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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12553#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 857 fasta sequence
[GCGTTCGTTATCCTCTGCTGCTTCTCTGCGGTTTGAGCGAGCGAGGGAGGAAGAGGAGGGGAGGAGACGAAGATGGCCGGGGTGGCGGCGTTGCAGGGCGCGATGGCGTCCCTCTCCATCTCTGCGCCGGGGGCGGCGAGCACCAGCAGCTTCTGGGGCCACCCGCTCTCCACCTTCGCCGCCGCGCCGGCTGGGGTTAAATTTATGATCAAGACATGCCCAATTCAAATGAGGCTTAAGCGATGGGAGAGGAAGAAGTGTAAACCAAACAGTCTTCCTGTCCTGCACAAGATGCATGTTAGGATTGGCGATACAGTACAAGTCATTGCAGGCCGTGAG-AAAGGTAAAG-TTGGAGAAGTTACGC-GGC-TTTTTAAGCACAACAGCACTGTAAT-AGTGAAGGACTTGAACTTGAAGTCCAAGCACAAGAAAGGAACAGAAGATGAACCGGGTGAAATCGTCATGATTGAAGGCCCCATTCACAGCTCAAATGTGATGCTCTACTCAAAGGAAAAGAATGTGGCGAGTAGGGTTGGACACAAATTCCTTGAGGATGGAACGAAGGTTCGGTACCTGGTCAAGACTGGTGAAATAATTGACAGTGCTGAGAATTGGGTCAAGGTGTTCAAGGAAGGAAGTTCGGAGTGATCATGGTAGCAT-GGGAGTCCTGCACATTTTCTGAACTGCACTTTTTGTATGCCCAAATGAGTTGATGCTTTTCTAGATTCAGATTTCAGAGTCTTGTAAATTTCTATACAGTTGCCAACATTTTTTTGTATCCAATGACATGCTTGGCTTGTTAACCAGCTACTAGAATGGTTCAGCTACATTCGCTCATACAAATGATTTTGTAATGTTGT]
[+] EMBL AK070432 [GCGTTCGTTATCCTCTGCTGCTTCTCTGCGGTTTGAGCGAGCGAGGGAGGAAGAGGAGGGGAGGAGACGAAGATGGCCGGGGTGGCGGCGTTGCAGGGCGCGATGGCGTCCCTCTCCATCTCTGCGCCGGGGGCGGCGAGCACCAGCAGCTTCTGGGGCCACCCGCTCTCCACCTTCGCCGCCGCGCCGGCTGGGGTTAAATTTATGATCAAGACATGCCCAATTCAAATGAGGCTTAAGCGATGGGAGAGGAAGAAGTGTAAACCAAACAGTCTTCCTGTCCTGCACAAGATGCATGTTAGGATTGGCGATACAGTACAAGTCATTGCAGGCCGTGAG AAAGGTAAAG TTGGAGAAGTTACGC GGC TTTTTAAGCACAACAGCACTGTAAT AGTGAAGGACTTGAACTTGAAGTCCAAGCACAAGAAAGGAACAGAAGATGAACCGGGTGAAATCGTCATGATTGAAGGCCCCATCCACAGCTCAAATGTGATGCTCTACTCAAAGGAAAAGAATGTGGCGAGTAGGGTTGGACACAAATTCCTTGAGGATGGAACGAAGGTTCGGTACCTGGTCAAGACTGGTGAAATAATTGACAGTGCTGAGAATTGGGTCAAGGTGTTCAAGGAAGGAAGTTCGGAGTGATCATGGTAGCAT GGGAGTCCTGCACATTTTCTGAACTGCACTTTTTGTATGCCCAAATGAGTTGATGCTTTTCTAGATTCAGATTTCAGAGTCTTGTAAATTTCTATACAGTTGCCAACATTTTTTTGTATCCAATGACATGCTTGGCTTGTTAACCAGCTACTAGAATGGTTCAGCTACATTCGCTCATACAA ]
[+] EMBL CF333389 [GCGTTCGTTATCCTCTGCTGCTTCTCTGCGGTTTGAGCGAGCGAGGGAGGAAGAGGAGGGGAGGAGACGAAGATGGCCGGGGTGGCGGCGTTGCAGGGCGCGATGGCGTCCCTCTCCATCTCTGCGCCGGGGGCGGCGAGCACCAGCAGCTTCTGGGGCCACCCGCTCTCCACCTTCGCCGCCGCGCCGGCTGGGGTTAAATTTATGATCAAGACATGCCCAATTCAAATGAGGCTTAAGCGATGGGAGAGGAAGAAGTGTAAACCAAACAGTCTTCCTGTCCTGCACAAGATGCATGTTAGGATTGGCGATACAGTACAAGTCATTGCAGGCCGTGAG AAAGGTAAAG TTGGAGAAGTTACGC GGC TTTTTAAGCACAACAGCACTGTAAT AGTGAAGGACTTGAACTTGAAGTCCAAGCACAAGAAAGGAACAGAAGATGAACCGGGTGAAATCGTCATGATTGAAGGCCCCATTCACAGCTCAAATGTGATGCTCTACTCAAAGGAAAAGAA ]
