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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12509#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1280 fasta sequence
[TGGGCCCATCATCCACTCCGGCCCACGACGACCAACACCAAACAAACCCTAGCTCACCGGCGTCGGCGGCGGCGGAAGGCGGTCGCCGGCACGCCACAGCAAAGGCAAACCCGCAGCAGCACGAACAAACAGGCGAGCGATGGGAGGAGGCGAGGCCACCAGCGGAGGAGGAGGAGGGTTCCGCGCGCGGGTGGAGCACTACCTGTACAGCGGCGAGAAGAAGCACGTCGTCGCCGGCATCGCCATCTTCGCCGCCATCTTCGGCGTCCCCTGGTACCTCATGACCCGAGGGGCAAAGCATCAGTCGCACCAAGATTACATGGAAAGAGCTAACAAGGCGAGGTCGGAGAGGCTTTCTTCTGGACAGGCATCTTCGCCAAAAGAGTGAAACAGGAAGGCATACAACTTCCGTTGCAGTGAGCTGGTTGATTCAAGCTCAATCTGGATGCATGGTGCTTTGTCTACAACCCAATGTAGGCCGTGTGGCATGCCTGTTTATTCAGTGTCTAAAATTGCAAAGTTTTCTTCCCGTCGCCCAAAAGATTTAATTTTTTTCTACTTGCCCCTATCTCTGAACTGTGCTGTTTATAGTTTTTGCAGATGACTGAATACTAACCATTACCAATTTAATTAGCGTTGCTATGGATAGGACAACTGCCTCCAACTCCATGGAGTTGTGTTGATATGCAATCTTCCCCATCAATTGAAATGTGGTGGATTTAAACAAAAAAGAAAGAAAGAAACAAATGCACATCCATCTGAAAAACCCAGAAGGAAAATATTGTCATCTACAGAATTGCAGTCTGAAGATTTGCTGTTCTTTCTCTGCTGGAAAAGAAGCAGTGACAACAAGAAGCTGACACAAGCGTGCCTATGGTTAGGGAGATCCAAATTAGAGAAGAATGATTCTGAACTCTTCCCATGTCGGCATTAAACTACAATTCGACGGGGTTGATTAATCATCACTACAGAATCAAGTCGTGGCTTACTGGCATATCAAGAGGGGAAAAGGTGAATGGTTTGATACTTCGATGAAAACCACGCGGATTCCCCAGAAATAGTCCTCGTTACTCGTCAGGTGCACACGCTTACAGCACCAGTACTTCTGACATTGTGATTAGTTTCCATAGTCCCATGTCCTTGTTTTGATTTCTTTTTAAGGTAATGTGTTCTTGTTTTTCTATGGCAAACATGATAGGGGCATTCAAAACACCCTATGGTTTTCGAGCTTTCGACTTTTGATGCAACATAAGTAGGGTGTAGCTAAAATTAGTAAAGAC]
[+] EMBL AK108690 [TGGGCCCATCATCCACTCCGGCCCACGACGACCAACACCAAACAAACCCTAGCTCACCGGCGTCGGCGGCGGCGGAAGGCGGTCGCCGGCACGCCACAGCAAAGGCAAACCCGCAGCAGCACGAACAAACAGGCGAGCGATGGGAGGAGGCGAGGCCACCAGCGGAGGAGGAGGAGGGTTCCGCGCGCGGGTGGAGCACTACCTGTACAGCGGCGAGAAGAAGCACGTCGTCGCCGGCATCGCCATCTTCGCCGCCATCTTCGGCGTCCCCTGGTACCTCATGACCCGAGGGGCAAAGCATCAGTCGCACCAAGATTACATGGAAAGAGCTAACAAGGCGAGGTCGGAGAGGCTTTCTTCTGGACAGGCATCTTCGCCAAAAGAGTGAAACAGGAAGGCATACAACTTCCGTTGCAGTGAGCTGGTTGATTCAAGCTCAATCTGGATGCATGGTGCTTTGTCTACAACCCAATGTAGGCCGTGTGGCATGCCTGTTTATTCAGTGTCTAAAATTGCAAAGTTTTCTTCCCGTCGCCCAAAAGATTTAATTTTTTTCTACTTGCCCCTATCTCTGAACTGTGCTGTTTATAGTTTTTGCAGATGACTGAATACTAACCATTACCAATTTAATTAGCGTTGCTATGGATAGGACAACTGCCTCCAACTCCATGGAGTTGTGTTGATATGCAATCTTCCCCATCAATTGAAATGTGGTGGATTTAAACAAAAAAGAAAGAAAGAAACAAATGCACATCCATCTGAAAAACCCAGAAGGAAAATATTGTCATCTACAGAATTGCAGTCTGAAGATTTGCTGTTCTTTCTCTGCTGGAAAAGAAGCAGTGACAACAAGAAGCTGACACAAGCGTGCCTATGGTTAGGGAGATCCAAATTAGAGAAGAATGATTCTGAACTCTTCCCATGTCGGCATTAAACTACAATTCGACGGGGTTGATTAATCATCACTACAGAATCAAGTCGTGGCTTACTGGCATATCAAGAGGGGAAAAGGTGAATGGTTTGATACTTCGATGAAAACCACGCGGATTCCCCAGAAATAGTCCTCGTTACTCGTCAGGTGCACACGCTTACAGCACCAGTACTTCTGACATTGTGATTAGTTTCCATAGTCCCATGTCCTTGTTTTGATTTCTTTTTAAGGTAATGTGTTCTTGTTTTTCTATGGCAAACATGATAGGGGCATTCAAAACACCCTATGGTTTTCGAGCTTTCGACTTTTGATGCAACATAAGTAGGGTGTAGCTAAAATTAGTAAAGAC]
consensusID : consensus_12509#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 997 fasta sequence
[ACGAGGGAACACACAGGGTAGCGCTCGCGTAGTCGCGTACTCCCCGGCCTGCTCCTCACACAGACGCGATGGCCCAGGGAAGAGGCAGTGCATTTCAGGGGCTCGCCCTCGGCTTGCTCCTCGTGTGCCTCCTCGNCGGCTCCGACGTCGTGCCGCCGCCACCTACAACGNCGACTGGNCGATCGGCGCGGACAGCTGGNCCAAGGGCAAGAACTTCCGCGCCGGTGACGTCCTTGTGTTCAGCTACGACCCGTCCGTGCACAACGTGGTGGCGGTGGACGCCGGCGGCTACAGCGGCTGCCGGGAGTCCGGCACCAAGTACAGCTCCGGGAACGACCGCATCACGCTCGGCCGCGGCACGAGCTACTTCATCTGCAGCTTATCCGGCCACTGTGGCGCAGGGATGAAGATGGCCGTCACCGTCAGCTGAAGAGGAAGCCAACGCAGCACAAAAGCAGGGCCAGGCTGCTGCCGCTCTAGCCTGTAGCTATACATATTGGACATGTGTGGGCCGAACAGTAATAATAAGAGGCAGGAGCCAGCACCGCGTGATCGGGCAAGTTTTGATGACATAGTGCTTGGGAAACAATGTATACAGGGCTGTGTGTGGGGAGATATACGGAGAGCGGCACGCGACGCCTCGAGCGCCGGGCCCGAGGCGGTGGTCGGACGCAGACGCTGTACCGAACGAGTGCCGCTATGCAAGATCGCGCTCAAACAGCATACAGCACCCAAGCAAGCAGATATGATGACTGTCACAGCCTCCATCGCCCGCCCCTGGGCATGCCGCTGCACAGCCGGACCGTCCCGCGCATGCACCATCACTCGTGCCCCTATCCCCGCCCATTCATCGTTCCACACGCGATGGGTGGGCCCGTCATGCGCGCTTCCCCCCGCCAGCGCACCACACACACTACGCCTCCCATAGTATACGTGTGAGCGGCGACCATAGAAAGAGACAAGAGTAAGAATACTCGATTCGGACTCTCGCGCCCTC]
