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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12586#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1148 fasta sequence
[CATGGACTGAGGAGTAGAAACCCACTCCTCCCACCTCTCTCTCTCTCCTCCACACCACGCAGACGCGCACCAACCCGCCGGCATTCGCGTCCGGATGCTTTGCTTTGCCCGCCGCGATTCGATCCACGCCTGAGCGAGCGAGCGGGGCGAGCAACGCGCCCTTCCTTCCCTTGCCATGGCCTCTTCACCGGCGAGCAGCTACGACTGCTCCTTCAAGATCCTGCTCATCGGGGACTCGGCCGTCGGCAAGAGCAGTCTGCTCGTCAGCTTCGTCTCCGCCTCCCACATCGACGACGAAATCGCTCCCACCATAGGGGTTGACTTTAAAATCAAATTTCTCACTGTCAATGGGAAGAAACTGAAGCTAACAATATGGGACACTGCTGGCCAGGAAAGGTTTAGGGGAATCACAAGTTCTTACTACAGAGGTGCCCATGGCATCATTCTAGTGTATGATGTCACAAAGAGAGAAAGTTTCACAAATTTGGCTGATGTATGGGCCAAGGAAATAGAATTGCATTCGACAAATAAAGAGTGCATCAAAATGCTTGTCGGGAACAAGGTGGACAAGAATGAGGAAAGGATGGTGACAAGGGAAGAAGGTCTTGCCTTTGCCCAGGAATCTGGATGTCTTTTTCTTGAGAGCAGTGCCAAAACAAGAGAAAATGTGGAGAAATGCTTTGAAGAGCTTGCGTTAAAGATTCTTGAGGTACCAAGTCTCTTGGAGGAAGGTTCTTCAGTTGTCAAGAGGAACTCTCTGAAACAGAAGCACGAGAACAAAGCAAAAAATGGAGGATGCTGTCAGTAGTTCCGGTTGCTGTATGCGAGCTCATGATGCTTAGACCTAGCATGTTCTTGTGTACTGATGTAAATGATTTGTACCTAAATGCTTGTTGGTGTAGCTGATGCGAGTTAAGAAGGAAATAACCACACGAAGTTTTTGGTGCGAACACTGGGAATTGATTTGTACAAAAGAAAAAGTTCTCCCTTCTAACTTCCTTCAGGTAGCAGTTTGGTGTGCTGAATGTGCCAGGATCATGTCGACTAGTCTTGTTTTCTGGAAATGTACATGTAATGGGATCCTGACAATTTGTCTTGCATATGGTGGAAGTATATATCTGGTGCATAAAAATGAAAAAAAAAAAAAA]
[+] EMBL CF319740 [CATGGACTGAGGAGTAGAAACCCACTCCTCCCACCTCTCTCTCTCTCCTCCACACCACGCAGACGCGCACCAACCCGCCGGCATTCGCGTCCGGATGCTTTGCTTTGCCCGCCGCGATTCGATCCACGCCTGAGCGAGCGAGCGGGGCGAGCAACGCGCCCTTCCTTCCCTTGCCATGGCCTCTTCACCGGCGAGCAGCTACGACTGCTCCTTCAAGATCCTGCTCATCGGGGACTCGGCCGTCGGCAAGAGCAGTCTGCTCGTCAGCTTCGTCTCCGCCTCCCACATCGACGACGAAATCGCTCCCACCATAGGGGTTGACTTTAAAATCAAATTTCTCACTGTCAATGGGAAGAAACTGAAGCTAACAATATGGGACACTGCTGGCCAGGAAAGGTTTAGGGGAATCACAAGTTCTTACTACAGAGGTGCCCATGGCATCATTCTAGTGTATGATGTCACAAAGAGAGAAAGTTTCACAAATTTGGCTGATGTATGGGCCAAGGAAATAGAATTGCATTCGACAAATAAAGAGT ]