[+] EMBL OSC0031 [ TCCTCTGCTGCTTCTCTGCGGTTTGAGCGAGCNAGGGAGGAAGAGGAGGGGAGGAGACGAAGATGGCCGGGGTGGCGGCGTTGCAGGGCGCGATGGCGTCCCTCTCCATCTCTGCGCCGGGGGCGGCGAGCACCAGCAGCTTCTGGGGCCACCCGCTCTCCACCTTCGCCGCCGCGCCGGCTGGGGTTAAATTTATGATCAAGACATGCCCAATTCAAATGAGGCTTAAGCGATGGGAGAGGAAGAAGTGTAAACCAAACAGTCTTCCTGTCCTGCACAAGATGCATGTTAGGATTGGCGATACAGTACAAGTCATTGCAGGCCGTTAGAAAAGGTAAAGTTTGGAGAAGTTACGCGGGCTTTTTTAAGCACAACAGCAC ]
[+] EMBL AK060024 [ TGCTGCTTCTCTGCGGTTTGAGCGAGCGAGGGAGGAAGAGGAGGGGAGGAGACGAAGATGGCCGGGGTGGCGGCGTTGCAGGGCGCGATGGCGTCCCTCTCCATCTCTGCGCCGGGGGCGGCGAGCACCAGCAGCTTCTGGGGCCACCCGCTCTCCACCTTCGCCGCCGCGCCGGCTGGGGTTAAATTTATGATCAAGACATGCCCAATTCAAATGAGGCTTAAGCGATGGGAGAGGAAGAAGTGTAAACCAAACAGTCTTCCTGTCCTGCACAAGATGCATGTTAGGATTGGCGATACAGTACAAGTCATTGCAGGCCGTGAG AAAGGTAAAG TTGGAGAAGTTACGC GGC TTTTTAAGCACAACAGCACTGTAAT AGTGAAGGACTTGAACTTGAAGTCCAAGCACAAGAAAGGAACAGAAGATGAACCGGGTGAAATCGTCATGATTGAAGGCCCCATTCACAGCTCAAATGTGATGCTCTACTCAAAGGAAAAGAATGTGGCGAGTAGGGTTGGACACAAATTCCTTGAGGATGGAACGAAGGTTCGGTACCTGGTCAAGACTGGTGAAATAATTGACAGTGCTGAGAATTGGGTCAAGGTGTTCAAGGAAGGAAGTTCGGAGTGATCATGGTAGCAT GGGAGTCCTGCACATTTTCTGAACTGCACTTTTTGTATGCCCAAATGAGTTGATGCTTTTCTAGATTCAGATTTCAGAGTCTTGTAAATTTCTATACAGTTGCCAACATTTTTTTGTATCCAATGACATGCTTGGCTTGTTAACCAGCTACTAGAATGGTTCAGCTACATTCGCTCATACAAATGATTTTGTAATGTTGT]
[+] EMBL CF326771 [ CTGCTTCTCTGCGGTTTGAGCGAGCGAGGGAGGAAGAGGAGGGGAGGAGACGAAGATGGCCGGGGTGGCGGCGTTGCAGGGCGCGATGGCGTCCCTCTCCATCTCTGCGCCGGGGGCGGCGAGCACCAGCAGCTTCTGGGGCCACCCGCTCTCCACCTTCGCCGCCGCGCCGGCTGGGGTTAAATTTATGATCAAGACATGCCCAATTCAAATGAGGCTTAAGCGATGGGAGAGGAAGAAGTGTAAACCAAACAGTCTTCCTGTCCTGCACAAGATGCATGTTAGGATTGGCGATACAGTACAAGTCATTGCAGGCCGTGAG AAAGGTAAAG TTGGAGAAGTTACGC GGC TTTTTAAGCACAACAGCACTGTAAT AGTGAAGGACTTGAACTTGAAGTCCAAGCACAAGAAAGGAACAGAAGATGAACCGGGTGAAATCGTCATGATTGAAGGCCCCATTCACAGCTCAAATGTGATGCTCTACTCAAAGGAAAAGAATGTGGCGAGTAGGGTTGGACACAAATTCCTTGAGGATGGAACGAAGGTTCGGTACCTGGTCAAGACTGGTGAAATAATTGACAGTGCTGAGAATTGGGTCAAGGTGTTCAAGGAAGGAAGTTCGGAGTGATCATGGTAGCATGGGGAGTCCTGCACATTTTCTG ]
