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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12502#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 988 fasta sequence
[GCCGCTCTTTAGAGCAATAAATCTCTGCAACAATAGTCTTATAACTATCTTCAGCAAAACTGCAACACATCATACATGATGACTTGTGACTGTTACAAGAGTACTTAACAAATCGGTATATCTCACAAACCACAAAAAAGAAAAACAGACATCTTATTACAAGCAAGGACCTCACTCTGTGTTCCAAGACTTGC-AAAGACCAACCAAGCTTAATTACCCTTCAACATCAGTTTACATTCCGACCGACCGACCGATTGACTCCCAAATAACTCAATTATTACCCAGGAAAAGGGGGAGAAAAAGAAAAAAGGAAAACATATTGGGCTCCCTATAACTGACTCTAGACTAATAACTTATTAAACGCACCTCTAAGCAAAAGGTATAAATGAAAGAATATGGATCTGAGACCGTCCAT-TGCGATGCTTCTGGACACACGGCTGG-TAACTTTTTTTGATTACAAGATATGAAACAATGAAGAGGTATGAACAGATAGATCCTAGGGACATAAATGAAGGCATATTTATATCAGTGCTGAATTCCTAAATACGCGATCTGGCAGTAGAGAACTTGTCCACCGATGCCCCAGAAGTTTGTTGCCGGCCATTCTGTTACAATATCCCATCCCAGGTTGTTCACCTCAGGGTTGCACCTTATGGGATGCAGCCATGGAGCGTAACCTACCAGCAATCTCCGTAAAGGTTGGCCGTTCGGATGGTTCTGTCGACCAACATTGCTCCATTAGTGATCTCCACTCTGGATCACAAGAGTCAGGTACTGCTGGTCGTAGAGTGTTGCTCACAATGCCACCTATAATAACACCATAATGCAGATCTGCGTATGGTTCTTCTCCTGTTAAGAGTTCCCAGAGAACAATCCCAAAGGAGAACACATCAACCTTTTCGGAGACCAAGCTGCTACTTCCATTCAGAAGTTCTGGAGCCATCCATGGAAGAGTCCCCCTCACACCACCAGAGATGAGGGTCTGACA]
[+] EMBL AU225614 [GCCGCTCTTTAGAGCAATAAATCTCTGCAACAATAGTCTTATAACTATCTTCAGCAAAACTGCAACACATCATACATGATGACTTGTGACTGTTACAAGAGTACTTAACAAATCGGTATATCTCACAAACCACAAAAAAGAAAAACAGACATCTTATTACAAGCAAGGACCTCACTCTGTGTTCCAAGACTTGC AAAGACCAACCAAGCTTAATTACCCTTCAACATCAGTTTACATTCCGACCGAGCGg ]
[-] EMBL BI812577 [ ttttttTAAATCTCTGCAACAATAGTCTTATAACTATCTTCAGCAAAACTGCAACACATCATACATGATGACTTGTGACTGTTACAAGAGTACTTAACAAATCGGTATATCTCACATACCACAAAAAAGAAAAACAGACATCTTATTACAAGCAAGGACCTCACTCTGTGTTCCAAGACTTGCAAAAGACCAACCAAGCTTAATTACCCTTCAACATCAGTTTACATTCAGACCGACCGACCGATTGACTCCCAAATAACTCAATTATTACCCAGGAAAAGGGGGAGAAAAAGAAAAAAGGAAAACATA TGGGCTCCCTATAACTGACTCTAGACTAATAACTTATTAAACGCACCTCTAAGCAAAAGGTATAAATGAAAGAATATGGATCTGAGACCGTCCATGTGCGATGCTTCTAGACACA GG TGGTTAAATTTTTTTGATTACAAGATATGAAACCATGAAGAGGTCTGAACAG ]
[+] EMBL CB673541 [ C AAAGACCAACCAAGCTTAATTACCCTTCAACATCAGTTTACATTCCGACCGACCGACCGATTGACTCCCAAATAACTCAATTATTACCCAGGAAAAGGGGGAGAAAAAGAAAAAAGGAAAACATATTGGGCTCCCTATAACTGACTCTAGACTAATAACTTATTAAACGCACCTCTAAGCAAAAGGTATAAATGAAAGAATATGGATCTGAGACCGTCCAT TGCGATGCTTCTGGACACACGGCTGG