[+] EMBL BE040721 [ACGAGGGAACACACAGGGTAGCGCTCGCGTAGTCGCGTACTCCCCGGCCTGCTCCTCACACAGACGCGATGGCCCAGGGAAGAGGCAGTGCATTTCAGGGGCTCGCCCTCGGCTTGCTCCTCGTGTGCCTCCTCGNCGGCTCCGACGTCGTGCCGCCGCCACCTACAACGNCGACTGGNCGATCGGCGCGGACAGCTGGNCCAAGGGCAAGAACTTCCGCGCCGGTGACGTCCTTGTGTTCAGCTACGACCCGTCCGTGCACAACGTGGTGGCGGTGGACGCCGGCGGCTACAGCGGCTGCCGGGAGTCCGGCACCAAGTACAGCTCCGGGAACGACCGCATCACGCTCGGCCGCGGCACGAGCTACTTCATCTGCAGCTTATCCGGCCACTGTGGCGCAGGGATGAAGATGGCCGTCACCGTCAGCTGAAGAGGAAGCCAACGCAGCACAAAAGCAGGGCCAGGCTGCTGCCGCTCTAGCCTGTAGCTATACATATTGGACATGTGTGGGCCGAACAGTAATAATAAGAGGCAGGAGCCAGCACCGCGTGATCGGGCAAGTTTTGATGACATAGTGCTTGGGAAACAATGTATACAGGGCTGTGTGTGGGGAGATATACGGAGAGCGGCACGCGACGCCTCGAGCGCCGGGCCCGAGGCGGTGGTCGGACGCAGACGCTGTACCGAACGAGTGCCGCTATGCAAGATCGCGCTCAAACAGCATACAGCACCCAAGCAAGCAGATATGATGACTGTCACAGCCTCCATCGCCCGCCCCTGGGCATGCCGCTGCACAGCCGGACCGTCCCGCGCATGCACCATCACTCGTGCCCCTATCCCCGCCCATTCATCGTTCCACACGCGATGGGTGGGCCCGTCATGCGCGCTTCCCCCCGCCAGCGCACCACACACACTACGCCTCCCATAGTATACGTGTGAGCGGCGACCATAGAAAGAGACAAGAGTAAGAATACTCGATTCGGACTCTCGCGCCCTC]
consensusID : consensus_12509#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 945 fasta sequence
[TTATCTGTGGCCTTGTGATTGGATCCAGGTTGCCGGGCTCGCCTTTTCCGCCCCTATAAAACGCTCCTCGCGTTCCCCCTGTCTCCCCACAGCGATCTCTCCGAACGAACACACAGGGTAGCGCTCGCGTAGTCGCGTACTCCCCGGCCTGCTCCTCACACAGACGCGATGGCCCAGGGAAGAGGCAGTGCAGCGCAGGGGCTCGCCCTCGGCTTGCTCCTCGTGTGCCTCCTCGTCGGCTCCGACGTCGCCGCCGCCGCCACCTACAACGTCGACTGGTCGTTCGGCGCGGACAGCTGGTCCAAGGGCAAGAACTTCCGCGCCGGTGACGTCCTTGTGTTCAGCTACGACCCGTCCGTGCACAACGTGGTGGCGGTGGACGCCGGCGGCTACAGCGGCTGCCGGGAGTCCGGCACCAAGTACAGCTCCGGGAACGACCGCATCACGCTCGGCCGGGGCACGAGCTACTTCATCTGCAGCTTCCTTCGGCCACTGTGGCGCAAGGATTGAAGATGGCCCTCACCCGCCGCTGAAAAGGAAGCCCACGCAGCAAAAAGCAAGGCCAGGCTGTTGCCGTTCAGCCTGGAGCTATCCTATTACATGTGTCCCCGACCGCATAATAGAGGCAGACCCGCACCGGTTATCCGCCAGGTTGGTTGGCTAATGCGTGGGAGACATATTACAGGCTTATTGTTGTTTTCAGGAGAGTCGTCCGGGGGATTATACGCCTCCCTCTTGATCTTGCCACTGGCAGTCGCTTCTCGAAACCTAAGGTTGGCGGGTGACAAAAAGCTAGAAGGCGGGGAGGCAGCTGGTGTTGAGCGATTTTGTCGCCGGGGGTCCCGGCCTTAGACGTTTGATTGCCTGCCCTCCCGCCTTGGTTGTTTGGTGCGCAGCGCTAGTCGGGAAACAGTCTGGAACCTGTGCGAGTGTGACCCCGCGCGC]
[+] EMBL BE040691 [TTATCTGTGGCCTTGTGATTGGATCCAGGTTGCCGGGCTCGCCTTTTCCGCCCCTATAAAACGCTCCTCGCGTTCCCCCTGTCTCCCCACAGCGATCTCTCCGAACGAACACACAGGGTAGCGCTCGCGTAGTCGCGTACTCCCCGGCCTGCTCCTCACACAGACGCGATGGCCCAGGGAAGAGGCAGTGCAGCGCAGGGGCTCGCCCTCGGCTTGCTCCTCGTGTGCCTCCTCGTCGGCTCCGACGTCGCCGCCGCCGCCACCTACAACGTCGACTGGTCGTTCGGCGCGGACAGCTGGTCCAAGGGCAAGAACTTCCGCGCCGGTGACGTCCTTGTGTTCAGCTACGACCCGTCCGTGCACAACGTGGTGGCGGTGGACGCCGGCGGCTACAGCGGCTGCCGGGAGTCCGGCACCAAGTACAGCTCCGGGAACGACCGCATCACGCTCGGCCGGGGCACGAGCTACTTCATCTGCAGCTTCCTTCGGCCACTGTGGCGCAAGGATTGAAGATGGCCCTCACCCGCCGCTGAAAAGGAAGCCCACGCAGCAAAAAGCAAGGCCAGGCTGTTGCCGTTCAGCCTGGAGCTATCCTATTACATGTGTCCCCGACCGCATAATAGAGGCAGACCCGCACCGGTTATCCGCCAGGTTGGTTGGCTAATGCGTGGGAGACATATTACAGGCTTATTGTTGTTTTCAGGAGAGTCGTCCGGGGGATTATACGCCTCCCTCTTGATCTTGCCACTGGCAGTCGCTTCTCGAAACCTAAGGTTGGCGGGTGACAAAAAGCTAGAAGGCGGGGAGGCAGCTGGTGTTGAGCGATTTTGTCGCCGGGGGTCCCGGCCTTAGACGTTTGATTGCCTGCCCTCCCGCCTTGGTTGTTTGGTGCGCAGCGCTAGTCGGGAAACAGTCTGGAACCTGTGCGAGTGTGACCCCGCGCGC]
