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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12542#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 654 fasta sequence
[CTCCTTTTGGCACAAATTCTCTCGAGAAGGAGAGCGAATATGCCGTCTCTGCGGCCGATCTTGCTCGCCGCCG-CCGCCGCCGTCGCCGTCGTGTCTCTGTGGCCGGCTGCCCGCGTGGTGGCCGACATCGATCCGTCGTCTGGGATGCCGTCGCCACCTGCGACCACCTCGCCGTTCCCGTTCTGCCCGACGACGCCGGCGGGGATCTCCACGCAGCCGTTTCCCTGGGCGGAGCCGTCTCCGACGACGACGACCACCATGTTCCCGCAGGATCCAGGGTTTCTTGCATCGGCGGCATGCCATGCG-AGGACGGCGGCGCTGGCATGGATTCCGGTGGTGTTTGTGTTTTCTGC-TTTCTTGGTGTTTTTGC-AGTGAATCGTACTCACTGCCATTGATGTTGT-ATGT-ATGAGTTGAATTC-AGATTCCATGATGTTTCTGAATATTGCAGCTGGTGTGATGCCATGTAACATGGTAATTTGATAGCCTTTGTATTGTATCAGATATATAGTTGCAAACACTATGTCAAAAGGAGTTCCTCTTTTTCTCTCTCGCTGTGCTAGTCACTCTGTTTCTTGTTCATGAGGAAAGGAAAGGAAAGATACATATGTACTTGATATTTGCACTAAAAAAAAATAAATCCAACCAGGAACTTAGT]
[+] EMBL AK059312 [CTCCTTTTGGCACAAATTCTCTCGAGAAGGAGAGCGAATATGCCGTCTCTGCGGCCGATCTTGCTCGCCGCCG CCGCCGCCGTCGCCGTCGTGTCTCTGTGGCCGGCTGCCCGCGTGGTGGCCGACATCGATCCGTCGTCTGGGATGCCGTCGCCACCTGCGACCACCTCGCCGTTCCCGTTCTGCCCGACGACGCCGGCGGGGATCTCCACGCAGCCGTTTCCCTGGGCGGAGCCGTCTCCGACGACGACGACCACCATGTTCCCGCAGGATCCAGGGTTTCTTGCATCGGCGGCATGCCATGCG AGGACGGCGGCGCTGGCATGGATTCCGGTGGTGTTTGTGTTTTCTGC TTTCTTGGTGTTTTTGC AGTGAATCGTACTCACTGCCATTGATGTTGT ATGT ATGAGTTGAATTC AGATTCCATGATGTTTCTGAATATTGCAGCTGGTGTGATGCCATGTAACATGGTAATTTGATAGCCTTTGTATTGTATCAGATATATAGT ]
[+] EMBL AU082204 [ TCTCGAGAAGGAGANCGAATATGCCGTCTCTGCGGCCGATCTTGCTCGCCGCCGCCCGCCGCCGTCGCCGTCGTGTCTCTGTNGCCGGCTGCCCGCGTGGTGGCCGACATCGATCCGTCGTCTGGGATGCCGTCGCNACCTGCGACCACCTCGCCGTTCCCGTTCTGCCCGACGACGCCGGCGGGGATCTCCACGCAGCCGTTTCCCTGGGCGGAGNCCTCTCCGACGACGACGACCACCATGTTCCCGCAGNATCCAGGGTTTCTTGCATCGGCGGCATGCCATGCG AGGNCGGCGGCGCTGGCATGGATTCCGGTGGTGTTTGTGTTTTCTGC TTTCTTGGTGTTTTTGC AGTGAATCGTACTCACTGCCATTGATGTTGT ATGT ATGAGTTGAATTC AGATTCCATGATGTTTCTGAATATTGCAGCTGGTGTGATGCCATGTAACATGGTAATTTGATAGCCTTTGTATTGTATCAGATATATAGTTGCAAACACTATGTCAAAAGGAGTTCCTCTTTTTCTCTCTCGCTGTGCTAGTCACTCTGTTTCTTGTTCATGAGGAAAGGAAAGGAAAGATACATATGTACTTGATATTTGCACTAAAAAAAAA ]
[+] EMBL AU082281 [ TCTCGAGAAGGAGAGCGAATATGCCGTCTCTGCGGCCGATCTTGCTCGCCGCCG CCGCCGCCGTCGCCGTCGTGTCTCTGTGGCCGGCTGCCCGCGTGGTGGCCGACATCGATCCGTCGTCTGGNATGCCGTCGCCACCTGCNACCACCTCGCCGTTCCCGTTCTGCCCGACGACGCCGGCGGGGATCTCCACGCAGCCGTTTCCCTGGGCGGAG CGTCTCCGACGACGACGACCACCATGTTCCCGCA GATCCAGGGTTTCTTGCATCGGCGGCATGCCATGCG AGGACGGCGGCGCTGGCATGGATTCCGGTGGTGTTTGTGTTTTCTGC TTTCTTGGTGTTTTTGC AGTTAATCGTACTCACTGCCATTGATGTNGT ATGT ATGAGTTGAATTC AGATTCC ]