TAACTTTTTTTGATTACAAGATATGAAACAATGAAGAGGTATGAACAGATAGATCCTAGGGACATAAATGAAGGCATATTTATATCAGTGCTGAATTCCTAAATACGCGATCTGGCAGTAGAGAACTTGTCCACCGATGCCCCAGAAGTTTGTTGCCGGCCATTCTGTTACAATATCCCATCCCAGGTTGTTCACCTCAGGGTTGCACCTTATGGGATGCAGCCATGGAGCGTAACCTACCAGCAATCTCCGTAAAGGTTGGCCGTTCGGATGGTTCTGTCGACCAACATTGCTCCATTAGTGATCTCCACTCTGGATCACAAGAGTCAGGTACTGCTGGTCGTAGAGTGTTGCTCACAATGCCACCTATAATAACACCATAATGCAGATCTGCGTATGGTTCTTCTCCTGTTAAGAGTTCCCAGAGAACAATCCCAAAGGAGAACACATCAACCTTTTCGGAGACCAAGCTGCTACTTCCATTCAGAAGTTCTGGAGCCATCCATGGAAGAGTCCCCCTCACACCACCAGAGATGAGGGTCTGACA]
[+] EMBL CB655741 [ AACCAAGCTTAATTACCCTTCAACATCAGTTTACATTCCGACCGACCGACCGATTGACTCCCAAATAACTCAATTATTACCCAGGAAAAGGGGGAGAAAAAGAAAAAAGGAAAACATATTGGGCTCCCTATAACTGACTCTAGACTAATAACTTATTAAACGCCCCTCTAAGCAAAAGGTATAAATGAAAGAATATGGATCTGAGACCGTCCAT TGCGATGCTTCTGGACACACGGCTGG TAACTTTTTTTGATTACAAGATATGAAACAATGAAGAGGTATGAACAGATAGATCCTAGGGACATAAATGAAGGCATATTTATATCAGTGCTGAATTCCTAAATACGCGATCTGGCAGTAGAGAACTTGTCCACCGATGCCCCAGAAGTTTGTTGCCGGCCATTCTGTTACAATATCCCATCCCAGGTTGTTCACCTCAGGGTTGCACCTTATGGGATGCAGCCATGGAGCGTAACCTACCAGCAATCTCCGTAAAGGTTGGCCGTTCGGATGGTTCTGTCGACCAACATTGCTCCATTAGTGATCTCCACTCTGGATCACAAGAGTCAGGTACTGCTGGTCGTAGAGTGTTGCTCACAATGCCACCTATAATAACACCATAATGCAGATCTGCGTATGGTTCTTCTCCTGTTAAGAGTTCCCAGAGAACAATCCCAAAGGAGAACACATCAACCTTTTCGGAGACCAAGCTGCT ]
[+] EMBL CB655774 [ AACCAAGCTTAATTACCCTTCAACATCAGTTTACATTCCGACCGACCGACCGATTGACTCCCAAATAACTCAATTATTACCCAGGAAAAGGGGGAGAAAAAGAAAAAAGGAAAACATATTGGGCTCCCTATAACTGACTCTAGACTAATAACTTATTAAACGCACCTCTAAGCAAAAGGTATAAATGAAAGAATATGGATCTGAGACCGTCCAT TGCGATGCTTCTGGACACACGGCTGG TAACTTTTTTTGATTACAAGATATGAAACAATGAAGAGGTATGAACAGATAGATCCTAAGGACATAAATGAAGGCATATTTATATCAGTGCTGAATTCCTAAATACGCGATCTGGCAATAGAGAACTTGTCCACCGATGCCCCAGAAGTTTGTTGCCGGCCATTCTGTTACAATATCCCATCCCAGGTTGTTCACCTCAGGGTTGCACCTTATGGGATGCAGCCATGGAGCGTAACCTACCAGCAATCTCCGTAAAGGTTGGCCGTTCGGATGGTTCTGTCGACCAACATTGCTCCATTAGTGATCTCCACTCTGGATCACAAGAGTCAGGTACTGCTGGTCGTAGAGTGTTGCTCACAATGCCACCTATAATAACACCATAATGCAGATCTGCGTATGGTTCTTCTCCTGTTAAGAGTTCCCAGAGAACAATCCCAAAGGAGAACACATCAACCTTTTCGGAGACCAAGCTG ]
[+] EMBL CB650368 [ AAGCTTAATTACCCTTCCCCCTTAAAGTACATTCCGACCGACCGACCGATTGACTCCCAAATAACTCAATTATTACCCAGGAAAAGGGGGAGAAAAAGAAAAAAGGAAAACATATTGGGCTCCCTATAACTGACTCTAGACTAATAACTTATTAAACGCACCTCTAAGCAAAAGGTATAAATGAAAGAATATGGATCTGAGACCGTCCAT TGCGATGCTTCTGGACACACGGCTGG TAACTTTTTTTGATTACAAGATATGAAACAATGAAGAGGTATGAACAGATAGATCCTAGGGACATAAATGAAGGCATATTTATATCAGTGCTGAATTCCTAAATACGCGATCTGGCAGTAGAGAACTTGTCCACCGATGCCCCAGAAGTTTGTTGCCGGCCATTCTGTTACAATATCCCATCCCAGGTTGTTCACCTCAGGGTTGCACCTTATGGGATGCAGCCATGGAGCGTAACCTACCAGCAATCTCCGTAAAGGTTGGCCGTTCGGATGGTTCTGTCGACCAACATTGCTCCATTAGTGATCTCCACTCTGGATCACAAGAGTCAGGTACTGCTGGTCGTAGAGTGTTGCTCACAATGCCACCTATAATAACACCATAATGCAGATCTGCGTATGGTTCTTCTCCTGTTAAGAGTTCCCAGAGAACAATCCCAAAGGAGAACACATCAACCTTTTCGGAGACCAAGCTGCT ]
