Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 12555 cluster # 12555       Sequences # 10       consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12555#0 length = 1382 sequences # 10  
consensusID : consensus_12555#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 1382
fasta sequence 
                              [TCGCCCAACTCCCAAAACCCTAGAACCGCGCCGCCACAATGCAGGCCGCCGCCGCCGCCGTCCACCGCCCGCACCTCCTCGGC-GCCTACCCCGGC-GGTGGCC-GC-GC-GCGCCGCCCGTCGTCCACCGTGCGGATGGC-GCTTCGGGAGGACGGGCCGTCGGTGGCGATCGTGGGCGCGACGGGCGCCGTCGGCCAGGAGTTCCTCCGCGTCATCTCCTCCCGGGGCTTCCCCTACCGGAGCCTCCGCCTCCTCGCCAGCGAGCGCTCCGCGGGGAAGCGCCTCCCGTTCGAGGGCCAGGAGTACACCGTCCAGGACCTCGCCGCGCCGGGCGCGTTCGACG-GGGTGGACATCGCGCTCTTCAGCGCCGGC-GGCGGGGTCAGCCGCGCCCACGCTCCC-GCGGCCGTCGCCAGCGGCGCCGTCGTCGTGGACAACAGCTCCGCCTTCCGGATGGA-CCCCGAGGTG-CCGCTCGTCATCCCCGAGGTCAATCCCGAGGCCATGGCGCACGTCCGGCTGGGAAAGGGGGCTATTGTGGCCAACCCGAACTGTTCCACCATCATCTGCCTCATGGCTGCCACACCTCTGCACCGCCACGCCAAGGTGGTAAGGATGGTTGTCAGCACTTACCAAGCAGCAAGTGGTGCTGGGGCTGCGGCCATGGAAGAACTCAAACTTCAAACTCAAGAGGTCTTGGCGGGGAAAGCACCAACATGCAACATTTTCAGTCAGCAGTATGCTTTTAATATATTTTCACATAATGCACCAATTGTTGAAAATGGGTACAATGAGGAGGAGATGAAGATGGTG-AAGGAGACCAG-AAAAATC-TGGAATGATAAAGATGTGAAGGTAACTGCAACCTGCATACGAGTTCCTGTGATGCGTGCACATGCTGAAAGTGTGAATCTACAGTTTGAAAAGCCACTTGATGAGGATACTGCAAGGGAAATCTTGAGGGCAGCTGAAGGTGTTACCATTATTGATGACCGTGCTTCCAATCGCTTCCCCACACCTCTTGAGGTATCGGATAAAGATGATGTAGCAGTGGGTAGAATTCGTCAGGATTTGTCGC-AAGATGATAACAAAGGGCTGGACATATTTGTTTGTGGAGATCAAATACGTAAAGGTGCTGCACTCAATGCTGTGCAGATTGCTGAAATGCTACTCAAGTGATTTTCTTTTCTGTACCTTTCTCTCCTTGCCCCTCTTTGCTCTAGTCATTGTTTGACGGATGTACTCTGGTTAGTATGAGATCAATTTTGATCATCTTTTGTAATCTATATTCCTAGTGAAATAAATGTAAAACGGTTTTGCTCTATCTTCTGCACAAGTGTAGAAGAAATCTGAAATTGGGAAATTGGAGTGTGGCCCTTGTTCAAAAAAAAAAAA]

[+] EMBL AK060701             [TCGCCCAACTCCCAAAACCCTAGAACCGCGCCGCCACAATGCAGGCCGCCGCCGCCGCCGTCCACCGCCCGCACCTCCTCGGC GCCTACCCCGGC GGTGGCC GC GC GCGCCGCCCGTCGTCCACCGTGCGGATGGC GCTTCGGGAGGACGGGCCGTCGGTGGCGATCGTGGGCGCGACGGGCGCCGTCGGCCAGGAGTTCCTCCGCGTCATCTCCTCCCGGGGCTTCCCCTACCGGAGCCTCCGCCTCCTCGCCAGCGAGCGCTCCGCGGGGAAGCGCCTCCCGTTCGAGGGCCAGGAGTACACCGTCCAGGACCTCGCCGCGCCGGGCGCGTTCGACG GGGTGGACATCGCGCTCTTCAGCGCCGGC GGCGGGGTCAGCCGCGCCCACGCTCCC GCGGCCGTCGCCAGCGGCGCCGTCGTCGTGGACAACAGCTCCGCCTTCCGGATGGA CCCCGAGGTG