cluster # 12616

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 12616 cluster # 12616 Sequences # 11 consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12616#0 length = 1069 sequences # 4
consensus_12616#1 length = 873 sequences # 3

consensus_12616#2 length = 513 sequences # 1
consensus_12616#3 length = 479 sequences # 1
consensus_12616#4 length = 269 sequences # 2

consensusID : consensus_12616#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1069
fasta sequence

                              [AAGTCCAGCCAGGCCCAATTGTNAAATAGGTCTAATATTTTGCATCCTGCATGAAGAAAGCTGCAGACNGGCTTTTCANCTACAAGAAGGTGAGCTAACCAACTCCTTTGAAATTAATAACAAATTAAAACCAGAGCCANCTGACTGCTAATACCCTTGCTTTGGCCAACAACCANTGTCNANTTTGTCAACTAGTAATCAACTAATCTTGATCAGATCCTCCTATAAATTGACGAGAAACATGCANTATTCAAATCATCAAGCAGCTCCTGGTTTTGCAGCTCTAGCTNTTGCCTAGCAAGCTACTAGCCACTGCTAATCTTGCCATGGCTTCCAATTCGGTTCTCTTCGCCACGGTACTCGCCATGGCCGTCGTGCTCACCGGCAGCAGCAGCTGCCAAGCGGCTCGCCTCCT-CGCCGACGCAACACCGCCTGCCGTGCCGGCGGTCACCTTGCCACCGATGCCAGCCATTCCTGCCATCCCGGCGGCGACACTGCCGCCGATTCCGGCGGTGCCAACCGTGCCGAACGCCGCGTTGCCGCCCATGCCGGCCGTGCCCAAGGTGGCACTGCCGCCGATGCCCGCGGTGCCGGCTGTGCCCACCGTCCCCGCGGTGGCGCTGCCGCCGATGCCCGCGGTGCCCGCTGTGCCGACGGCGACGTTGCCGCCGATGCCGGCCGTGCCCGCCGTGCCGAACGCCGTGCTACCGCC-CATTCC-GGCCGTGCCGAAGGTGACGCTGCCGCCGATGCCGTCGATTCCGGCGGTGCCCAAGGTGACGCTGCCGCCGATGCCATCCGTGCCGATGCCGTTCTTGGCACCTCCTCCTTCGGCATAATTAAGGACGCTGCCAGTGCTTGTATATTTAGTGGGTCATTTGATTTGATTAATCTTTTGGTTATGTATTAATTTCCCCTGCTTGATTTGTTTTCTGTGTGTAAATGCATGTTGTATACTTGTATGCGAGTTAATTTTTTTTGTAATTTGTTCAAGCTGTACATGGAGTGCGCGGCTATAAGTATTTGTATATGGCATTTGTTTATATAAGTTCATTTTGGTTGGTTTAAAAAA]

