cluster # 12528

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Oryza sativa
cluster # 12528 cluster # 12528 Sequences # 10 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12528#0 length = 1432 sequences # 7
consensus_12528#1 length = 647 sequences # 1

consensus_12528#2 length = 634 sequences # 1
consensus_12528#3 length = 336 sequences # 1

consensusID : consensus_12528#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1432
fasta sequence

                              [GCTCGTCTCCACCGCGAGCGAAACCCAAAAAGGCAATGGCGACCGACGGCGACGCCCTCGAGTCCCAGGCGGCGGCGGCGGCCGAGGCGGCGCGGGAGCTGCGCGAGGCCGCCGCGTCCCTCGTCGCCCGCCGCTCCGCCGACGAGGACGCGCTCCGCCGCCGCGCCACGGCGCTCGACGCCGACCTCCGCCGCCTCCAGGCCTCCCTCTCCACCCTCGCCCCCACCACGCTCGACAAGGTTGAGGAGGAACTGGAGCGTGCCAGGGTAACAATCTCAGATAGTGACGTGGCTGCATTTCTCCCAAGCAAGCGGAATGGGAAGTTCCTCAAGACCTTTGTTGGCCCTGTAAATGTGCGGGTGGCGAGAAAAGAAGATAAGCTCAGAGTGAAGGACGAGTACAACAACTACAGGGATAGGGCTGCCTATATGTTTCTATTGTTCCCATCCATTCTCCTCCTACTTAGATGGTGGATATGGGATGGATGCCTTCCAGCCTTGGCAGTTCAGATGTACCAGGCTTGGCTACTATTCCTTTACACAAGTTTTGCTCTGCGGGAGAATGTGTTGATTGTAAATGGAAGTGATATTCGTCCTTGGTGGATATACCACCACTATTTAGCAATGCTAATGGCTCTCGTTAGCCTTACATGGGAGATAAAAGGACAGCCTGATTGTTCCAGCAAGCAGAGGGGGGTACAACTTTTCCTGCGGTGGGCAATCATGCAAGGAATTGCAATGCATCTACAGAATAGGTACCAGCGTCAAAGATTGCGCACCCGGATAGCTCTAGGAAAGGCTAAAAGAATGGATGTTGTTGCTGGAGAAACAGCTGGTGTGGAAGGGCAGCTCTTGCTACTTTACCCGGTCCTTTTCACATTACAGGTTTTCGAAGGATATGTTGGAGTATTACTTCTTAAGACGGCTTTGCACGGGCTTGCATCGGAATGGCAGGTTGTAGTTTGTGGGATCTTGCTGGTGGTAATGGCAGTCGGCAACTTTGTCAACACGATGGAGACTTTGATGTTAAAATTGAGGTTCAAAGCAAAAATGAAAAGAGCAAAGAGCAGGCAGGATCTCAGTCGCCAACACCAAAATTGACAAAGTGACCCATAATGGTGACTCCATGCTTGGAAACAGCGAATGCTGACACACCATCTCTCTTGTAAATCCCTTAATCCATAAACTGTTTTGGCTGCCCATGATTTTGTGTTTTGGTAATTGTTTCACATTGAAGTTCATATTCTACGGTCAATGCACGATTAAAAACACTGTTAACTTTACCACAGATGGGAACGCTAAATT-TATGTGATTTGTATGTGCTAACAGCGCTTGCCTAAAAAAAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTTGTTTTC]

