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Oryza sativa
cluster # 12407 cluster # 12407       Sequences # 10       consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12407#0 length = 1223 sequences # 5  
consensus_12407#1 length = 1070 sequences # 3  
 consensus_12407#2 length = 643 sequences # 1  
consensus_12407#3 length = 586 sequences # 1  
consensusID : consensus_12407#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1223
fasta sequence 
                              [CCCGAGAAATCCCCAATCTGAGAAATCCCTAACTCCGCCGCCAGCGCGCGACTCCGCGGCATCGCCATCCTGCGCGCGAGGCTGCCGCCGCCGCCACTCCACCGCCGCCGGCCAACTCCTCCACGCAACTCCCCCACGCCAGACCCCAACGCCGACCAACTCCTCCACCCACCTCCCTGCCTAATCCTCCTCTTCCCCCACCGTCTCCGTCGTCCATCGCCGCCTCCACCGTCCATCGCCGCCTCCGCCGTCGCCCCTTTGGACCTCCTCTTCCCCCACTCAGCTCATCCCCACCTCAGCCATCATCCACCAGGCCGAGGCATACTCCATCTCCAGGCCTTCCTCTACCCTCCTCGGCTTCATTGGTTGTTCCCACCCAGCCATATCCGTTCACTGA-TTTTTTTTTTTTTTTTGTTCAGAGAGTGATTTGGTCATCCAGATCATAAGCAAGACTCCGGAAGAATGGAAGTTGTGTGCGGAACTGCGTTGGTGTAATGAAGAGTGGATAAAAAAGTCATGCGAAGGTAGGGTATACAGGGAAATGATGGATGGGCCAGCACACCGTCAAGGCAGCGCTTCACTTGACCGATTCCAAAAGAACATGGAGAAGAAGGAGAAGAGGCCAATGGGTATATTTGAGGCTTATGCAGAAGCAAGGAAGAGTGGAAAAGATGGAGAGGACTATTGTACTGACCGTGTCAAGGATAAGCTTGAAGCTTATTTTGGAGTTGTTAAGGAAAAGCATGGTGCAAGTCCTGATTTGATGAAATAACCCATTGATGG----TAAGGCTTGGC-ACATGAAAC---ATGTTTTGCCTCCACGACCAGCGGCCCCAACATGCCCCACTGTCTATTTAGCCATCATCTAAGATCAAGTGCGTCCAATTGCCAGCCATGATTCATTGCTACAGAAATCCATCCAAACATCAAGATCTGGAACAATGATTTTTGGATGTAGTTCATGTTATTTTGGTCCTACCTATCCAATGGACTCCCAGATATTATTCAAGAACTGGTACTTATGATGTTAGAAAAAAATCTACCTATATGAAGGAGCAAACATTACTTTCGTGTGTATTCCATAGATTGGTTGTGGCTGTTTGAATATGTATGTGTGCAACTAAAACAAATATCTGGTATCAACATTTGTACAGATCAGTTTATGCTTTGTACTTGCACTGATTGTATTACATTGCTGAATATTTGAGTGCTTGTACCAAAAAAAAA]