[+] EMBL AA751973             [AAGTCCAGCCAGGCCCAATTGTNAAATAGGTCTAATATTTTGCATCCTGCATGAAGAAAGCTGCAGACNGGCTTTTCANCTACAAGAAGGTGAGCTAACCAACTCCTTTGAAATTAATAACAAATTAAAACCAGAGCCANCTGACTGCTAATACCCTTGCTTTGGCCAACAACCANTGTCNANTTTGTCAACTAGTAATCAACTAATCTTGATCAGATCCTCCTATAAATTGACGAGAAACATGCANTATTCAAATCATCAAGCAGCTCCTGGTTTTGCAGCTCTAGCTNTTNTTTATCAAGCTACTAGCCACTGCTAATCTTGCCATGGCTTCCAATTCGGTTCTCTTCGCCACGGTACTCGCCATGGCCGTCGTGCTCACCGGCANCAGCAGCTGCCAAGCGGCTCGCCTCCTCCGCCGACGCAACAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AK108897             [                                                                                                                                                                                                                                                                          CTCCTGGTTTTGCAGCTCTAGCTATTGCCTAGCAAGCTACTAGCCACTGCTAATCTTGCCATGGCTTCCAATTCGGTTCTCTTCGCCACGGTACTCGCCATGGCCGTCGTGCTCACCGGCAGCAGCAGCTGCCAAGCGGCTCGCCTCCT CGCCGACGCAACACCGCCTGCCGTGCCGGCGGTCACCTTGCCACCGATGCCAGCCATTCCTGCCATCCCGGCGGCGACACTGCCGCCGATTCCGGCGGTGCCAACCGTGCCGAACGCCGCGTTGCCGCCCATGCCGGCCGTGCCCAAGGTGGCACTGCCGCCGATGCCCGCGGTGCCGGCTGTGCCCACCGTCCCCGCGGTGGCGCTGCCGCCGATGCCCGCGGTGCCCGCTGTGCCGACGGCGACGTTGCCGCCGATGCCGGCCGTGCCCGCCGTGCCGAACGCCGTGCTACCGCC CATTCC GGCCGTGCCGAAGGTGACGCTGCCGCCGATGCCGTCGATTCCGGCGGTGCCCAAGGTGACGCTGCCGCCGATGCCATCCGTGCCGATGCCGTTCTTGGCACCTCCTCCTTCGGCATAATTAAGGACGCTGCCAGTGCTTGTATATTTAGTGGGTCATTTGATTTGATTAATCTTTTGGTTATGTATTAATTTCCCCTGCTTGATTTGTTTTCTGTGTGTAAATGCATGTTGTATACTTGTATGCGAGTTAATTTTTTTTGTAATTTGTTCAAGCTGTACATGGAGTGCGCGGCTATAAGTATTTGTATATGGCATTTGTTTATATAAGTTCATTTTGGTTGGTTTA     ]
[+] EMBL AU174355             [                                                                                                                                                                                                                                                                                                    GCCTAGCAAGCTACTAGCCACTGCTAATCTTGCCATGGCTTCCAATTCGGTTCTCTTCGCCACGGTACTCGCCATGGCCGTCGTGCTCACCGGCAGCAGCAGCTGCCAAGCGGCTCGCCTCCT CGCCGACGCAACACCGCCTGCCGTGCCGGCGGTCACCTTGCCACCGATGCCAGCCATTCCTGCCATCCCGGCGGCGACACTGCCGCCGATTCCGGCGGTGCCAACCGTGCCGAACGCCGCGTTGCCGCCCATGCCGGCCGTGCCCAAGGTGGCACTGCCGCCGATGCCCGCGGTGCCGGCTGTGCCCACCGTCCCCGCGGTGGCGCTGCCGCCGATGCCCGCGGTGCCCGCTGTGCCGACGGCGACGTTGCCGCCGATGCCGGCCGTGCCCGCCGTGCCGAACGCCGTGCT                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AU102018             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TACCGCCTNATTCCGGGCCNTGCCGAAGGTGACGCTGCCGCCGATGCCGTCGATTCCGGCGGTGCCCAAGGTGACG TGCCGCCGATGCCATCCGTGCCGATGCCGTTCTTGGCACCTCCT CTTCGGCATAATTAAGGACGCTGCCAGTGCTTGTATATTTAGTGGGTCATTTGATTTGATTAATCTTTTGGTTATGTATTAATTTCCCCTGCTTGATTTGTTTTCTGTGTGTAAATGCATGTTGTATACTTGTATGCGAGTTAATTTTTTTTGTAATTTGTTCAAGCTGTACATGGAGTGCGCGGCTATAAGTATTTGTATATGGCATTTGTTTATATAAGTTCATTTTGGTTGGTTTAAAAAA]




>consensus_12616#0
AAGTCCAGCCAGGCCCAATTGTNAAATAGGTCTAATATTTTGCATCCTGCATGAAGAAAG
CTGCAGACNGGCTTTTCANCTACAAGAAGGTGAGCTAACCAACTCCTTTGAAATTAATAA
CAAATTAAAACCAGAGCCANCTGACTGCTAATACCCTTGCTTTGGCCAACAACCANTGTC
NANTTTGTCAACTAGTAATCAACTAATCTTGATCAGATCCTCCTATAAATTGACGAGAAA
CATGCANTATTCAAATCATCAAGCAGCTCCTGGTTTTGCAGCTCTAGCTNTTGCCTAGCA
AGCTACTAGCCACTGCTAATCTTGCCATGGCTTCCAATTCGGTTCTCTTCGCCACGGTAC
TCGCCATGGCCGTCGTGCTCACCGGCAGCAGCAGCTGCCAAGCGGCTCGCCTCCTCGCCG
ACGCAACACCGCCTGCCGTGCCGGCGGTCACCTTGCCACCGATGCCAGCCATTCCTGCCA
TCCCGGCGGCGACACTGCCGCCGATTCCGGCGGTGCCAACCGTGCCGAACGCCGCGTTGC
CGCCCATGCCGGCCGTGCCCAAGGTGGCACTGCCGCCGATGCCCGCGGTGCCGGCTGTGC
CCACCGTCCCCGCGGTGGCGCTGCCGCCGATGCCCGCGGTGCCCGCTGTGCCGACGGCGA
CGTTGCCGCCGATGCCGGCCGTGCCCGCCGTGCCGAACGCCGTGCTACCGCCCATTCCGG
CCGTGCCGAAGGTGACGCTGCCGCCGATGCCGTCGATTCCGGCGGTGCCCAAGGTGACGC
TGCCGCCGATGCCATCCGTGCCGATGCCGTTCTTGGCACCTCCTCCTTCGGCATAATTAA
GGACGCTGCCAGTGCTTGTATATTTAGTGGGTCATTTGATTTGATTAATCTTTTGGTTAT
GTATTAATTTCCCCTGCTTGATTTGTTTTCTGTGTGTAAATGCATGTTGTATACTTGTAT
GCGAGTTAATTTTTTTTGTAATTTGTTCAAGCTGTACATGGAGTGCGCGGCTATAAGTAT
TTGTATATGGCATTTGTTTATATAAGTTCATTTTGGTTGGTTTAAAAAA

consensusID : consensus_12616#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 873
fasta sequence