[+] EMBL AK060675             [GCTCGTCTCCACCGCGAGCGAAACCCAAAAAGGCAATGGCGACCGACGGCGACGCCCTCGAGTCCCAGGCGGCGGCGGCGGCCGAGGCGGCGCGGGAGCTGCGCGAGGCCGCCGCGTCCCTCGTCGCCCGCCGCTCCGCCGACGAGGACGCGCTCCGCCGCCGCGCCACGGCGCTCGACGCCGACCTCCGCCGCCTCCAGGCCTCCCTCTCCACCCTCGCCCCCACCACGCTCGACAAGGTTGAGGAGGAACTGGAGCGTGCCAGGGTAACAATCTCAGATAGTGACGTGGCTGCATTTCTCCCAAGCAAGCGGAATGGGAAGTTCCTCAAGACCTTTGTTGGCCCTGTAAATGTGCGGGTGGCGAGAAAAGAAGATAAGCTCAGAGTGAAGGACGAGTACAACAACTACAGGGATAGGGCTACCTATATGTTTCTATTGTTCCCATCCATTCTCCTCCTACTTAGATGGTGGATATGGGATGGATGCCTTCCAGCCTTGGCAGTTCAGATGTACCAGGCTTGGCTACTATTCCTTTACACAAGTTTTGCTCTGCGGGAGAATGTGTTGATTGTAAATGGAAGTGATATTCGTCCTTGGTGGATATACCACCACTATTTAGCAATGCTAATGGCTCTCGTTAGCCTTACATGGGAGATAAAAGGACAGCCTGATTGTTCCAGCAAGCAGAGGGGGGTACAACTTTTCCTGCGGTGGGCAATCATGCAAGGAATTGCAATGCATCTACAGAATAGGTACCAGCGTCAAAGATTGCGCACCCGGATAGCTCTAGGAAAGGCTAAAAGAATGGATGTTGTTGCTGGAGAAACAGCTGGTGTGGAAGGGCAGCTCTTGCTACTTTACCCGGTCCTTTTCACATTACAGGTTTTCGAAGGATATGTTGGAGTATTACTTCTTAAGACGGCTTTGCACGGGCTTGCATCGGAATGGCAGGTTGTAGTTTGTGGGATCTTGCTGGTGGTAATGGCAGTCGGCAACTTTGTCAACACGATGGAGACTTTGATGTTAAAATTGAGGTTCAAAGCAAAAATGAAAAGAGCAAAGAGCAGGCAGGATCTCAGTCGCCAACACCAAAATTGACAAAGTGACCCATAATGGTGACTCCATGCTTGGAAACAGCGAATGCTGACACACCATCTCTCTTGTAAATCCCTTAATCCATAAACTGTTTTGGCTGCCCATGATTTTGTGTTTTGGTAATTGTTTCACATTGAAGTTCATATTCTACGGTCAATGCACGATTAAAAACACTGTTAACTTTACCACAGATGGGAACGCTAAATT TATGTGATT                                                                                                                       ]
[+] EMBL CB660562             [              CGAGCGAAACCCAAAAAGGCAATGGCGACCGACGGCGACGCCCTCGAGTCCCAGGCGGCGGCGGCGGCCGAGGCGGCGCGGGAGCTGCGCGAGGCCGCCGCGTCCCTCGTCGCCCGCCGCTCCGCCGACGAGGACGCGCTCCGCCGCCGCGCCACGGCGCTCGACGCCGACCTCCGCCGCCTCCAGGCCTCCCTCTCCACCCTCGCCCCCACCACGCTCGACAAGGTTGAGGAGGAACTGGAGCGTGCCAGGGTAACAATCTCAGATAGTGACGTGGCTGCATTTCTCCCAAGCAAGCGGAATGGGAAGTTCCTCAAGACCTTTGTTGGCCCTGTAAATGTGCGGGTGGCGAGAAAAGAAGATAAGCTCAGAGTGAAGGACGAGTACAACAACTACAGGGATAGGGCTGCCTATATGTTTCTATTGTTCCCATCCATTCTCCTCCTACTTAGATGGTGGATATGGGATGGATGCCTTCCAGCCTTGGCAGTTCAGATGTACCAGGCTTGGCTACTATTCCTTTACACAAGTTTTGCTCTGCGGGAGAATGTGTTGATTGTAAATGGAAGTGATATTCGTCCTTGGTGGATATACCACCACTATTTAGCAATGCTAATGGCTCTCGTTAGCCTTACATGGGAGATAAAAGGACAGCCTGATTGTTCCAGCAAGCAGAGGGGGGTACAACTTTTCCTGCGGTGGGCAATCATGCAAGGTATTGCAATGCATCTAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CB658177             [                                                                                                          GGCCGCCGCGTCCCTCGTCGCCCGCCGCTCCGCCGACGAGGACGCGCTCCGCCGCCGCGCCACGGCGCTCGACGCCGACCTCCGCCGCCTCCAGGCCTCCCTCTCCACCCTCGCCCCCACCACGCTCGACAAGGTTGAGGAGGAACTGGAGCGTGCCAGGGTAACAATCTCAGATAGTGACGTGGCTGCATTTCTCCCAAGCAAGCGGAATGGGAAGTTCCTCAAGACCTTTGTTGGCCCTGTAAATGTGCGGGTGGCGAGAAAAGAAGATAAGCTCAGAGTGAAGGACGAGTACAACAACTACAGGGATAGGGCTGCCTATATGTTTCTATTGTTCCCATCCATTCTCCTCCTACTTAGATGGTGGATATGGGATGGATGCCTTCCAGCCTTGGCAGTTCAGATGTACCAGGCTTGGCTACTATTCCTTTACACAAGTTTTGCTCTGCGGGAGAATGTGTTGATTGTAAATGGAAGTGATATTCGTCCTTGGTGGATATACCACCACTATTTAGCAATGCTAATGGCTCTCGTTAGCCTTACATGGGAGATAAAAGGACAGCCTGATTGTTCCAGCAAGCAGAGGGGGGTACAACTTTTCCTGCGGTGGGCAATCATGCAAGGAATTGCAATGCATCTACAGAATAGGTACCAGCGTCAAAGATTGCGCACCCGGATAGCTCTAGGAAAGGCTAAAAGAATGGATGTTGTTGCTGGAGAAACAGCTGGTGTGGAAGGGCAGCTCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CB660563             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TGGATATGGGATGGATGCCTCCCAGCCTTGGCAGTTCAGATGTACCAGGCTTGGCTACTATTCCTTTACACAAGTTTTGCTCTGCGGGAGAATGTGTTGATTGTAAATGGAAGTGATATTCGTCCTTGGTGGATATACCACCACTATTTAGCAATGCTAATGGCTCTCGTTAGCCTTACATGGGAGATAAAAGGACAGCCTGATTGTTCCAGCAAGCAGAGGGGGGTACAACTTTTCCTGCGGTGGGCAATCATGCAAGGAATTGCAATGCATCTACAGAATAGGTACCAGCGTCAAAGATTGCGCACCCGGATAGCTCTAGGAAAGGCTAAAAGAATGGATGTTGTTGCTGGAGAAACAGCTGGTGTGGAAGGGCAGCTCTTGCTACTTTACCCGGTCCTTTTCACATTACAGGTTTTCGAAGGATATGTTGGAGTATTACTTCTTAAGACGGCTTTGCACGGGCTTGCATCGGAATGGCAGGTTGTAGTTTGTGGGATCTTGCTGGTGGTAATGGCAGTCGGCAACTTTGTCAACACGATGGAGACTTTGATGTTAAAATTGAGGTTCAAAGCAAAAATGAAAAGAGCAAAGAGCAGGCAGGATCTCAGTCGCCAACACCAAAATTGACAAAGTGACCCATAATGGTGACTCCATGCTTGGAAACAGCGAATGCTGACACACCATCTCTCTTGTAAATCCCTTAATCCATAAACTGTTTTGGCTGCCCATGATTTTGTGTTTTGGTAATTGTTTCACATTGAAGTTCATATTCTACGGTCAATGCACGATTAAAAACACTGTTAACTTTACCACAGATGGGAACGGTAAATT TATGTGATTT                                                                                                                      ]
[-] EMBL CB658178             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GATTGTAAATGGAAGTGATATTCGTCCTTGGTGGATATACCACCACTATTTAGCAATGCTAATGGCTCTCGTTAGCCTTACATGGGAGATAAAAGGACAGCCTGATTGTTCCAGCAAGCAGAGGGGGGTACAACTTTTCCTGCGGTGGGCAATCATGCAAGGAATTGCAATGCATCTACAGAATAGGTACCAGCGTCAAAGATTGCGCACCCGGATAGCTCTAGGAAAGGCTAAAAGAATGGATGTTGTTGCTGGAGAAACAGCTGGTGTGGAAGGGCAGCTCTTGCTACTTTACCCGGTCCTTTTCACATTACAGGTTTTCGAAGGATATGTTGGAGTATTACTTCTTAAGACGGCTTTGCACGGGCTTGCATCGGAATGGCAGGTTGTAGTTTGTGGGATCTTGCTGGTGGTAATGGCAGTCGGCAACTTTGTCAACACGATGGAGACTTTGATGTTAAAATTGAGGTTCAAAGCAAAAATGAAAAGAGCAAAGAGCAGGCAGGATCTCAGTCGCCAACACCAAAATTGACAAAGTGACCCATAATGGTGACTCCATGCTTGGAAACAGCGAATGCTGACACACCATCTCTCTTGTAAATCCCTTAATCCATAAACTGTTTTGGCTGCCCATGATTTTGTGTTTTGGTAATTGTTTCACATTGAAGTTCATATTCTACGGTCAATGCACGATTAAAAACACTGTTAACTTTACCACAGATGGGAACGCTAAATTGTATGTGATTTGTATGTGCTAACAGCGCTTGCCTAAAAAAAGGG                                                                                     ]
[+] EMBL CA758899             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ACTATTTAGCAATGCTAATGGCTCTCGTTAGCCTTACATGGGAGATAAAAGGACAGCCTGATTGTTCCAGCAAGCAGAGGGGGGTACAACTTTTCCTGCGGTGGGCAATCATGCAAGGAATTGCAATGCATCTACAGAATAGGTACCAGCGTCAAAGATTGCGCACCCGGATAGCTCTAGGAAAGGCTAAAAGAATGGATGTTGTTGCTGGAGAAACAGCTGGTGTGGAAGGGCAGCTCTTGCTACTTTACCCGGTCCTTTTCACATTACAGGTTTTCGAAGGATATGTTGGAGTATTACTTCTTAAGACGGCTTTGCACGGGCTTGCATCGGAATGGCAGGTTGTAGTTTGTGGGATCTTGCTGGTGGTAATGGCAGTCGGCAACTTTGTCAACACGATGGAGACTTTGATGTTAAAATTGAGGTTCAAAGCAAAAATGAAAAGAGCAAAGAGCAGGCAGGATCTCAGTCGCCAACACCAAAATTGACAAAGTGACCCATAATGGTGACTCCATGCTTGGAAACAGCGAATGCTGACACACCATCTCTCTTGTAAATCCCTTAATCCATAAACTGTTTTGGCTGCCCATGATTTTGTGTTTTGGTAATTGGTTCACATTGAAGTTCATATTCTACGGTCAATGCACGATT AAAACACTGTT                                                                                                                                                              ]
[+] EMBL CF310504             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       gagtagAAAGTGACCCATAATGGTGACTCCATGCTTGGAAACAGCGAATGCTGACACACCATCTCTCTTGTAAATCCCTTAATCCATAAACTGTTTTGGCTGCCCATGATTTTGTGTTTTGGTAATTGTTTCACATTGAAGTTCATATTCTACGGTCAATGCACGATTAAAAACACTGTTAACTTTACCACAGATGGGAACGCTAAATT TATGTGATTTGTATGTGCTAACAGCGCTTGCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTTGTTTTC]