[+] EMBL AK068778             [CCCGAGAAATCCCCAATCTGAGAAATCCCTAACTCCGCCGCCAGCGCGCGACTCCGCGGCATCGCCATCCTGCGCGCGAGGCTGCCGCCGCCGCCACTCCACCGCCGCCGGCCAACTCCTCCACGCAACTCCCCCACGCCAGACCCCAACGCCGACCAACTCCTCCACCCACCTCCCTGCCTAATCCTCCTCTTCCCCCACCGTCTCCGTCGTCCATCGCCGCCTCCACCGTCCATCGCCGCCTCCGCCGTCGCCCCTTTGGACCTCCTCTTCCCCCACTCAGCTCATCCCCACCTCAGCCATCATCCACCAGGCCGAGGCATACTCCATCTCCAGGCCTTCCTCTACCCTCCTCGGCTTCATTGGTTGTTCCCACCCAGCCATATCCGTTCACTGA  TTTTTTTTTTTTTTTGTTCAGAGAGTGATTTGGTCATCCAGATCATAAGCAAGACTCCGGAAGAATGGAAGTTGTGTGCGGAACTGCGTTGGTGTAATGAAGAGTGGATAAAAAAGTCATGCGAAGGTAGGGTATACAGGGAAATGATGGATGGGCCAGCACACCGTCAAGGCAGCGCTTCACTTGACCGATTCCAAAAGAACATGGAGAAGAAGGAGAAGAGGCCAATGGGTATATTTGAGGCTTATGCAGAAGCAAGGAAGAGTGGAAAAGATGGAGAGGACTATTGTACTGACCGTGTCAAGGATAAGCTTGAAGCTTATTTTGGAGTTGTTAAGGAAAAGCATGGTGCAAGTCCTGATTTGATGAAATAACCCATTGATGGCGCTTCAATCT  GC A ATGAAACTTAATGTTTTGCCTCCACGACCAGCGGCCCCAACATGCCCCACTGTCTATTTAGCCATCATCTAAGATCAAGTGCGTCCAATTGCCAGCCATGATTCATTGCTACAGAAATCCATCCAAACATCAAGATCTGGAACAATGATTTTTGGATGTAGTTCATGTTATTTTGGTCCTACCTATCCAATGGACTCCCAGATATTATTCAAGAACTGGTACTTATGATGTTAGAAAAAAATCTACCTATATGAAGGAGCAAACATTACTTTCGTGTGTATTCCATAGATTGGTTGTGGCTGTTTGAATATGTATGTGTGCAACTAAAACAAATATCTGGTATCAACATTTGTACAGATCAGTTTATGCTTTGTACTTG                                                   ]
[+] EMBL CB665401             [             CAATCTGAGAAATCCCTAACTCCGCCGCCAGCGCGCGACTCCGCGGCATCGCCATCCTGCGCGCGAGGCTGCCGCCGCCGCCACTCCACCGCCGCCGGCCAACTCCTCCACGCAACTCCCCCACGCCAGACCCCAACGCCGACCAACTCCTCCACCCACCTCCCTGCCTAATCCTCCTCTTCCCCCACCGTCTCCGTCGTCCATCGCCGCCTCCACCGTCCATCGCCGCCTCCGCCGTCGCCCCTTTGGACCTCCTCTTCCCCCACTCAGCTCATCCCCACCTCAGCCATCATCCACCAGGCCGAGGCATACTCCATCTCCAGGCCTTCCTCTACCCTCCTCGGCTTCATTGGTTGTTCCCACCCAGCCATATCCGTTCACTGA TTTTTTTTTTTTTTTTGTTCAGAGAGTGATTTGGTCATCCAGATCATAAGCAAGACTCCGGAAGAATGGAAGTTGTGTGCGGAACTGCGTTGGTGTAATGAAGAGTGGATAAAAAAGTCATGCGAAGGTAGGGTATACAGGGAAATGATGGATGGGCCAGCACACCGTCAAGGCAGCGCTTCACTTGACCGATTCCAAAAGAACATGGAGAAGAAGGAGAAGAGGCCAATGGGTATATTTGAGGCTTATGCAGAAGCAAGGAAGAGTGGAAAAGATGGAGAGGACTATTGTACTGACCGTGTCAAGGATAAGCTTGAAGCTTATTTTGGAGTTGTTAAGGAAAAGCATGGTGCAAGTCCTGATTTGATGAAATAACCCATTGATGG    TAAGGCTTGGC ACATGAAAC   ATGTT                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CB642515             [                        ATCCCTAACTCCGCCGCCAGCGCGCGACTCCGCGGCATCGCCATCCTGCGCGCGAGGCTGCCGCCGCCGCCACTCCACCGCCGCCGGCCAACTCCTCCACGCAACTCCCCCACGCCAGACCCCAACGCCGACCAACTCCTCCACCCACCTCCCTGCCTAATCCTCCTCTTCCCCCACCGTCTCCGTCGTCCATCGCCGCCTCCACCGTCCATCGCCGCCTCCGCCGTCGCCCCTTTGGACCTCCTCTTCCCCCACTCAGCTCATCCCCACCTCAGCCATCATCCACCAGGCCGAGGCATACTCCATCTCCAGGCCTTCCTCTACCCTCCTCGGCTTCATTGGTTGTTCCCACCCAGCCATATCCGTTCACTGATTTTTTTTTTTTTTTTTGTTCAGAGAGTGATTTGGTCATCCAGATCATAAGCAAGACTCCGGAAGAATGGAAGTTGTGTGCGGAACTGCGTTGGTGTAATGAAGAGTGGATAAAAAAGTCATGCGAAGGTAGGGTATACAGGGAAATGATGGATGGGCCAGCACACCGTCAAGGCAGCGCTTCACTTGACCGATTCCAAAAGAACATGGAGAAGAAGGAGAAGAGGCCAATGGGTATATTTGAGGCTTATGCAGAAGCAAGGAAGAGTGGAAAAGATGGAGAGGACTATTGTACTGACCGTGTCAAGGATAAGCTTGAAGCTTATTTTGGAGTTGTTAAGGAAAAGCATGGTGCAAGTCCTGATTTGATGAAATAACCCATTGATGG    TAAGGCTTGGCAACATGAAAC   ATGTTa                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BI802741             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CCCAGATATTATTCAAGAACTGGTACTTATGATGTTCGAAAAAAATCGACCTATGTGAAGGAGCAGACATTACTTTTGTGTGTATTCCATAGATTGGTTGTGGCTGTTTGAATATGTATGTGTGCAACTAAAAC AATATCTGGTATTAACATTTGTACAGATCAGTTTATGCTTAGTACTTGCACTGATTGTATTACATTGCTGAATATTTGAGTGCTTGTACCAAAAAAAAA]
[-] EMBL AW070076             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GTTAGAAAAAAATCTACCTATATGAAGGAGCAAACATTACTTTCGTGTGTATTCCATAGATTGGTTGTGGCTGTTTGAATATGTATGTGTGCAACTAAAACAAATATCTGGTATCAACATTTGTACctgcc                                                                      ]




