCATTTATCCTATGTATGGGCATGGTGAGCTGCATCAAGCTTTCTGCCGCTGTGCTGCTGTTAAAGGTATTGCGAATGCCAGCCACAGCACTTCTTGTTGATGAGGAAAAAAAGCGTTATGTAGGTATCAGATTGGCATCTGGTCAGGATATTTTGTGCCAACAGTTGATACTCGATCCATCATATGAAATTCCTTCCTTGGATATGCCAAGTGATGCACCAGTATCAAATTTGCCAAGAAAAGTTGCTAGGGGAATATGCATAATCAGCAGCTCTGTGAGACAAGATACATCAAATGTTCTGGTTGTTTTCCCCCCAAAGTCACTAGAAGAGGAGCAAATTACTGCTGTTCGGGTGCTTCAGTTGAGCAGCAATTTAGCAGTATGCCCTCCTGGAATGTTCATGGCATATCTCTCTACTCCCTGTACTGATGCCTTCACTGGAAAGAAATGCATCAGCAAAGCAATAGATGCTCTTTTCTCAACTAAGGTTTCTAATGATTTGGAAGATCATTTGGAGAAAAACAGTGAAGAAAATAAGGAGAGTGTGAAGCCAACCCTACTCTGGAGCTGTGTGTATGTACAAGAGATTATACAGGGAACATCTGGTACTGCATTGTCATGCCCCATACCTGATGAAAATATGGACTACAGGAGTATACTTGAATCAACAAAAATGCTGTTCACTGATATTTGTCCTAATGAAGAGTTCCTGCCTAGAAATTCAGCTCCCAAATATGCTTCTGATAATGACTCTGATTCTGCAGAGTAAATCCAAACTTGCAAAGGGCTTTGTATTCTACATGACAGGGTTATCGTTGAAGATATCTGTTCCATATTACAGTGTTCCCCAAAGTCACGGTAAGAAATATTGCAGCAAGGGGGAGCCCTTTACGTTGGTGAGATTTGCCAGGTTTCTCTTTGACTAGATTGCAGATGCCTACATTGTTCCATCATTGGTACGACATATTATGATACTGGTAAAACACTCAAGAGAGAGCGATGCAGATGTCCTTGGCATTTTGACATTTGGAGAACATCATACCACATGAACCGCTTAGTGTGATTACTACATCCATATGGTTCTCTGAATTCTATGCTGAATTTGTTGGCACATAGGAGTACTGTACTACATAGGAAGGATACTGCTGAGTTCTATGCTAAATCTGTGTATTTTTGGTGGGCTGCCTGAATCATTGTACAAGCGAACGAC AGAAATGGATATCAAATGAGGTCCCTCCGAGAGG                               ]
[+] EMBL CB684875             [                                CCACCGTTCCAGCCGCGTGTGACGGCGGCGTGCGGTTGCCGCGGCGTGCTGCTCGAGCCGTTTTACGACTGATCCGAGCGGCTTTTTCCGGCGATCATGGCGGACGCGCCCGCCACCGGCGGCGGATTCCCCGCGCAGGACTACCCCACCATCGACCCCACCTCGTTCGACGTGGTCCTCTGCGGCACCGGCCTCCCGGAGTCCGTCCTCGCCGCCGCCTGCGCCGCCGCCGGGAAGACGGTCCTCCACGTCGACCCCAACCCTTTCTACGGCTCCCTCTTCTCCTCCCTCCCTCTCCCTTCCCTCCCCTCCTTCCTCTCCCCCTCCCCCTCCGACGACCCCGCCCCCTCCCCTTCCCCCTCCTCCGCCGCCGCCGTCGATCTCCGCCGCCGCAGCCCGTACTCCGAGGTGGAGACCTCGGGGGCGGTGCCCGAGCCGTCCAGGCGCTTCACCGCCGACCTGTTTGGGCCCCAGGCTGCTCTACTGCGCCGACGAGGCCGTCGACCTCCTCCTCACGTCAGGGGGAAGCCTCCATGTGGAGATCATGAGCGTGGAGGGGGGAACCCTCCTCTACTGGGACGGCGATCTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL OSR1910A             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ccgGCAAATTACTGCTGTTCGGGTGCTTCAGTTGAGCAGCAATTTAGCAGTATGCCCTCCTGGAATGTTCATGGCATATCTCTCTACTCCCTGTACTGATGCCTTCACTGGAAAGAAATGCATCAGCAAAGCANTAGATGCTCTTTTCTCAACTAAGGTTTCTAATGATTTGGAAGATCATTTGGAGAAAAACAGTTAAGAAAATAAGGAGAGTGTGAAGCCAACCCTACTCTGGAGCTGTGTGTATGTACAAGAGATTATACAGGGAACATCTGGTACTGCATTGTCATGCCCCATACCTGATGAAAATATGGACTACAGGAGTATACTTGAATCAACAAAAATGCTGTTCACTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CB684876             