[+] EMBL CB650279 [ AGCTTAATTACCCTTCACCCTTAAAGTACATTCCGACCGACCGACCGATTGACTCCCAAATAACTCAATTATTACCCAGGAAAAGGGGGAGAAAAAGAAAAAAGGAAAACATATTGGGCTCCCTATAACTGACTCTAGACTAATAACTTATTAAACGCACCTCTAAGCAAAAGGTATAAATGAAAGAATATGGATCTGAGACCGTCCAT TGCGATGCTTCTGGACACACGGCTGG TAACTTTTTTTGATTACAAGATATGAAACAATGAAGAGGTATGAACAGATAGATCCTAGGGACATAAATGAAGGCATATTTATATCAGTGCTGAATTCCTAAATACGCGATCTGGCAGTAGAGAACTTGTCCACCGATGCCCCAGAAGTTTGTTGCCGGCCATTCTGTTACAATATCCCATCCCAGGTTGTTCACCTCAGGGTTGCACCTTATGGGATGCAGCCATGGAGCGTAACCTACCAGCAATCTCCGTAAAGGTTGGCCGTTCGGATGGTTCTGTCGACCAACATTGCTCCATTAGTGATCTCCACTCTGGATCACAAGAGTCAGGTACTGCTGGTCGTAGAGTGTTGCTCACAATGCCACCTATAATAACACCATAATGCAGATCTGCGTATGGTTCTTCTCCTGTTAAGAGTTCCCAGAGAACAATCCCAAAGGAGAACACATCAACCTTTTCGGAGACCAAGCTGC ]
[-] EMBL CA999444 [ TTCTGTCGACCAACATTGCTCCATTAGTGATCTCCACTCTGGATCACAAGAGTCAGGTACTGCTGGTCGTAGAGTGTTGCTCACAATGCCACCTATAATAACACCATAATGCAGATCTGCGTATGGTTCTTCTCCTGTTAAGAGTTCCCAGAGATCAATCCCAAAGGAGAACACATCAACCTTTTCGGAGACCAAGCTGCTACT ]
consensusID : consensus_12502#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 356 fasta sequence
[CCGCTCAACAATTAGTATTATAAATTATCTTCAGCAAAACTGCAACAACATCATACATGATGACTTGTGACTGTTACAAGAGTACTTAACAAATCGGTATATCTCACAAACCACAAAAAAGAAAAACAGACATCTTATTACAAGCAAGGACCTCACTCTGTGTTCCAAGACTTGCAAAGACCAACCAAGCTTAATTACCCTTCAACATCAGTTTACATTCCGACCGACCGACCGATTGANTCCCAAATAACTCAATTATTACCCAGGAAAAGGGGGAGAAAAAGAAAAAAGGAAAACATATTGGGCTCCCTATAACTGACTCTAGAAGCGGCCGCGAATTCGCGGCCGCTAGCGGC]
[-] EMBL AU225125 [CCGCTCAACAATTAGTATTATAAATTATCTTCAGCAAAACTGCAACAACATCATACATGATGACTTGTGACTGTTACAAGAGTACTTAACAAATCGGTATATCTCACAAACCACAAAAAAGAAAAACAGACATCTTATTACAAGCAAGGACCTCACTCTGTGTTCCAAGACTTGCAAAGACCAACCAAGCTTAATTACCCTTCAACATCAGTTTACATTCCGACCGACCGACCGATTGANTCCCAAATAACTCAATTATTACCCAGGAAAAGGGGGAGAAAAAGAAAAAAGGAAAACATATTGGGCTCCCTATAACTGACTCTAGAAGCGGCCGCGAATTCGCGGCCGCTAGCGGC]
consensusID : consensus_12502#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 295 fasta sequence
[TTTTTTTTTTGGACTCCCAAATAANTCAATTATTACCCAGGAAAAGGGGGAGAAAAAGAAAAANGGAAACACATATGGGCTCCCTATAACTGACTCTAGACTAATAACTTATTAAACGCACCTCTAAGCAAAAGGTATAACATGAACAGAATATGGATCTGAGACCGTCCAGTGGCGATGCTTCTAGACACACGGCTGGTCAAATTTTTTCTGATTACAAGATCATGAAACAATGCACAGAGGTCATGCACACAGNATCAGCATCCTAGGGCACATACAATGACAGGCCATCATT]