consensusID : consensus_12509#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 714 fasta sequence
[TCTCCGAACGAACACACAGGGTAGCGCTCGCGTAGTCGCGTACTCCCCGGCCTGCTCCTCACACAGACGCGATGGCCCAGGGAAGAGGCAGTGCAGCGCAGGGGCTCGCCCTCGGCTTGCTCCTCGTGTGCCTCCTCGTCGGCTCCGACGTCGCCGCCGCCGCCACCTACAACGTCGACTGGTCGTTCGGCGCGGACAGCTGGTCCAAGGGCAAGAACTTCCGCGCCGGTGACGTCCTTGTGTTCAGCTACGACCCGTCCGTGCACAACGTGGTGGCGGTGGACGCCGGCGGCTACAGCGGCTGCCGGGAGTCCGGCACCAAGTACAGCTCCGGGTACGACCGCATCACGCTCGGCCGCGGCACGAGCTACTTCATCTGCAGCTTCTCCGGCCACTGTGGCGCAGGGATGAAGATGGCCGTCACCGCCAGCTGAAGAGGAAGCCAACGCAGCACAAAAGCAGGGCCAGGCTGCTGCCGCTCTAGCCTGTAGCTATACATATTTACATGTGTCGCCCGAACAGCAATAATAAGAGGCAGCAGCCAGCACCGCGTCATTGTGCAGGTTTTGTTGTCATAGTGCGTCGCAAACAATATATACAGCCATATATGTGTGTTATGTAGGGAGAGTGGTAGGTGAGGCATGAGTGATGTGTGCTTGTATGTATTATCAGAAGTCAGGAGTTGATTACTAGTAAAGCACATCAGCTTGTTTG]
[+] EMBL AK107381 [TCTCCGAACGAACACACAGGGTAGCGCTCGCGTAGTCGCGTACTCCCCGGCCTGCTCCTCACACAGACGCGATGGCCCAGGGAAGAGGCAGTGCAGCGCAGGGGCTCGCCCTCGGCTTGCTCCTCGTGTGCCTCCTCGTCGGCTCCGACGTCGCCGCCGCCGCCACCTACAACGTCGACTGGTCGTTCGGCGCGGACAGCTGGTCCAAGGGCAAGAACTTCCGCGCCGGTGACGTCCTTGTGTTCAGCTACGACCCGTCCGTGCACAACGTGGTGGCGGTGGACGCCGGCGGCTACAGCGGCTGCCGGGAGTCCGGCACCAAGTACAGCTCCGGGTACGACCGCATCACGCTCGGCCGCGGCACGAGCTACTTCATCTGCAGCTTCTCCGGCCACTGTGGCGCAGGGATGAAGATGGCCGTCACCGCCAGCTGAAGAGGAAGCCAACGCAGCACAAAAGCAGGGCCAGGCTGCTGCCGCTCTAGCCTGTAGCTATACATATTTACATGTGTCGCCCGAACAGCAATAATAAGAGGCAGCAGCCAGCACCGCGTCATTGTGCAGGTTTTGTTGTCATAGTGCGTCGCAAACAATATATACAGCCATATATGTGTGTTATGTAGGGAGAGTGGTAGGTGAGGCATGAGTGATGTGTGCTTGTATGTATTATCAGAAGTCAGGAGTTGATTACTAGTAAAGCACATCAGCTTGTTTG]
consensusID : consensus_12509#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 660 fasta sequence
[CCAAGGGGGGCCAACACCAAACAAACCCTAGCTCACCGGCGTCGGCGGCGGCGGAAGGCGGTCGCCGGCACGCCACAGCAAAGGCAAACCCGCAGCAGCACGAACAAACAGGCGAGCGATGGGAGGAGGCGAGGCCACCAGCGGAGGAGGAGGAGGGTTCCGCGCGCGG-GTGGAGCACTAC-CTGTACAGCGGCGAGAAGAAGCACGTCGTCGCCGGCATCGCCATCTTCGCCGCCATCTTCGGCGTCCCCTGGTACCTCATGACCCGAGGGGCAAAGCATCAGTCGCACCAAGATTACATGGAAAGAGCTAACAAGGCGAGGTCGGAGAGGCTTTCTTCTGGACAGGCATCTTCGCCAAAAGAGTGAAACAGTAATCCCCTAACTCAGATTTGCAAAACCTCAGGCCGACACAGCTATGATAATCTGAGAATTCGATCCTGTTGTGAAATAAGCAGACCATCTCGATTCTCATCTTTCAGTTGTAGGAAACATGGGTTGAATGTAATACGTCACATGAAATTTTGTCAAATGCAGCTAGCTCTCTTTACATT-CCGCACTATTCTACAAGGAGATGATTGACAAAGACAAACACCTGATTTATTTGTCTCAAATGACGATTCTAGAGCCAATTACCTTGGCTTGAGATAAAAAAAAAAAAA]
[-] EMBL CA763636 [CCAAGGGGGGCCAACACCAAACAAACCTTAGCTAACCGGGGTCGCCGCCGCCGGAAGCCGTTCGCAGGCCCGCCCCAGATAAGGCAAACCCGCAGCACCTGTACCAAACAGGCTACCGATGGGAGAAGGCGAGACCACCAGCGGAGGAGGAGGAGGGTTCCGCGC CGGTGTGGAGCACTACTCTGTACAGCGGCGAGAAGAAGCATGTTGTTGCCGGCATCGCCATCTTCGCCGCCATCTTGGGCGTCCCCTGGTGCCTCATGACCCGAGGGGCAAAGCATCAGTCGCACCAAGATTACATGGAAAGAGCTAACAAGGCGAGGTCGGAGAGGCTTTATTTTGGACAGGCATGTTCGCCAAAAGAATGAAACAGTAATCCCCTAACTCAGATTTGCAAAACCTCAGGCCGACACAGCTATGATAATCTGAGAATTCGATCCTGTTGTGAAATAAGCAGACCATCTCGATTCTCATCTTTCAGTTGTAGGAAACATGGGTTGAATGTAATACGTCACATGAAATTTTGTCAAGTACAGCTAGCTCTCTTTACATTCCCGCACTATTTTACAAGGAGATGATTGCCAAAGCCAAACGCCTGATTTATTTGTTTCAAATGACGATTTTAGAGCCAATTACCTTGGCTTGAGATAAAAAAAAAAAAA]