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ATTTGGAAGATCATTTGGAGAAAAACAGTGAAGAAAATAAGGAGAGTGTGAAGCCAACCCTACTCTGGAGCTGTGTGTATGTACAAGAGATTATACAGGGAACATCTGGTACTGCATTGTCATGCCCCATACCTGATGAAAATATGGACTACAGGAGTATACTTGAATCAACAAAAATGCTGTTCACTGATATTTGTCCTAATGAAGAGTTCCTGCCTAGAAATTCAGCTCCCAAATATGCTTTTGATAATGACTCTGATTCTGCAGAGTAAATCCAAACTTGCAAAGGGCTTTGTATTCTACATGACAGGGTTATCGTTGAAGATATCTGTTCCATATTACAGTGTTCCCCAAAGTCACGGTAAGAAATATTGCAGCAAGGGGGAGCCCTTTACGTTGGTGAGATTTGCCAGGTTTCTCTTTGACTAGATTGCAGATGCCTACATTGTTCCATCATTGGTACGACATATTATGATGGTGGTAAAACACTCAAGAGAGAGCGATGCAGATGTCCTTGGCATTTTGACATTTGGAGAACATCATCCCACATGACCCGGTTAGTGTGATTACTACATCCATATGGTTCTGGGAATTTTATGCTGAATTTGTTGGCCCATAGGAGTGGTGTAGTCCATAGGAAGGATCGTGATGAGTTGTATGGTAAATTTGTGTATTTTTGGGGGGAGCCCTGAATCATTGTACAAGCGAACGGCTAGAAAGGGATATCAAAGGAGGTCCCTCTGAG                                  ]
[+] EMBL AU056915             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     AGTGAAGAAAATAAGGAGAGTGTGAAGCCAACCCTACTCTGGAGCTGTGTGTATGTACAAGAGATTATACAGGGAACATCTGGTACTGCATTGTCATGCCCCATACCTGATGAAAATATGGACTACAGGAGTATACTTGAATCAACAAAAATGCTGTTCACTGATATTTGTCCTAATGAAGAGTTCCTGCCTAGAAATTCAGCTCCCAAATATGCTTCTGATAATGACTCTGATTCTGCAGAGTAAATCCAAACTTGCAAAGGGCTTTGTATTCTACATGACAGGGTTATCGTTGAAGATATCTGTTCCATATTACAGTGTTCCCCAAAGTCACGGTAAGAAATATTGCAGCAAGGGGGAGCCCTTTACGTTGGTGAGATTTGCCAGGTTTCTCTTTGACTAGATTGCAGATGCCTACATTGTTCCATCATTGGTACGACATATTATGATACTGGTAAAACACTCAAGAGAGAGCGATGCAGATGTCCTTGGCATTTTGACATTTGGAGAACATCATACCACATGAACCGCTTAGTGTGATTACTACATCCATATGGTTCTCTGAATTCTATGCTGAATTTGTTGGCACATAGGAGTACTGTACTACATAGGAAGGATACTGCTGAGTTCTATGCTAAATCTGTGTATTTNTGGTGGGCTGCCTGAATCATTGTACAAGCGAACGAC AGANATG                                                          ]
[+] EMBL CF318513             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ctgaAGGAGTATACTTGAATTTTC AAAATGCTGTTCACTGATATTTGTCCTAATGAAGAGTTCCTGCCTAGAAATTCAGCTCCCAAATATGCTTCTGATAATGACTCTGATTCTGCAGAGTAAATCCAAACTTGCAAAGGGCTTTGTATTCTACATGACAGGGTTATCGTTGAAGATATCTGTTCCATATTACAGTGTTCCCCAAAGTCGCGGTAAGAAATATTGCAGCAAGGGGGAGCCCTTTACGTTGGTGAGATTTGCCAGGTTTCTCTTTGACTAGATTGCAGATGCCTACATTGTTCCATCATTGGTACGACATATTATGATACTGGTAAAACACTCAAGAGAGAGCGATGCAGATGTCCTTGGCATTTTGACATTTGGAGAACATCATACCACATGAACCGCTTAGTGTGATTACTACATCCATATGGTTCTCTGAATTCTATGCTGAATTTGTTGGCACATAGGAGTACTGTACTACATAGGAAGGATACTGCTGAGTTCTATGCTAA                                                                                                                   ]
[+] EMBL AU184309             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CCCCAAAGTCACGGTAAGAAATATTGCAGCAAGGGGGAGCCCTTTACGTTGGTGAGATTTGCCAGGTTTCTCTTTGACTAGATTGCAGATGCCTACATTGTTCCATCATTGGTACGACATATTATGATACTGGTAAAACACTCAAGAGAGAGCGATGCAGATGTCCTTGGCATTTTGACATTTGGAGAACATCATACCACATGAACCGCTTAGTGTGATTACTACATCCATATGGTTCTNTGAATTCTATGCTGAATTTGTTGGCACATAGGAGTACTGTACTACATAGGAAGGATACTGCTGAGTTCTATGCTAAATCTGTGTATTTTTGGTGGGCTGCCTGAATCATTGTACAAGCGAACGAC AGAAATGGATATCAAATGAGGTCCCTCCGAGAGGGAGTTGCATTACATGCATCCTTATCGAAAAA]




