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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12469#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1375 fasta sequence
[CGTTCACCCACGCCACGCCGCCACCGCCTCGCTTTTCCTTCTCCACCATTTCTCCTTGTCTCCCACCACCACTTCCCCCCTTCTCCGATCCCTCCTCCCATGGACGCCGCCAAGGATACCACCGCCGCCGCCGCCGACCAAAACCCTACCCCCAACCCTCCCACCGCCGCAGCTCCACCCGATGACTCCGCGGCGGCGGCGGCGGCGGGGAGACGGCCCTTCACCAGCCTCACCCAGGAGGAGGCCGACCTCGCCCTCGCCCGCGTCCTCCAGGAGCAGGAGCGGGCGTACATGATGCTCAGCGCGCACCACGGCGGCGACTACGCGGCCTCCGATGGTGGGAGCTACGAGTTTGACGAGGAAGGGGAGGGGAGCGATTTTGAGGACGAGGATGGGGACGGGGACGGCGACGGGGAGGCGCTGGATGAGGACGAGGAGGTGGCCGACGCAGACGCAGACGCCGCCGGTGACCCGGCTGAGTTGGACCCCGCGCGGTACGAGGACGACGAGGCCTTCGCGCGGGCGCTGCAGGACGCCGAGGAGCGCGAGGTCGCCGGCCGCCTCATGGCGCTCGCGGGCCTCAGTGATTGGCGAGTGATGGACCATGATGATGACGATGTTGATGATGATGATGATGAGGATGATGATGATGATGATGATGATGAAGATGAAGACGGGGATGATCCACAGGATG-CATGGGAAGATGTTGATCCAGATGAATATTCTTATGAGGAGCTGGTTGCATTGGGTGAAGTAGTTGGTACGGAAAGCAGAGGCCTCTCTGCTGATACACTTGCTTCATTACCTTCAATAACTTATCGAGCACAAGATAA-GCAAGACGGCAACATGGAACAATGTGTTATTTGCCGTGTGGAATTTGAGGAAGGTGAATCATTGGTTGCACTTCCTTGCAAGCATTCATACCATTCTGAATGCATAAACCAATGGCTGCAATTAAATAAGGTATGCCCTATGTGCAGTGCTGAAGTTCCTACTTCACAGGACA-CCCGGGCATGACATCACTACATATTGTAGCCA-TTATGGGCGTATAATTTAAAAGAAGTAGCGGCAGCTTGATACTTTCTGTCATCGGTGAAATGGAAGCATCAGGAGCTGGTGGATTGTTCAGGTCTCTGTACTTGTGTGCTTCCTTTGCCATGCCGCTACATTGGGTCGTGGTTAAGACGCTCATTGTCGCCCATGTATGATTTGATTAGATGTGAAATAGTTATTACATGGTTGCATCATTCAAA-TTCAAAGCAATTAATTTATAGTCTCCTGGTGGCCTGAGGCCTGTTGTAGCCTATAAGTTCCGAAAAAATTTTGAAAATATACTCTTTCTTTTTCATATTTTACATTTATATACACGTCTGAG]
[+] EMBL CB666445 [CGTTCACCCACGCCACGCCGCCACCGCCTCGCTTTTCCTTCTCCACCATTTCTCCTTGTCTCCCACCACCACTTCCCCCCTTCTCCGATCCCTCCTCCCATGGACGCCGCCAAGGATACCACCGCCGCCGCCGCCGACCAAAACCCTACCCCCAACCCTCCCACCGCCGCAGCTCCACCCGATGACTCCGCGGCGGCGGCGGCGGCGGGGAGACGGCCCTTCACCAGCCTCACCCAGGAGGAGGCCGACCTCGCCCTCGCCCGCGTCCTCCAGGAGCAGGAGCGGGCGTACATGATGCTCAGCGCGCACCACGGCGGCGACTACGCGGCCTCCGATGGTGGGAGCTACGAGTTTGACGAGGAAGGGGAGGGGAGCGATTTTGAGGACGAGGATGGGGACGGGGACGGCGACGGGGAGGCGCTGGATGAGGACGAGGAGGTGGCCGACGCAGACGCAGACGCCGCCGGTGACCCGGCTGAGTTGGACCCCGCGCGGTACGAGGACGACGAGGCCTTCGCGCGGGCGCTGCAGGACGCCGAGGAGCGCGAGGTCGCCGGCCGCCTCATGGCGCTCGCGGGCCTCAGTGATTGGCGAGTGATGGACCATGATGATGACGATGTTGATGATGATGATGATGAGGATGATGATGATGATGATGATGATGAAGATGAAGACGGGGATGATCCACAGGATG CATGGGAAGATGTTGATCCAGATGAATATTCTTATGAGGAGCTGGTTGCATTGGGTGAAGTAGTTGGTACGGAAAGCAGAGGCCTCTCTGCTGATACACTTGCTTCATTACCTTCAATAACT ]