>consensus_12528#0
GCTCGTCTCCACCGCGAGCGAAACCCAAAAAGGCAATGGCGACCGACGGCGACGCCCTCG
AGTCCCAGGCGGCGGCGGCGGCCGAGGCGGCGCGGGAGCTGCGCGAGGCCGCCGCGTCCC
TCGTCGCCCGCCGCTCCGCCGACGAGGACGCGCTCCGCCGCCGCGCCACGGCGCTCGACG
CCGACCTCCGCCGCCTCCAGGCCTCCCTCTCCACCCTCGCCCCCACCACGCTCGACAAGG
TTGAGGAGGAACTGGAGCGTGCCAGGGTAACAATCTCAGATAGTGACGTGGCTGCATTTC
TCCCAAGCAAGCGGAATGGGAAGTTCCTCAAGACCTTTGTTGGCCCTGTAAATGTGCGGG
TGGCGAGAAAAGAAGATAAGCTCAGAGTGAAGGACGAGTACAACAACTACAGGGATAGGG
CTGCCTATATGTTTCTATTGTTCCCATCCATTCTCCTCCTACTTAGATGGTGGATATGGG
ATGGATGCCTTCCAGCCTTGGCAGTTCAGATGTACCAGGCTTGGCTACTATTCCTTTACA
CAAGTTTTGCTCTGCGGGAGAATGTGTTGATTGTAAATGGAAGTGATATTCGTCCTTGGT
GGATATACCACCACTATTTAGCAATGCTAATGGCTCTCGTTAGCCTTACATGGGAGATAA
AAGGACAGCCTGATTGTTCCAGCAAGCAGAGGGGGGTACAACTTTTCCTGCGGTGGGCAA
TCATGCAAGGAATTGCAATGCATCTACAGAATAGGTACCAGCGTCAAAGATTGCGCACCC
GGATAGCTCTAGGAAAGGCTAAAAGAATGGATGTTGTTGCTGGAGAAACAGCTGGTGTGG
AAGGGCAGCTCTTGCTACTTTACCCGGTCCTTTTCACATTACAGGTTTTCGAAGGATATG
TTGGAGTATTACTTCTTAAGACGGCTTTGCACGGGCTTGCATCGGAATGGCAGGTTGTAG
TTTGTGGGATCTTGCTGGTGGTAATGGCAGTCGGCAACTTTGTCAACACGATGGAGACTT
TGATGTTAAAATTGAGGTTCAAAGCAAAAATGAAAAGAGCAAAGAGCAGGCAGGATCTCA
GTCGCCAACACCAAAATTGACAAAGTGACCCATAATGGTGACTCCATGCTTGGAAACAGC
GAATGCTGACACACCATCTCTCTTGTAAATCCCTTAATCCATAAACTGTTTTGGCTGCCC
ATGATTTTGTGTTTTGGTAATTGTTTCACATTGAAGTTCATATTCTACGGTCAATGCACG
ATTAAAAACACTGTTAACTTTACCACAGATGGGAACGCTAAATTTATGTGATTTGTATGT
GCTAACAGCGCTTGCCTAAAAAAAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTTGTTTTC

consensusID : consensus_12528#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 647
fasta sequence

                              [GAATGTTTGTTGCCTGGAGAACACACCTGGTTGNAAGGCCAGCTCTGGCTACTTACCCGTCCTGGTNCACATTACAGGTTTTCGAAGGATATGTTGGAGTATTACTTCTTAAGACGGCTTGCACGGGCTTGCATCGGAATGGCAGGTTGTAGTTTGTGGGATCTTGCTGGTGGTAATGGCACGTCGGCAACTTTGTCAACACCGATGGAGACTTTGATGTTAAAATTGAGGTTCCAAGCCAAAATGAAAAGAGCACAAGAGCCAGGCAGGATCTCAGTCGCCAACACCAAAATTGACAAAGTGACCCATAATGGTGACTCCATGCTTGGAAACAGCGAATGCTGACACACCATCTCTCTTGTAAATCCCTTAATCCATAAACTGTTTTGGCTGCCCATGATTTTGTGTTTTGGTAATTGTTTCACATTGAAGTTCATATTCTACGGTCAATGCACGATTAAAAACACTGTTAACTTTACCACAGATGGGAACGCTAAATTTATGTGATTTGTATGTGCTAACAGCGCTTGCCTAAAATTGCAGAGAACAATAATGTATTATGTCAGTAGTCAGTAGATTCCGTGGCTCTAATTGCAGAGAGCTAGTAACATGCTGCCCAATGAACAGTCCACAGCTCAGACCAAAAA]