>consensus_12369#0
CGTGCGCAGGAGGAGAAAATTGCGGAGGGGATCCACAGTTCCAGCCGCGTGTGACGGCGG
CGTGCGGTTGCCGCGGCGTGCTGCTCGAGCCGCTTTACGACTGATCCGAGCGGCTTTTTC
CGGCGATCATGGCGGACGCGCCCGCCACCGGCGGCGGATTCCCCGCGCAGGACTACCCCA
CCATCGACCCCACCTCGTTCGACGTGGTCCTCTGCGGCACCGGCCTCCCGGAGTCCGTCC
TCGCCGCCGCCTGCGCCGCCGCCGGGAAGACGGTCCTCCACGTCGACCCCAACCCTTTCT
ACGGCTCCCTCTTCTCCTCCCTCCCTCTCCCTTCCCTCCCCTCCTTCCTCTCCCCCTCCC
CCTCCGACGACCCCGCCCCCTCCCCTTCCCCCTCCTCCGCCGCCGCCGTCGATCTCCGCC
GCCGCAGCCCGTACTCGGAGGTGGAGACCTCGGGGGCGGTGCCCGAGCCGTCCAGGCGCT
TCACCGCCGACCTGGTGGGCCCCAGGCTGCTCTACTGCGCCGACGAGGCCGTCGACCTCC
TCCTCAGGTCAGGGGGAAGCCACCATGTGGAGTTCAAGAGCGTGGAGGGGGGAACCCTCC
TCTACTGGGACGGCGATCTCTACCCGGTGCCGGACTCGAGGCAGGCCATCTTCAAGGACA
CCACCCTCCAGCTCAGGGAGAAGAACCTACTCTTCAGGTTCTTCAAGCTTGTGCAGGCCC
ACATTGCCGCGTCGGCTGCCGGCGCCGCCGCGGCGGGGGAAGGCGAGGCCTCCGGTAGGC
TGCCCGATGAGGACCTGGACCTCCCCTTCGTCGAATTCCTCAAGAGGCAGAATCTTTCGC
CCAAGATGAGAGCGGTTGTCTTGTATGCAATTGCCATGGCGGATTATGATCAGGATGGTG
TGGAGTCTTGTGAGAGGTTGTTAACAACGAGAGAGGGAGTCAAGACAATTGCTCTTTACT
CCTCATCTATTGGGAGGTTTGCTAATGCAGAGGGGGCTTTCATTTATCCTATGTATGGGC
ATGGTGAGCTGCATCAAGCTTTCTGCCGCTGTGCTGCTGTTAAAGGTATTGCGAATGCCA
GCCACAGCACTTCTTGTTGATGAGGAAAAAAAGCGTTATGTAGGTATCAGATTGGCATCT
GGTCAGGATATTTTGTGCCAACAGTTGATACTCGATCCATCATATGAAATTCCTTCCTTG
GATATGCCAAGTGATGCACCAGTATCAAATTTGCCAAGAAAAGTTGCTAGGGGAATATGC
ATAATCAGCAGCTCTGTGAGACAAGATACATCAAATGTTCTGGTTGTTTTCCCCCCAAAG
TCACTAGAAGAGGAGCAAATTACTGCTGTTCGGGTGCTTCAGTTGAGCAGCAATTTAGCA
GTATGCCCTCCTGGAATGTTCATGGCATATCTCTCTACTCCCTGTACTGATGCCTTCACT
GGAAAGAAATGCATCAGCAAAGCAATAGATGCTCTTTTCTCAACTAAGGTTTCTAATGAT
TTGGAAGATCATTTGGAGAAAAACAGTGAAGAAAATAAGGAGAGTGTGAAGCCAACCCTA
CTCTGGAGCTGTGTGTATGTACAAGAGATTATACAGGGAACATCTGGTACTGCATTGTCA
TGCCCCATACCTGATGAAAATATGGACTACAGGAGTATACTTGAATCAACAAAAATGCTG
TTCACTGATATTTGTCCTAATGAAGAGTTCCTGCCTAGAAATTCAGCTCCCAAATATGCT
TCTGATAATGACTCTGATTCTGCAGAGTAAATCCAAACTTGCAAAGGGCTTTGTATTCTA
CATGACAGGGTTATCGTTGAAGATATCTGTTCCATATTACAGTGTTCCCCAAAGTCACGG
TAAGAAATATTGCAGCAAGGGGGAGCCCTTTACGTTGGTGAGATTTGCCAGGTTTCTCTT
TGACTAGATTGCAGATGCCTACATTGTTCCATCATTGGTACGACATATTATGATACTGGT
AAAACACTCAAGAGAGAGCGATGCAGATGTCCTTGGCATTTTGACATTTGGAGAACATCA
TACCACATGAACCGCTTAGTGTGATTACTACATCCATATGGTTCTCTGAATTCTATGCTG
AATTTGTTGGCACATAGGAGTACTGTACTACATAGGAAGGATACTGCTGAGTTCTATGCT
AAATCTGTGTATTTTTGGTGGGCTGCCTGAATCATTGTACAAGCGAACGACAGAAATGGA
TATCAAATGAGGTCCCTCCGAGAGGGAGTTGCATTACATGCATCCTTATCGAAAAA