[+] EMBL CF300844 [ gacgaCCAACACCAAACAAACCCTAGCTCACCGGCGTCGGCGGCGGCGGAAGGCGGTCGCCGGCACGCCACAGCAAAGGCAAACCCGCAGCAGCACGAACAAACAGGCGAGCGATGGGAGGAGGCGAGGCCACCAGCGGAGGAGGAGGAGGGTTCCGCGCGCGG GTGGAGCACTAC CTGTACAGCGGCGAGAAGAAGCACGTCGTCGCCGGCATCGCCATCTTCGCCGCCATCTTCGGCGTCCCCTGGTACCTCATGACCCGAGGGGCAAAGCATCAGTCGCACCAAGATTACATGGAAAGAGCTAACAAGGCGAGGTCGGAGAGGCTTTCTTCTGGACAGGCATCTTCGCCAAAAGAGTGAAACAGTAATCCCCTAACTCAGATTTGCAAAACCTCAGGCCGACACAGCTATGATAATCTGAGAATTC ]
[+] EMBL AK062903 [ CACCAAACAAACCCTAGCTCACCGGCGTCGGCGGCGGCGGAAGGCGGTCGCCGGCACGCCACAGCAAAGGCAAACCCGCAGCAGCACGAACAAACAGGCGAGCGATGGGAGGAGGCGAGGCCACCAGCGGAGGAGGAGGAGGGTTCCGCGCGCGG GTGGAGCACTAC CTGTACAGCGGCGAGAAGAAGCACGTCGTCGCCGGCATCGCCATCTTCGCCGCCATCTTCGGCGTCCCCTGGTACCTCATGACCCGAGGGGCAAAGCATCAGTCGCACCAAGATTACATGGAAAGAGCTAACAAGGCGAGGTCGGAGAGGCTTTCTTCTGGACAGGCATCTTCGCCAAAAGAGTGAAACAGTAATCCCCTAACTCAGATTTGCAAAACCTCAGGCCGACACAGCTATGATAATCTGAGAATTCGATCCTGTTGTGAAATAAGCAGACCATCTCGATTCTCATCTTTCAGTTGTAGGAAACATGGGTTGAATGTAATACGTCACATGAAATTTTGTCAAATGCAGCTAGCTCTCTTTACATT CCGCACTATTCTACAAGGAGATGATTGACAAAGACAAACACCTGATTTATTTGTCTCAAATGACGATTCTAGAGCCAATTACC ]
[-] EMBL CF300843 [ ATCTTCGCCGCCATCTTCGGCGTCCCCTGGTACCTCATGACCCGAGGGGCAAAGCATCAGTCGCACCAAGATTACATGGAAAGAGCTAACAAGGCGAGGTCGGAGAGGCTTTCTTCTGGACAGGCATCTTCGCCAAAAGAGTGAAACAGTAATCCCCTAACTCAGATTTGCAAAACCTCAGGCCGACACAGCTATGATAATCTGAGAATTCGATCCTGTTGTGAAATAAGCAGACCATCTCGATTCTCATCTTTCAGTTGTAGGAAACATGGGTTGAATGTAATACGTCACATGAAATTTTGTCAAATGCAGCTAGCTCTCTTTACATT CCGCACTATTCTACAAGGAGATGATTGACAAAGACAAACACCTGATTTATTTGTCTCAAATGACGATTCTAGAGCCAAaaaaaa ]
consensusID : consensus_12509#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 590 fasta sequence
[TTCGGGCGACACATGTAAATATGTATAGCTACAGGCTAGAGCGGCAGCAGCCTGGCCCTGCTTTTGTGCTGCGTTGGCTTCCTCTTCAGCTGGCGGTGACGGCGGCGGCGGCGGAAGGCGGTCGCCGGCACGCCACAGCAAAGGCAAACCCGCAGCAGCACGAACAAACAGGCGAGCGATGGGAGGAGGCGAGGCCACCAGCGGAGGAGGAGGAGGGTTCCGCGCGCGGGTGGAGCACTACCTGTACAGCGGCGAGAAGAAGCACGTCGTCGCCGGCATCGCCATCTTCGCCGCCATCTTCGGCGTCCCCTGGTACCTCATGACCCGAGGGGCAAAGCATCAGTCGCACCAAGATTACATGGAAAGAGCTAACAAGGCGAGGTCGGAGAGGCTTTCTTCTGGACAGGCATCTTCGCCAAAAGAGTGAAACAGTAATCCCCTAACTCAGATTTGCAAAACCTCAGGCCGACACAGCTATGATAATCTGAGAATTCGATCCTGTTGTGAAATAAGCAGACCATCTCGATTCTCATCTTTCAGTTGTAGGAAACATGGGTTGAATGTAATACGTCACATGAAATTTTGTCAAA]
[-] EMBL CA998397 [TTCGGGCGACACATGTAAATATGTATAGCTACAGGCTAGAGCGGCAGCAGCCTGGCCCTGCTTTTGTGCTGCGTTGGCTTCCTCTTCAGCTGGCGGTGACGGCGGCGGCGGCGGAAGGCGGTCGCCGGCACGCCACAGCAAAGGCAAACCCGCAGCAGCACGAACAAACAGGCGAGCGATGGGAGGAGGCGAGGCCACCAGCGGAGGAGGAGGAGGGTTCCGCGCGCGGGTGGAGCACTACCTGTACAGCGGCGAGAAGAAGCACGTCGTCGCCGGCATCGCCATCTTCGCCGCCATCTTCGGCGTCCCCTGGTACCTCATGACCCGAGGGGCAAAGCATCAGTCGCACCAAGATTACATGGAAAGAGCTAACAAGGCGAGGTCGGAGAGGCTTTCTTCTGGACAGGCATCTTCGCCAAAAGAGTGAAACAGTAATCCCCTAACTCAGATTTGCAAAACCTCAGGCCGACACAGCTATGATAATCTGAGAATTCGATCCTGTTGTGAAATAAGCAGACCATCTCGATTCTCATCTTTCAGTTGTAGGAAACATGGGTTGAATGTAATACGTCACATGAAATTTTGTCAAA]
consensusID : consensus_12509#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 502 fasta sequence
[ACCACCGGTGTTAGCGGCGGCGGATTCCGCAGGCGGTTGGAGTACTACCTGTACAGCGGCGAGAAGAAGCACGTCGTCGCCGGCATCGCCATCTTCGCCGCCATCTTCGGCGTTCCCTGGTACTTCATGAGCCGAGGGACAAAGCATCAATCTCACCAAGATTACATGGAAAAAGCTAACAAGGCGAGGTCGGAGAGACTTTCTTCTGGACAGTCATCAGCACCAAAAGCATGAAGTAGTAATCCGTAACTCAGATCTGTGAAACCTCAGCATTCATAGTTTTGATCTATACTCTAGCTGAGCACTTTATCTATTGGGTGAAATAAGCAGGCCATCTCTTGAATATTGACCCTGATGACATGATCTTGTCAGTTTCAGAAACCATGTGTAAACTTCACATGAAATTTTGTCAAATGTAGCCTTTCTGTTCACTTTATGCGCAATTCTGTAGGAGATGATCAACAAGCACCAGATTTTTGTCTATCAAATATTCAAATGGTGG]