[+] EMBL BQ907182             [GAATGTTTGTTGCCTGGAGAACACACCTGGTTGNAAGGCCAGCTCTGGCTACTTACCCGTCCTGGTNCACATTACAGGTTTTCGAAGGATATGTTGGAGTATTACTTCTTAAGACGGCTTGCACGGGCTTGCATCGGAATGGCAGGTTGTAGTTTGTGGGATCTTGCTGGTGGTAATGGCACGTCGGCAACTTTGTCAACACCGATGGAGACTTTGATGTTAAAATTGAGGTTCCAAGCCAAAATGAAAAGAGCACAAGAGCCAGGCAGGATCTCAGTCGCCAACACCAAAATTGACAAAGTGACCCATAATGGTGACTCCATGCTTGGAAACAGCGAATGCTGACACACCATCTCTCTTGTAAATCCCTTAATCCATAAACTGTTTTGGCTGCCCATGATTTTGTGTTTTGGTAATTGTTTCACATTGAAGTTCATATTCTACGGTCAATGCACGATTAAAAACACTGTTAACTTTACCACAGATGGGAACGCTAAATTTATGTGATTTGTATGTGCTAACAGCGCTTGCCTAAAATTGCAGAGAACAATAATGTATTATGTCAGTAGTCAGTAGATTCCGTGGCTCTAATTGCAGAGAGCTAGTAACATGCTGCCCAATGAACAGTCCACAGCTCAGACCAAAAA]




>consensus_12528#1
GAATGTTTGTTGCCTGGAGAACACACCTGGTTGNAAGGCCAGCTCTGGCTACTTACCCGT
CCTGGTNCACATTACAGGTTTTCGAAGGATATGTTGGAGTATTACTTCTTAAGACGGCTT
GCACGGGCTTGCATCGGAATGGCAGGTTGTAGTTTGTGGGATCTTGCTGGTGGTAATGGC
ACGTCGGCAACTTTGTCAACACCGATGGAGACTTTGATGTTAAAATTGAGGTTCCAAGCC
AAAATGAAAAGAGCACAAGAGCCAGGCAGGATCTCAGTCGCCAACACCAAAATTGACAAA
GTGACCCATAATGGTGACTCCATGCTTGGAAACAGCGAATGCTGACACACCATCTCTCTT
GTAAATCCCTTAATCCATAAACTGTTTTGGCTGCCCATGATTTTGTGTTTTGGTAATTGT
TTCACATTGAAGTTCATATTCTACGGTCAATGCACGATTAAAAACACTGTTAACTTTACC
ACAGATGGGAACGCTAAATTTATGTGATTTGTATGTGCTAACAGCGCTTGCCTAAAATTG
CAGAGAACAATAATGTATTATGTCAGTAGTCAGTAGATTCCGTGGCTCTAATTGCAGAGA
GCTAGTAACATGCTGCCCAATGAACAGTCCACAGCTCAGACCAAAAA

consensusID : consensus_12528#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 634
fasta sequence

                              [ACTATTTAGCAATGCTAATGGCTCTCGTTAGCCTTACATGGGAGATAAAAGGACAGCCTGATTGTTCCAGCAAGCAGAGGGGGGTACAACTTTTTTTGCGGAGGGCAGGCATGCCCGGAACTGCCCCGCCTGTACCGACCGCGGGCCCGGTGGCTGCCATCGGGGACCCCCGCCTCTCCTCTCGGGGGGATTAGAGGTCCGGCAACCCACGGAGCCGCTCGCACGCCGCGGCGCTGGGGGCCGCGCGGCCGAAGCGGCCCGCGCAAGCGGAGCGGCCCCAGGGCGCTCGACCTCCAGTCGTCCGCGGCGTCCCGGCCTCCACGAGATCTGTCTCGCCCGCTGCTGCCCCGCCGCTCGGCACCCCGAGAGGGTGGGCCAGTTTGCTCTGATGGCCAGCTCGTGTAGGCGACGCGCTGTACGCGCGTATCTGCCGCGATGGACCACCATCTGACTCACTCACGCGTATCTTCCCTGAGTTGCGCGCGATTGTATTCACCAGGCCAGGCAACTCCGCCGTACTTAGCCCGTGCTGCGCATCGCCGCTAGTCGTATTCGGCCGCGATACTTCCCGCGGACCTGCCTACTATATCGACCACGCGTGGCCCACTGTCTCCTCACCCTCGGCGTTCGTGCC]

[+] EMBL CA757140             [ACTATTTAGCAATGCTAATGGCTCTCGTTAGCCTTACATGGGAGATAAAAGGACAGCCTGATTGTTCCAGCAAGCAGAGGGGGGTACAACTTTTTTTGCGGAGGGCAGGCATGCCCGGAACTGCCCCGCCTGTACCGACCGCGGGCCCGGTGGCTGCCATCGGGGACCCCCGCCTCTCCTCTCGGGGGGATTAGAGGTCCGGCAACCCACGGAGCCGCTCGCACGCCGCGGCGCTGGGGGCCGCGCGGCCGAAGCGGCCCGCGCAAGCGGAGCGGCCCCAGGGCGCTCGACCTCCAGTCGTCCGCGGCGTCCCGGCCTCCACGAGATCTGTCTCGCCCGCTGCTGCCCCGCCGCTCGGCACCCCGAGAGGGTGGGCCAGTTTGCTCTGATGGCCAGCTCGTGTAGGCGACGCGCTGTACGCGCGTATCTGCCGCGATGGACCACCATCTGACTCACTCACGCGTATCTTCCCTGAGTTGCGCGCGATTGTATTCACCAGGCCAGGCAACTCCGCCGTACTTAGCCCGTGCTGCGCATCGCCGCTAGTCGTATTCGGCCGCGATACTTCCCGCGGACCTGCCTACTATATCGACCACGCGTGGCCCACTGTCTCCTCACCCTCGGCGTTCGTGCC]