consensusID : consensus_12369#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 610
fasta sequence

                              [AGAGGACGAGACAAGGGGGAAGAGTTCCTGCCTAGAAATTCAGCTCCCAAATATGCTTCTGATAACGACT-CTGATTTTGCAGAGTAAATCCAAACTTGCAAAGGGCTTTGTATTTTACATGACAGGGTTATCGTTGAAGATATCTGTTCCATATTACAGTGTTCCCCAAAGTCACGGTAAGAAATATTGCAGCAAGGGGGAGCCCTTTACGTTGGTGAGATTTGCCAGGTTTCTCTTTGACTAGATTGCAGATGCCTACATTGTTCCATCATTGGTACGACATATTATGATACTGGTAAAACACTCAAAAGAGAGCGATGCAGATGTCCTTGGCATTTTGACATTTGGAGAACATCATACCCCATGAACCGCTTAGTGTGATTACTACATCCATATGGTTCTCTGAATTTTATGCTGAATTTGTTGGCACATAGGAGTACTGTACTACATAGGAAGGATACTGCTGAGTTCTATGCTAAATCTGGGTATTTTTGGTGGGCTGCCTGAATCATTGTACAAGCGAACGACAGAAATGGATATCAAATGAGGTCCCTCCGAGAGGGAGTTGCATTACATGCCTCCTTAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CA759933             [AGAGGACGAGACAAGGGGGAAGAGTTCCTGCCTAGAAATTCAGCTCCCAAATATGCTTCTGATAACGACT CTGATTTTGCAGAGTAAATCCAAACTTGCAAAGGGCTTTGTATTTTACATGACAGGGTTATCGTTGAAGATATCTGTTCCATATTACAGTGTTCCCCAAAGTCACGGTAAGAAATATTGCAGCAAGGGGGAGCCCTTTACGTTGGTGAGATTTGCCAGGTTTCTCTTTGACTAGATTGCAGATGCCTACATTGTTCCATCATTGGTACGACATATTATGATACTGGTAAAACACTCAAAAGAGAGCGATGCAGATGTCCTTGGCATTTTGACATTTGGAGAACATCATACCCCATGAACCGCTTAGTGTGATTACTACATCCATATGGTTCTCTGAATTTTATGCTGAATTTGTTGGCACATAGGAGTACTGTACTACATAGGAAGGATACTGCTGAGTTCTATGCTAAATCTGGGTATTTTTGGTGGGCTGCCTGAATCATTGTACAAGCGAACGACAGAAATGGATATCAAATGAGGTCCCTCCGAGAGGGAGTTGCATTACATGCCTCCTTAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU056916             [                                 AGAAATTCAGCTCCCAAATATGCTTCTGATAATGACTNCTGATTCTGCAGAGTAAATCCAAACTTNCAAAGGGCTTTGTATTCTNCATGACAGGGTTATCGTTGAAGATATCTGTTCCATATTACAGTGTTCCCCAAAGTCACGGTAAGAAATATTGCAGCAAGGGGGAGCCCTTTACGTTGGTGAGATTTGCCAGGTTTCTCTTTGACTAGATTGCAGATGCCTACATTGTTCCATCATTGGTACGACATATTATGATACTGGTAAAACACTCAAGAGAGAGCGATGCAGATGTCCTTGGCATTTTGACATTTGGAGAACATCATACCACATGAACCGCTTAGTGTGATTACTACATCCATATGGTTCTCTGAATTCTATGCTGAATTTGTTGGCACATAGGAGTACTGTACTACATAGGAAGGATACTGCTGAGTTCTATGCTAAATCTGTGTATTTTTGGTGGGCTGCCTGAATCATTGTACAAGCGAACGACAGAAATGGATATCAAATGAGGTCCCTCCGAGAGGGAGTTGCATTAAA         AAAAAAAAAAAAAA            ]