[+] EMBL AU030053 [ TTCTCTGCGGTTTGAGCGAGCGAGGGAGGAAGAGGAGGGGAGGAGACGAAGATGGCCGGGGTGGCGGCGTTGCAGGGCGCGATGGCGTCCCTCTCCATCTCTGCGCCGGGGGCGGCGAGCACCAGCAGCTTCTGGGGCCACCCGCTCTCCACCTTCGCCGCCGCGCCGGCTGGGGTTAAATTTATGATCAAGACATGCCCAATTCAAATGAGGCTTAAGCGATGGGAGAGGAAGAAGTGTAAACCAAACAGTCTTCCTGTCCTGCACAAGATGCATGTTAGGATTGGCGATACAGTACAAGTCATTGCAGGCCGTGAG AAAGGTNAAG TTTGAAAAGTTACGC GG ]
[-] EMBL CF333390 [ CATGTTAGGATTGGCGATACAGTACAAGTCATTGCAGGCCGTGAG AAAGGTAAAG TTGGAGAAGTTACGC GGC TTTTTAAGCACAACAGCACTGTAATAAGTGAAGGACTTGAACTTGAAGTCCAAGCACAAGAAAGGAACAGAAGATGAACCGGGTGAAATCGTCATGATTGAAGGCCCCATTCACAGCTCAAATGTGATGCTCTACTCAAAGGAAAAGAATGTGGCGAGTAGGGTTGGACACAAATTCCTTGAGGATGGAACGAAGGTTCGGTACCTGGTCAAGACTGGTGAAATAATTGACAGTGCTGAGAATTGGGTCAAGGTGTTCAAGGAAGGAAGTTCGGAGTGATCATGGTAGCAT GGGAGTCCTGCACATTTTCTGAACTGCACTTTTTGTATGCCCAAATGAGTTGATGCTTTTCTAGATTCAGATTTCAGAGTCTTGTAAATTTCTATACAGTTGCCAACATTTTTTTGTATCCAATGACATGCTTGGCTTGTTAACCAGCTACTAGAATGGTTCAGCTACAaaaaaaa ]
[+] EMBL CF195997 [ AAG TTGGGGAAGTTACGC GGC TTTTTAAGCACAACAGCACTGTAAT AGTGAAGGACTTGAACTTGAAGTCCAAGCACAAGAAAGGAACAGAAGATGAACCGGGTGAAATCGTCATGATTGAAGGCCCCATTCACAGCTCAAATGTGATGCTCTACTCAAAGGAAAAGAATGTGGCGAGTAGGGTTGGACACAAATTCCTTGAGGATGGAACGAAGGTTCGGTACCTGGTCAAGACTGGTGAAATAATTGACAGTGCTGNNNATTGGGTCAAGGTGTTCAAGNANNNAAGTTCGGAGTGATCATGGTAGCAT GGGAGTCCTGCACATTTTCTGAACTGCACTNNNTGTATGCCCAAt ]
consensusID : consensus_12553#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 783 fasta sequence
[CTGAAATTTCCCTTTTTCCAATGCAGCTTAAGCGATGGGAGAGGAAGAAGTGTAAACCAAACAGTCTTCCTGTCCTGCACAAGATGCATGTTAGGATTGGCGATACAGTACAAGTCATTGCAGGCCGTGAGAAAGGTAAAGTTGGAGAAGTTACGCGGCTTTTTAAGCACAACAGCACTGTAATAGTGAAGGACTTGAACTTGAAGTCCAAGCACAAGAAAGGAACAGAAGATGAACCGGGTGAAATCGTCATGGTCAGCATTGTTTCTCTTGAAACTTCTTTCTGTGCTGCTTCTAGCTAGTGTCGTATATATAGTTTCAGATGCCTGATCGTTAACCTATGGTTGTTGGTGTTTTCTTTGATCAGATTGAAGGCCCCATT-CACAGCTCAAATGTGATGCTCTACT-CAAAGGAAAAGAATGTGGCGAGTAGGGTTGGACACAAATT-CC-TTGAGGATGGAACGAAGGTT-CGGTACCTGGTCAAGACTGGTGAAATAATTGACAGTGCTGAGAATTGGGTCAAGGTGTTCAAGGAAGGAAGTTCGGAGTGATCATGGTAGCATGGGAGTCCTGCACATTTTCTGAACTGCACTTTTTGTATGCCCAAATGAGTTGATGCTTTTCTAGATTCAGATTTCAGAGTCTTGTAAATTTCTATACAGTTGCCAACATTTTTTTGTATCCAATGACATGCTTGGCTTGTTAACCAGCTACTAGAATGGTTCAGCTACATTCGCTCATACAAATGATTTTGTAATGTTGTTGCTGTCCCCTGTCCTGAGCT]