>consensus_12528#2
ACTATTTAGCAATGCTAATGGCTCTCGTTAGCCTTACATGGGAGATAAAAGGACAGCCTG
ATTGTTCCAGCAAGCAGAGGGGGGTACAACTTTTTTTGCGGAGGGCAGGCATGCCCGGAA
CTGCCCCGCCTGTACCGACCGCGGGCCCGGTGGCTGCCATCGGGGACCCCCGCCTCTCCT
CTCGGGGGGATTAGAGGTCCGGCAACCCACGGAGCCGCTCGCACGCCGCGGCGCTGGGGG
CCGCGCGGCCGAAGCGGCCCGCGCAAGCGGAGCGGCCCCAGGGCGCTCGACCTCCAGTCG
TCCGCGGCGTCCCGGCCTCCACGAGATCTGTCTCGCCCGCTGCTGCCCCGCCGCTCGGCA
CCCCGAGAGGGTGGGCCAGTTTGCTCTGATGGCCAGCTCGTGTAGGCGACGCGCTGTACG
CGCGTATCTGCCGCGATGGACCACCATCTGACTCACTCACGCGTATCTTCCCTGAGTTGC
GCGCGATTGTATTCACCAGGCCAGGCAACTCCGCCGTACTTAGCCCGTGCTGCGCATCGC
CGCTAGTCGTATTCGGCCGCGATACTTCCCGCGGACCTGCCTACTATATCGACCACGCGT
GGCCCACTGTCTCCTCACCCTCGGCGTTCGTGCC

consensusID : consensus_12528#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 336
fasta sequence

                              [CGACTATAACTCGATGCTCCGGAAAGTGCGCCTGACCATCACCACATTCGTCTTCCTCTGCTAATACTCCCCCCTTTATAGTCACGAAATAAATCGTNAATTTTTGCCCAGTGACCCCACTGAGCTATATTTGGTGTTCTTTTGGGATAAACCTTGTNTTTNTNCACCCANNTCTGAAATGCTTTTCAATTACTTTCTCTACGAGTTCAAAATGACACGATTAAANACACTGTTAACTTTACCACAGATGGGAACGCTAAATTTATGTGATTTGTATGTGCTAACAGCGCTTGCCTAAAATTGCACCGCNCATAATGTATTATGTCAGTAAAAAAA]

[+] EMBL BQ906571             [CGACTATAACTCGATGCTCCGGAAAGTGCGCCTGACCATCACCACATTCGTCTTCCTCTGCTAATACTCCCCCCTTTATAGTCACGAAATAAATCGTNAATTTTTGCCCAGTGACCCCACTGAGCTATATTTGGTGTTCTTTTGGGATAAACCTTGTNTTTNTNCACCCANNTCTGAAATGCTTTTCAATTACTTTCTCTACGAGTTCAAAATGACACGATTAAANACACTGTTAACTTTACCACAGATGGGAACGCTAAATTTATGTGATTTGTATGTGCTAACAGCGCTTGCCTAAAATTGCACCGCNCATAATGTATTATGTCAGTAAAAAAA]




>consensus_12528#3
CGACTATAACTCGATGCTCCGGAAAGTGCGCCTGACCATCACCACATTCGTCTTCCTCTG
CTAATACTCCCCCCTTTATAGTCACGAAATAAATCGTNAATTTTTGCCCAGTGACCCCAC
TGAGCTATATTTGGTGTTCTTTTGGGATAAACCTTGTNTTTNTNCACCCANNTCTGAAAT
GCTTTTCAATTACTTTCTCTACGAGTTCAAAATGACACGATTAAANACACTGTTAACTTT
ACCACAGATGGGAACGCTAAATTTATGTGATTTGTATGTGCTAACAGCGCTTGCCTAAAA
TTGCACCGCNCATAATGTATTATGTCAGTAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12528#0      GCTCGTCTCCACCGCGAGCGAAACCCAAAAAGGCAATGGCGACCGACGGCGACGCCCTCG 60
consensus_12528#1      ------------------------------------------------------------
consensus_12528#3      ------------------------------------------------------------
consensus_12528#2      ------------------------------------------------------------
                                                                                   

consensus_12528#0      AGTCCCAGGCGGCGGCGGCGGCCGAGGCGGCGCGGGAGCTGCGCGAGGCCGCCGCGTCCC 120
consensus_12528#1      ------------------------------------------------------------
consensus_12528#3      ------------------------------------------------------------
consensus_12528#2      ------------------------------------------------------------
                                                                                   

consensus_12528#0      TCGTCGCCCGCCGCTCCGCCGACGAGGACGCGCTCCGCCGCCGCGCCACGGCGCTCGACG 180
consensus_12528#1      ------------------------------------------------------------
consensus_12528#3      ------------------------------------------------------------
consensus_12528#2      ------------------------------------------------------------
                                                                                   

consensus_12528#0      CCGACCTCCGCCGCCTCCAGGCCTCCCTCTCCACCCTCGCCCCCACCACGCTCGACAAGG 240
consensus_12528#1      ------------------------------------------------------------
consensus_12528#3      ------------------------------------------------------------
consensus_12528#2      ------------------------------------------------------------
                                                                                   