>consensus_12369#1
AGAGGACGAGACAAGGGGGAAGAGTTCCTGCCTAGAAATTCAGCTCCCAAATATGCTTCT
GATAACGACTCTGATTTTGCAGAGTAAATCCAAACTTGCAAAGGGCTTTGTATTTTACAT
GACAGGGTTATCGTTGAAGATATCTGTTCCATATTACAGTGTTCCCCAAAGTCACGGTAA
GAAATATTGCAGCAAGGGGGAGCCCTTTACGTTGGTGAGATTTGCCAGGTTTCTCTTTGA
CTAGATTGCAGATGCCTACATTGTTCCATCATTGGTACGACATATTATGATACTGGTAAA
ACACTCAAAAGAGAGCGATGCAGATGTCCTTGGCATTTTGACATTTGGAGAACATCATAC
CCCATGAACCGCTTAGTGTGATTACTACATCCATATGGTTCTCTGAATTTTATGCTGAAT
TTGTTGGCACATAGGAGTACTGTACTACATAGGAAGGATACTGCTGAGTTCTATGCTAAA
TCTGGGTATTTTTGGTGGGCTGCCTGAATCATTGTACAAGCGAACGACAGAAATGGATAT
CAAATGAGGTCCCTCCGAGAGGGAGTTGCATTACATGCCTCCTTAAAAAAAAAAAAAAAA
AAAAAAAAAA

consensusID : consensus_12369#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 432
fasta sequence

                              [TTGCAGCAAGGGGGAGCCCTTTACGTTGGTGAAATTTGCCAGGTTTTTTTTTGAATAAATTGCAGAAGCCTACATTGTTCCATCATTGGGGCGACATATTATTATATTGGTAAAACCCTCAAAAAAAAGCGATGCAAATGTCCTTGGCATTTTGACATTTGGAGAACATCATACCACATGAACCGGTTAGTGTGATTACTACACCCAAATGGTTTTTTGAATTTTAAGGTGAATTTGTTGGCACAAAGGAGTACTGTTTTACATAGAAAGGAAACTGTTGAGTTTTATGGTAAATTTGTGTATTTTTGGGGGGGGGCCTGAATCATTGTCCAAGGGAACCCCAAAAATGGATATCAAATGAGGTCCCCCCGAAAGGGGGTTGCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CF318512             [TTGCAGCAAGGGGGAGCCCTTTACGTTGGTGAAATTTGCCAGGTTTTTTTTTGAATAAATTGCAGAAGCCTACATTGTTCCATCATTGGGGCGACATATTATTATATTGGTAAAACCCTCAAAAAAAAGCGATGCAAATGTCCTTGGCATTTTGACATTTGGAGAACATCATACCACATGAACCGGTTAGTGTGATTACTACACCCAAATGGTTTTTTGAATTTTAAGGTGAATTTGTTGGCACAAAGGAGTACTGTTTTACATAGAAAGGAAACTGTTGAGTTTTATGGTAAATTTGTGTATTTTTGGGGGGGGGCCTGAATCATTGTCCAAGGGAACCCCAAAAATGGATATCAAATGAGGTCCCCCCGAAAGGGGGTTGCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_12369#2
TTGCAGCAAGGGGGAGCCCTTTACGTTGGTGAAATTTGCCAGGTTTTTTTTTGAATAAAT
TGCAGAAGCCTACATTGTTCCATCATTGGGGCGACATATTATTATATTGGTAAAACCCTC
AAAAAAAAGCGATGCAAATGTCCTTGGCATTTTGACATTTGGAGAACATCATACCACATG
AACCGGTTAGTGTGATTACTACACCCAAATGGTTTTTTGAATTTTAAGGTGAATTTGTTG
GCACAAAGGAGTACTGTTTTACATAGAAAGGAAACTGTTGAGTTTTATGGTAAATTTGTG
TATTTTTGGGGGGGGGCCTGAATCATTGTCCAAGGGAACCCCAAAAATGGATATCAAATG
AGGTCCCCCCGAAAGGGGGTTGCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12369#0      CGTGCGCAGGAGGAGAAAATTGCGGAGGGGATCCACAGTTCCAGCCGCGTGTGACGGCGG 60
consensus_12369#1      ------------------------------------------------------------
consensus_12369#2      ------------------------------------------------------------
                                                                                   