>consensus_12407#0
CCCGAGAAATCCCCAATCTGAGAAATCCCTAACTCCGCCGCCAGCGCGCGACTCCGCGGC
ATCGCCATCCTGCGCGCGAGGCTGCCGCCGCCGCCACTCCACCGCCGCCGGCCAACTCCT
CCACGCAACTCCCCCACGCCAGACCCCAACGCCGACCAACTCCTCCACCCACCTCCCTGC
CTAATCCTCCTCTTCCCCCACCGTCTCCGTCGTCCATCGCCGCCTCCACCGTCCATCGCC
GCCTCCGCCGTCGCCCCTTTGGACCTCCTCTTCCCCCACTCAGCTCATCCCCACCTCAGC
CATCATCCACCAGGCCGAGGCATACTCCATCTCCAGGCCTTCCTCTACCCTCCTCGGCTT
CATTGGTTGTTCCCACCCAGCCATATCCGTTCACTGATTTTTTTTTTTTTTTTGTTCAGA
GAGTGATTTGGTCATCCAGATCATAAGCAAGACTCCGGAAGAATGGAAGTTGTGTGCGGA
ACTGCGTTGGTGTAATGAAGAGTGGATAAAAAAGTCATGCGAAGGTAGGGTATACAGGGA
AATGATGGATGGGCCAGCACACCGTCAAGGCAGCGCTTCACTTGACCGATTCCAAAAGAA
CATGGAGAAGAAGGAGAAGAGGCCAATGGGTATATTTGAGGCTTATGCAGAAGCAAGGAA
GAGTGGAAAAGATGGAGAGGACTATTGTACTGACCGTGTCAAGGATAAGCTTGAAGCTTA
TTTTGGAGTTGTTAAGGAAAAGCATGGTGCAAGTCCTGATTTGATGAAATAACCCATTGA
TGGTAAGGCTTGGCACATGAAACATGTTTTGCCTCCACGACCAGCGGCCCCAACATGCCC
CACTGTCTATTTAGCCATCATCTAAGATCAAGTGCGTCCAATTGCCAGCCATGATTCATT
GCTACAGAAATCCATCCAAACATCAAGATCTGGAACAATGATTTTTGGATGTAGTTCATG
TTATTTTGGTCCTACCTATCCAATGGACTCCCAGATATTATTCAAGAACTGGTACTTATG
ATGTTAGAAAAAAATCTACCTATATGAAGGAGCAAACATTACTTTCGTGTGTATTCCATA
GATTGGTTGTGGCTGTTTGAATATGTATGTGTGCAACTAAAACAAATATCTGGTATCAAC
ATTTGTACAGATCAGTTTATGCTTTGTACTTGCACTGATTGTATTACATTGCTGAATATT
TGAGTGCTTGTACCAAAAAAAAA

consensusID : consensus_12407#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1070
fasta sequence 
                              [GGCCGCCGAACATCCCCGCCTCCACCGTCCATCGCCGCCTCCGCCGTCACCCCTTTGGACCTCCTCTTCCCCCACTCAGCTCATCCCCACCTCAGCCATCATCCACCAGGTTGAGCCATACTCCATCTCCAGGCCTTCTCTACTCTCCTCGGCTTCACTGGTTGTTCCCACCCAGCCATATCCTTTTTTTTTTTTTGTTCAGAGAGTGATTTGGTCATCCAGATCATAAGCAAGACTCCGGAAGGATGGAAATTGTGTGCGGAACTGCATTGGTGTAATGAAGAGTGGATAAAAGAGTCATGTGAAGGTAGGGTATACAGGGAAATGATGGATGGGCCAGCACACCGTCAAGGCAGCGCTTCACTTGACCGATTCCAAAAGAACATGGAAGGAGAAGAAGGAGAAGAGGCCAGTGGGTATATTTGAGGCTTATGCAGAAGCAAGGAAGAATGGAAAAGATGGAGAGGACTATTGTACTGACCGTGGCAAGGGTAAGCTTGAAGCTTATTTTGGAGTTGTTAAGGAAAAGCATGGTGCAAGTCCTGATTTGATGAAATAACCCATTGATGGTAAGGCTTGGCAACATGAAACATGTTATTTAACATCTGGGATACAGTTGGCGCTTCAATCTGCAATGAAACTTAATGTTTTGCCTCCACGTCCAGGGGCCCCAACATGCCCCACTGTCTATTTAGCCATCATATAAGATCAAGTGCGTCCAATTGCCAGCCATGATTCTTTGCTACAGAAATCCATCCAAACATCAAGATGTGGAACAATGATTTTGGGATGTAGTTCATGTTATTTTGGTCCTACCTATCCAATGGACTCCCAGATATTATTCAAGAAATGGTATTTATGATGTTAGAAAAAAATCTACCTATATGAAGGAGCAAACATTACTTTCGTGTGTATTCCATAGATTGGTTGTGGCTGTTTGAATATGTAGGTGTGCAAGTAAAACAAATATCTGCTATCAACATTTGTACAGATCAGTTTATGCTTGGTACTTGCAGGGATTGTATTGCATTGCTGAATATTTGAGTGCTTGTTCCAACAAAAAAAAGGAT]