[+] EMBL CF276905 [ ctttattCCCACTCCTCCCACCTCTCTCTCTCTCCTCCACACCACGCAGACGCGCACCAACCCGCCGGCATTCGCGTCCGGATGCTTTGCTTTGCCCGCCGCGATTCGATCCACGCCTGAGCAAGCGAGCGGGGCGAGCAACGCGCCCTTCCTTCCCTTGCCATGGCCTCTTCACCGGCGAGCAGCTACGACTGCTCCTTCAAGATCCTGCTCATCGGGGACTCGGCCGTCGGCAAGAGCAGTCTGCTCGTCAGCTTCGTCTCCGCCTCCCACATCGACGACGAAATCGCTCCCACCATAGGGGTTGACTTTAAAATCAAATTTCTCACTGTCAATGGGAAGAAACTGAAGCTAACAATATGGGACACTGCTGGCCGGGAAAGGTTTAGGGGAATCACAAGTTCTTACTACAGAGGTGCCCATGGCATCATTCTAGTGTATGATGTCACAAAGAGAGAAAGTTTCACAAATTTGGCTGATGTATGGGCCAAGGAAATAGAATTGCATTCGACAAATAAAGAGT ]
[+] EMBL CF321553 [ CCCACTCCTCCCACCTCTCTCTCTCTCCTCCACACCACGCAGACGCGCACCAACCCGCCGGCATTCGCGTCCGGATGCTTTGCTTTGCCCGCCGCGATTCGATCCACGCCTGAGCGAGCGAGCGGGGCGAGCAACGCGCCCTTCCTTCCCTTGCCATGGCCTCTTCACCGGCGAGCAGCTACGACTGCTCCTTCAAGATCCTGCTCATCGGGGACTCGGCCGTCGGCAAGAGCAGTCTGCTCGTCAGCTTCGTCTCCGCCTCCCACATCGACGACGAAATCGCTCCCACCATAGGGGTTGACTTTAAAATCAAATTTCTCACTGTCAATGGGAAGAAACTGAAGCTAACAATATGGGACACTGCTGGCCAGGAAAGGTTTAGGGGAATCACAAGTTCTTACTACAGAGGTGCCCATGGCATCATTCTAGTGTATGATGTCACAAAGAGAAAAAGTTTCACAAATTTGGCTGATGTATGGGCCAAGGAAATAGAATTGCATTCGACAAATAAAGAGTGCATCAAAATGCTTGTCGGGAACAAGGTGGACAAGAATGAGGAAAGGA ]
[+] EMBL CF316823 [ CCACGCAGACGCGCACCAACCCGCCGGCATTCGCGTCCGGATGCTTTGCTTTGCCCGCCGCGATTCGATCCACGCCTGAGCGAGCGAGCGGGGCGAGCAACGCGCCCTTCCTTCCCTTGCCATGGCCTCTTCACCGGCGAGCAGCTACGACTGCTCCTTCAAGATCCTGCTCATCGGGGACTCGGCCGTCGGCAAGAGCAGTCT ]
[+] EMBL AK061250 [ AGACGCGCACCAACCCGCCGGCATTCGCGTCCGGATGCTTTGCTTTGCCCGCCGCGATTCGATCCACGCCTGAGCGAGCGAGCGGGGCGAGCAACGCGCCCTTCCTTCCCTTGCCATGGCCTCTTCACCGGCGAGCAGCTACGACTGCTCCTTCAAGATCCTGCTCATCGGGGACTCGGCCGTCGGCAAGAGCAGTCTGCTCGTCAGCTTCGTCTCCGCCTCCCACATCGACGACGAAATCGCTCCCACCATAGGGGTTGACTTTAAAATCAAATTTCTCACTGTCAATGGGAAGAAACTGAAGCTAACAATATGGGACACTGCTGGCCAGGAAAGGTTTAGGGGAATCACAAGTTCTTACTACAGAGGTGCCCATGGCATCATTCTAGTGTATGATGTCACAAAGAGAGAAAGTTTCACAAATTTGGCTGATGTATGGGCCAAGGAAATAGAATTGCATTCGACAAATAAAGAGTGCATCAAAATGCTTGTCGGGAACAAGGTGGACAAGAATGAGGAAAGGATGGTGACAAGGGAAGAAGGTCTTGCCTTTGCCCAGGAATCTGGATGTCTTTTTCTTGAGAGCAGTGCCAAAACAAGAGAAAATGTGGAGAAATGCTTTGAAGAGCTTGCGTTAAAGATTCTTGAGGTACCAAGTCTCTTGGAGGAAGGTTCTTCAGTTGTCAAGAGGAACTCTCTGAAACAGAAGCACGAGAACAAAGCAAAAAATGGAGGATGCTGTCAGTAGTTCCGGTTGCTGTATGCGAGCTCATGATGCTTAGACCTAGCATGTTCTTGTGTACTGATGTAAATGATTTGTACCTAAATGCTTGTTGGTGTAGCTGATGCGAGTTAAGAAGGAAATAACCACACGAAGTTTTTGGTGCGAACACTGGGAATTGATTTGTACAAAAGAAAAAGTTCTCCCTTCTAACTTCCTTCAGGTAGCAGTTTGGTGTGCTGAATGTGCCAGGATCATGTCGACTAGTCTTGTTTTCTGGAAATGTACATGTAATGGGATCCTGACAATTTGTCTTGCATATGGTGGAAGTATATATCTGGTG ]