consensus_12369#0      CGTGCGGTTGCCGCGGCGTGCTGCTCGAGCCGCTTTACGACTGATCCGAGCGGCTTTTTC 120
consensus_12369#1      ------------------------------------------------------------
consensus_12369#2      ------------------------------------------------------------
                                                                                   

consensus_12369#0      CGGCGATCATGGCGGACGCGCCCGCCACCGGCGGCGGATTCCCCGCGCAGGACTACCCCA 180
consensus_12369#1      ------------------------------------------------------------
consensus_12369#2      ------------------------------------------------------------
                                                                                   

consensus_12369#0      CCATCGACCCCACCTCGTTCGACGTGGTCCTCTGCGGCACCGGCCTCCCGGAGTCCGTCC 240
consensus_12369#1      ------------------------------------------------------------
consensus_12369#2      ------------------------------------------------------------
                                                                                   

consensus_12369#0      TCGCCGCCGCCTGCGCCGCCGCCGGGAAGACGGTCCTCCACGTCGACCCCAACCCTTTCT 300
consensus_12369#1      ------------------------------------------------------------
consensus_12369#2      ------------------------------------------------------------
                                                                                   

consensus_12369#0      ACGGCTCCCTCTTCTCCTCCCTCCCTCTCCCTTCCCTCCCCTCCTTCCTCTCCCCCTCCC 360
consensus_12369#1      ------------------------------------------------------------
consensus_12369#2      ------------------------------------------------------------
                                                                                   

consensus_12369#0      CCTCCGACGACCCCGCCCCCTCCCCTTCCCCCTCCTCCGCCGCCGCCGTCGATCTCCGCC 420
consensus_12369#1      ------------------------------------------------------------
consensus_12369#2      ------------------------------------------------------------
                                                                                   

consensus_12369#0      GCCGCAGCCCGTACTCGGAGGTGGAGACCTCGGGGGCGGTGCCCGAGCCGTCCAGGCGCT 480
consensus_12369#1      ------------------------------------------------------------
consensus_12369#2      ------------------------------------------------------------
                                                                                   

consensus_12369#0      TCACCGCCGACCTGGTGGGCCCCAGGCTGCTCTACTGCGCCGACGAGGCCGTCGACCTCC 540
consensus_12369#1      ------------------------------------------------------------
consensus_12369#2      ------------------------------------------------------------
                                                                                   

consensus_12369#0      TCCTCAGGTCAGGGGGAAGCCACCATGTGGAGTTCAAGAGCGTGGAGGGGGGAACCCTCC 600
consensus_12369#1      ------------------------------------------------------------
consensus_12369#2      ------------------------------------------------------------
                                                                                   

consensus_12369#0      TCTACTGGGACGGCGATCTCTACCCGGTGCCGGACTCGAGGCAGGCCATCTTCAAGGACA 660
consensus_12369#1      ------------------------------------------------------------
consensus_12369#2      ------------------------------------------------------------
                                                                                   

consensus_12369#0      CCACCCTCCAGCTCAGGGAGAAGAACCTACTCTTCAGGTTCTTCAAGCTTGTGCAGGCCC 720
consensus_12369#1      ------------------------------------------------------------
consensus_12369#2      ------------------------------------------------------------
                                                                                   

consensus_12369#0      ACATTGCCGCGTCGGCTGCCGGCGCCGCCGCGGCGGGGGAAGGCGAGGCCTCCGGTAGGC 780
consensus_12369#1      ------------------------------------------------------------
consensus_12369#2      ------------------------------------------------------------
                                                                                   

consensus_12369#0      TGCCCGATGAGGACCTGGACCTCCCCTTCGTCGAATTCCTCAAGAGGCAGAATCTTTCGC 840
consensus_12369#1      ------------------------------------------------------------
consensus_12369#2      ------------------------------------------------------------
                                                                                   