[+] EMBL AK111355 [ACCACCGGTGTTAGCGGCGGCGGATTCCGCAGGCGGTTGGAGTACTACCTGTACAGCGGCGAGAAGAAGCACGTCGTCGCCGGCATCGCCATCTTCGCCGCCATCTTCGGCGTTCCCTGGTACTTCATGAGCCGAGGGACAAAGCATCAATCTCACCAAGATTACATGGAAAAAGCTAACAAGGCGAGGTCGGAGAGACTTTCTTCTGGACAGTCATCAGCACCAAAAGCATGAAGTAGTAATCCGTAACTCAGATCTGTGAAACCTCAGCATTCATAGTTTTGATCTATACTCTAGCTGAGCACTTTATCTATTGGGTGAAATAAGCAGGCCATCTCTTGAATATTGACCCTGATGACATGATCTTGTCAGTTTCAGAAACCATGTGTAAACTTCACATGAAATTTTGTCAAATGTAGCCTTTCTGTTCACTTTATGCGCAATTCTGTAGGAGATGATCAACAAGCACCAGATTTTTGTCTATCAAATATTCAAATGGTGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12509#4 ------------------------------------------------------------
consensus_12509#6 ------------------------------------------------------------
consensus_12509#5 TTCGGGCGACACATGTAAATATGTATAGCTACAGGCTAGAGCGGCAGCAGCCTGGCCCTG 60
consensus_12509#0 ---------------------------------------TGGGCCCATCATCCACTCCGG 21
consensus_12509#1 ------------------------------------------------------------
consensus_12509#3 ------------------------------------------------------------
consensus_12509#2 ------------------------TTATCTGTGGCCTTGTGATTGGATCCAGGTTGCCGG 36
consensus_12509#4 CCAAGGGGGGCCAACACCAAACAAACCCTAGCTCACCGGCGTCGGCGGCGGCGGAAGGCG 60
consensus_12509#6 ------------------------------------------------------------
consensus_12509#5 CTTTTGTGCTGCGTTGGCTTCCTCTTCAGCTGGCGGTGACGGCGGCGGCGGCGGAAGGCG 120
consensus_12509#0 CCCACGACGACCAACACCAAACAAACCCTAGCTCACCGGCGTCGGCGGCGGCGGAAGGCG 81
consensus_12509#1 ------------------------------------------------------------
consensus_12509#3 ------------------------------------------------------------
consensus_12509#2 GCTCGCCTTTTCCGCCCCTATAAAACGCTCCTCGCGTTCCCCCTGTCTCCCCACAGCGAT 96
consensus_12509#4 GTCGCCGGCACGCCACAGCAAAGGCAAACCCGCAGCAGCACGAACAAACAGGCGAGCGAT 120
consensus_12509#6 ------------------------------------------------------------
consensus_12509#5 GTCGCCGGCACGCCACAGCAAAGGCAAACCCGCAGCAGCACGAACAAACAGGCGAGCGAT 180
consensus_12509#0 GTCGCCGGCACGCCACAGCAAAGGCAAACCCGCAGCAGCACGAACAAACAGGCGAGCGAT 141
consensus_12509#1 ----ACGAGGGAACACA-CAGGGTAGCGCTCGCGTAGTCGCGTACTCCCCGGCCTGCTCC 55
consensus_12509#3 -TCTCCGAACGAACACA-CAGGGTAGCGCTCGCGTAGTCGCGTACTCCCCGGCCTGCTCC 58
consensus_12509#2 CTCTCCGAACGAACACA-CAGGGTAGCGCTCGCGTAGTCGCGTACTCCCCGGCCTGCTCC 155
consensus_12509#4 GGGAGGAGGCGAGGCCACCAGCGGAGGAGGAGGAGGGTTCC----GCGCGCGGGTGGAGC 176
consensus_12509#6 -------------ACCACCGGTGTTAGCGGCGGCGGATTCC----GCAGGCGGTTGGAGT 43
consensus_12509#5 GGGAGGAGGCGAGGCCACCAGCGGAGGAGGAGGAGGGTTCC----GCGCGCGGGTGGAGC 236
consensus_12509#0 GGGAGGAGGCGAGGCCACCAGCGGAGGAGGAGGAGGGTTCC----GCGCGCGGGTGGAGC 197
consensus_12509#1 TCACACAGACGCGATGGCCCAGGGAAGAGGCAGTGCATTTCAGGGGCTCGCCCTCGGCTT 115
consensus_12509#3 TCACACAGACGCGATGGCCCAGGGAAGAGGCAGTGCAGCGCAGGGGCTCGCCCTCGGCTT 118
consensus_12509#2 TCACACAGACGCGATGGCCCAGGGAAGAGGCAGTGCAGCGCAGGGGCTCGCCCTCGGCTT 215
** * * ** * * * ** ** **
consensus_12509#4 ACTACCTGTACAGCGGCGAGAAGAAGCACGTCGTCGCCGGCATCGCCATCTTCGCCGCCA 236
consensus_12509#6 ACTACCTGTACAGCGGCGAGAAGAAGCACGTCGTCGCCGGCATCGCCATCTTCGCCGCCA 103
consensus_12509#5 ACTACCTGTACAGCGGCGAGAAGAAGCACGTCGTCGCCGGCATCGCCATCTTCGCCGCCA 296
consensus_12509#0 ACTACCTGTACAGCGGCGAGAAGAAGCACGTCGTCGCCGGCATCGCCATCTTCGCCGCCA 257
consensus_12509#1 GCTCCTCGTGTGCCTCCTCGNCGGCTC-CGACGTCGT-GCCGCCGCCACCTACAACGNCG 173
consensus_12509#3 GCTCCTCGTGTGCCTCCTCGTCGGCTC-CGACGTCGCCGCCGCCGCCACCTACAACGTCG 177
consensus_12509#2 GCTCCTCGTGTGCCTCCTCGTCGGCTC-CGACGTCGCCGCCGCCGCCACCTACAACGTCG 274
** * ** * * * * * ** ***** * * ***** ** * ** *
consensus_12509#4 TCTTCGGCGTCCCCTGGTACCTCATGACCCGAGGGGCAAAGCATCAGTCGCACCAAGATT 296