[+] EMBL CF306092             [GGCCGCCGAACATCCCCGCCTCCACCGTCCATCGCCGCCTCCGCCGTCACCCCTTTGGACCTCCTCTTCCCCCACTCAGCTCATCCCCACCTCAGCCATCATCCACCAGGTTGAGCCATACTCCATCTCCAGGCCTTCTCTACTCTCCTCGGCTTCACTGGTTGTTCCCACCCAGCCATATCCTTTTTTTTTTTTTGTTCAGAGAGTGATTTGGTCATCCAGATCATAAGCAAGACTCCGGAAGGATGGAAATTGTGTGCGGAACTGCATTGGTGTAATGAAGAGTGGATAAAAGAGTCATGTGAAGGTAGGGTATACAGGGAAATGATGGATGGGCCAGCACACCGTCAAGGCAGCGCTTCACTTGACCGATTCCAAAAGAACATGGAAGGAGAAGAAGGAGAAGAGGCCAGTGGGTATATTTGAGGCTTATGCAGAAGCAAGGAAGAATGGAAAAGATGGAGAGGACTATTGTACTGACCGTGGCAAGGGTAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CB642516             [                                                                                                                                                                                                                                                                                                                                          GATGGGCCAGCACTCTGTCAAGGCAGCGCTTCACTTGACCGATTCCAAAAGAACAT    GGAGAAGAAGGAGAAGAGGCCAATGGGTATATTTGAGGCTTATGCAGAAGCAAGGAAGAGTGGAAAAGATGGAGAGGAGTATTGTACTGACCGTGTCAAGGATAAGCTTGAAGCTTATTTTGGAGTTGTTAAGGAAAAGCATGGTGCAAGTCCTGATTTGATGAAATAACCCATTGATGGTAAGGCTTGGCAACATGAAACATGTTATTTAACATCTGGGATACAGTTGGCGCTTCAATCTGCAATGAAACTTAATGTTTTGCCTCCACGTCCAGGGGCCCCAACATGCCCCACTGTCTATTTAGCCATCATATAAGATCAAGTGCGTCCAATTGCCAGCCATGATTCTTTGCTACAGAAATCCATCCAAACATCAAGATGTGGAACAATGATTTTGGGATGTAGTTCATGTTATTTTGGTCCTACCTATCCAATGGACTCCCAGATATTATTCAAGAAATGGTATTTATGATGTTAGAAAAAAATCTACCTATATGAAGGAGCAAACATTACTTTCGTGTGTATTCCATAGATTGGTTGTGGCTGTTTGAATATGTAGGTGTGCAAGTAAAACAAATATCTGCTATCAACATTTGTACAGATCAGTTTATGCTTGGTACTTGCAGGGATTGTATTGCATTGCTGAATATTTGAGTGCTTGTTCCAACAAAAAAAAGGAT]
[-] EMBL CB665402             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GTTAATTAACATCTGCGATACAGCTGGCGCTTCAATGTGCAATGAAACTTAATGTTTTGCCTCCAGGACCAGCGGCCCCAACATGCCCCACTGTCTATTTAGCCATCATTTAAGATCAAGTGCGTCCAATTGCCAGCCATGATTCATTGCTACAGAAATCCATCCAAACATCAAGATCTGGAACAATGATTTTTGGATGTAGTTCATGTTATTTTGGTCCTACCTATCCAATGGACTCCCAAATATTATTCAAGAACTGGTACTTATGATGTTAGAAAAAAATCTACCTATATGAAGGAGCAAACATTACTTTCGTGTGTATTCCATAGATTGGTTGTGGCTGTTTGAATATGTATGTGTGCAACTAAAACAAATATCTGGTATCAACATTTGTACAGATCAGTTTATGCTTTGTACTTGCACTGATTGTATTACATTGCTGAATATTTGAGTGCTTGTACC               ]




>consensus_12407#1
GGCCGCCGAACATCCCCGCCTCCACCGTCCATCGCCGCCTCCGCCGTCACCCCTTTGGAC
CTCCTCTTCCCCCACTCAGCTCATCCCCACCTCAGCCATCATCCACCAGGTTGAGCCATA
CTCCATCTCCAGGCCTTCTCTACTCTCCTCGGCTTCACTGGTTGTTCCCACCCAGCCATA
TCCTTTTTTTTTTTTTGTTCAGAGAGTGATTTGGTCATCCAGATCATAAGCAAGACTCCG
GAAGGATGGAAATTGTGTGCGGAACTGCATTGGTGTAATGAAGAGTGGATAAAAGAGTCA
TGTGAAGGTAGGGTATACAGGGAAATGATGGATGGGCCAGCACACCGTCAAGGCAGCGCT
TCACTTGACCGATTCCAAAAGAACATGGAAGGAGAAGAAGGAGAAGAGGCCAGTGGGTAT
ATTTGAGGCTTATGCAGAAGCAAGGAAGAATGGAAAAGATGGAGAGGACTATTGTACTGA
CCGTGGCAAGGGTAAGCTTGAAGCTTATTTTGGAGTTGTTAAGGAAAAGCATGGTGCAAG
TCCTGATTTGATGAAATAACCCATTGATGGTAAGGCTTGGCAACATGAAACATGTTATTT
AACATCTGGGATACAGTTGGCGCTTCAATCTGCAATGAAACTTAATGTTTTGCCTCCACG
TCCAGGGGCCCCAACATGCCCCACTGTCTATTTAGCCATCATATAAGATCAAGTGCGTCC
AATTGCCAGCCATGATTCTTTGCTACAGAAATCCATCCAAACATCAAGATGTGGAACAAT
GATTTTGGGATGTAGTTCATGTTATTTTGGTCCTACCTATCCAATGGACTCCCAGATATT
ATTCAAGAAATGGTATTTATGATGTTAGAAAAAAATCTACCTATATGAAGGAGCAAACAT
TACTTTCGTGTGTATTCCATAGATTGGTTGTGGCTGTTTGAATATGTAGGTGTGCAAGTA
AAACAAATATCTGCTATCAACATTTGTACAGATCAGTTTATGCTTGGTACTTGCAGGGAT
TGTATTGCATTGCTGAATATTTGAGTGCTTGTTCCAACAAAAAAAAGGAT