CCGCTCGTCATCCCCGAGGTCAATCCCGAGGCCATGGCGCACGTCCGGCTGGGAAAGGGGGCTATTGTGGCCAACCCGAACTGTTCCACCATCATCTGCCTCATGGCTGCCACACCTCTGCACCGCCACGCCAAGGTGGTAAGGATGGTTGTCAGCACTTACCAAGCAGCAAGTGGTGCTGGGGCTGCGGCCATGGAAGAACTCAAACTTCAAACTCAAGAGGTCTTGGCGGGGAAAGCACCAACATGCAACATTTTCAGTCAGCAGTATGCTTTTAATATATTTTCACATAATGCACCAATTGTTGAAAATGGGTACAATGAGGAGGAGATGAAGATGGTG AAGGAGACCAG AAAAATC TGGAATGATAAAGATGTGAAGGTAACTGCAACCTGCATACGAGTTCCTGTGATGCGTGCACATGCTGAAAGTGTGAATCTACAGTTTGAAAAGCCACTTGATGAGGATACTGCAAGGGAAATCTTGAGGGCAGCTGAAGGTGTTACCATTATTGATGACCGTGCTTCCAATCGCTTCCCCACACCTCTTGAGGTATCGGATAAAGATGATGTAGCAGTGGGTAGAATTCGTCAGGATTTGTCGC AAGATGGTAACAAAGGGCTGGACATATTTGTTTGTGGAGATCAAATACGTAAAGGTGCTGCACTCAATGCTGTGCAGATTGCTGAAATGCTACTCAAGTGATTTTCTTTTCTGTACCTTTCTCTCCTTGCCCCTCTTTGCTCTAGTCATTGTTTGACGGATGTACTCTGGTTAGTATGAGATCAATTTTGATCATCTTTTGTAATCTATATTCCTAGTGAAATAAATGTAAAACGGTTTTGCTCTATCTTCTGCACAAGTGTAGAAGAAATCTGAAATTGGGAAATTGGAGTGTGGCCC                  ]
[+] EMBL AU166310             [          CCCAAAACCCTAGAACCGNGCCGCCACAATGCAGGCCGCCGCCGCCGCCGTCCACCGCCCGCACCTCCTCGGCAGCCTACCCCGGCAGGTGGCC GCAGC GCGCCGCCCGTCGTCCACCGTGCGGATGGC GCTTCGGGAGGACGGGCCGTCGGTGGCGATCGTGGGCGCGACGGGCGCCGTCGGCCAGGAGTTCCTCCGAGTCATCTCCTCCCGGGGCTTCCCCTACCGGAGCCTCCGCCTCCTCGCCAGCGAGCGCTCCGCGGGGAAGCGCCTCCCGTTCGAGGGCCAGGAGTACACCGTCCAGGACCTCGCCGCGCCGGGCGCGTTCGACGNGGGTGGACATCGCGCTCTTCAGCGCCGGCGGGCGGGGTCAGCCGCGCCCACGCTCCC GGGGg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AU076192             [                    TAGAACCGCGCCGCCACAATGCAGGCCGCCGCCGCCGCCGTCCACNGCCCGCACNTCCTCGGC GCCTACCCCGGC GGTGGCC GC GC GCGCCGCCCGTCGTCCACCGTGCGGATGGC GCTTCGGGAGGACGGGCCGTCGGTGGCGANCNTGGGCGCGACGGGCG CGTCGGCCAGGAGTTCCTCCGCGTCATCTCCTCCCGGGGCTTCCCCTACCGGAGCCTCCGCCTCCTCNCCAGCGAGCGCTCCGGGNGGAAGCGCCTCCCGTTCGANGG CAGGAGTA AACGTCCA GACCTCGCCGCGCCGGGCGGTTTCGACG GGGTGGACAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AU067968             [                            CGCCGCCACAATGCAGGCCGCCGNCGNCGCCGTCCACCGCCCGCACCTCCTCGGC GCCTACCCCGGC GGTGGCC GC GC GCGCCGCCCGTNGTCCACCGTGCGGATGGC GCTTCGGGAGGACGGGCCGTCGGTGGCGATCGTNGGCGCGACGGGCG CGTCGGCCAGGAGTTCCTCCGCGTCATCTCCTCCCGGGGCTTCCCCTACCGGAGCCTCCGNCTCCTCGTCAGCGAGCGCTCCG GGGGAAGCGCCTTCCGTTCGAGGGCCAGGAGTACACCGTCCAGGACCTCGTCGNGTCGTGCG GTTCGACG GGGTGGACATCGTGNTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AU181225             [                                  CACAATGCAGGCCGCCGCCGCCGCCGTCCACCGCCCGCACCTCCTCGGCAGCCTACCCCGGCAGGTGGCCAGA