consensus_12509#6 TCTTCGGCGTTCCCTGGTACTTCATGAGCCGAGGGACAAAGCATCAATCTCACCAAGATT 163
consensus_12509#5 TCTTCGGCGTCCCCTGGTACCTCATGACCCGAGGGGCAAAGCATCAGTCGCACCAAGATT 356
consensus_12509#0 TCTTCGGCGTCCCCTGGTACCTCATGACCCGAGGGGCAAAGCATCAGTCGCACCAAGATT 317
consensus_12509#1 ACTG-GNCGATCGGCGCGGACAGCTGGNCCAAGGGCAAGAACTTCCGCGCCGGTGACGTC 232
consensus_12509#3 ACTG-GTCGTTCGGCGCGGACAGCTGGTCCAAGGGCAAGAACTTCCGCGCCGGTGACGTC 236
consensus_12509#2 ACTG-GTCGTTCGGCGCGGACAGCTGGTCCAAGGGCAAGAACTTCCGCGCCGGTGACGTC 333
** * ** * * ** ** **** * * * ** * * *
consensus_12509#4 ACATGGAAAGAGCTAACAAGGCGAGGTCGGAGAGGCTTTCTTCTGGACAGGCATCTTCGC 356
consensus_12509#6 ACATGGAAAAAGCTAACAAGGCGAGGTCGGAGAGACTTTCTTCTGGACAGTCATCAGCAC 223
consensus_12509#5 ACATGGAAAGAGCTAACAAGGCGAGGTCGGAGAGGCTTTCTTCTGGACAGGCATCTTCGC 416
consensus_12509#0 ACATGGAAAGAGCTAACAAGGCGAGGTCGGAGAGGCTTTCTTCTGGACAGGCATCTTCGC 377
consensus_12509#1 -CTTGTGTTCAGCTAC---GACCCGTCCGTGCACAACGTGGTGGCGGTGGACGCCGGCGG 288
consensus_12509#3 -CTTGTGTTCAGCTAC---GACCCGTCCGTGCACAACGTGGTGGCGGTGGACGCCGGCGG 292
consensus_12509#2 -CTTGTGTTCAGCTAC---GACCCGTCCGTGCACAACGTGGTGGCGGTGGACGCCGGCGG 389
* ** ***** * * * ** * * * * * * * *
consensus_12509#4 CAAAAGAGTGAAACAGTAATCCCC--TAACTCAGATTTGCAAAACCTCAGGCCGACACAG 414
consensus_12509#6 CAAAAGCATGAAGTAGTAATCCG---TAACTCAGATCTGTGAAACCTCAG-CATTCATAG 279
consensus_12509#5 CAAAAGAGTGAAACAGTAATCCCC--TAACTCAGATTTGCAAAACCTCAGGCCGACACAG 474
consensus_12509#0 CAAAAGAGTGAAACAGGAAGGCATA-CAACTTCCGTTGCAGTGAGCT--GGTTGATTCAA 434
consensus_12509#1 CTACAGCGGCTGCCGGGAGTCCGGCACCAAGTACAGCTCCGGGAAC---GACCGCATCAC 345
consensus_12509#3 CTACAGCGGCTGCCGGGAGTCCGGCACCAAGTACAGCTCCGGGTAC---GACCGCATCAC 349
consensus_12509#2 CTACAGCGGCTGCCGGGAGTCCGGCACCAAGTACAGCTCCGGGAAC---GACCGCATCAC 446
* * ** * * * * * * *
consensus_12509#4 CTATGATA--------ATCTGAGAATTCGATCC-TGTTGTGAAATAAGCAGACCATCTC- 464
consensus_12509#6 TTTTGATCTATACTCTAGCTGAGCACTTTATCTATTGGGTGAAATAAGCAGGCCATCTCT 339
consensus_12509#5 CTATGATA--------ATCTGAGAATTCGATCC-TGTTGTGAAATAAGCAGACCATCTC- 524
consensus_12509#0 GCTCAATCTGGA----TGCATGGTGCTTTGTCTACAACCCAATGTAGGCCGTGTGGCAT- 489
consensus_12509#1 GCTCGGCCGCGG----CACGAGCTACTTCATCTGCAGCTTA-TCCGGCCACTGTGGCGC- 399
consensus_12509#3 GCTCGGCCGCGG----CACGAGCTACTTCATCTGCAGCTTC-TCCGGCCACTGTGGCGC- 403
consensus_12509#2 GCTCGGCCGGGG----CACGAGCTACTTCATCTGCAGCTTCCTTCGGCCACTGTGGCGC- 501
* * ** * *
consensus_12509#4 --GATTCTCATCTTTCAG--------TTGTAGGAAACATGGGTTGAATGTAATACGTCAC 514
consensus_12509#6 TGAATATTGACCCTGATGACATGATCTTGTCAGTTTCAGAAACCATGTGTAA-ACTTCAC 398
consensus_12509#5 --GATTCTCATCTTTCAG--------TTGTAGGAAACATGGGTTGAATGTAATACGTCAC 574
consensus_12509#0 ----GCCTGTTTATTCAG------TGTCTAAAATTGCAAAGTTTTCTTCCCGTCGCCCAA 539
consensus_12509#1 -AGGGAT-GAAGATGGCC-------GTCACCGTCAGCTGAAGAGGAAGCCAACGCAGCAC 450
consensus_12509#3 -AGGGAT-GAAGATGGCC-------GTCACCGCCAGCTGAAGAGGAAGCCAACGCAGCAC 454
consensus_12509#2 -AAGGATTGAAGATGGCC-------CTCACCCGCCGCTGAAAAGGAAGCCCACGCAGCA- 552
* * * **
consensus_12509#4 ATGA---AATTTTGTCAAATGCAGCTAGCTCTCTTTACATTCCGCACTATTCTACAAGGA 571
consensus_12509#6 ATGA---AATTTTGTCAAATGTAGCCT-TTCTGTTCACTTTATGCGCAATTCTGTA-GGA 453
consensus_12509#5 ATGA---AATTTTGTCAAA----------------------------------------- 590
consensus_12509#0 AAGATTTAATTTTTTTCTACTTGCCCCTATCTCTGAACTGTGCTGTTTATAGTTTTTGCA 599
consensus_12509#1 AAAAGCAGGGCCAGGCTGCTGCCGCTCTAGCCTGTAGCTATACATATTGGACATGTGTGG 510