[-] EMBL BM420566 [TTTTTTTTTTGGACTCCCAAATAANTCAATTATTACCCAGGAAAAGGGGGAGAAAAAGAAAAANGGAAACACATATGGGCTCCCTATAACTGACTCTAGACTAATAACTTATTAAACGCACCTCTAAGCAAAAGGTATAACATGAACAGAATATGGATCTGAGACCGTCCAGTGGCGATGCTTCTAGACACACGGCTGGTCAAATTTTTTCTGATTACAAGATCATGAAACAATGCACAGAGGTCATGCACACAGNATCAGCATCCTAGGGCACATACAATGACAGGCCATCATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12502#0 GCCGCTCTTTAGAGCAATAAATCTCTGCAACAAT-AGTCTTATAA-CTATCTTCAGCAAA 58
consensus_12502#1 ----------------------CCGCTCAACAATTAGTATTATAAATTATCTTCAGCAAA 38
consensus_12502#2 -----------------------------------------------TTTTTTTTTTGGA 13
* * ** *
consensus_12502#0 ACTGCAACA-CATCATACATGATGACTTGTGACTGTTACAAGAGTACTTAACAAATCGGT 117
consensus_12502#1 ACTGCAACAACATCATACATGATGACTTGTGACTGTTACAAGAGTACTTAACAAATCGGT 98
consensus_12502#2 CTCCCAAATAANTCA---ATTATTACCCAGGAAAAGGGGGAGAAAAAGAAAAANGGAAAC 70
*** *** ** ** ** ** *** * ** *
consensus_12502#0 ATATCTCA-CAAACCACAAAAAAGAA-AAACAGACATCTTATTACAAGCAAGGACCTCAC 175
consensus_12502#1 ATATCTCA-CAAACCACAAAAAAGAA-AAACAGACATCTTATTACAAGCAAGGACCTCAC 156
consensus_12502#2 ACATATGGGCTCCCTATAACTGACTCTAGACTAATAACTTATTAAACGCA----CCTCTA 126
* ** * * * * ** * * ** * * ******* * *** ****
consensus_12502#0 TCTGTGTTCCAAGACTTGCAAAGACCAACCAAGCTTAATTACCCTTCAACATCAGTTTAC 235
consensus_12502#1 TCTGTGTTCCAAGACTTGCAAAGACCAACCAAGCTTAATTACCCTTCAACATCAGTTTAC 216
consensus_12502#2 AGCAAAAGGTATAACATGAACAGAATA-TGGATCTGAG--ACCGTCCAGTGGCGATGC-- 181
* ** ** * *** * * ** * *** * ** * *
consensus_12502#0 ATTCCGACCGACCGACCGATTGACTCCCAAATAACTCAATTATTACCCAGGAAAAGGGGG 295
consensus_12502#1 ATTCCGACCGACCGACCGATTGANTCCCAAATAACTCAATTATTACCCAGGAAAAGGGGG 276
consensus_12502#2 -TTCTAGACACACGGCTGGTCAAATTTTTTCTGATTACAAGATCATGAAACAATGCACAG 240
*** * ** * * * * * * * * * ** * * ** *
consensus_12502#0 AGAAAAAGAAAAAAGGAA-AACATATTGGGCTCCCTATAACTGACTCTAGACTAATAACT 354
consensus_12502#1 AGAAAAAGAAAAAAGGAA-AACATATTGGGCTCCCTATAACTGACTCTAGA--AGCGGCC 333
consensus_12502#2 AGGTCATGCACACAGNATCAGCATCCTAGGGCACATACAA-TGAC---AGGCCATCATT- 295
** * * * * ** * * *** * ** * ** ** **** ** *
consensus_12502#0 TATTAAACGCACCTCTAAGCAAAAGGTATAAATGAAAGAATATGGATCTGAGACCGTCCA 414
consensus_12502#1 GCGAATTCGCGGCCGCTAGCGGC------------------------------------- 356
consensus_12502#2 ------------------------------------------------------------