                              [TGAGCAGCTCTCGTTTTGCAGTTCTAGCTAGCTAGCCACTGATCTCTCAGCCATGGCTTCCACTTCGGGTCTCCTCGCCACGGTGCTCGCCATGGCCGTCTTGCTCGCCGGCAGCAGCCGCAGCTGCCAAGCGGCGCGCCACCTCGCCGACGCAACACCTCCTGCCGCCGTGCCGGTGCCTACCGTGCCCGCTGTCACATTGCCACCGATGCCGGCCATTCCTGCCGTCCCGGCGGCGACACTGCCGCCGATGCCGGCGGTGCCAATCGTGCTGAACACCGCGTTGCCGCCCATGCCGGCCGTGCCGAAGGTGGCACTTCCGCCAATGCCCGCGGTGCCGGCTGTGCCTACCGTCCCCGCGGTGACCGTGCCGCCAATGCCCGCGGTGCCCGCTGTGCCGGCGGCCACGTTGCCACCGATGCCCGCGGTGCCTGCAGTGCCGGCGGCGAGCTTGCCGCCGATGCCAGCCATGCCCGCCGTGCCGAACG-CCGCGTTGCCGCCCATG-CCGG-CCGTGCCGAAGGTGACGCTGCCGCCGATGCCGTCGATG-CCGGCCGTGCCCAAGGTGACGCTGCCGCCGATGCCATCCGTGCCAATGCCGTTCTTGGCACCTCCTCCTTCGGCATAAGGACGCTGTCGATGCTTACACATTTATTGGGTCATTTGATTTGATATCAAGCTTTTGGTTATATATTTCCTCTGCTTGATTTGTTTTCTGTGAGTAAATGTATGTTGCATGCGAGTTTTTTTTTTTTTGGAATTTTTGTTCTAGCCGTGTTTGTATATGGAGTATGCTTGGCTATAAGTACTTGTATGTGGCATTTGTTTATAAAAGTTTCATTTTGGTTGGTTNATTTTAAAAAAAAAAAAAAAAAA]

[+] EMBL AK108823             [TGAGCAGCTCTCGTTTTGCAGTTCTAGCTAGCTAGCCACTGATCTCTCAGCCATGGCTTCCACTTCGGGTCTCCTCGCCACGGTGCTCGCCATGGCCGTCTTGCTCGCCGGCAGCAGCCGCAGCTGCCAAGCGGCGCGCCACCTCGCCGACGCAACACCTCCTGCCGCCGTGCCGGTGCCTACCGTGCCCGCTGTCACATTGCCACCGATGCCGGCCATTCCTGCCGTCCCGGCGGCGACACTGCCGCCGATGCCGGCGGTGCCAATCGTGCTGAACACCGCGTTGCCGCCCATGCCGGCCGTGCCGAAGGTGGCACTTCCGCCAATGCCCGCGGTGCCGGCTGTGCCTACCGTCCCCGCGGTGACCGTGCCGCCAATGCCCGCGGTGCCCGCTGTGCCGGCGGCCACGTTGCCACCGATGCCCGCGGTGCCTGCAGTGCCGGCGGCGAGCTTGCCGCCGATGCCAGCCATGCCCGCCGTGCCGAACG CCGCGTTGCCGCCCATG CCGG CCGTGCCGAAGGTGACGCTGCCGCCGATGCCGTCGATG CCGGCCGTGCCCAAGGTGACGCTGCCGCCGATGCCATCCGTGCCAATGCCGTTCTTGGCACCTCCTCCTTCGGCATAAGGACGCTGTCGATGCTTACACATTTATTGGGTCATTTGATTTGATATCAAGCTTTTGGTTATATATTTCCTCTGCTTGATTTGTTTTCTGTGAGTAAATGTATGTTGCATGCGAGTTTTTTTTTTTTTGGAATTTTTGTTCTAGCCGTGTTTGTATATGGAGTATGCTTGGCTATAAGTACTTGTATGTGGCATTTGTTTATAAAAGTTTCATT                                  ]
[+] EMBL AU031316             [                         AGCTAGCTAGCCACTGATCTCTCAGCCATGGCTTCCACTTCGGGTCTCCTCGCCACGGTGCTCGCCATGGCCGTCTTGCTCGCCGGCAGCAGCCGCAGCTGCCAAGCGGCGCGCCACNTCGCCGACGCAACACCTCCTGCCGCCGTGCCGGTGCCTACCGTGCCCGCTGTCACATTGCCACCGATGCCGGCCATTCCTGCCGTCCCGGCGGCGACACNNCCGCCGATGCCGGCGGTGCCAATCGTGCCGAACACCGCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AU031317             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ACGCCCGCGTTGCCGCCCATGCCCGGCCCGTGCCGANGGTGACGCTGCCGCCGATGCCGTCGATGCCCGGCCGTGCCCAAGGTGACGCTGCCGCCGATGCCATCCGTGCCAATGCCGTTCTTGGCACCTCCTCCTTCGGCATAAGGACGCTGTCGATGCTTACACATTTATTGGGTCATTTGATTTGATATCAAGCTTTTGGTTATATATTTCCTCTGCTTGATTTGTTTTCTGTGAGTAAATGTATGTTGCATGCGAGTTTTTTTTTTTTTGGAATTTTTGTTCTAGCCGTGTTTGTATATGGAGTATGCTTGGCTATAAGTACTTGTATGTGGCATTTGTTTATAAAAGTTTCATTTTGGTTGGTTNATTTTAAAAAAAAAAAAAAAAAA]