consensus_12369#0      CCAAGATGAGAGCGGTTGTCTTGTATGCAATTGCCATGGCGGATTATGATCAGGATGGTG 900
consensus_12369#1      ------------------------------------------------------------
consensus_12369#2      ------------------------------------------------------------
                                                                                   

consensus_12369#0      TGGAGTCTTGTGAGAGGTTGTTAACAACGAGAGAGGGAGTCAAGACAATTGCTCTTTACT 960
consensus_12369#1      ------------------------------------------------------------
consensus_12369#2      ------------------------------------------------------------
                                                                                   

consensus_12369#0      CCTCATCTATTGGGAGGTTTGCTAATGCAGAGGGGGCTTTCATTTATCCTATGTATGGGC 1020
consensus_12369#1      ------------------------------------------------------------
consensus_12369#2      ------------------------------------------------------------
                                                                                   

consensus_12369#0      ATGGTGAGCTGCATCAAGCTTTCTGCCGCTGTGCTGCTGTTAAAGGTATTGCGAATGCCA 1080
consensus_12369#1      ------------------------------------------------------------
consensus_12369#2      ------------------------------------------------------------
                                                                                   

consensus_12369#0      GCCACAGCACTTCTTGTTGATGAGGAAAAAAAGCGTTATGTAGGTATCAGATTGGCATCT 1140
consensus_12369#1      ------------------------------------------------------------
consensus_12369#2      ------------------------------------------------------------
                                                                                   

consensus_12369#0      GGTCAGGATATTTTGTGCCAACAGTTGATACTCGATCCATCATATGAAATTCCTTCCTTG 1200
consensus_12369#1      ------------------------------------------------------------
consensus_12369#2      ------------------------------------------------------------
                                                                                   

consensus_12369#0      GATATGCCAAGTGATGCACCAGTATCAAATTTGCCAAGAAAAGTTGCTAGGGGAATATGC 1260
consensus_12369#1      ------------------------------------------------------------
consensus_12369#2      ------------------------------------------------------------
                                                                                   

consensus_12369#0      ATAATCAGCAGCTCTGTGAGACAAGATACATCAAATGTTCTGGTTGTTTTCCCCCCAAAG 1320
consensus_12369#1      ------------------------------------------------------------
consensus_12369#2      ------------------------------------------------------------
                                                                                   

consensus_12369#0      TCACTAGAAGAGGAGCAAATTACTGCTGTTCGGGTGCTTCAGTTGAGCAGCAATTTAGCA 1380
consensus_12369#1      ------------------------------------------------------------
consensus_12369#2      ------------------------------------------------------------
                                                                                   

consensus_12369#0      GTATGCCCTCCTGGAATGTTCATGGCATATCTCTCTACTCCCTGTACTGATGCCTTCACT 1440
consensus_12369#1      ------------------------------------------------------------
consensus_12369#2      ------------------------------------------------------------
                                                                                   

consensus_12369#0      GGAAAGAAATGCATCAGCAAAGCAATAGATGCTCTTTTCTCAACTAAGGTTTCTAATGAT 1500
consensus_12369#1      ------------------------------------------------------------
consensus_12369#2      ------------------------------------------------------------
                                                                                   

consensus_12369#0      TTGGAAGATCATTTGGAGAAAAACAGTGAAGAAAATAAGGAGAGTGTGAAGCCAACCCTA 1560
consensus_12369#1      ------------------------------------------------------------
consensus_12369#2      ------------------------------------------------------------
                                                                                   

consensus_12369#0      CTCTGGAGCTGTGTGTATGTACAAGAGATTATACAGGGAACATCTGGTACTGCATTGTCA 1620
consensus_12369#1      ------------------------------------------------------------
consensus_12369#2      ------------------------------------------------------------
                                                                                   

consensus_12369#0      TGCCCCATACCTGATGAAAATATGGACTACAGGAGTATACTTGAATCAACAAAAATGCTG 1680
consensus_12369#1      ------------------------------------------------------------
consensus_12369#2      ------------------------------------------------------------
                                                                                   

consensus_12369#0      TTCACTGATATTTGTCCTAATGAAGAGTTCCTGCCTAGAAATTCAGCTCCCAAATATGCT 1740
consensus_12369#1      ---AGAGGACGAGACAAGGGGGAAGAGTTCCTGCCTAGAAATTCAGCTCCCAAATATGCT 57
consensus_12369#2      ------------------------------------------------------------
                                                                                   

