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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12457#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 649 fasta sequence
[TTGCGCCGCCGCCAAGACGAGTCGCGGCTGCCGATCTCCATCTGGCGAGGAGAGTAGGGGAGGGGATCCTGTTAAAAGCTTCCATCCAGGAATGGCAATGGCATTGAGAAGAGTACTGAAACATGGTGTAATCCCAAGAGATGCAGCTCAAGTAGTTGGCATAAGAGGATTTGCAATTGCAAGCAAGGCAAAGAAGGCGGAAAGGGTNCGGCCGATGC-TGCTAAAACCCCTGTGCTCAGCAAAGAACTTAAGAGTACAACAGTGTTT-GGGGCAAATATCCTCAAGGA-GGGGTCTGATCCGAAACTCCAGCCAGATTCTGAATACCCTGAGTGGCTGTGGCACCTGCTCGACAAGCGCCCTATGCTGAGTGAGCTGCGGAGGAAAGATGCCAAGACGCTCCCCTATGAAGACCTGAAACGGTTCGTCAAGCTGGTGAACCGAGCTCGGATCAAGGAGCAGAATGCCCTCACTGCAAAGAACTGATCTGGATACTCTCTGGAGGTTCCATCATCTGTTTTTCACTACATGATTTACTGTTGAAATATGCTAAGCTGTGCACTGTAATAATGTAGTGACCTGGAACATTAGAATATTTAAGAGATGCTTCCTAATTTTTGTTTTCTGGCAAAAAAAAAAAACAAAAAAAAAA]
[+] EMBL AU081255 [TTGCGCCGCCGCCAAGACGAGTCGCGGCTGCCGATCTCCATCTGGCGAGGAGAGTAGGGGAGGGGATCCTGTTAAAAGCTTCCATCCAGGAATGGCAATGGCATTGAGAAGAGTACTGAAACATGGTGTAATCCCAAGAGATGCAGCTCAAGTAGTTGGCATAAGAGGATTTGCAATTGCAAGCAAGGCAAAGAAGGCGGAAAGGGTNCGGCCGATGC TGCTAAAACCCCTGTGCTCAGCAAAGAACTTAAGAGTACAACAGTGTTT GGGGCAAATATCCTCAAGGA GGGGTCTGATCCGAAACTCCAGCCAGATTCTGAATACCCTGAGTGGCTGTGGCACCTGCTCGACAAGCGCCCTATGCTGAGTGAGCTGCGGAGGAAAGATGCCAAGACGCTCCCCTATGAAGACCTGAAACGGTTCGTCAAGCTGGTGAACCGAGCTCGGATCAAGGAGCAGAATGCCCTCACTGCAAAGAACTGATCTGGATACTCTCTGGAGGTTCCATCATCTGTTTTTCACTACATGATTTACTGTTGAAATATGCTAAGCTGTGCACTGTAATAATGTAGTGACCTGGAACATTAGAATATTTAAGAGATGCTTCCTAATTTTTGTTTTCTGGNAAAAA ]
[+] EMBL C27801 [ GCGCCGCCGCCAAGACGAGTCGCGGCTGCCGATCTCCATCTGGCGAGGAGAGTAGGGGAGGGGATCCTGTTAAAAGCTTCCATCCAGGAATGGCAATGGCATTGAGAAGAGTACTGAAACATGGTGTAATCCCAAGAGATGCAGCTCAAGTAGTTGGCATAAGAGGATTTGCA ]
[+] EMBL AU065565 [ AGACGAGTCGCGGCTGCCGATCTCCATCTGGCGAGGAGAGTAGGGGAGGGGATCCTGTTAAAAGCTTCCATCCAGGAATGGCAATGGCATTGAGAAGAGTACTGAAACATGGTGTAATCCCAAGAGATGCAGCTCAAGTAGTTGGCATAAGAGGATTTGCA ]
[+] EMBL AK120721 [ CGATGC TGCTAAAACCCCTGTGCTCAGCAAAGAACTTAAGAGTACAACAGTGTTT GGGGCAAATATCCTCAAGGA GGGGTCTGATCCGAAACTCCAGCCAGATTCTGAATACCCTGAGTGGCTGTGGCACCTGCTCGACAAGCGCCCTATGCTGAGTGAGCTGCGGAGGAAAGATGCCAAGACGCTCCCCTATGAAGACCTGAAACGGTTCGTCAAGCTGGTGAACCGAGCTCGGATCAAGGAGCAGAATGCCCTCACTGCAAAGAACTGATCTGGATACTCTCTGGAGGTTCCATCATCTGTTTTTCACTACATGATTTACTGTTGAAATATGCTAAGCTGTGCACTGTAATAATGTAGTGACCTGGAACATTAGAATATTTAAGAGATGCTTCCTAATTTTT ]
[+] EMBL CF281413 [ CGATGC TGCTAAAACCCCTGTGCTCAGCAAAGAACTTAAGAGTACAACAGTGTTT GGGGCAAATATCCTCAAGGA GGGGTCTGATCCGAAACTCCAGCCAGATTCTGAATACCCTGAGTGGCTGTGGCACCTGCTCGACAAGCGCCCTATGCTGAGTGAGCTGCGGAGGAAAGATGCCAAGACGCTCCCCTATGAAGACCTGAAACGGTTCGTCAAGCTGGTGAACCGAGCTCGGATCAAGGAGCAGAATGCCCTCACTGCAAAGAACTGAT ]