consensusID : consensus_12407#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 643
fasta sequence 
                              [ACGAGACAAGGGGGGAAAAGCATGGTGCAAGTCATGATNTGATGAAATAACCCATTGATGGTAAGGCTTGGCAACATGAAACATGTTACTTAACATCTGCGATATAGCTGGTAACTTGTAGTTTTGCCTCCTTTATGTACTTATTAATTTTAAAATTCATCAACATGTATAAATTTAACTATTTGCATTGTCATGTGTAAATAAATTTCAGGCGCTTCAATCTGCAATGAAAGTTAATGTTTTGCCTCCACGACCAGCGGCCCCAACATGCCCCACTGTCTATTTAGCCATCATCTAGATCAAGTGTGTCCAATTGCCAGCCATGATTCATTGCTACAGAAATCCATCCAAACATCAAGATCTGGAACAATGACTTTTGGATGTAGTTCGTGTTATTTTGGTCCTACCTATCCAATGGACTCCCAGATATTATTCAAGAACTGGTACTTATGATGTTCGAAAAAAATCGACCTATGTGAAGGAGCAGACATTACTTTTGTGTGTATTCCATAGATTGGTTGTGGCTGTTTGAATATGTATGTGTGCAACTAAAACAAATATCTGGTATTAACATTTGTACAGATCAGTTTATGCTTAGTACTTGCACTGATTGTATTACATTGCTGAATAAAAAAAAAAATAA]

[-] EMBL CA760640             [ACGAGACAAGGGGGGAAAAGCATGGTGCAAGTCATGATNTGATGAAATAACCCATTGATGGTAAGGCTTGGCAACATGAAACATGTTACTTAACATCTGCGATATAGCTGGTAACTTGTAGTTTTGCCTCCTTTATGTACTTATTAATTTTAAAATTCATCAACATGTATAAATTTAACTATTTGCATTGTCATGTGTAAATAAATTTCAGGCGCTTCAATCTGCAATGAAAGTTAATGTTTTGCCTCCACGACCAGCGGCCCCAACATGCCCCACTGTCTATTTAGCCATCATCTAGATCAAGTGTGTCCAATTGCCAGCCATGATTCATTGCTACAGAAATCCATCCAAACATCAAGATCTGGAACAATGACTTTTGGATGTAGTTCGTGTTATTTTGGTCCTACCTATCCAATGGACTCCCAGATATTATTCAAGAACTGGTACTTATGATGTTCGAAAAAAATCGACCTATGTGAAGGAGCAGACATTACTTTTGTGTGTATTCCATAGATTGGTTGTGGCTGTTTGAATATGTATGTGTGCAACTAAAACAAATATCTGGTATTAACATTTGTACAGATCAGTTTATGCTTAGTACTTGCACTGATTGTATTACATTGCTGAATAAAAAAAAAAATAA]




>consensus_12407#2
ACGAGACAAGGGGGGAAAAGCATGGTGCAAGTCATGATNTGATGAAATAACCCATTGATG
GTAAGGCTTGGCAACATGAAACATGTTACTTAACATCTGCGATATAGCTGGTAACTTGTA
GTTTTGCCTCCTTTATGTACTTATTAATTTTAAAATTCATCAACATGTATAAATTTAACT
ATTTGCATTGTCATGTGTAAATAAATTTCAGGCGCTTCAATCTGCAATGAAAGTTAATGT
TTTGCCTCCACGACCAGCGGCCCCAACATGCCCCACTGTCTATTTAGCCATCATCTAGAT
CAAGTGTGTCCAATTGCCAGCCATGATTCATTGCTACAGAAATCCATCCAAACATCAAGA
TCTGGAACAATGACTTTTGGATGTAGTTCGTGTTATTTTGGTCCTACCTATCCAATGGAC
TCCCAGATATTATTCAAGAACTGGTACTTATGATGTTCGAAAAAAATCGACCTATGTGAA
GGAGCAGACATTACTTTTGTGTGTATTCCATAGATTGGTTGTGGCTGTTTGAATATGTAT
GTGTGCAACTAAAACAAATATCTGGTATTAACATTTGTACAGATCAGTTTATGCTTAGTA
CTTGCACTGATTGTATTACATTGCTGAATAAAAAAAAAAATAA