[+] EMBL AU082203 [ TCGAGAAGGAGAGCGAATATNCCGTCTCTGCGGCCGATCTTGCTCGCCGCCG CCGCCGCCGTCGCCGTCGTGTCTCTGTGGCCGGCTGCCCGCGTGGTGGCCGACATCGATCCGTCGTCTGGGATGCCGTCGCCACCTGCGACCACCTCGCCGTTCCCGTTCTGCCCGACGACGCCGGCGGGGATCTCCACGCAGCCGTTTCCCTGGGCGGAGCGTTCTCCGACGACGACGACCACCATGTTCCCGCA GATCCAGGGTTTCTTGCATCGGCGGCATNCCATGCG AGGACGGCGGCGCTGGCATGGATTCCGGTGGTGTTTGTGTTTTCTGC TTTCTTGGTGTTTTTGC AGTGAATCGTACTCACTGCCATTG ]
[+] EMBL AU082285 [ AGAAGGAGAGCGAATATGCCGTCTCTGCGGCCGATCTTGCTCGCCGCCG CCGCCGCCGTCGCCGTCGTGTCTCTGTGGCCGGCTGCCCGCGTGGTGGCCGACATCGATCCGTCGTCTGGNATGCCGTCGCCACCTGCNACCACCTCGCCGTTCCCGTTCTGCCCGACGACGCCGGCGGGGATCTCCACGCAGCCGTTTCCCTGGGCGGAG CGTCTCCGACGACGACGACCACCATGTTCCCGCA GATCCAGGGTTTCTTGCATCGGCGGCATG CATGCGAAGGACGGCGGCGCTGGCATGGATTNCGGTGGTGTTTNTGTTTTCTGCTTTTCTTGGTGTTTTTNCAAGTTAATCGTANTCACTGCCATTGATGTTGTAATGTAATAAGTTGAATTT AAATTCCA ]
[+] EMBL OSS14421A [ AGCGAATATGCCGTCTCTGCGGCCGATCTTGCTCGCCGCCG CCGCCGNCGTCGCCGTCGTGTCTCTGTGGCCGGCTGCCCGCGTGGTGGCCGACATCGATCCGTCGTCTGGGATGCCGTCGCCACCTGCGACCACCTCGCCGTTCCCGTTCTGCCCGACGACGNCGGCGGGGATCTCCACGCAGCCGTTTCCCTGGGCGGAG CGTCTCCGACGACGACGACCACCATGTTCCCGCA GATCCAGGGTTTCTTGCATCGGCGGCATGCCATGCG AGGACGGCGGCGATGGCATGGATTCCGGTGGTGTTTGTGTTTTNTGC TTTNTTGGTGTTTTTGC AGTGAATCGTANTCACTGCCATTGATGTTGT ATGT ATGAGTTGAATTCAAGATTCCATGATGNTTCTGAATAATGCAGTTGGTGTGATG CATGTAACATGGTAA ]
[+] EMBL AK071433 [ AATATGCCGTCTCTGCGGCCGATCTTGCTCGCCGCCG CCGCCGCCGTCGCCGTCGTGTCTCTGTGGCCGGCTGCCCGCGTGGTGGCCGACATCGATCCGTCGTCTGGGATGCCGTCGCCACCTGCGACCACCTCGCCGTTCCCGTTCTGCCCGACGACGCCGGCGGGGATCTCCACGCAGCCGTTTCCCTGGGCGGAGCCGTCTCCGACGACGACGACCACCATGTTCCCGCAGGATCCAGGGTTTCTTGCATCGGCGGCATGCCATGCG AGGACGGCGGCGCTGGCATGGATTCCGGTGGTGTTTGTGTTTTCTGC TTTCTTGGTGTTTTTGC AGTGAATCGTACTCACTGCCATTGATGTTGT ATGT ATGAGTTGAATTC AGATTCCATGATGTTTCTGAATATTGCAGCTGGTGTGATGCCATGTAACATGGTAATTTGATAGCCTTTGTATTGTATCAGATATATAGTTGCAAACACTATGTCAAAAGGAGTTCCTCTTTTTCTCTCTCGCTGTGCTAGTCACTCTGTTTCTTGTTCATGAGGAAAGGAAAGGAAAGATACATATGTACTTGATATTTGCACTATTTCAGCTTAAATCCAACCAGGAACTTAGT]
[+] EMBL AU174370 [ TCTGTGGCCGGCTGCCCGCGTGGTGGCCGACATCGATCCGTCGTCTGGGATGCCGTCGCCACCTGCGACCACCTCGCCGTTCCCGTTCTGCCCGACGACGCCGGCGGGGATCTCCACGCAGCCGTTTCCCTGGGCGGAGCCGTCTCCGACGACGACGACCACCATGTTCCCGCAGGATCCAGGGTTTCTTGCATCGGCGGCATGCCATGCG AGGACGGCGGCGCTGGCATGGATTCCGGTGGTGTTTGTGTTTTCTGC TTTCTTGGTGTTTTTGC AGTGAATCGTACTCACTGCCATTGATGTTGT ATGT ATGAGTTGAATTC AGATTCCATGATGTTTNTGAATATTGCAGCTGGTGTGATGCCATGTAACATGGTAATTTGATAGCCTTTGTATTGTATCAGATATATAGTTGCAAACACTATGTCAAAAaaaaaa ]
[+] EMBL AU082272 [ nTGGGATGCCGTCGCCACCTGNGACCACCTCGCCGTTCCCGTTTTGCCCGACGACGCCGGCGGGGATNTCCACGCAGCCGTTTCCCTGGGCGGAGCC TCTCCGACGACGACGACCACCATNTTCCCGCAGGATCCAGGGTTTCTTGCATCGGCGGCATGCCATGCG AGGACGGCGGCGCTGGCATGGATTCCGGTGGTGTTTGTGTTTTCTGC TTTCTTGGTGTTTTTGC AGTGAATCGTACTCACTGCCATTGATGTTGT ATGT NTGAGTTGAATTC AGATTCCATGATGTTTCTGAATATTGCAGCTGGTGTGATGCCATGTAACATGGTAATTTGATAGCCTTTGTATTGTATCAGATATATAGTTGCAAACACTATGTCAAAAGG ]