[+] EMBL AU064826 [ CGATGC TGCTAAAACCCCTGTGCTCAGCAAAGAACTTAAGAGTACAACAGTGTTT GGGGCAAATATCCTCAAGGA GGGGTCTGATCCGAAACTTCAGCCAGATTCTGAATACCCTGAGTGGCTGTGGCACCTGCTCGACAAGCG CCTATGCTGAGTGAGCTNCGGAGGAAAGATGCCAAGACG TTCCCTATG AGNCCTG AACGGTTCGTCAAGCTGGTGACCCG GCTNGGATCAAGGn ]
[+] EMBL AU030071 [ CGATGCTTGCTAAAACCCCTGTGCTCAGCAAAGAACTTAAGAGTACAACAGTGTTTGGGGGCAAATATCCTCAAGGAGGGGGTCTGATCCGAAACTCCAGCCAGATTCTGAATACCCTGAGTGGCTGTTGCACCTGCTCGACAAGCG CCTATGCTGAGTNAGCTCCGGAGGAAA ATGCCAA ACGCTCCCC ]
[+] EMBL AU030072 [ CGATGC TGCTAAAACCCCTGTGCTCAGCAAAGAACTTAAGNGTACAACAGTGTTT GGGGCAAATATCCTCAAGGA GGGGTCTGATCCGAAACTCCAGCCAGATTCTGAATACCCTGAGTGGCTGTGGCACCTGCTCGACAAGCGCCCTATGCTGAGTGAGCTGCGGAGGAAAGATGCCAAGACGCTCCCCTATGAAGACCTGAAACGGTTCGTCAAGCTGGTGAACCGAGCTCGGATCAAGGAGCAGAATGCCCTCACTGCAAAGAACTGATCTGGATACTCTCTGGAGGTTCCATCATCTGTTTTTCACTACATGATTTACTGTTGAAATATGCTAAGCTGTGCACTGTAATAATGTAGTGACCTGGAACATTAGAATATTTAAGAGATGCTTCCTAATTTTTGTTNTCTGGCAAAAAAAAAAAA ]
[+] EMBL AU172900 [ AAAACCCCTGTGCTCAGCAAAGAACTTAAGAGTCCAACAGTGTTT GGGGCAAATATCCTCAAGGA GGGGTCTGATCCGAAACTCCAGCCAGATTCTGAATACCCTGAGTGGCTGTGGCACCTGCTCGACAAGCGCCCTATGCTGAGTGAGCTGCGGAGGAAAGATGCCAAGACGCTCCCCTATGAAGACCTGAAACGGTTCGTCAAGCTGGTGAACCGAGCTCGGATCAAGGAGCAGAATGCCCTCACTGCAAAGAACTGATCTGGATACTCTCTGGAGGTTCCATCATCTGTTTTTCACTACATGATTTACTGTTGAAATATGCTAAGCTGTGCACTGTAATAATGTAGTGACCTGGAACATTAGAATATTTAAGAGATGCTTCCTAATTTTTGTTTTCTGGCAAAATGCTTTAGCAAAAAAAAAA]
consensusID : consensus_12457#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 511 fasta sequence
[CGATGCTGCTAAAACCCCTGTGCTCAGCAAAGAACTTAAGAGTACAACAGTGTTTGGGCCAAATATCCTCAAGGAGGGGTCTGATCCGAAACTCCAGCCAGATTCTGAATACCCTGAGTGGCTGTGGCACCTGCTCGACAAGCGCCCTATGCTGAGTGAGCTGCGGAGGAAAGACGCCAAGACGCTCCCCTATGAAGACCTGAAACGGTTCGTCAAGCTGGTGAACCGAGCTCGGATCAAGGAGCAGAATGCCCTCACTGCAAAGAACTGATCTGGATACTCTCTGGAGGTTCCATCATCTGTTTTTCACTACATGATTTACTGTTGAAATATGCTAACTGTGCACTGTAATAATGTAGTGACCTGGAACATTAGAATATTTAAGAGATGCTTCCTAATTTTTGTTTTCTGCAAATGCTTTACCAAATTACTTCCTCCGTTTCACATGTAAGTCATTCTAGCATTTTCCACATTCACTTTGATGTTAATGAATGTAGACATATATATCTAA]
[+] EMBL BI805692 [CGATGCTGCTAAAACCCCTGTGCTCAGCAAAGAACTTAAGAGTACAACAGTGTTTGGGCCAAATATCCTCAAGGAGGGGTCTGATCCGAAACTCCAGCCAGATTCTGAATACCCTGAGTGGCTGTGGCACCTGCTCGACAAGCGCCCTATGCTGAGTGAGCTGCGGAGGAAAGACGCCAAGACGCTCCCCTATGAAGACCTGAAACGGTTCGTCAAGCTGGTGAACCGAGCTCGGATCAAGGAGCAGAATGCCCTCACTGCAAAGAACTGATCTGGATACTCTCTGGAGGTTCCATCATCTGTTTTTCACTACATGATTTACTGTTGAAATATGCTAACTGTGCACTGTAATAATGTAGTGACCTGGAACATTAGAATATTTAAGAGATGCTTCCTAATTTTTGTTTTCTGCAAATGCTTTACCAAATTACTTCCTCCGTTTCACATGTAAGTCATTCTAGCATTTTCCACATTCACTTTGATGTTAATGAATGTAGACATATATATCTAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12457#0 TTGCGCCGCCGCCAAGACGAGTCGCGGCTGCCGATCTCCATCTGGCGAGGAGAGTAGGGG 60