[+] EMBL CB666354 [CGTTCACCCACGCCACGCCGCCACCGCCTCGCTTTTCCTTCTCCACCATTTCTCCTTGTCTCCCACCACCACTTCCCCCCTTCTCCGATCCCTCCTCCCATGGACGCCGCCAAGGATACCACCGCCGCCGCCGCCGACCAAAACCCTACCCCCAACCCTCCCACCGCCGCAGCTCCACCCGATGACTCCGCGGCGGCGGCGGCGGCGGGGAGACGGCCCTTCACCAGCCTCACCCAGGAGGAGGCCGACCTCGCCCTCGCCCGCGTCCTCCAGGAGCAGGAGCGGGCGTACATGATGCTCAGCGCGCACCACGGCGGCGACTACGCGGCCTCCGATGGTGGGAGCTACGAGTTTGACGAGGAAGGGGAGGGGAGCGATTTTGAGGACGAGGATGGGGACGGGGACGGCGACGGGGAGGCGCTGGATGAGGACGAGGAGGTGGCCGACGCAGACGCAGACGCCGCCGGTGACCCGGCTGAGTTGGACCCCGCGCGGTACGAGGACGACGAGGCCTTCGCGCGGGCGCTGCAGGACGCCGAGGAGCGCGAGGTCGCCGGCCGCCTCATGGCGCTCGCGGGCCTCAGTGATTGGCGAGTGATGGACCATGATGATGACGATGTTGATGATGATGATGATGAGGATGATGATGATGATGATGATGATGAAGATGAAGACGGGGATGATCCACAGGATG CATGGGAAGATGTTGATCCAGATGAATATTCTTATGAGGAGCTGGTTGCATTGGGTGAAGTAGTTGGTACGGAAAGCAGAGGCCTCTCTGCTGATACACTTGCTTCATTACCTTCAATAA ]
[+] EMBL AK073266 [ TTCTCCACCATTTCTCCTTGTCTCCCACCACCACTTCCCCCCTTCTCCGATCCCTCCTCCCATGGACGCCGCCAAGGATACCACCGCCGCCGCCGCCGACCAAAACCCTACCCCCAACCCTCCCACCGCCGCAGCTCCACCCGATGACTCCGCGGCGGCGGCGGCGGCGGGGAGACGGCCCTTCACCAGCCTCACCCAGGAGGAGGCCGACCTCGCCCTCGCCCGCGTCCTCCAGGAGCAGGAGCGGGCGTACATGATGCTCAGCGCGCACCACGGCGGCGACTACGCGGCCTCCGATGGTGGGAGCTACGAGTTTGACGAGGAAGGGGAGGGGAGCGATTTTGAGGACGAGGATGGGGACGGGGACGGCGACGGGGAGGCGCTGGATGAGGACGAGGAGGTGGCCGACGCAGACGCAGACGCCGCCGGTGACCCGGCTGAGTTGGACCCCGCGCGGTACGAGGACGACGAGGCCTTCGCGCGGGCGCTGCAGGACGCCGAGGAGCGCGAGGTCGCCGGCCGCCTCATGGCGCTCGCGGGCCTCAGTGATTGGCGAGTGATGGACCATGATGATGACGATGTTGATGATGATGATGATGAGGATGATGATGATGATGATGATGATGAAGATGAAGACGGGGATGATCCACAGGATG CATGGGAAGATGTTGATCCAGATGAATATTCTTATGAGGAGCTGGTTGCATTGGGTGAAGTAGTTGGTACGGAAAGCAGAGGCCTCTCTGCTGATACACTTGCTTCATTACCTTCAATAACTTATCGAGCACAAGATAA GCAAGACGGCAACATGGAACAATGTGTTATTTGCCGTGTGGAATTTGAGGAAGGTGAATCATTGGTTGCACTTCCTTGCAAGCATTCATACCATTCTGAATGCATAAACCAATGGCTGCAATTAAATAAGGTATGCCCTATGTGCAGTGCTGAAGTTCCTACTTCACAGGACA CCCGGGCATGACATCACTACATATTGTAGCCA TTATGGGCGTATAATTTAAAAGAAGTAGCGGCAGCTTGATACTTTCTGTCATCGGTGAAATGGAAGCATCAGGAGCTGGTGGATTGTTCAGGTCTCTGTACTTGTGTGCTTCCTTTGCCATGCCGCTACATTGGGTCGTGGTTAAGACGCTCATTGTCGCCCATGTATGATTTGATTAGATGTGAAATAGTTATTACATGGTTGCATCATTCAAA TTCAAAGCAATTAATTTATAGTCTCCTGGTGGCCTGAGGCCTGTTGTAGCCTATAAGTTCCGAAAAAATTTTGAAAATATACTCTTTCTTTTTCATATTTTACATTTATATACACGTCTGAG]