consensusID : consensus_12407#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 586
fasta sequence 
                              [AAGCAAGACTCCGGAAGAATGGAAGTTGTGTGCGGAACTGCGTTGGTGTAATGAAGAGTGGATAAAAAAGTCATGCGAAGGTAGGGTATACAGGGAAATGATGGATGGGCCAGCACACCGTCAAGGCAGCGCTTTACTTGACCGATTCCAAAAGAACATGGAAAAGCATGGTGCAAGTCATGATTTGATGAAATAACCCATTGATGGCGCTTCAATCTGCAATGAAAGTTAATGTTTTGCCTCCACGACCAGCGGCCCCAACATGCCCCACTGTCTATTTAGCCATCATCTAGATCAAGTGTGTCCAATTGCCAGCCATGATTCATTGCTACAGAAATCCATCCAAACATCAAGATCTGGAACAATGACTTTTGGATGTAGTTCGTGTTATTTTGGTCCTACCTATCCAATGGACTCCCAGATATTATTCAAGAACTGGTACTTATGATGTTCGAAAAAAATCGACCTATGTGAAGGAGCAGACATTACTTTTGTGTGTATTCCATAGATTGGTTGTGGCTGTTTGAATATGTATGTGTGCAACTAAAACAGATATCTGGTATTAACATTTGTACAGATCAGTTTA]

[+] EMBL CA764241             [AAGCAAGACTCCGGAAGAATGGAAGTTGTGTGCGGAACTGCGTTGGTGTAATGAAGAGTGGATAAAAAAGTCATGCGAAGGTAGGGTATACAGGGAAATGATGGATGGGCCAGCACACCGTCAAGGCAGCGCTTTACTTGACCGATTCCAAAAGAACATGGAAAAGCATGGTGCAAGTCATGATTTGATGAAATAACCCATTGATGGCGCTTCAATCTGCAATGAAAGTTAATGTTTTGCCTCCACGACCAGCGGCCCCAACATGCCCCACTGTCTATTTAGCCATCATCTAGATCAAGTGTGTCCAATTGCCAGCCATGATTCATTGCTACAGAAATCCATCCAAACATCAAGATCTGGAACAATGACTTTTGGATGTAGTTCGTGTTATTTTGGTCCTACCTATCCAATGGACTCCCAGATATTATTCAAGAACTGGTACTTATGATGTTCGAAAAAAATCGACCTATGTGAAGGAGCAGACATTACTTTTGTGTGTATTCCATAGATTGGTTGTGGCTGTTTGAATATGTATGTGTGCAACTAAAACAGATATCTGGTATTAACATTTGTACAGATCAGTTTA]




>consensus_12407#3
AAGCAAGACTCCGGAAGAATGGAAGTTGTGTGCGGAACTGCGTTGGTGTAATGAAGAGTG
GATAAAAAAGTCATGCGAAGGTAGGGTATACAGGGAAATGATGGATGGGCCAGCACACCG
TCAAGGCAGCGCTTTACTTGACCGATTCCAAAAGAACATGGAAAAGCATGGTGCAAGTCA
TGATTTGATGAAATAACCCATTGATGGCGCTTCAATCTGCAATGAAAGTTAATGTTTTGC
CTCCACGACCAGCGGCCCCAACATGCCCCACTGTCTATTTAGCCATCATCTAGATCAAGT
GTGTCCAATTGCCAGCCATGATTCATTGCTACAGAAATCCATCCAAACATCAAGATCTGG
AACAATGACTTTTGGATGTAGTTCGTGTTATTTTGGTCCTACCTATCCAATGGACTCCCA
GATATTATTCAAGAACTGGTACTTATGATGTTCGAAAAAAATCGACCTATGTGAAGGAGC
AGACATTACTTTTGTGTGTATTCCATAGATTGGTTGTGGCTGTTTGAATATGTATGTGTG
CAACTAAAACAGATATCTGGTATTAACATTTGTACAGATCAGTTTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12407#0      CCCGAGAAATCCCCAATCTGAGAAATCCCTAACTCCGCCGCCAGCGCGCGACTCCGCGGC 60
consensus_12407#3      ------------------------------------------------------------
consensus_12407#1      ------------------------------------------------------------
consensus_12407#2      ------------------------------------------------------------
                                                                                   

consensus_12407#0      ATCGCCATCCTGCGCGCGAGGCTGCCGCCGCCGCCACTCCACCGCCGCCGGCCAACTCCT 120
consensus_12407#3      ------------------------------------------------------------
consensus_12407#1      ------------------------------------------------------------
consensus_12407#2      ------------------------------------------------------------
                                                                                   

consensus_12407#0      CCACGCAACTCCCCCACGCCAGACCCCAACGCCGACCAACTCCTCCACCCACCTCCCTGC 180
consensus_12407#3      ------------------------------------------------------------
consensus_12407#1      ------------------------------------------------------------
consensus_12407#2      ------------------------------------------------------------
                                                                                   

consensus_12407#0      CTAATCCTCCTCTTCCCCCACCGTCTCCGTCGTCCATCGCCGCCTCCACCGTCCATCGCC 240
consensus_12407#3      ------------------------------------------------------------
consensus_12407#1      ------------------------GGCCGCCGAACATCCCCGCCTCCACCGTCCATCGCC 36
consensus_12407#2      ------------------------------------------------------------
                                                                                   