[+] EMBL AK099130 [ ACCAACCCGCCGGCATTCGCGTCCGGATGCTTTGCTTTGCCCGCCGCGATTCGATCCACGCCTGAGCGAGCGAGCGGGGCGAGCAACGCGCCCTTCCTTCCCTTGCCATGGCCTCTTCACCGGCGAGCAGCTACGACTGCTCCTTCAAGATCCTGCTCATCGGGGACTCGGCCGTCGGCAAGAGCAGTCTGCTCGTCAGCTTCGTCTCCGCCTCCCACATCGACGACGAAATCGCTCCCACCATAGGGGTTGACTTTAAAATCAAATTTCTCACTGTCAATGGGAAGAAACTGAAGCTAACAATATGGGACACTGCTGGCCAGGAAAAGTTTAGGGGAATCACAAGTTCTTACTACAGAGGTGCCCATGGCATCATTCTAGTGTATGATGTCACAAAGAGAGAAAGTTTCACAAATTTGGCTGATGTATGGGCCAAGGAAATAGAATTGCATTCGACAAATAAAGAGTGCATCAAAATGCTTGTCGGGAACAAGGTGGACAAGAATGAGGAAAGGATGGTGACAAGGGAAGAAGGTCTTGCCTTTGCCCAGGGATCTGGATGTCTTTTTCTTGAGAGCAGTGCCAAAACAAGAGAAAATGTGGAGAAATGCTTTGAAGAGCTTGCGTTAAAGATTCTTGAGGTACCAAGTCTCTTGGAGGAAGGTTCTTCAGTTGTCAAGAGGAACTCTCTGAAACAGAAGCACGAGAACAAAGCAAAAAATGGAGGATGCTGTCAGTAGTTCCGGTTGCTGTATGCGAGCTCATGATGCTTAGACCTAGCATGTTCTTGTGTACTGATGTAAATGATTTGTACCTAAATGCTTGTTGGTGTAGCTGATGCGAGTTAAGAAGGAAATAACCACACGAAGTTTTTGGTGCGAACACTGGGAATTGATTTGTACAAAAGAAAAAGTTCTCCCTTCTAACTTCCTTCAGGTAGCAGTTTGGTGTGCTGAATGTGCCAGGATCATGTCGACTAGTCT ]
[-] EMBL CF319741 [ AAGAAACTGAAGCTAACAATATGGGACACTGCTGGCCAGGAAAGGTTTAGGGGAATCACAAGTTCTTACTACAGAGGTGCCCATGGCATCATTCTAGTGTATGATGTCACAAAGAGAGAAAGTTTCACAAATTTGGCTGATGTATGGGCCAAGGAAATAGAATTGCATTCGACAAATAAAGAGTGCATCAAAATGCTTGTCGGGAACAAGGTGGACAAGAATGAGGAAAGGATGGTGACAAGGGAAGAAGGTCTTGCCTTTGCCCAGGAATCTGGATGTCTTTTTCTTGCGAGCAGTGCCAAAACAAGAGAAAATGTGGAGAAATGCTTTGAAGAGCTTGCGTTAAAGATTCTTGAGGTACCAAGTCTCTTGGAGGAAGGTTCTTCAGTTGTCAAGAGGAACTCTCTGAAACAGAAGCACGAGAACAAAGCAAAAAATGGAGGATGCTGTCAGTAGTTCCGGTTGCTGTATGCGAGCTCATGATGCTTAGACCTAGCATGTTCTTGTGTACTGATGTAAATGATTTGTACCTAAATGCTTGTTGGTGTAGCTGATGCGAGTTAAGAAGGAAATAACCACACGAAGTTTTTGGTGCGAACACT ]
[-] EMBL CF316824 [ GCCAAAACAAGAGAAAATGTGGAGAAATGCTTTGAAGAGCTTGCGTTAAAGATTCTTGAGGTACCAAGTCTCCTGGAGGAAGGTTCTTCAGTTGTCAAGAGGAACTCTCTGAAACAGAAGCACGAGAACAAAGCAAAAAATGGAGGATGCTGTCAGTAGTTCCGGTTGCTGTATGCGAGCTCATGATGCTTAGACCTAGCATGTTCTTGTGTACTGATGTAAATGATTTGTACCTAAATGCTTGTTGGTGTAGCTGATGCGAGTTAAGAAGGAAATAACCACACGAAGTTTTTGGTGCGAACACTGGGAATTGATTTGTACAAAAGAAAAAGTTCTCCCTTCTAACTTCCTTCAGGTAGCAGTTTGGTGTGCTGAATGTGCCAGGATCATGTCGACTAGTCTTGTTTTCTGGAAATGTACATGTAATGGGATCCTGACAATTTGTCTTGCATATGGTGGAAGTATATATCTGGTGCATAAAAA ]