[+] EMBL OSR29471A [ GCCGCCAAGGATACCATNGCCGCCGCCGCCGACCAAAACCCTACCCCCAACCCTCCCACCGCCGCAGCTCCACCCGATGACTCCGCGGCGGCGGCGGCGGCGGGGAGACGGCCCTTCACCAGCNTCACCCAGGAGGAGGCCGACCTCGCCCTTGCCCGCTTCCTCCAGGAGCAGGAGCGGGCGTACATNATGCTCAGCGCGCACCACGGCGGCGACTACGCGGCCTCCGATGGTG ]
[-] EMBL CB666446 [ GCAGGACGCCGAGGAGCGCGAGGTCGCCGGCCGCCTCATGGCGCTCGCGGGCCTCAGTGATTGGCGAGTGATGGACCATGATGATGACGATGTTGATGATGATGATGATGAGGATGATGATGATGATGATGATGATGAAGATGAAGACGGGGATGATCCACAGGATG CATGGGAAGATGTTGATCCAGATGAATATTCTTATGAGGAGCTGGTTGCATTGGGTGAAGTAGTTGGTACGGAAAGCAGAGGCCTCTCTGCTGATACACTTGCTTCATTACCTTCAATAACTTATCGAGCACAAGATAA GCAAGACGGCAACATGGAACAATGTGTTATTTGCCGTGTGGAATTTGAGGAAGGTGAATCATTGGTTGCACTTCCTTGCAAGCATTCATACCATTCTGAATGCATAAACCAATGGCTGCAATTAAATAAGGTATGCCCTATGTGCAGTGCTGAAGTTCCTACTTCACAGGACA CCCGGGCATGACATCACTACATATTGTAGCCA TTATGGGCGTATAATTTAAAAGAAGTAGCGGCAGCTTGATACTTTCTGTCATCGGTGAAATGGAAGCATCAGGAGCTGGTGGATTGTTCAGGTCTCTGTACTTGTGTGCTTCCTTTGCCATGCCGCTACATTGGGTCGTGGTTAAGACGCTCATTGTCGCCCATGTATGATTTGATTAGATGTGAAATAGTTATTACATGGTTGCATCATTCAAA TTCAAAGCAATTAATTTATAGTCTCCTGGTGGCCTGAGGCCTGTTGTAGCCTATAAGTTCCGAAAAAA TTTGAAA ]
[-] EMBL CB666355 [ GAGTGATGGACCATGATGATGACGATGTTGATGATGATGATGATGAGGATGATGATGATGATGATGATGATGAAGATGAAGACGGGGATGATCCACAGGATG CATGGGAAGATGTTGATCCAGATGAATATTCTTATGAGGAGCTGGTTGCATTGGGTGAAGTAGTTGGTACGGAAAGCAGAGGCCTCTCTGCTGATACACTTGCTTCATTACCTTCAATAACTTATCGAGCACAAGATAA GCAAGACGGCAACATGGAACAATGTGTTATTTGCCGTGTGGAATTTGAGGAAGGTGAATCATTGGTTGCACTTCCTTGCAAGCATTCATACCATTCTGAATGCATAAACCAATGGCTGCAATTAAATAAGGTATGCCCTATGTGCAGTGCTGAAGTTCCTACTTCACAGGACA CCCGGGCATGACATCACTACATATTGTAGCCA TTATGGGCGTATAATTTAAAAGAAGTAGCGGCAGCTTGATACTTTCTGTCATCGGTGAAATGGAAGCATCAGGAGCTGGTGGATTGTTCAGGTCTCTGTACTTGTGTGCTTCCTTTGCCATGCCGCTACATTGGGTCGTGGTTAAGACGCTCATTGTCGCCCATGTATGATTTGATTAGATGTGAAATAGTTATTACATGGTTGCATCATTCAAA TTCAAAGCAATTAATTTATAGTCTCCTGGTGGCCTGAGGCCTGTTGTAGCCTATAAGTTCCGAAAAAATTTTGAAAA ]