>consensus_12616#1
TGAGCAGCTCTCGTTTTGCAGTTCTAGCTAGCTAGCCACTGATCTCTCAGCCATGGCTTC
CACTTCGGGTCTCCTCGCCACGGTGCTCGCCATGGCCGTCTTGCTCGCCGGCAGCAGCCG
CAGCTGCCAAGCGGCGCGCCACCTCGCCGACGCAACACCTCCTGCCGCCGTGCCGGTGCC
TACCGTGCCCGCTGTCACATTGCCACCGATGCCGGCCATTCCTGCCGTCCCGGCGGCGAC
ACTGCCGCCGATGCCGGCGGTGCCAATCGTGCTGAACACCGCGTTGCCGCCCATGCCGGC
CGTGCCGAAGGTGGCACTTCCGCCAATGCCCGCGGTGCCGGCTGTGCCTACCGTCCCCGC
GGTGACCGTGCCGCCAATGCCCGCGGTGCCCGCTGTGCCGGCGGCCACGTTGCCACCGAT
GCCCGCGGTGCCTGCAGTGCCGGCGGCGAGCTTGCCGCCGATGCCAGCCATGCCCGCCGT
GCCGAACGCCGCGTTGCCGCCCATGCCGGCCGTGCCGAAGGTGACGCTGCCGCCGATGCC
GTCGATGCCGGCCGTGCCCAAGGTGACGCTGCCGCCGATGCCATCCGTGCCAATGCCGTT
CTTGGCACCTCCTCCTTCGGCATAAGGACGCTGTCGATGCTTACACATTTATTGGGTCAT
TTGATTTGATATCAAGCTTTTGGTTATATATTTCCTCTGCTTGATTTGTTTTCTGTGAGT
AAATGTATGTTGCATGCGAGTTTTTTTTTTTTTGGAATTTTTGTTCTAGCCGTGTTTGTA
TATGGAGTATGCTTGGCTATAAGTACTTGTATGTGGCATTTGTTTATAAAAGTTTCATTT
TGGTTGGTTNATTTTAAAAAAAAAAAAAAAAAA

consensusID : consensus_12616#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 513
fasta sequence

                              [CCGCGGTGCCGGCTGTGCCTACAGTCCCCGCGGTGCCCGCTGTGCCGGCGGCGAGCTTGCCGCCTATGCCGGCCGTGCCCGCCGTGCCGAACGCCGTGTTGCCGCCGATGCCGGCCGTGCCGAAGGTGACGCTGCCGCCGATGCCGTCGATGCCGGCCGTGCCCAAGGTGACGCTGCCGCCGATGCCATCCGTGCCGATGCCATTCTTGGCGCCACCTCCTTCGGCATGAGCATCAGCAGCATGCTACCTGCAGTGGTCTACATAAATTGTGTCATTTGATTGGGACTTTTGGTTATATATTTCTCCATGTTTGATTTGTTTTCTATATATGTGTGTAAATGCTTGTACATTTATGCGAGTTATTTGTGATTTGTTCTAGTTATTGGGCATCTTTGTATATTGAGGGCTCGGTTATAAGCCATGTAAAATTATATATATGGCATTTTTTATTATAAGTTTCTTTTGCTCCCCACACACAATGTTAAGGACGCTGCGCACCAATCTCACTTACG]

[+] EMBL CA755188             [CCGCGGTGCCGGCTGTGCCTACAGTCCCCGCGGTGCCCGCTGTGCCGGCGGCGAGCTTGCCGCCTATGCCGGCCGTGCCCGCCGTGCCGAACGCCGTGTTGCCGCCGATGCCGGCCGTGCCGAAGGTGACGCTGCCGCCGATGCCGTCGATGCCGGCCGTGCCCAAGGTGACGCTGCCGCCGATGCCATCCGTGCCGATGCCATTCTTGGCGCCACCTCCTTCGGCATGAGCATCAGCAGCATGCTACCTGCAGTGGTCTACATAAATTGTGTCATTTGATTGGGACTTTTGGTTATATATTTCTCCATGTTTGATTTGTTTTCTATATATGTGTGTAAATGCTTGTACATTTATGCGAGTTATTTGTGATTTGTTCTAGTTATTGGGCATCTTTGTATATTGAGGGCTCGGTTATAAGCCATGTAAAATTATATATATGGCATTTTTTATTATAAGTTTCTTTTGCTCCCCACACACAATGTTAAGGACGCTGCGCACCAATCTCACTTACG]