GCAGCGCCGCCCGTCGTCCACCGTGCGGATGGCAGCTTCGGGAGGACGGGCCGTCGGTGGCGATCGTGGGCGCGACGGGCGCCGTCGGCCAGGAGTTCCTCCGCGTCATCTCCTCCCGGGGCTTCCCCTACCGGAGCCTCCGCCTCCTCGCCAGCGAGCGCTCCGCGGGGAAGCGCCTCCCGTTCGAGGGCCAGGAGTACACCGTCCAGGACCTCGCCGAGCCGGGCGCGTTCGACGAGGGTGGACATCGCGCTCTTCAGCGCCGGC GGCGGGGTCAGCCGCGCCCACGCTCCCNGCGGCCGTCGCCAGNGGCGCCGTCGTCGTGGACAACAGCTCCGCCTTCCGGATGGACCCCCGAGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AU181232             [                                          AGGCCGCCGCCGCCGCCGTCCACCGCCCGCACCTCCTCGGC GCCTACCCCGGC GGTGGCC GC GC GCGCCGCCCGTCGTCCACCGTGCGGATGGC GCTTCGGGAGGACGGGCCGTCGGTGGCGATCGTGGGCGCGACGGGCGCCGTCGGCCAGGAGTTCCTCCGCGTCATCTCCTCCCGGGGCTTCCCCTACCGGAGCCTCCGCCTCCTCGCCAGCGAGCGCTCCGCGGGGAAGCGCCTCCCGTTCGAGGGCCAGGAGTACACCGTCCAGGACCTCGCCGCGCCGGGCGCGTTCGACG GGGTGGACATCGCGCTCTTCAGCGCCGGC GGCGGGGTCAGCCGCGCCCACGCTCCC GCGGCCGTCGCCAGCGGCGCCGTCGTCGTGGACAACAGCTCCGCCTTCCGGATGGA CCCCGAGGTGCCCGCTCGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AU030255             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ATGNTGNANGNAGNCCAGAAAAAATCNTNGNATGATAAAGATGTGANGGTAACTGCAACCTGCATACGAGTCCCNGTGACGCGTGCACATGCTGAAAGTGTGAATCTACAGTTTGNNAAGCCACTTGATGAGGATACTGCAAGGGAAATCTTGAGGGCAGCTGAAGGTGTTNCCATTATTGATGACCGTGNTNCCAATCGCTTCCCNACACCTCTTGAGGTATCGGATAAAGNTGATGTAGCNGNGGGTAGAATTCGTCAGGATTTGTCGCAAAGATGATAACAANGGGCTGGACATATTTGTTTGTGGAGATCAAATACGTAAAGGTGCTGCACTCAATGCTGTGCAGATTGCTGAAATGCTACTCAAGTGATTTTCTTNTCTGTACCTTTCTCTCCTTGCCCCTCTTTGCTCTAGTCATTGTTTGACGGATGTACTCTGGTTAGTATGAGATCAATTTTGATCATCTTTTGTAATCTATATTCCTAGTGAAATAAATGTAAAACGGTTTTGCTCTATCTTCTGCACAAGTGTAGAAGAAATCTGAAATTGGGAAATTGGNGTGTGGCCNTTGTTCAAAAAAAAAAAA]
[+] EMBL AU181226             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      AAAGTGTGAATCTACAGTTTGAAAAGCCACTTGATGAGGATACTGCAAGGGAAATCTTGAGGGCAGCTGAAGGTGTTACCATTATTGATGACCGTGCTTCCAATCGCTTCCCCACACCTCTTGAGGTATCGGATAAAGATGATGTAGCAGTGGGTAGAATTCGTCAGGATTTGTCGC AAGATGATAACAAAGGGCTGGACATATTTGTTTGTGGAGATCAAATACGTAAAGGTGCTGCACTCAATGCTGTGCAGATTGCTGAAATGCTACTCAAGTGATTTTCTTTTCTGTACCTTTCTCTCCTTGCCCCTCTTTGCTCTAGTCATTGTTTGACGGATGTACTCTGGTTAGTATGAGATCAATTTTGATCATCTTTTGTAATCTATATTCCTAGTGAAATAAATGTAAAACGGTTTTGCTCTAaaaa                                                                   ]