consensus_12407#0      GCCTCCGCCGTCGCCCCTTTGGACCTCCTCTTCCCCCACTCAGCTCATCCCCACCTCAGC 300
consensus_12407#3      ------------------------------------------------------------
consensus_12407#1      GCCTCCGCCGTCACCCCTTTGGACCTCCTCTTCCCCCACTCAGCTCATCCCCACCTCAGC 96
consensus_12407#2      ------------------------------------------------------------
                                                                                   

consensus_12407#0      CATCATCCACCAGGCCGAGGCATACTCCATCTCCAGGCCTTCCTCTACCCTCCTCGGCTT 360
consensus_12407#3      ------------------------------------------------------------
consensus_12407#1      CATCATCCACCAGGTTGAGCCATACTCCATCTCCAGGCCTTC-TCTACTCTCCTCGGCTT 155
consensus_12407#2      ------------------------------------------------------------
                                                                                   

consensus_12407#0      CATTGGTTGTTCCCACCCAGCCATATCCGTTCACTGATTTTTTTTTTTTTTTTGTTCAGA 420
consensus_12407#3      ------------------------------------------------------------
consensus_12407#1      CACTGGTTGTTCCCACCCAGCCATATCC------------TTTTTTTTTTTTTGTTCAGA 203
consensus_12407#2      ------------------------------------------------------------
                                                                                   

consensus_12407#0      GAGTGATTTGGTCATCCAGATCATAAGCAAGACTCCGGAAGAATGGAAGTTGTGTGCGGA 480
consensus_12407#3      ------------------------AAGCAAGACTCCGGAAGAATGGAAGTTGTGTGCGGA 36
consensus_12407#1      GAGTGATTTGGTCATCCAGATCATAAGCAAGACTCCGGAAGGATGGAAATTGTGTGCGGA 263
consensus_12407#2      --------------------------------------------ACGAGACAAGGGGGGA 16
                                                                      *     * * ***

consensus_12407#0      ACTGCGTTGGTGTAA-TGAAGAGTGGATAAAAAAGTCATGCGAAGGTAGGGTATACAGGG 539
consensus_12407#3      ACTGCGTTGGTGTAA-TGAAGAGTGGATAAAAAAGTCATGCGAAGGTAGGGTATACAGGG 95
consensus_12407#1      ACTGCATTGGTGTAA-TGAAGAGTGGATAAAAGAGTCATGTGAAGGTAGGGTATACAGGG 322
consensus_12407#2      AAAGCAT-GGTGCAAGTCATGATNTGATGAAATAACCCATTGATGGTAAGGCTTG--GCA 73
                       *  ** * **** ** * * **   *** *** *  *    ** **** **  *   *  

consensus_12407#0      AAATGATGGATGGGCCAGCACACCGTCAAGGCAGCGCTTCACTTGACCGATTCCAAAAGA 599
consensus_12407#3      AAATGATGGATGGGCCAGCACACCGTCAAGGCAGCGCTTTACTTGACCGATTCCAAAAGA 155
consensus_12407#1      AAATGATGGATGGGCCAGCACACCGTCAAGGCAGCGCTTCACTTGACCGATTCCAAAAGA 382
consensus_12407#2      ACATGAAACATGTTACTTAACATCTGCGATATAGCTGGTAACTTG-TAGTTTTGCCTCCT 132
                       * ****   ***   *   *** *  * *   ***   * *****   * **        

consensus_12407#0      ACATGGAG----AAGAAGGAGAAGAGGCCAATGGGTATATTTGAGGCTTATGCAGAAGCA 655
consensus_12407#3      ACATGGA----------------------------------------------------- 162
consensus_12407#1      ACATGGAAGGAGAAGAAGGAGAAGAGGCCAGTGGGTATATTTGAGGCTTATGCAGAAGCA 442
consensus_12407#2      TTATGTA---------------------------------------CTTAT--------- 144
                         *** *                                                     

consensus_12407#0      AGGAAGAGTGGAAAAGATGGAGAGGACTATTGTACTGACCGTGTCAAGGATAAGCTTGAA 715
consensus_12407#3      ------------------------------------------------------------
consensus_12407#1      AGGAAGAATGGAAAAGATGGAGAGGACTATTGTACTGACCGTGGCAAGGGTAAGCTTGAA 502
consensus_12407#2      --------------------------------------------------TAATTTTAAA 154
                                                                                   

consensus_12407#0      GCTTATTTTGGAGTTGTTAAGGAAAAGCATGGTGCAAGTCCTGATTTGATGAAATAACCC 775
consensus_12407#3      -----------------------AAAGCATGGTGCAAGTCATGATTTGATGAAATAACCC 199
consensus_12407#1      GCTTATTTTGGAGTTGTTAAGGAAAAGCATGGTGCAAGTCCTGATTTGATGAAATAACCC 562
consensus_12407#2      ATTCATCAACATGT----------ATAAATTTAACTATTTGCATTGTCATGTGTAAATAA 204
                                               *   **    * * *     * * ***    **   