>consensus_12616#2
CCGCGGTGCCGGCTGTGCCTACAGTCCCCGCGGTGCCCGCTGTGCCGGCGGCGAGCTTGC
CGCCTATGCCGGCCGTGCCCGCCGTGCCGAACGCCGTGTTGCCGCCGATGCCGGCCGTGC
CGAAGGTGACGCTGCCGCCGATGCCGTCGATGCCGGCCGTGCCCAAGGTGACGCTGCCGC
CGATGCCATCCGTGCCGATGCCATTCTTGGCGCCACCTCCTTCGGCATGAGCATCAGCAG
CATGCTACCTGCAGTGGTCTACATAAATTGTGTCATTTGATTGGGACTTTTGGTTATATA
TTTCTCCATGTTTGATTTGTTTTCTATATATGTGTGTAAATGCTTGTACATTTATGCGAG
TTATTTGTGATTTGTTCTAGTTATTGGGCATCTTTGTATATTGAGGGCTCGGTTATAAGC
CATGTAAAATTATATATATGGCATTTTTTATTATAAGTTTCTTTTGCTCCCCACACACAA
TGTTAAGGACGCTGCGCACCAATCTCACTTACG

consensusID : consensus_12616#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 479
fasta sequence

                              [CCGCGGTGCCGGCTGTGCCTACAGTCCCCGCGGTGCCCGCTGTGCCGGCGGCGAGCTTGCCGCCTATGCCGGCCGTGCCCGCCGTGCCGAACGCCGTGTTGCCGCCGATGCCGGCCGTGCCGAAGGTGACGCTGCCGCCGATGCCGTCGATGCCGGCCGTGCCCAAGGTGACGCTGCCGCCGATGCCATCCGTGCCGATGCCATTCTTGGCGCCACCTCCTTCGGCATGAGCATCAGCAGCATGCTACCTGCAGTGGTCTACATAAATTGTGTCATTTGATTGGGACTTTTGGTTATATATTTCTCCATGTTTGATTTGTTTTCTATATATGTGTGTAAATGCTTGTACATTTATGCGAGTTATTTGTGATTTGTTCTAGTTATTGGGCATCTTTGTATATGGAGGGCTCGGTTATAAGCACATGTAAAATTATATATATGGCATTTTTATTATAAGTTTCTTTTGGTCAAAAAAAAAA]

[+] EMBL AU089814             [CCGCGGTGCCGGCTGTGCCTACAGTCCCCGCGGTGCCCGCTGTGCCGGCGGCGAGCTTGCCGCCTATGCCGGCCGTGCCCGCCGTGCCGAACGCCGTGTTGCCGCCGATGCCGGCCGTGCCGAAGGTGACGCTGCCGCCGATGCCGTCGATGCCGGCCGTGCCCAAGGTGACGCTGCCGCCGATGCCATCCGTGCCGATGCCATTCTTGGCGCCACCTCCTTCGGCATGAGCATCAGCAGCATGCTACCTGCAGTGGTCTACATAAATTGTGTCATTTGATTGGGACTTTTGGTTATATATTTCTCCATGTTTGATTTGTTTTCTATATATGTGTGTAAATGCTTGTACATTTATGCGAGTTATTTGTGATTTGTTCTAGTTATTGGGCATCTTTGTATATGGAGGGCTCGGTTATAAGCACATGTAAAATTATATATATGGCATTTTTATTATAAGTTTCTTTTGGTCAAAAAAAAAA]




>consensus_12616#3
CCGCGGTGCCGGCTGTGCCTACAGTCCCCGCGGTGCCCGCTGTGCCGGCGGCGAGCTTGC
CGCCTATGCCGGCCGTGCCCGCCGTGCCGAACGCCGTGTTGCCGCCGATGCCGGCCGTGC
CGAAGGTGACGCTGCCGCCGATGCCGTCGATGCCGGCCGTGCCCAAGGTGACGCTGCCGC
CGATGCCATCCGTGCCGATGCCATTCTTGGCGCCACCTCCTTCGGCATGAGCATCAGCAG
CATGCTACCTGCAGTGGTCTACATAAATTGTGTCATTTGATTGGGACTTTTGGTTATATA
TTTCTCCATGTTTGATTTGTTTTCTATATATGTGTGTAAATGCTTGTACATTTATGCGAG
TTATTTGTGATTTGTTCTAGTTATTGGGCATCTTTGTATATGGAGGGCTCGGTTATAAGC
ACATGTAAAATTATATATATGGCATTTTTATTATAAGTTTCTTTTGGTCAAAAAAAAAA

consensusID : consensus_12616#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 269
fasta sequence