consensus_12502#0 TTGCGATGCTTCTGGACACACGGCTGGTAACTTTTTTTGATTACAAGATATGAAACAATG 474
consensus_12502#1 ------------------------------------------------------------
consensus_12502#2 ------------------------------------------------------------
consensus_12502#0 AAGAGGTATGAACAGATAGATCCTAGGGACATAAATGAAGGCATATTTATATCAGTGCTG 534
consensus_12502#1 ------------------------------------------------------------
consensus_12502#2 ------------------------------------------------------------
consensus_12502#0 AATTCCTAAATACGCGATCTGGCAGTAGAGAACTTGTCCACCGATGCCCCAGAAGTTTGT 594
consensus_12502#1 ------------------------------------------------------------
consensus_12502#2 ------------------------------------------------------------
consensus_12502#0 TGCCGGCCATTCTGTTACAATATCCCATCCCAGGTTGTTCACCTCAGGGTTGCACCTTAT 654
consensus_12502#1 ------------------------------------------------------------
consensus_12502#2 ------------------------------------------------------------
consensus_12502#0 GGGATGCAGCCATGGAGCGTAACCTACCAGCAATCTCCGTAAAGGTTGGCCGTTCGGATG 714
consensus_12502#1 ------------------------------------------------------------
consensus_12502#2 ------------------------------------------------------------
consensus_12502#0 GTTCTGTCGACCAACATTGCTCCATTAGTGATCTCCACTCTGGATCACAAGAGTCAGGTA 774
consensus_12502#1 ------------------------------------------------------------
consensus_12502#2 ------------------------------------------------------------
consensus_12502#0 CTGCTGGTCGTAGAGTGTTGCTCACAATGCCACCTATAATAACACCATAATGCAGATCTG 834
consensus_12502#1 ------------------------------------------------------------
consensus_12502#2 ------------------------------------------------------------
consensus_12502#0 CGTATGGTTCTTCTCCTGTTAAGAGTTCCCAGAGAACAATCCCAAAGGAGAACACATCAA 894
consensus_12502#1 ------------------------------------------------------------
consensus_12502#2 ------------------------------------------------------------
consensus_12502#0 CCTTTTCGGAGACCAAGCTGCTACTTCCATTCAGAAGTTCTGGAGCCATCCATGGAAGAG 954
consensus_12502#1 ------------------------------------------------------------
consensus_12502#2 ------------------------------------------------------------
consensus_12502#0 TCCCCCTCACACCACCAGAGATGAGGGTCTGACA 988
consensus_12502#1 ----------------------------------
consensus_12502#2 ----------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||