consensus_12509#3 AAAAGCAGGGCCAGGCTGCTGCCGCTCTAGCCTGTAGCTATACATATTT-ACATGTGTCG 513
consensus_12509#2 AAAAGCAAGGCCAGGCTGTTGCCGTTC-AGCCTGGAGCTAT-CCTATT--ACATGTGTC- 607
* *
consensus_12509#4 GATGATTGACAAAGACAAACACCTGATTTATTTGTCTCAAATGACGATTCTAGAGCCAAT 631
consensus_12509#6 GATGATCAACAAG------CACCAGATTTTTGTCTATCAAAT----ATTCAAATGGTGG- 502
consensus_12509#5 ------------------------------------------------------------
consensus_12509#0 GATGACTGAATACTAACCATTACCAATTTAATTAGCGTTGCTATGGATAGGACAACTGCC 659
consensus_12509#1 GCCGAACAGTAATAATAAGAGGCAGGAGCCAGCACCGCGTG-----ATCGGGCAAGTTTT 565
consensus_12509#3 CCCGAACAGCAATAATAAGAGGCAGCAGCCAGCACCGCGTC-----ATTGTGCAGGTTTT 568
consensus_12509#2 -CCCGACCGCA-TAATA-GAGGCAG--ACCCGCACCG-GTT-----ATCCGCCAGGTTG- 655
consensus_12509#4 TACCTTGGCTTGAGATAAAAAAAAAAAAA------------------------------- 660
consensus_12509#6 ------------------------------------------------------------
consensus_12509#5 ------------------------------------------------------------
consensus_12509#0 TCCAACTCCATGGAGTTGTGTTGATATGCAA--TCTTCCCCATCAATTGAAATGTGGTGG 717
consensus_12509#1 GATGACATAGTGCTTGGGAAACAATGTATA----CAGGGCTGTGTGTGGGGAGAT-ATAC 620
consensus_12509#3 GTTGTCATAGTGCGTCGCAAACAATATATA----CAGCCATATATGTGTGTT-AT-GTAG 622
consensus_12509#2 GTTGGC-TAATGCGTGGGAGACATATTACAGGCTTATTGTTGTTTTCAGGAGAGTCGTCC 714
consensus_12509#4 ------------------------------------------------------------
consensus_12509#6 ------------------------------------------------------------
consensus_12509#5 ------------------------------------------------------------
consensus_12509#0 ATTTAAACAAAAAAGAAAGAAAGAAACAAATGCACATCCATCTGAAAAACCCAGAAGGAA 777
consensus_12509#1 GGAGAGCGGCACGCGACGCCTCGAGCGCCGGGCCCGAGGCGGTGGTCGGACGCAGACGCT 680
consensus_12509#3 GGAGAGTGGTAGGTGAGGCAT-GAGTGATGTGTGCTTGTATGTATT---ATCAGAAGTCA 678
consensus_12509#2 GGGGGATTATACGCCTCCCTCTTGAT--CTTGCCACTGGCAGTCGCT--TCTCGAAACCT 770
consensus_12509#4 ------------------------------------------------------------
consensus_12509#6 ------------------------------------------------------------
consensus_12509#5 ------------------------------------------------------------
consensus_12509#0 AATATTGTCATCTACAGAATTGCAGTCTGAAGATTTGCTGTTCTTTCTCTGCTGGAAAAG 837
consensus_12509#1 GTACCGAACGAGTGCCGCTATGCAAGATCGCGCTCAAACAGCATACAGCACCCAAGCAAG 740
consensus_12509#3 GGAGTTGATTACTAGTAAAGCACATCAGCTTGTTTG------------------------ 714
consensus_12509#2 AAGGTTGGCGGGTGACAAAAAGCTAGAAGGCGGGGAGGCAGCTGGTGTTGAGCGATTTTG 830
consensus_12509#4 ------------------------------------------------------------
consensus_12509#6 ------------------------------------------------------------
consensus_12509#5 ------------------------------------------------------------
consensus_12509#0 AAGCAGTGACAACAAGAAGCTGACACAAGCGTGCCTATGGTTAGGGAGATCCAAATTAGA 897
consensus_12509#1 CAGATATGATGACTG---TCACAGCCTCCATCGCCCGCCCCTGGGCAT--GCCGCTGCAC 795
consensus_12509#3 ------------------------------------------------------------
consensus_12509#2 TCGCCGGGGGTCCCGGCCTTAGACGTTTGATTGCCTGCCCTCCCGCCTTGGTTGTTTGGT 890
consensus_12509#4 ------------------------------------------------------------
consensus_12509#6 ------------------------------------------------------------
consensus_12509#5 ------------------------------------------------------------
consensus_12509#0 GAAGAATGATTCTGAACTCTTCCCATGTCGGCATTAAACTACAATTCGACGGGGTTGATT 957