                              [TTTTGCAGTGTTCTAACTATTGCCAAGCTAGCTAGCCACTGAGATCTCTCAGCCATGGCTTCCACTTCGGGTCTCCTCGCCACGGTGCTCGCCATGGCCGTCTTGCTCGCCGGCAGCAGCAGCAGCTGCCAAGCGGCGCGCCATCTCGCCGACGCAACACCTCCCGCTGCTGTGCCGGTGCCTACCGTGCCCGCTGTCACCTTGCCACCGATGCCGGCCATTCCTGNCGTCCCGNGGCGACCCTGNCGCGATTGCCGCGGTTGNCAACG]

[+] EMBL CF324769             [TTTTGCAGTGTTCTAACTATTGCCAAGCTAGCTAGCCACTGAGATCTCTCAGCCATGGCTTCCACTTCGGGTCTCCTCGCCACGGTGCTCGCCATGGCCGTCTTGCTCGCCGGCAGCAGCAGCAGCTGCCAAGCGGCGCGCCATCTCGCCGACGCAACACCTCCCGCTGCTGTGCCGGTGCCTACCGTGCCCGCTGTCACCTTGCCACCGATGCCGGCCATTC                                              ]
[+] EMBL OSC9661              [     CAGTGTTCTAACTATTGCCAAGCTAGCTAGCCACTGAGATCTCTCAGCCATGGCTTCCACTTCGGGTCTCCTCGCCACGGTGCTCGCCATGGCCGTCTTGCTCGCCGGCAGCAGCAGCAGCTGTCAAGCGGCGCGCCATCTCGCCGACGCAACACCTCCCGNTGCTGTGCCGGTGCCTACCGTGCCCGNTGTCACCTTGNCACCGATGNCGGCCATTCCTGNCGTCCCGNGGCGACCCTGNCGCGATTGCCGCGGTTGNCAACG]




>consensus_12616#4
TTTTGCAGTGTTCTAACTATTGCCAAGCTAGCTAGCCACTGAGATCTCTCAGCCATGGCT
TCCACTTCGGGTCTCCTCGCCACGGTGCTCGCCATGGCCGTCTTGCTCGCCGGCAGCAGC
AGCAGCTGCCAAGCGGCGCGCCATCTCGCCGACGCAACACCTCCCGCTGCTGTGCCGGTG
CCTACCGTGCCCGCTGTCACCTTGCCACCGATGCCGGCCATTCCTGNCGTCCCGNGGCGA
CCCTGNCGCGATTGCCGCGGTTGNCAACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12616#1      ------------------------------------------------------------
consensus_12616#4      ------------------------------------------------------------
consensus_12616#0      AAGTCCAGCCAGGCCCAATTGTNAAATAGGTCTAATATTTTGCATCCTGCATGAAGAAAG 60
consensus_12616#2      ------------------------------------------------------------
consensus_12616#3      ------------------------------------------------------------
                                                                                   

consensus_12616#1      ------------------------------------------------------------
consensus_12616#4      ------------------------------------------------------------
consensus_12616#0      CTGCAGACNGGCTTTTCANCTACAAGAAGGTGAGCTAACCAACTCCTTTGAAATTAATAA 120
consensus_12616#2      ------------------------------------------------------------
consensus_12616#3      ------------------------------------------------------------
                                                                                   

consensus_12616#1      ------------------------------------------------------------
consensus_12616#4      ------------------------------------------------------------
consensus_12616#0      CAAATTAAAACCAGAGCCANCTGACTGCTAATACCCTTGCTTTGGCCAACAACCANTGTC 180
consensus_12616#2      ------------------------------------------------------------
consensus_12616#3      ------------------------------------------------------------
                                                                                   

consensus_12616#1      ------------------------------------------------------------
consensus_12616#4      ------------------------------------------------------------
consensus_12616#0      NANTTTGTCAACTAGTAATCAACTAATCTTGATCAGATCCTCCTATAAATTGACGAGAAA 240
consensus_12616#2      ------------------------------------------------------------
consensus_12616#3      ------------------------------------------------------------
                                                                                   

consensus_12616#1      ----------------------------------TGAGCAGCTCTCGTTTTGCAGTT--- 23
consensus_12616#4      ---------------------------------TTTTGCAGTGTTCTAACTATTGC---- 23
consensus_12616#0      CATGCANTATTCAAATCATCAAGCAGCTCCTGGTTTTGCAGC--TCTAGCTNTTGCCTAG 298
consensus_12616#2      ------------------------------------------------------------
consensus_12616#3      ------------------------------------------------------------
                                                                                   