consensusID : consensus_12542#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 204 fasta sequence
[TTGCAGTGAATCGTACTCCCTGCCATTGATGTTGTATGTATGAGTTGAATTCANATTCCATGATGTTTTTGAATATTGCAGCTGGTGTGATGCCATGTAACATGGTAATTTGATAGCCTTTGTATTGTATCANATANATAGTTGCAAACNCTATGTCAAAAGGAGTTCCTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU174423 [TTGCAGTGAATCGTACTCCCTGCCATTGATGTTGTATGTATGAGTTGAATTCANATTCCATGATGTTTTTGAATATTGCAGCTGGTGTGATGCCATGTAACATGGTAATTTGATAGCCTTTGTATTGTATCANATANATAGTTGCAAACNCTATGTCAAAAGGAGTTCCTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12542#0 CTCCTTTTGGCACAAATTCTCTCGAGAAGGAGAGCGAATATGCCGTCTCTGCGGCCGATC 60
consensus_12542#1 ------------------------------------------------------------
consensus_12542#0 TTGCTCGCCGCCGCCGCCGCCGTCGCCGTCGTGTCTCTGTGGCCGGCTGCCCGCGTGGTG 120
consensus_12542#1 ------------------------------------------------------------
consensus_12542#0 GCCGACATCGATCCGTCGTCTGGGATGCCGTCGCCACCTGCGACCACCTCGCCGTTCCCG 180
consensus_12542#1 ------------------------------------------------------------
consensus_12542#0 TTCTGCCCGACGACGCCGGCGGGGATCTCCACGCAGCCGTTTCCCTGGGCGGAGCCGTCT 240
consensus_12542#1 ------------------------------------------------------------
consensus_12542#0 CCGACGACGACGACCACCATGTTCCCGCAGGATCCAGGGTTTCTTGCATCGGCGGCATGC 300
consensus_12542#1 ------------------------------------------------------------
consensus_12542#0 CATGCGAGGACGGCGGCGCTGGCATGGATTCCGGTGGTGTTTGTGTTTTCTGCTTTCTTG 360
consensus_12542#1 ------------------------------------------------------------
consensus_12542#0 GTGTTTTTGCAGTGAATCGTACTCACTGCCATTGATGTTGTATGTATGAGTTGAATTCAG 420
consensus_12542#1 ------TTGCAGTGAATCGTACTCCCTGCCATTGATGTTGTATGTATGAGTTGAATTCAN 54
****************** **********************************
consensus_12542#0 ATTCCATGATGTTTCTGAATATTGCAGCTGGTGTGATGCCATGTAACATGGTAATTTGAT 480
consensus_12542#1 ATTCCATGATGTTTTTGAATATTGCAGCTGGTGTGATGCCATGTAACATGGTAATTTGAT 114
************** *********************************************
consensus_12542#0 AGCCTTTGTATTGTATCAGATATATAGTTGCAAACACTATGTCAAAAGGAGTTCCTCTTT 540
consensus_12542#1 AGCCTTTGTATTGTATCANATANATAGTTGCAAACNCTATGTCAAAAGGAGTTCCTTTT- 173
****************** *** ************ ******************** **
consensus_12542#0 TTCTCTCTCGCTGTGCTAGTCACTCTGTTTCTTGTTCATGAGGAAAGGAAAGGAAAGATA 600
consensus_12542#1 ------------AAAAAAAAAA---------------AAAAAAAAAAAAAAAAAAAAA-- 204
* * * * *** *** *** *
consensus_12542#0 CATATGTACTTGATATTTGCACTAAAAAAAAATAAATCCAACCAGGAACTTAGT 654
consensus_12542#1 ------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||