[-] EMBL CB618606 [CTGAAATTTCCCTTTTTCCAATGCAGCTTAAGCGATGGGAGAGGAAGAAGTGTAAACCAAACAGTCTTCCTGTCCTGCACAAGATGCATGTTAGGATTGGCGATACAGTACAAGTCATTGCAGGCCGTGAGAAAGGTAAAGTTGGAGAAGTTACGCGGCTTTTTAAGCACAACAGCACTGTAATAGTGAAGGACTTGAACTTGAAGTCCAAGCACAAGAAAGGAACAGAAGATGAACCGGGTGAAATCGTCATGGTCAGCATTGTTTCTCTTGAAACTTCTTTCTGTGCTGCTTCTAGCTAGTGTCGTATATATAGTTTCAGATGCCTGATCGTTAACCTATGGTTGTTGGTGTTTTCTTTGATCAGATTGAAGGCCCCATT CACAGCTCAAATGTGATGCTCTACT CAAAGGAAAAGAATGTGGCGAGTAGGGTTGGACACAAATT CC TTGAGGATGGAACGAAGGTT CGGTACCTGGTCAAGACTGGTGAAATAATTGACAGTGCTGAGAATTGGGTCAAGGTGTTCAAGGAAGGAAGTTCGGAGTGATCATGGTAGCATGGGAGTCCTGCACATTTTCTGAACTGCACTTTTTGTATGCCCAAATGAGTTGATGCTTTTCTAGATTCAGATTTCAGAGTCTTGTAAATTTCTATACAGTTGCCAACATTTTTTTGTATCCAATGACATGCTTGGCTTGTTAACCAGCTACTAGAATGGTTCAGCTACATTCGCTCATACAAATGATTTTGTAATGTTGTTGCTGTCCCCTGTCCTGAGCT]
[+] EMBL AU101476 [ ATTGAAGGCCCCATTNCACAGCTCAAATGTGATGCTCTACTCCAAAGGAAAAGAATGTGGCGAGTAGGGTTGGACACAAATTNCCTTTGAGGATGGAACGAAGGTTNCGGTACCTGGTCAAGACTGGTGAAATAATTGACAGTGCTGAGAATTGGGTCAAGGTGTTCAAGGAAGGAAGTTCGGAGTGATCATGGTAGCATGGGAGTCCTGCACATTTTCTGAACTGCACTTTTTGTATGCCCAAATGAGTTGATGCTTTTCTAGATTCAGATTTCAGAGTCTTGTAAATTTCTATACAGTTGCCAACATTTTTTTGTATCCAATGACATGCTTGGCTTGTTAACCAGCTACTAGAATGGTTCAGCTACATTCGCTCATACAAATGATTTTGTAAaaaaaaaa ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12553#0 GCGTTCGTTATCCTCTGCTGCTTCTCTGCGGTTTGAGCGAGCGAGGGAGGAAGAGGAGGG 60
consensus_12553#1 ------------------------------------------------------------
consensus_12553#0 GAGGAGACGAAGATGGCCGGGGTGGCGGCGTTGCAGGGCGCGATGGCGTCCCTCTCCATC 120
consensus_12553#1 ------------------------------------------------------------
consensus_12553#0 TCTGCGCCGGGGGCGGCGAGCACCAGCAGCTTCTGGGGCCACCCGCTCTCCACCTTCGCC 180
consensus_12553#1 ------------------------------------------------------------
consensus_12553#0 GCCGCGCCGGCTGGGGTTAAATTTATGATCAAGACATGCCCAATTCAAATGAGGCTTAAG 240
consensus_12553#1 ----------------------------CTGAAATTTCCCTTTTTCCAATGCAGCTTAAG 32
* * * ** *** **** *******
consensus_12553#0 CGATGGGAGAGGAAGAAGTGTAAACCAAACAGTCTTCCTGTCCTGCACAAGATGCATGTT 300
consensus_12553#1 CGATGGGAGAGGAAGAAGTGTAAACCAAACAGTCTTCCTGTCCTGCACAAGATGCATGTT 92
************************************************************
consensus_12553#0 AGGATTGGCGATACAGTACAAGTCATTGCAGGCCGTGAGAAAGGTAAAGTTGGAGAAGTT 360
consensus_12553#1 AGGATTGGCGATACAGTACAAGTCATTGCAGGCCGTGAGAAAGGTAAAGTTGGAGAAGTT 152
************************************************************
consensus_12553#0 ACGCGGCTTTTTAAGCACAACAGCACTGTAATAGTGAAGGACTTGAACTTGAAGTCCAAG 420