[+] EMBL BM420038 [ CCACAGGATGCCATGGGAAGATGTTGATCCAGATGAATATTCTTATGAGGAGCTGGTTGCATTGGGTGAAGTAGTTGGTACGGAAAGCAGAGGCCTCTCTGCTGATACGCTTGCTTCATTACCTTCAATAACTTATCGAGCACAAGATAA GCAAGACGGCAACATGGAACAATGTGTTATTTGCCGTGTGGAATTTGAGGAAGGTGAATCATTGGTTGCACTTCCTTGCAAGCATTCATACCATTCTGAATGCATAAACC ATGGCTGCAATTAAATAAGGTATGCCCTATGTGCAGTGCTGAAGTTCCTACTTCACAGGACA CCCGGGCATGACATCACTACATATTGTAGCCA TTATGGGCGTATAATTTAAAAGAAGTAGCGGCAGCTTGATACTTTCTGTCATCGGTGAAATGGAAGCATCAGGAGCTGGTGGATTGTTCAGGTCTCTGTACTTGTGTGCTTCCTTTGCCATGCCGCTACATT GGTCGTGGTTAAGACGCTCATTGTCGCCCATGTATGATTTGATTAGATGTGAAATAGTTATTACATGGTTGCATCATTCAAA aaaaaaa ]
[+] EMBL BI809614 [ AGATAACGCCAGACGGCAACATGGAACAATGTGTTATTTCCCGTGTGGAATTTGAGGAAGGTGAATCATTGGTTGCACTTCCTTGCAAGCATTCATACCATTCTGAATGCATAAACCAATGGCTGCAATTAAATAAGGTATGCCCTATGTGCAGTGCTGAAGTTCCTACTTCACAGGACACCCCGGGCATGACATCACTACATATTGTAGCCACTTATGGGCGTATAATTTAAAAGAAGTAGCGGCAGCTTGATACTTTCTGTCATCGGTGAAATGGAAGCATCAGGAGCTGGTGGATTGTTCAGGTCTCTGTACTTGTGTGCTTCCTTTGCCATGCCGCTACATTGGGTCGTGGTTAAGACGCTCATTGTCGCCCATGTATGATTTGATTAGATGTGAAATAGTTATTACATGGTTGCATCATTCAAA aaaaaa ]
[+] EMBL C27882 [ GACGGCAACATGGAACAATGTGTTATTTGCCGTGTGGAATTTGAGGAAGGTGAATCATTGGTTGCACTTCCTTGCAAGCATTCATACCATTCTGAATGCATAAACCAATGGCTGCAATTAAATAAGGTATGCCCTATGTGCAGTGCTGAAGTTCCTACTTCACAGGACA CCCGGGCATGACATCACTACATATTGTAGCCA TTATGGGCGTATAATTTAAAAGAAGTAGCGGCA TTGATACTTTCTGTCATCGGTGAAATGGAAGCATCAGGAGCTGGTGGATTGTTCAGGTCTCTGTACTTGTGTGCTTCCTTTGCCATGCCGCTACATTGGGTCGTGGTTAAGACGCTCATTGTCGCCCATGTATGATTTGATTAGATGTGAAATAGTTATTACATGGTTGCATCATTCAAATTTCAAAGCAATTAATTTATA ]
consensusID : consensus_12469#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 461 fasta sequence
[ACGGCAACATGGANCAATGTGTTATTTGCCGTGTGNAATTTGAGGAAGGTGAATCATTGGTTGCANTTCCTTGCAAGCATTCATACCATTCTGAATGCATAAACCAATGGCTGCAATTAAATAAGGTATGCCCTATGTGCAGTGCTNAAGTTCCTACTTCACAGGACACCCGGGCATGACATCACTACATATTGTAGCCATTATGGGCGTATAATTTAAAAGAAGTAGCGGCAGCTTGATACTTTCTGTCATCGGTGAAATGGAAGCATCAGGAGCTGGTGGATTGTTCAGGTCTCTGTACTTGTGTGCTTCCTTTGCCATGCCGCTACATTGGGTCGTGGTTAAGACGCTCATTGTCGCCCATGTATGATTTGATTAGATGTGAAATAGTTATTACATGGTTGCATCATTCAAATTCAAAGCAATTAATTTATAGTCTCCAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU100891 [ACGGCAACATGGANCAATGTGTTATTTGCCGTGTGNAATTTGAGGAAGGTGAATCATTGGTTGCANTTCCTTGCAAGCATTCATACCATTCTGAATGCATAAACCAATGGCTGCAATTAAATAAGGTATGCCCTATGTGCAGTGCTNAAGTTCCTACTTCACAGGACACCCGGGCATGACATCACTACATATTGTAGCCATTATGGGCGTATAATTTAAAAGAAGTAGCGGCAGCTTGATACTTTCTGTCATCGGTGAAATGGAAGCATCAGGAGCTGGTGGATTGTTCAGGTCTCTGTACTTGTGTGCTTCCTTTGCCATGCCGCTACATTGGGTCGTGGTTAAGACGCTCATTGTCGCCCATGTATGATTTGATTAGATGTGAAATAGTTATTACATGGTTGCATCATTCAAATTCAAAGCAATTAATTTATAGTCTCCAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12469#0 CGTTCACCCACGCCACGCCGCCACCGCCTCGCTTTTCCTTCTCCACCATTTCTCCTTGTC 60