consensus_12616#1      CTAGCTAGCTAGCCACTG--ATCTCTCAGCCATGGCTTCCACTTCGGGTCTCCTCGCCAC 81
consensus_12616#4      CAAGCTAGCTAGCCACTGAGATCTCTCAGCCATGGCTTCCACTTCGGGTCTCCTCGCCAC 83
consensus_12616#0      CAAGCTA-CTAGCCACTGCTAATCTT--GCCATGGCTTCCAATTCGGTTCTCTTCGCCAC 355
consensus_12616#2      -----------------------------CCGCGGTGCCGGCTGTGCCTACAGTCCCCGC 31
consensus_12616#3      -----------------------------CCGCGGTGCCGGCTGTGCCTACAGTCCCCGC 31
                                                    **  **   *   *  *  *    ** ** *

consensus_12616#1      GGTGCTCGCCATGGC--CGTCTTGCTCGCCGGCAGCAGCCGCAGCTGCCAAGCGGCGCGC 139
consensus_12616#4      GGTGCTCGCCATGGC--CGTCTTGCTCGCCGGCAGCAGCAGCAGCTGCCAAGCGGCGCGC 141
consensus_12616#0      GGTACTCGCCATGGC--CGTCGTGCTCACCGGCAGCA---GCAGCTGCCAAGCGGCTCGC 410
consensus_12616#2      GGTGCCCGCTGTGCCGGCGGCGAGCTTGCCGCCTATGCCGGCCG-TGCC---CGCCGTGC 87
consensus_12616#3      GGTGCCCGCTGTGCCGGCGGCGAGCTTGCCGCCTATGCCGGCCG-TGCC---CGCCGTGC 87
                       *** * ***  ** *  ** *  ***  *** *       ** * ****   ** *  **

consensus_12616#1      CACCTCGCCGACGCAACACCTCCTGCCGCCGTGCCGGTGCCTACCGTGCCCGCTGTCACA 199
consensus_12616#4      CATCTCGCCGACGCAACACCTCCCGCTGCTGTGCCGGTGCCTACCGTGCCCGCTGTCACC 201
consensus_12616#0      CTCCTCGCCGACGCAACACC------------------GCCTGCCGTGCCGGCGGTCACC 452
consensus_12616#2      CG----AACGCCGTGTTGCC------------GCCGATGCCGGCCGTGCCGAAGGTGACG 131
consensus_12616#3      CG----AACGCCGTGTTGCC------------GCCGATGCCGGCCGTGCCGAAGGTGACG 131
                       *       ** **     **                  ***  *******    ** ** 

consensus_12616#1      TTGCCACCGATGCCGGCCATTCCTGCCGTCCCGGCGGCGACACTGCCGCCGATGCCGGCG 259
consensus_12616#4      TTGCCACCGATGCCGGCCATTCCTGNCGTCCCGN-GGCGACCCTGNCGCGATTGCCGCGG 260
consensus_12616#0      TTGCCACCGATGCCAGCCATTCCTGCCATCCCGGCGGCGACACTGCCGCCGATTCCGGCG 512
consensus_12616#2      CTGCCGCCGATGCCGTCGATGCCGGCCGTGCCCAAGGTGACGCTGCCGCCGATGCCATCC 191
consensus_12616#3      CTGCCGCCGATGCCGTCGATGCCGGCCGTGCCCAAGGTGACGCTGCCGCCGATGCCATCC 191
                        **** ********  * ** ** * * * **   ** *** *** ***   * **    

consensus_12616#1      GTGCCAATCGTGCTGAACACCGCGTTGCCGCCCATGCCGGCCGTGCCGAAGGTGGCACTT 319
consensus_12616#4      TTGNCAACG--------------------------------------------------- 269
consensus_12616#0      GTGCCAACCGTGCCGAACGCCGCGTTGCCGCCCATGCCGGCCGTGCCCAAGGTGGCACTG 572
consensus_12616#2      GTGCCGATGCCATTCTTGGCGCCACCTCCTTCGGCATGAGCATCAGC-AGCATGCTACCT 250
consensus_12616#3      GTGCCGATGCCATTCTTGGCGCCACCTCCTTCGGCATGAGCATCAGC-AGCATGCTACCT 250
                        ** * *                                                     

consensus_12616#1      CCGCCAATGCCCGCGGTGCCGGCTGTGCCTACCGTCCCCGCGGTGACCGTGCCGCCAATG 379
consensus_12616#4      ------------------------------------------------------------
consensus_12616#0      CCGCCGATGCCCGCGGTGCCGGCTGTGCCCACCGTCCCCGCGGTGGCGCTGCCGCCGATG 632
consensus_12616#2      GCAGTGGTCTACATAAATTGTGTCATTTGATTGGGACTTTTGGTTATATATTTCTCCATG 310
consensus_12616#3      GCAGTGGTCTACATAAATTGTGTCATTTGATTGGGACTTTTGGTTATATATTTCTCCATG 310
                                                                                   