[-] EMBL CF321554 [ GCCAAAACAAGAGAAAATGTGGAGAAATGCTTTGAAGAGCTTGCGTTAAAGATTCTTGAGGTACCAAGTCTCTTGGAGGAAGGTTCTTCAGTTGTCAAGAGGAACTCTCTGAAACAGAAGCACGAGAACAAAGCAAAAAATGGAGGATGCTGTCAGTAGTTCCGGTTGCTGTATGCGAGCTCATGATGCTTAGACCTAGCATGTTCTTGTGTACTGATGTAAATGATTTGTACCTAAATGCTTGTTGGTGTAGCTGATGCGAGTTAAGAAGGAAATAACCACACGAAGTTTTTGGTGCGAACACTGGGAATTGATTTGTACAAAAGAAAAAGTTCTCCCTTCTAACTTCCTTCAGGTAGCAGTTTGGTGTGCTGAATGTGCCAGGATCATGTCGACTAGTCTTGTTTTCTGGAAATGTACATGTAATGGGATCCTGACAATTTGTCTTGCATATGGTGGAAGTATATATCTGGTGCATAATTCTGAAAAAAAAAAAAAA]
[-] EMBL CF276906 [ CCAAAACAAGAGAAAATGTGGAGAAATGCTTTGAAGAGCTTGCGTTAAAGATTCTTGAGGTACCAAGTCTCTTGGAGGAAGGTTCTTCAGTTGTCAAGAGGAACTCTCTGAAACAGAAGCACGAGAACAAAGCAAAAAATGGAGGATGCTGTCAGTAGTTCCGGTTGCTGTATGCGAGCTCATGATGCTTAGACCTAGCATGTTCTTGTGTACTGATGTAAATGATTTGTACCTAAATGCTTGTTGGTGTAGCTGATGCGAGTTAAGAAGGAAATAACCACACGAAGTTTTTGGTGCGAACACTGGGAATTGATTTGTACAAAAGAAAAAGTTCTCCCTTCTAACTTCCTTCAGGTAGCAGTTTGGTGTGCTGAATGTGCCAGGATCATGTCGACTAGTCTTGTTTTCTGGAAATGTACATGTAATGGGATCCTGACAATTTGTCTTGCATATGGTGGAAGTATATATCTGGTGCATAAAAAa ]
consensusID : consensus_12586#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 488 fasta sequence
[CACGAGAACAAAGCAAAAAATGGAGGATGCTGTCAGTAGTTCCGGTTGCTGTATGCGAGCTCATGATGCTTAGACCTAGCATGTTCTTGTGTACTGATGTAAATGATTTGTACCTAAATGCTTGTTGGTGTAGCTGATGCGAGTTAAGAAGGAAATAACCACACGAAGTTTTTGGTGCGAACACTGGGAATTGATTTGTACAAAAGAAAAAGTTCTCCCTTCTAACTTCCTTCAGGTAGCAGTTTGGTGTGCTGAACGTGCCAGGATCATGTCGACTAGTCTTGTTTTCTGGAAATGTACATGTAATGGGATCCTGACAATTTGTCTTGCATATGGTGGAAGTATATATCTGGTGCATAATTCTGAATGATCTGTGTACAAAAGAAAAGGCGTATATCAGGAGCATCTGGTGGAAGTGTCATTAACTTATCATGCAGGTAACAATTATTATCAACGAAGCTCTGTGACACTCTGTTAAACTGAAAAAA]