consensus_12469#1 ------------------------------------------------------------
consensus_12469#0 TCCCACCACCACTTCCCCCCTTCTCCGATCCCTCCTCCCATGGACGCCGCCAAGGATACC 120
consensus_12469#1 ------------------------------------------------------------
consensus_12469#0 ACCGCCGCCGCCGCCGACCAAAACCCTACCCCCAACCCTCCCACCGCCGCAGCTCCACCC 180
consensus_12469#1 ------------------------------------------------------------
consensus_12469#0 GATGACTCCGCGGCGGCGGCGGCGGCGGGGAGACGGCCCTTCACCAGCCTCACCCAGGAG 240
consensus_12469#1 ------------------------------------------------------------
consensus_12469#0 GAGGCCGACCTCGCCCTCGCCCGCGTCCTCCAGGAGCAGGAGCGGGCGTACATGATGCTC 300
consensus_12469#1 ------------------------------------------------------------
consensus_12469#0 AGCGCGCACCACGGCGGCGACTACGCGGCCTCCGATGGTGGGAGCTACGAGTTTGACGAG 360
consensus_12469#1 ------------------------------------------------------------
consensus_12469#0 GAAGGGGAGGGGAGCGATTTTGAGGACGAGGATGGGGACGGGGACGGCGACGGGGAGGCG 420
consensus_12469#1 ------------------------------------------------------------
consensus_12469#0 CTGGATGAGGACGAGGAGGTGGCCGACGCAGACGCAGACGCCGCCGGTGACCCGGCTGAG 480
consensus_12469#1 ------------------------------------------------------------
consensus_12469#0 TTGGACCCCGCGCGGTACGAGGACGACGAGGCCTTCGCGCGGGCGCTGCAGGACGCCGAG 540
consensus_12469#1 ------------------------------------------------------------
consensus_12469#0 GAGCGCGAGGTCGCCGGCCGCCTCATGGCGCTCGCGGGCCTCAGTGATTGGCGAGTGATG 600
consensus_12469#1 ------------------------------------------------------------
consensus_12469#0 GACCATGATGATGACGATGTTGATGATGATGATGATGAGGATGATGATGATGATGATGAT 660
consensus_12469#1 ------------------------------------------------------------
consensus_12469#0 GATGAAGATGAAGACGGGGATGATCCACAGGATGCATGGGAAGATGTTGATCCAGATGAA 720
consensus_12469#1 ------------------------------------------------------------
consensus_12469#0 TATTCTTATGAGGAGCTGGTTGCATTGGGTGAAGTAGTTGGTACGGAAAGCAGAGGCCTC 780