consensus_12616#1      CCCGCGGTGCCCGCTGTGCCGGCGGCCACGTTGCCACCGATGCCCGCGGTGCCTGCAGTG 439
consensus_12616#4      ------------------------------------------------------------
consensus_12616#0      CCCGCGGTGCCCGCTGTGCCGACGGCGACGTTGCC------------------------- 667
consensus_12616#2      TTTGATTTGTTTTCTATATATGTGTGTAAATGCTTGTACATTTATGCGAGTTATTTGTGA 370
consensus_12616#3      TTTGATTTGTTTTCTATATATGTGTGTAAATGCTTGTACATTTATGCGAGTTATTTGTGA 370
                                                                                   

consensus_12616#1      CCGGCGGCGAGCTTGCCGCCGATGCCAGCCATGCCCGCCGTGCCGAACGC-CGCGTTGCC 498
consensus_12616#4      ------------------------------------------------------------
consensus_12616#0      -----------------GCCGATGCCGGCCGTGCCCGCCGTGCCGAACGC-CGTGCTACC 709
consensus_12616#2      TTTGTTCTAGTTATTGGGCATCTTTGTATATTGAGGGCTCGGTTATAAGC-CATGTAAAA 429
consensus_12616#3      TTTGTTCTAGTTATTGGGCATCTTTGTATATGGAGGGCTCGGTTATAAGCACATGTAAAA 430
                                                                                   

consensus_12616#1      GCCCATGCCGGCCGTGCCGAAGGTGACGCTGCCGCCGATGCCGTCGATGCCGGCCGTGCC 558
consensus_12616#4      ------------------------------------------------------------
consensus_12616#0      GCCCATTCCGGCCGTGCCGAAGGTGACGCTGCCGCCGATGCCGTCGATTCCGGCGGTGCC 769
consensus_12616#2      TTATATATATGGCATTTTTTATTATAAGTTTCTTTTGCTCCCCACACACAATGTTAAGGA 489
consensus_12616#3      TTATATATATGGCATTTTT-ATTATAAGTTTCTTTTGGTCAAAAAAAAAA---------- 479
                                                                                   

consensus_12616#1      CAAGGTGACGCTGCCGCCGATGCCATCCGTGCCAATGCCGTTCTTGGCACCTCCTCCTTC 618
consensus_12616#4      ------------------------------------------------------------
consensus_12616#0      CAAGGTGACGCTGCCGCCGATGCCATCCGTGCCGATGCCGTTCTTGGCACCTCCTCCTTC 829
consensus_12616#2      CGCTGCGCACCAATCTCACTTACG------------------------------------ 513
consensus_12616#3      ------------------------------------------------------------
                                                                                   

consensus_12616#1      GGCATAA----GGACGCTGTCGATGCTTACACATTTATTGGGTCATTTGATTTGAT--AT 672
consensus_12616#4      ------------------------------------------------------------
consensus_12616#0      GGCATAATTAAGGACGCTGCCAGTGCTTGTATATTTAGTGGGTCATTTGATTTGATTAAT 889
consensus_12616#2      ------------------------------------------------------------
consensus_12616#3      ------------------------------------------------------------
                                                                                   

consensus_12616#1      CAAGCTTTTGGTTATATATTTCCTCTGCTTGATTTGTTTTCTGTGAGTAAATGTATGTTG 732
consensus_12616#4      ------------------------------------------------------------
consensus_12616#0      CTTTTGGTTATGTATTAATTTCCCCTGCTTGATTTGTTTTCTGTGTGTAAATGCATGTTG 949
consensus_12616#2      ------------------------------------------------------------
consensus_12616#3      ------------------------------------------------------------
                                                                                   

consensus_12616#1      CATGCGAGTTTTTTTTTTTTTGGAATTTTTGTTCTAGCCGTGTTTGTATATGGAGTATGC 792
consensus_12616#4      ------------------------------------------------------------
consensus_12616#0      TATACTTGTATGCGAGTTAATTTTTTTTGTAATTTGTTCAAGCT---GTACATGGAGTGC 1006
consensus_12616#2      ------------------------------------------------------------
consensus_12616#3      ------------------------------------------------------------
                                                                                   

consensus_12616#1      TTGGCTATAAGTACTTGTATGTGGCATTTGTTTATAAAAGTTTCATTTTGGTTGGTTNAT 852
consensus_12616#4      ------------------------------------------------------------
consensus_12616#0      GCGGCTATAAGTATTTGTATATGGCATTTGTTTATATAAGTTCATTTTGGTTGGTTTAAA 1066
consensus_12616#2      ------------------------------------------------------------
consensus_12616#3      ------------------------------------------------------------
                                                                                   

consensus_12616#1      TTTAAAAAAAAAAAAAAAAAA 873
consensus_12616#4      ---------------------
consensus_12616#0      AAA------------------ 1069
consensus_12616#2      ---------------------
consensus_12616#3      ---------------------