consensus_12528#0      TTGAGGAGGAACTGGAGCGTGCCAGGGTAACAATCTCAGATAGTGACGTGGCTGCATTTC 300
consensus_12528#1      ------------------------------------------------------------
consensus_12528#3      ------------------------------------------------------------
consensus_12528#2      ------------------------------------------------------------
                                                                                   

consensus_12528#0      TCCCAAGCAAGCGGAATGGGAAGTTCCTCAAGACCTTTGTTGGCCCTGTAAATGTGCGGG 360
consensus_12528#1      ------------------------------------------------------------
consensus_12528#3      ------------------------------------------------------------
consensus_12528#2      ------------------------------------------------------------
                                                                                   

consensus_12528#0      TGGCGAGAAAAGAAGATAAGCTCAGAGTGAAGGACGAGTACAACAACTACAGGGATAGGG 420
consensus_12528#1      ------------------------------------------------------------
consensus_12528#3      ------------------------------------------------------------
consensus_12528#2      ------------------------------------------------------------
                                                                                   

consensus_12528#0      CTGCCTATATGTTTCTATTGTTCCCATCCATTCTCCTCCTACTTAGATGGTGGATATGGG 480
consensus_12528#1      ------------------------------------------------------------
consensus_12528#3      ------------------------------------------------------------
consensus_12528#2      ------------------------------------------------------------
                                                                                   

consensus_12528#0      ATGGATGCCTTCCAGCCTTGGCAGTTCAGATGTACCAGGCTTGGCTACTATTCCTTTACA 540
consensus_12528#1      ------------------------------------------------------------
consensus_12528#3      ------------------------------------------------------------
consensus_12528#2      ------------------------------------------------------------
                                                                                   

consensus_12528#0      CAAGTTTTGCTCTGCGGGAGAATGTGTTGATTGTAAATGGAAGTGATATTCGTCCTTGGT 600
consensus_12528#1      ------------------------------------------------------------
consensus_12528#3      ------------------------------------------------------------
consensus_12528#2      ------------------------------------------------------------
                                                                                   

consensus_12528#0      GGATATACCACCACTATTTAGCAATGCTAATGGCTCTCGTTAGCCTTACATGGGAGATAA 660
consensus_12528#1      ------------------------------------------------------------
consensus_12528#3      ------------------------------------------------------------
consensus_12528#2      ------------------------------------------------------------
                                                                                   

consensus_12528#0      AAGGACAGCCTGATTGTTCCAGCAAGCAGAGGGGGGTACAACTTTTCCTGCGGTGGGCAA 720
consensus_12528#1      ------------------------------------------------------------
consensus_12528#3      ------------------------------------------------------------
consensus_12528#2      ------------------------------------------------------------
                                                                                   

consensus_12528#0      TCATGCAAGGAATTGCAATGCATCTACAGAATAGGTACCAGCGTCAAAGATTGCGCACCC 780
consensus_12528#1      ------------------------------------------------------------
consensus_12528#3      ------------------------------------------------------------
consensus_12528#2      ------------------------------------------------------------
                                                                                   

consensus_12528#0      GGATAGCTCTAGGAAAGGCTAAAAGAATGGATGTTGTTGCTGGAGAA-ACAGCTGGTGTG 839
consensus_12528#1      ------------------------GAATGTTTGTTGC--CTGGAGAACACACCTGGT-TG 33
consensus_12528#3      ------------------------------------------------------------
consensus_12528#2      -------------ACTATTTAGCAATGCTAATGGCTCTCGTTAGCCTTACATGGGAGATA 47
                                                                                   

consensus_12528#0      GAAGGGCAGCTCTTGCTACTTTACCCGGTCCTTTTCACATTACAGGTTTT-CGAAGGATA 898
consensus_12528#1      NAAGGCCAGCTCTGGCTACTT-ACCCGTCCTGGTNCACATTACAGGTTTT-CGAAGGATA 91
consensus_12528#3      ------------------------------------------------------------
consensus_12528#2      AAAGGACAGCCTGATTGTTCCAGCAAGCAGAGGGGGGTACAACTTTTTTTGCGGAGGGCA 107
                                                                                   

consensus_12528#0      TGTTGGAGTATTACTTCTTAAGACG-GCTTTGCACGGGCTTGC--ATCGGAATGGCAGGT 955
consensus_12528#1      TGTTGGAGTATTACTTCTTAAGACG-GCTT-GCACGGGCTTGC--ATCGGAATGGCAGGT 147
consensus_12528#3      ------------------------------------------------------------
consensus_12528#2      GGCATGCCCGGAACTGCCCCGCCTGTACCGACCGCGGGCCCGGTGGCTGCCATCGGGGAC 167
                                                                                   

consensus_12528#0      TGTAGTTTGTGGGATCTTGCTGGTGGTAA---TGGCA-GTCGGCAACTTTGTCAACAC-G 1010
consensus_12528#1      TGTAGTTTGTGGGATCTTGCTGGTGGTAA---TGGCACGTCGGCAACTTTGTCAACACCG 204
consensus_12528#3      ------------------------------------------------------------
consensus_12528#2      CCCCGCCTCTCCTCTCGGGGGGATTAGAGGTCCGGCAACCCACGGAGCCGCTCGCACGCC 227
                                                                                   