consensus_12369#0      TCTGATAATGACTCTGATTCTGCAGAGTAAATCCAAACTTGCAAAGGGCTTTGTATTCTA 1800
consensus_12369#1      TCTGATAACGACTCTGATTTTGCAGAGTAAATCCAAACTTGCAAAGGGCTTTGTATTTTA 117
consensus_12369#2      ------------------------------------------------------------
                                                                                   

consensus_12369#0      CATGACAGGGTTATCGTTGAAGATATCTGTTCCATATTACAGTGTTCCCCAAAGTCACGG 1860
consensus_12369#1      CATGACAGGGTTATCGTTGAAGATATCTGTTCCATATTACAGTGTTCCCCAAAGTCACGG 177
consensus_12369#2      ------------------------------------------------------------
                                                                                   

consensus_12369#0      TAAGAAATATTGCAGCAAGGGGGAGCCCTTTACGTTGGTGAGATTTGCCAGGTTTCTCTT 1920
consensus_12369#1      TAAGAAATATTGCAGCAAGGGGGAGCCCTTTACGTTGGTGAGATTTGCCAGGTTTCTCTT 237
consensus_12369#2      ---------TTGCAGCAAGGGGGAGCCCTTTACGTTGGTGAAATTTGCCAGGTTTTTTTT 51
                                ******************************** ************* * **

consensus_12369#0      TGACTAGATTGCAGATGCCTACATTGTTCCATCATTGGTACGACATATTATGATACTGGT 1980
consensus_12369#1      TGACTAGATTGCAGATGCCTACATTGTTCCATCATTGGTACGACATATTATGATACTGGT 297
consensus_12369#2      TGAATAAATTGCAGAAGCCTACATTGTTCCATCATTGGGGCGACATATTATTATATTGGT 111
                       *** ** ******** **********************  *********** *** ****

consensus_12369#0      AAAACACTCAAGAGAGAGCGATGCAGATGTCCTTGGCATTTTGACATTTGGAGAACATCA 2040
consensus_12369#1      AAAACACTCAAAAGAGAGCGATGCAGATGTCCTTGGCATTTTGACATTTGGAGAACATCA 357
consensus_12369#2      AAAACCCTCAAAAAAAAGCGATGCAAATGTCCTTGGCATTTTGACATTTGGAGAACATCA 171
                       ***** ***** * * ********* **********************************

consensus_12369#0      TACCACATGAACCGCTTAGTGTGATTACTACATCCATATGGTTCTCTGAATTCTATGCTG 2100
consensus_12369#1      TACCCCATGAACCGCTTAGTGTGATTACTACATCCATATGGTTCTCTGAATTTTATGCTG 417
consensus_12369#2      TACCACATGAACCGGTTAGTGTGATTACTACACCCAAATGGTTTTTTGAATTTTAAGGTG 231
                       **** ********* ***************** *** ****** * ****** ** * **

consensus_12369#0      AATTTGTTGGCACATAGGAGTACTGTACTACATAGGAAGGATACTGCTGAGTTCTATGCT 2160
consensus_12369#1      AATTTGTTGGCACATAGGAGTACTGTACTACATAGGAAGGATACTGCTGAGTTCTATGCT 477
consensus_12369#2      AATTTGTTGGCACAAAGGAGTACTGTTTTACATAGAAAGGAAACTGTTGAGTTTTATGGT 291
                       ************** ***********  ******* ***** **** ****** **** *

consensus_12369#0      AAATCTGTGTATTTTTGGTGGGCTGCCTGAATCATTGTACAAGCGAACGACAGAAATGGA 2220
consensus_12369#1      AAATCTGGGTATTTTTGGTGGGCTGCCTGAATCATTGTACAAGCGAACGACAGAAATGGA 537
consensus_12369#2      AAATTTGTGTATTTTTGGGGGGGGGCCTGAATCATTGTCCAAGGGAACCCCAAAAATGGA 351
                       **** ** ********** ***  ************** **** ****  ** *******

consensus_12369#0      TATCAAATGAGGTCCCTCCGAGAGGGAGTTGCATTACATGCATCCTTATCGAAAAA---- 2276
consensus_12369#1      TATCAAATGAGGTCCCTCCGAGAGGGAGTTGCATTACATGCCTCCTTAAAAAAAAAAAAA 597
consensus_12369#2      TATCAAATGAGGTCCCCCCGAAAGGGGGTTGCTTTAAAAAAAAAAAAAAAAAAAAAAAAA 411
                       **************** **** **** ***** *** *         *   *****    

consensus_12369#0      ---------------------
consensus_12369#1      AAAAAAAAAAAAA-------- 610
consensus_12369#2      AAAAAAAAAAAAAAAAAAAAA 432