consensus_12407#0      ATTGATGGTAAGGC----------------------------------------TTGGCA 795
consensus_12407#3      ATTGATGGCGCTTCA--------------------------------------ATCTGCA 221
consensus_12407#1      ATTGATGGTAAGGCTTGGCAACATGAAACATGTTATTTAACATCTGGGATACAGTTGGCG 622
consensus_12407#2      ATTTCAGGCGCTTCA--------------------------------------ATCTGCA 226
                       ***   **     *                                        *  ** 

consensus_12407#0      C-----------ATGAAAC---ATGTTTTGCCTCCACGACCAGCGGCCCCAACATGCCCC 841
consensus_12407#3      ------------ATGAAAGTTAATGTTTTGCCTCCACGACCAGCGGCCCCAACATGCCCC 269
consensus_12407#1      CTTCAATCTGCAATGAAACTTAATGTTTTGCCTCCACGTCCAGGGGCCCCAACATGCCCC 682
consensus_12407#2      ------------ATGAAAGTTAATGTTTTGCCTCCACGACCAGCGGCCCCAACATGCCCC 274
                                   ******    **************** **** ****************

consensus_12407#0      ACTGTCTATTTAGCCATCATCTAAGATCAAGTGCGTCCAATTGCCAGCCATGATTCATTG 901
consensus_12407#3      ACTGTCTATTTAGCCATCATCTA-GATCAAGTGTGTCCAATTGCCAGCCATGATTCATTG 328
consensus_12407#1      ACTGTCTATTTAGCCATCATATAAGATCAAGTGCGTCCAATTGCCAGCCATGATTCTTTG 742
consensus_12407#2      ACTGTCTATTTAGCCATCATCTA-GATCAAGTGTGTCCAATTGCCAGCCATGATTCATTG 333
                       ******************** ** ********* ********************** ***

consensus_12407#0      CTACAGAAATCCATCCAAACATCAAGATCTGGAACAATGATTTTTGGATGTAGTTCATGT 961
consensus_12407#3      CTACAGAAATCCATCCAAACATCAAGATCTGGAACAATGACTTTTGGATGTAGTTCGTGT 388
consensus_12407#1      CTACAGAAATCCATCCAAACATCAAGATGTGGAACAATGATTTTGGGATGTAGTTCATGT 802
consensus_12407#2      CTACAGAAATCCATCCAAACATCAAGATCTGGAACAATGACTTTTGGATGTAGTTCGTGT 393
                       **************************** *********** *** *********** ***

consensus_12407#0      TATTTTGGTCCTACCTATCCAATGGACTCCCAGATATTATTCAAGAACTGGTACTTATGA 1021
consensus_12407#3      TATTTTGGTCCTACCTATCCAATGGACTCCCAGATATTATTCAAGAACTGGTACTTATGA 448
consensus_12407#1      TATTTTGGTCCTACCTATCCAATGGACTCCCAGATATTATTCAAGAAATGGTATTTATGA 862
consensus_12407#2      TATTTTGGTCCTACCTATCCAATGGACTCCCAGATATTATTCAAGAACTGGTACTTATGA 453
                       *********************************************** ***** ******

consensus_12407#0      TGTTAGAAAAAAATCTACCTATATGAAGGAGCAAACATTACTTTCGTGTGTATTCCATAG 1081
consensus_12407#3      TGTTCGAAAAAAATCGACCTATGTGAAGGAGCAGACATTACTTTTGTGTGTATTCCATAG 508
consensus_12407#1      TGTTAGAAAAAAATCTACCTATATGAAGGAGCAAACATTACTTTCGTGTGTATTCCATAG 922
consensus_12407#2      TGTTCGAAAAAAATCGACCTATGTGAAGGAGCAGACATTACTTTTGTGTGTATTCCATAG 513
                       **** ********** ****** ********** ********** ***************

consensus_12407#0      ATTGGTTGTGGCTGTTTGAATATGTATGTGTGCAACTAAAACAAATATCTGGTATCAACA 1141
consensus_12407#3      ATTGGTTGTGGCTGTTTGAATATGTATGTGTGCAACTAAAACAGATATCTGGTATTAACA 568
consensus_12407#1      ATTGGTTGTGGCTGTTTGAATATGTAGGTGTGCAAGTAAAACAAATATCTGCTATCAACA 982
consensus_12407#2      ATTGGTTGTGGCTGTTTGAATATGTATGTGTGCAACTAAAACAAATATCTGGTATTAACA 573
                       ************************** ******** ******* ******* *** ****

consensus_12407#0      TTTGTACAGATCAGTTTATGCTTTGTACTTGCACTGATTGTATTACATTGCTGAATATTT 1201
consensus_12407#3      TTTGTACAGATCAGTTTA------------------------------------------ 586
consensus_12407#1      TTTGTACAGATCAGTTTATGCTTGGTACTTGCAGGGATTGTATTGCATTGCTGAATATTT 1042
consensus_12407#2      TTTGTACAGATCAGTTTATGCTTAGTACTTGCACTGATTGTATTACATTGCTGAATAAAA 633
                       ******************                                          

consensus_12407#0      GAGTGCTTGTACCAAAAAAAAA------ 1223
consensus_12407#3      ----------------------------
consensus_12407#1      GAGTGCTTGTTCCAACAAAAAAAAGGAT 1070
consensus_12407#2      AAAAAAATAA------------------ 643


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)