[-] EMBL CF316292 [CACGAGAACAAAGCAAAAAATGGAGGATGCTGTCAGTAGTTCCGGTTGCTGTATGCGAGCTCATGATGCTTAGACCTAGCATGTTCTTGTGTACTGATGTAAATGATTTGTACCTAAATGCTTGTTGGTGTAGCTGATGCGAGTTAAGAAGGAAATAACCACACGAAGTTTTTGGTGCGAACACTGGGAATTGATTTGTACAAAAGAAAAAGTTCTCCCTTCTAACTTCCTTCAGGTAGCAGTTTGGTGTGCTGAACGTGCCAGGATCATGTCGACTAGTCTTGTTTTCTGGAAATGTACATGTAATGGGATCCTGACAATTTGTCTTGCATATGGTGGAAGTATATATCTGGTGCATAATTCTGAATGATCTGTGTACAAAAGAAAAGGCGTATATCAGGAGCATCTGGTGGAAGTGTCATTAACTTATCATGCAGGTAACAATTATTATCAACGAAGCTCTGTGACACTCTGTTAAACTGAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12586#0 CATGGACTGAGGAGTAGAAACCCACTCCTCCCACCTCTCTCTCTCTCCTCCACACCACGC 60
consensus_12586#1 ------------------------------------------------------------
consensus_12586#0 AGACGCGCACCAACCCGCCGGCATTCGCGTCCGGATGCTTTGCTTTGCCCGCCGCGATTC 120
consensus_12586#1 ------------------------------------------------------------
consensus_12586#0 GATCCACGCCTGAGCGAGCGAGCGGGGCGAGCAACGCGCCCTTCCTTCCCTTGCCATGGC 180
consensus_12586#1 ------------------------------------------------------------
consensus_12586#0 CTCTTCACCGGCGAGCAGCTACGACTGCTCCTTCAAGATCCTGCTCATCGGGGACTCGGC 240
consensus_12586#1 ------------------------------------------------------------
consensus_12586#0 CGTCGGCAAGAGCAGTCTGCTCGTCAGCTTCGTCTCCGCCTCCCACATCGACGACGAAAT 300
consensus_12586#1 ------------------------------------------------------------
consensus_12586#0 CGCTCCCACCATAGGGGTTGACTTTAAAATCAAATTTCTCACTGTCAATGGGAAGAAACT 360
consensus_12586#1 ------------------------------------------------------------
consensus_12586#0 GAAGCTAACAATATGGGACACTGCTGGCCAGGAAAGGTTTAGGGGAATCACAAGTTCTTA 420
consensus_12586#1 ------------------------------------------------------------
consensus_12586#0 CTACAGAGGTGCCCATGGCATCATTCTAGTGTATGATGTCACAAAGAGAGAAAGTTTCAC 480
consensus_12586#1 ------------------------------------------------------------
consensus_12586#0 AAATTTGGCTGATGTATGGGCCAAGGAAATAGAATTGCATTCGACAAATAAAGAGTGCAT 540
consensus_12586#1 ------------------------------------------------------------
consensus_12586#0 CAAAATGCTTGTCGGGAACAAGGTGGACAAGAATGAGGAAAGGATGGTGACAAGGGAAGA 600
consensus_12586#1 ------------------------------------------------------------
consensus_12586#0 AGGTCTTGCCTTTGCCCAGGAATCTGGATGTCTTTTTCTTGAGAGCAGTGCCAAAACAAG 660
consensus_12586#1 ------------------------------------------------------------