consensus_12528#0      ATGGAGACTTTGATGTTAAAATTGAGGTTCAAAGCAAAAATGAAAAGAGCA--AAGAGC- 1067
consensus_12528#1      ATGGAGACTTTGATGTTAAAATTGAGGTTCCAAGCCAAAATGAAAAGAGCAC-AAGAGCC 263
consensus_12528#3      ----------CGAC-TATAACTCGATGCTCCGG---AAAGTGCGCCTGACC---ATCACC 43
consensus_12528#2      GCGGCGCTGGGGGCCGCGCGGCCGAAGCGGCCCGCGCAAGCGGAGCGGCCCCAGGGCGCT 287
                                  *           ** *          **  *       *        * 

consensus_12528#0      AGGCAGGATCTCAGTCGCCA-ACACCAAAATTGACAAAGT--GACCCAT--AATGGTGAC 1122
consensus_12528#1      AGGCAGGATCTCAGTCGCCA-ACACCAAAATTGACAAAGT--GACCCAT--AATGGTGAC 318
consensus_12528#3      ACATTCGTCTTCCTCTGCTA-ATACTCCCCCCTTTATAGT--CACGAAATAAATCGTNAA 100
consensus_12528#2      CGACCTCCAGTCGTCCGCGGCGTCCCGGCCTCCACGAGATCTGTCTCGCCCGCTGCTGCC 347
                                 **    **      *              *    *        *  *   

consensus_12528#0      TCCATGCTTGGAAACAGCGAATGCTGACACACCATCTCTCTTGTAAATCCCTTAATCCAT 1182
consensus_12528#1      TCCATGCTTGGAAACAGCGAATGCTGACACACCATCTCTCTTGTAAATCCCTTAATCCAT 378
consensus_12528#3      TTTTTGCCCAGTGACCCCA----CTGA---GCTATATTTGGTGT---TCTTTTGGGATAA 150
consensus_12528#2      CCGCCGCTCGGCACCCCGAGAGGGTGGG--CCAGTTTGCTCTGATGGCCAGCTCGTGTAG 405
                            **   *   *         **     *  * *    **     *   *     * 

consensus_12528#0      AAACTGTTTTGGCTGCCCATGATTTTGTGT-TTTGGTAATTGTTT--CACATTGAAGTTC 1239
consensus_12528#1      AAACTGTTTTGGCTGCCCATGATTTTGTGT-TTTGGTAATTGTTT--CACATTGAAGTTC 435
consensus_12528#3      ACCTTGTNTTTNTNCACCCANNTCTGAAATGCTTTTCAATTACTT--TCTCTACGAGTTC 208
consensus_12528#2      GCGACGCGCTGTACGCGCGT-ATCTGCCGCGATGGACCACCATCTGACTCACTCACGCGT 464
                            *   *       *    * *       *     *     *           *   

consensus_12528#0      ATATTCTACGGTCAATGCACGATTAAAAACACTGTTAACTTTACCACAGATGGGAACGCT 1299
consensus_12528#1      ATATTCTACGGTCAATGCACGATTAAAAACACTGTTAACTTTACCACAGATGGGAACGCT 495
consensus_12528#3      AAAATG----------ACACGATTAAANACACTGTTAACTTTACCACAGATGGGAACGCT 258
consensus_12528#2      ATCTTCCCTGAGTTGCGCGCGATTGTATTCACCA--GGCCAGGCAACT--CCGCCGTACT 520
                       *   *            * *****  *  ***      *    * **     *     **

consensus_12528#0      AAATTTATGTGATTTGTATGTGCTAACAGCGCTTGCCTAAAAAAAGGGA-AAAAAAAAAA 1358
consensus_12528#1      AAATTTATGTGATTTGTATGTGCTAACAGCGCTTGCCTAAAATTGCAGA-GAACAATAAT 554
consensus_12528#3      AAATTTATGTGATTTGTATGTGCTAACAGCGCTTGCCTAAAATTGCACC-GCNCA-TAAT 316
consensus_12528#2      TAGCCCGTGCTGCGCATCGCCGCTAGTCGTATTCGGCCGCGATACTTCCCGCGGACCTGC 580
                        *     **       *    ****   *   * * *    *            *     

consensus_12528#0      AAAAAAAAAAAAAAAAAAAAAAAA-----------AAAAAAAAAAAAAAAAAAAAAAAAA 1407
consensus_12528#1      GTATTATGTCAGTAGTCAGTAGATTCCGTGGCTCTAATTGCAGAGAGCTAGTAACATGCT 614
consensus_12528#3      GTATTATGTCAGTAAAAAAA---------------------------------------- 336
consensus_12528#2      CTACTATATCGACCACGCGTGGCCCACTGTCTCCTCACCCTCGGCGTTCGTGCC------ 634
                         *  *                                                      

consensus_12528#0      AAAAAAAAAAAAACCCCTTGTTTTC-------- 1432
consensus_12528#1      GCCCAATGAACAGTCCACAGCTCAGACCAAAAA 647
consensus_12528#3      ---------------------------------
consensus_12528#2      ---------------------------------