consensus_12457#1 ------------------------------------------------------------
consensus_12457#0 AGGGGATCCTGTTAAAAGCTTCCATCCAGGAATGGCAATGGCATTGAGAAGAGTACTGAA 120
consensus_12457#1 ------------------------------------------------------------
consensus_12457#0 ACATGGTGTAATCCCAAGAGATGCAGCTCAAGTAGTTGGCATAAGAGGATTTGCAATTGC 180
consensus_12457#1 ------------------------------------------------------------
consensus_12457#0 AAGCAAGGCAAAGAAGGCGGAAAGGGTNCGGCCGATGCTGCTAAAACCCCTGTGCTCAGC 240
consensus_12457#1 --------------------------------CGATGCTGCTAAAACCCCTGTGCTCAGC 28
****************************
consensus_12457#0 AAAGAACTTAAGAGTACAACAGTGTTTGGGGCAAATATCCTCAAGGAGGGGTCTGATCCG 300
consensus_12457#1 AAAGAACTTAAGAGTACAACAGTGTTTGGGCCAAATATCCTCAAGGAGGGGTCTGATCCG 88
****************************** *****************************
consensus_12457#0 AAACTCCAGCCAGATTCTGAATACCCTGAGTGGCTGTGGCACCTGCTCGACAAGCGCCCT 360
consensus_12457#1 AAACTCCAGCCAGATTCTGAATACCCTGAGTGGCTGTGGCACCTGCTCGACAAGCGCCCT 148
************************************************************
consensus_12457#0 ATGCTGAGTGAGCTGCGGAGGAAAGATGCCAAGACGCTCCCCTATGAAGACCTGAAACGG 420
consensus_12457#1 ATGCTGAGTGAGCTGCGGAGGAAAGACGCCAAGACGCTCCCCTATGAAGACCTGAAACGG 208
************************** *********************************
consensus_12457#0 TTCGTCAAGCTGGTGAACCGAGCTCGGATCAAGGAGCAGAATGCCCTCACTGCAAAGAAC 480
consensus_12457#1 TTCGTCAAGCTGGTGAACCGAGCTCGGATCAAGGAGCAGAATGCCCTCACTGCAAAGAAC 268
************************************************************
consensus_12457#0 TGATCTGGATACTCTCTGGAGGTTCCATCATCTGTTTTTCACTACATGATTTACTGTTGA 540
consensus_12457#1 TGATCTGGATACTCTCTGGAGGTTCCATCATCTGTTTTTCACTACATGATTTACTGTTGA 328
************************************************************
consensus_12457#0 AATATGCTAAGCTGTGCACTGTAATAATGTAGTGACCTGGAACATTAGAATATTTAAGAG 600
consensus_12457#1 AATATGCTAA-CTGTGCACTGTAATAATGTAGTGACCTGGAACATTAGAATATTTAAGAG 387
********** *************************************************
consensus_12457#0 ATGCTTCCTAATTTTTGTTTTCTGGCAAAAAAAAAAAACAAAAAAAAAA----------- 649
consensus_12457#1 ATGCTTCCTAATTTTTGTTTTCTGC--AAATGCTTTACCAAATTACTTCCTCCGTTTCAC 445
************************ *** * **** *
consensus_12457#0 ------------------------------------------------------------
consensus_12457#1 ATGTAAGTCATTCTAGCATTTTCCACATTCACTTTGATGTTAATGAATGTAGACATATAT 505
consensus_12457#0 ------
consensus_12457#1 ATCTAA 511
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||