consensus_12586#0 AGAAAATGTGGAGAAATGCTTTGAAGAGCTTGCGTTAAAGATTCTTGAGGTACCAAGTCT 720
consensus_12586#1 ------------------------------------------------------------
consensus_12586#0 CTTGGAGGAAGGTTCTTCAGTTGTCAAGAGGAACTCTCTGAAACAGAAGCACGAGAACAA 780
consensus_12586#1 -------------------------------------------------CACGAGAACAA 11
***********
consensus_12586#0 AGCAAAAAATGGAGGATGCTGTCAGTAGTTCCGGTTGCTGTATGCGAGCTCATGATGCTT 840
consensus_12586#1 AGCAAAAAATGGAGGATGCTGTCAGTAGTTCCGGTTGCTGTATGCGAGCTCATGATGCTT 71
************************************************************
consensus_12586#0 AGACCTAGCATGTTCTTGTGTACTGATGTAAATGATTTGTACCTAAATGCTTGTTGGTGT 900
consensus_12586#1 AGACCTAGCATGTTCTTGTGTACTGATGTAAATGATTTGTACCTAAATGCTTGTTGGTGT 131
************************************************************
consensus_12586#0 AGCTGATGCGAGTTAAGAAGGAAATAACCACACGAAGTTTTTGGTGCGAACACTGGGAAT 960
consensus_12586#1 AGCTGATGCGAGTTAAGAAGGAAATAACCACACGAAGTTTTTGGTGCGAACACTGGGAAT 191
************************************************************
consensus_12586#0 TGATTTGTACAAAAGAAAAAGTTCTCCCTTCTAACTTCCTTCAGGTAGCAGTTTGGTGTG 1020
consensus_12586#1 TGATTTGTACAAAAGAAAAAGTTCTCCCTTCTAACTTCCTTCAGGTAGCAGTTTGGTGTG 251
************************************************************
consensus_12586#0 CTGAATGTGCCAGGATCATGTCGACTAGTCTTGTTTTCTGGAAATGTACATGTAATGGGA 1080
consensus_12586#1 CTGAACGTGCCAGGATCATGTCGACTAGTCTTGTTTTCTGGAAATGTACATGTAATGGGA 311
***** ******************************************************
consensus_12586#0 TCCTGACAATTTGTCTTGCATATGGTGGAAGTATATATCTGGTGCATAAAAATGAAAAA- 1139
consensus_12586#1 TCCTGACAATTTGTCTTGCATATGGTGGAAGTATATATCTGGTGCATAATTCTGAATGAT 371
************************************************* **** *
consensus_12586#0 --------AAAAAAAAA------------------------------------------- 1148
consensus_12586#1 CTGTGTACAAAAGAAAAGGCGTATATCAGGAGCATCTGGTGGAAGTGTCATTAACTTATC 431
**** ****
consensus_12586#0 ---------------------------------------------------------
consensus_12586#1 ATGCAGGTAACAATTATTATCAACGAAGCTCTGTGACACTCTGTTAAACTGAAAAAA 488
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||