consensus_12469#1 ------------------------------------------------------------
consensus_12469#0 TCTGCTGATACACTTGCTTCATTACCTTCAATAACTTATCGAGCACAAGATAAGCAAGAC 840
consensus_12469#1 ----------------------------------------------------------AC 2
**
consensus_12469#0 GGCAACATGGAACAATGTGTTATTTGCCGTGTGGAATTTGAGGAAGGTGAATCATTGGTT 900
consensus_12469#1 GGCAACATGGANCAATGTGTTATTTGCCGTGTGNAATTTGAGGAAGGTGAATCATTGGTT 62
*********** ********************* **************************
consensus_12469#0 GCACTTCCTTGCAAGCATTCATACCATTCTGAATGCATAAACCAATGGCTGCAATTAAAT 960
consensus_12469#1 GCANTTCCTTGCAAGCATTCATACCATTCTGAATGCATAAACCAATGGCTGCAATTAAAT 122
*** ********************************************************
consensus_12469#0 AAGGTATGCCCTATGTGCAGTGCTGAAGTTCCTACTTCACAGGACACCCGGGCATGACAT 1020
consensus_12469#1 AAGGTATGCCCTATGTGCAGTGCTNAAGTTCCTACTTCACAGGACACCCGGGCATGACAT 182
************************ ***********************************
consensus_12469#0 CACTACATATTGTAGCCATTATGGGCGTATAATTTAAAAGAAGTAGCGGCAGCTTGATAC 1080
consensus_12469#1 CACTACATATTGTAGCCATTATGGGCGTATAATTTAAAAGAAGTAGCGGCAGCTTGATAC 242
************************************************************
consensus_12469#0 TTTCTGTCATCGGTGAAATGGAAGCATCAGGAGCTGGTGGATTGTTCAGGTCTCTGTACT 1140
consensus_12469#1 TTTCTGTCATCGGTGAAATGGAAGCATCAGGAGCTGGTGGATTGTTCAGGTCTCTGTACT 302
************************************************************
consensus_12469#0 TGTGTGCTTCCTTTGCCATGCCGCTACATTGGGTCGTGGTTAAGACGCTCATTGTCGCCC 1200
consensus_12469#1 TGTGTGCTTCCTTTGCCATGCCGCTACATTGGGTCGTGGTTAAGACGCTCATTGTCGCCC 362
************************************************************
consensus_12469#0 ATGTATGATTTGATTAGATGTGAAATAGTTATTACATGGTTGCATCATTCAAATTCAAAG 1260
consensus_12469#1 ATGTATGATTTGATTAGATGTGAAATAGTTATTACATGGTTGCATCATTCAAATTCAAAG 422
************************************************************
consensus_12469#0 CAATTAATTTATAGTCTCCTGGTGGCCTGAGGCCTGTTGTAGCCTATAAGTTCCGAAAAA 1320
consensus_12469#1 CAATTAATTTATAGTCTCCAAAAAAAAAAAAAAAAAAAA--------------------- 461
******************* *
consensus_12469#0 ATTTTGAAAATATACTCTTTCTTTTTCATATTTTACATTTATATACACGTCTGAG 1375
consensus_12469#1 -------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||