consensus_12553#1 ACGCGGCTTTTTAAGCACAACAGCACTGTAATAGTGAAGGACTTGAACTTGAAGTCCAAG 212
************************************************************
consensus_12553#0 CACAAGAAAGGAACAGAAGATGAACCGGGTGAAATCGTCATG------------------ 462
consensus_12553#1 CACAAGAAAGGAACAGAAGATGAACCGGGTGAAATCGTCATGGTCAGCATTGTTTCTCTT 272
******************************************
consensus_12553#0 ------------------------------------------------------------
consensus_12553#1 GAAACTTCTTTCTGTGCTGCTTCTAGCTAGTGTCGTATATATAGTTTCAGATGCCTGATC 332
consensus_12553#0 -----------------------------------ATTGAAGGCCCCATTCACAGCTCAA 487
consensus_12553#1 GTTAACCTATGGTTGTTGGTGTTTTCTTTGATCAGATTGAAGGCCCCATTCACAGCTCAA 392
*************************
consensus_12553#0 ATGTGATGCTCTACTCAAAGGAAAAGAATGTGGCGAGTAGGGTTGGACACAAATTCCTTG 547
consensus_12553#1 ATGTGATGCTCTACTCAAAGGAAAAGAATGTGGCGAGTAGGGTTGGACACAAATTCCTTG 452
************************************************************
consensus_12553#0 AGGATGGAACGAAGGTTCGGTACCTGGTCAAGACTGGTGAAATAATTGACAGTGCTGAGA 607
consensus_12553#1 AGGATGGAACGAAGGTTCGGTACCTGGTCAAGACTGGTGAAATAATTGACAGTGCTGAGA 512
************************************************************
consensus_12553#0 ATTGGGTCAAGGTGTTCAAGGAAGGAAGTTCGGAGTGATCATGGTAGCATGGGAGTCCTG 667
consensus_12553#1 ATTGGGTCAAGGTGTTCAAGGAAGGAAGTTCGGAGTGATCATGGTAGCATGGGAGTCCTG 572
************************************************************
consensus_12553#0 CACATTTTCTGAACTGCACTTTTTGTATGCCCAAATGAGTTGATGCTTTTCTAGATTCAG 727
consensus_12553#1 CACATTTTCTGAACTGCACTTTTTGTATGCCCAAATGAGTTGATGCTTTTCTAGATTCAG 632
************************************************************
consensus_12553#0 ATTTCAGAGTCTTGTAAATTTCTATACAGTTGCCAACATTTTTTTGTATCCAATGACATG 787
consensus_12553#1 ATTTCAGAGTCTTGTAAATTTCTATACAGTTGCCAACATTTTTTTGTATCCAATGACATG 692
************************************************************
consensus_12553#0 CTTGGCTTGTTAACCAGCTACTAGAATGGTTCAGCTACATTCGCTCATACAAATGATTTT 847
consensus_12553#1 CTTGGCTTGTTAACCAGCTACTAGAATGGTTCAGCTACATTCGCTCATACAAATGATTTT 752
************************************************************
consensus_12553#0 GTAATGTTGT--------------------- 857
consensus_12553#1 GTAATGTTGTTGCTGTCCCCTGTCCTGAGCT 783
**********
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||