[+] EMBL AU166311             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GCAGCTGAAGGTGTTACCATTATTGATGACCGTGCTTCCAATCGCTTCCCCACACCTCTTGAGGTATCGGATAAAGATGATGTAGCAGTGGGTAGAATTCGTCAGGATTTGTCGC AAGATGATAACAAAGGGCTGGACATATTTGTTTGTGGAGATCAAATACGTAAAGGTGCTGCACTCAATGCTGTGCAGATTGCTGAAATGCTACTCAAGTGATTTTCTTTTCTGTACCTTTCTCTCCTTGCCCCTCTTTGCTCTAGTCATTGTTTGACGGATGTACTCTGGTTAGTATGAGATCAATTTTGATCATCTTTTGTAATCTATATTCCTAGTGAAATAAATGTAAAACGGTTTTGCTCTATCTTCTGCACAAGTGTAGAAGAAATCTGAAATTGGGAAATTGGAGTGTGGCCCTTGTTCAAAAAA      ]
[+] EMBL AU076037             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CCCACACCTCTTGAGGTATCGGATAAAGATGATGTAGCAGTGGGTAGAATTCGTCAGGATTTGTCGC NAGATGATANCAAAGGGCTGGACATATTTGTTTGTGGAGATCAAATACGTAAAGGTGCTGCACTCAATGCTGTGCAGATTGCTGAAATGCTACTCAAGTGATTTTCTTNTCTGTACCTNTCTCNCCTTGCCCCTCTTTGCTCTAGTCATTGTTTGACGGATGTACTCTGGTTAGTATGAGATNAATTTTGATCATCTTTTGTAATCTATATTCCTAGTGAAATAAATGTAAAACGGTTTTGCTCTAaaaaa                                                                  ]




>consensus_12555#0
TCGCCCAACTCCCAAAACCCTAGAACCGCGCCGCCACAATGCAGGCCGCCGCCGCCGCCG
TCCACCGCCCGCACCTCCTCGGCGCCTACCCCGGCGGTGGCCGCGCGCGCCGCCCGTCGT
CCACCGTGCGGATGGCGCTTCGGGAGGACGGGCCGTCGGTGGCGATCGTGGGCGCGACGG
GCGCCGTCGGCCAGGAGTTCCTCCGCGTCATCTCCTCCCGGGGCTTCCCCTACCGGAGCC
TCCGCCTCCTCGCCAGCGAGCGCTCCGCGGGGAAGCGCCTCCCGTTCGAGGGCCAGGAGT
ACACCGTCCAGGACCTCGCCGCGCCGGGCGCGTTCGACGGGGTGGACATCGCGCTCTTCA
GCGCCGGCGGCGGGGTCAGCCGCGCCCACGCTCCCGCGGCCGTCGCCAGCGGCGCCGTCG
TCGTGGACAACAGCTCCGCCTTCCGGATGGACCCCGAGGTGCCGCTCGTCATCCCCGAGG
TCAATCCCGAGGCCATGGCGCACGTCCGGCTGGGAAAGGGGGCTATTGTGGCCAACCCGA
ACTGTTCCACCATCATCTGCCTCATGGCTGCCACACCTCTGCACCGCCACGCCAAGGTGG
TAAGGATGGTTGTCAGCACTTACCAAGCAGCAAGTGGTGCTGGGGCTGCGGCCATGGAAG
AACTCAAACTTCAAACTCAAGAGGTCTTGGCGGGGAAAGCACCAACATGCAACATTTTCA
GTCAGCAGTATGCTTTTAATATATTTTCACATAATGCACCAATTGTTGAAAATGGGTACA
ATGAGGAGGAGATGAAGATGGTGAAGGAGACCAGAAAAATCTGGAATGATAAAGATGTGA
AGGTAACTGCAACCTGCATACGAGTTCCTGTGATGCGTGCACATGCTGAAAGTGTGAATC
TACAGTTTGAAAAGCCACTTGATGAGGATACTGCAAGGGAAATCTTGAGGGCAGCTGAAG
GTGTTACCATTATTGATGACCGTGCTTCCAATCGCTTCCCCACACCTCTTGAGGTATCGG
ATAAAGATGATGTAGCAGTGGGTAGAATTCGTCAGGATTTGTCGCAAGATGATAACAAAG
GGCTGGACATATTTGTTTGTGGAGATCAAATACGTAAAGGTGCTGCACTCAATGCTGTGC
AGATTGCTGAAATGCTACTCAAGTGATTTTCTTTTCTGTACCTTTCTCTCCTTGCCCCTC
TTTGCTCTAGTCATTGTTTGACGGATGTACTCTGGTTAGTATGAGATCAATTTTGATCAT
CTTTTGTAATCTATATTCCTAGTGAAATAAATGTAAAACGGTTTTGCTCTATCTTCTGCA
CAAGTGTAGAAGAAATCTGAAATTGGGAAATTGGAGTGTGGCCCTTGTTCAAAAAAAAAA
AA

clustalw multiple alignements is not computed in this case
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)