consensus_12509#1 A-GCCGGACCGTCCCGCGCATGCACCATCACTCGTGCCCCTATCCCCGCCCATTCATCGT 854
consensus_12509#3 ------------------------------------------------------------
consensus_12509#2 GCGCAGCGCTAGTCGGGAAACAGTCTGGAACCTGTGCGAGTGTGACCCCGCGCGC----- 945
consensus_12509#4 ------------------------------------------------------------
consensus_12509#6 ------------------------------------------------------------
consensus_12509#5 ------------------------------------------------------------
consensus_12509#0 AATCATCACTACAGAATCAAGTCGTGGCTTACTGGCATATCAAGAGGGGAAAAGGTGAAT 1017
consensus_12509#1 TCCACACGCGATGGGTGGGCCCGTCATGCGCGCTTCCCCCCGCCAGCGCACCACACACAC 914
consensus_12509#3 ------------------------------------------------------------
consensus_12509#2 ------------------------------------------------------------
consensus_12509#4 ------------------------------------------------------------
consensus_12509#6 ------------------------------------------------------------
consensus_12509#5 ------------------------------------------------------------
consensus_12509#0 GGTTTGATACTTCGATGAAAACCACGCGGATTCCCCAGAAATAGTCCTCGTTACTCGTCA 1077
consensus_12509#1 TACGCCTCCCATAGTATACGTGTGAGCGGCGACCATAGAAAGAGACAAGAGTAAGAATAC 974
consensus_12509#3 ------------------------------------------------------------
consensus_12509#2 ------------------------------------------------------------
consensus_12509#4 ------------------------------------------------------------
consensus_12509#6 ------------------------------------------------------------
consensus_12509#5 ------------------------------------------------------------
consensus_12509#0 GGTGCACACGCTTACAGCACCAGTACTTCTGACATTGTGATTAGTTTCCATAGTCCCATG 1137
consensus_12509#1 TCGATTCGGACTCTCGCGCCCTC------------------------------------- 997
consensus_12509#3 ------------------------------------------------------------
consensus_12509#2 ------------------------------------------------------------
consensus_12509#4 ------------------------------------------------------------
consensus_12509#6 ------------------------------------------------------------
consensus_12509#5 ------------------------------------------------------------
consensus_12509#0 TCCTTGTTTTGATTTCTTTTTAAGGTAATGTGTTCTTGTTTTTCTATGGCAAACATGATA 1197
consensus_12509#1 ------------------------------------------------------------
consensus_12509#3 ------------------------------------------------------------
consensus_12509#2 ------------------------------------------------------------
consensus_12509#4 ------------------------------------------------------------
consensus_12509#6 ------------------------------------------------------------
consensus_12509#5 ------------------------------------------------------------
consensus_12509#0 GGGGCATTCAAAACACCCTATGGTTTTCGAGCTTTCGACTTTTGATGCAACATAAGTAGG 1257
consensus_12509#1 ------------------------------------------------------------
consensus_12509#3 ------------------------------------------------------------
consensus_12509#2 ------------------------------------------------------------
consensus_12509#4 -----------------------
consensus_12509#6 -----------------------
consensus_12509#5 -----------------------
consensus_12509#0 GTGTAGCTAAAATTAGTAAAGAC 1280
consensus_12509#1 -----------------------
consensus_12509#3 -----------------------
consensus_12509#2 -----------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||