cluster # 12643

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Oryza sativa
cluster # 12643 cluster # 12643 Sequences # 11 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12643#0 length = 1187 sequences # 8
consensus_12643#1 length = 1183 sequences # 1

consensus_12643#2 length = 522 sequences # 1
consensus_12643#3 length = 145 sequences # 1

consensusID : consensus_12643#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1187
fasta sequence

                              [GGAGGAGTGGAGGCAGGCGTGCGCCAGCGCGTTCGCCGCCATGGACGGCGAGCTCAAGCTCCAGCCGAACCTCGACTGCGCGTTCAGCGGCACGACGGCGGTGTGCGCCATCAAGCAGGGCAGGGACCTCATCATCGCCAACCTCGGCGACTCGAGGGCGGTGCTCGCCACCATGTCGGACACCGGCTACCTCCAGGCGGTGCAGCTGACGGTGGACCACAAGCCGAGCGTGCCGGAGGAGGCGGCGAGGATCAAGCGGAGCGGGG-GGAGGGTGTTCGGGCTGAAGGACGAGCCGGGGGT-GATGC-GGGTGTGGCTCCCCGGCGAGAACTCGCCGGGGCTC-GCCATGGCGAGGTCGCTGGGCGACATGAGGCTGAAGCGGCACGGCGTGATCCCGGCGCCGGAGGTGACGTCGCGGCGCGTGACGGGCGCC-GACCTGTTCATGGTGCTCGCCACGGACGGGGTGTGGGACGTGCTGAGCAACGAGGAGGTGGTGTCCATCGTGTGCGCGACGCCGCGGAAGCAGCACGCGTCGAAGGCGGTGGTGGAGGCCGCCGTGCAGCGGTGGCGGGCCAAGTTCCCGACGTCCAGGGTGGACGACTGCTCCGCCGTCTGCCTCTTCCTCCACGACCACACCCTCGGCACGGCCGCCGCCGCCTCCGCCGCAGCCGCCGCGGCCGCCAGAAAGGCGCGCAGGGCCTCCACCGCCACGCCGCCGGCGAGCTGAGGACACAAAGAAGCTCTCGCTCCGGCGAGCTCGATATTGTCCGTGTTTTTGCAGTTTTTGTTGATCTTGATGTGCTGCAAATACCTACAACCTCCGTCCCATAAAAAACCAAATCCTAGCAATGGACCTGGATATATGTGTGTCCAGATTCATCGCTGGAATTTGACTCTTTTTTTTTTTGGACAGAGAGAGTATGAATTAGTAGATAAATATAGTCTATTGTAACATAGTTTAGAGAAGATGGGAAAAAAAGAGAGGCAATTGCGAAAATGCAAATGTTGCCAAGAAAAGAGAGGGAAAAAAGAAGCTGTTTTTACTTTTGATGATCATAGTGAGGGGGAGATATTGTAATGGCTGAAGAATGGCAATCAGCCAATCTGATGTTGTTTGTGAGATACCAATTGCTTGTTGGCAATTTGGAACTTTGGAATGACATTGTAAATACCTCGCATAACTTAAAAGG]

[+] EMBL AK068836             [GGAGGAGTGGAGGCAGGCGTGCGCCAGCGCGTTCGCCGCCATGGACGGCGAGCTCAAGCTCCAGCCGAACCTCGACTGCGCGTTCAGCGGCACGACGGCGGTGTGCGCCATCAAGCAGGGCAGGGACCTCATCATCGCCAACCTCGGCGACTCGAGGGCGGTGCTCGCCACCATGTCGGACACCGGCTACCTCCAGGCGGTGCAGCTGACGGTGGACCAC AGCCGAGCGTGCCGGAGGAGGCGGCGAGGATCAAGCGGAGCGGGG GGAGGGTGTTCGGGCTGAAGGACGAGCCGGGGGT GATGC GGGTGTGGCTCCCCGGCGAGAACTCGCCGGGGCTC GCCATGGCGAGGTCGCTGGGCGACATGAGGCTGAAGCGGCACGGCGTGATCCCGGCGCCGGAGGTGACGTCGCGGCGCGTGACGGGCGCC GACCTGTTCATGGTGCTCGCCACGGACGGGGTGTGGGACGTGCTGAGCAACGAGGAGGTGGTGTCCATCGTGTGCGCGACGCCGCGGAAGCAGCACGCGTCGAAGGCGGTGGTGGAGGCCGCCGTGCAGCGGTGGCGGGCCAAGTTCCCGACGTCCAGGGTGGACGACTGCTCCGCCGTCTGCCTCTTCCTCCACGACCACACCCTCGGCACGGCCGCCGCCGCCTCCGCCGCAGCCGCCGCGGCCGCCAGAAAGGCGCGCAGGGCCTCCACCGCCACGCCGCCGGCGAGCTGAGGACACAAAGAAGCTCTCGCTCCGGCGAGCTCGATATTGTCCGTGTTTTTGCAGTTTTTGTTGATCTTGATGTGCTGCAAATACCTACAACCTCCGTCCCATAAAAAACCAAATCCTAGCAATGGACCTGGATATATGTGTGTCCAGATTCATCGCTGGAATTTGACTCTTTTTTTTTTTGGACAGAGAGAGTATGAATTAGTAGATAAATATAGTCTATTGTAACATAGTTTAGAGAAGATGGGAAAAAAAGAGAGGCAATTGCGAAAATGCAAATGTTGCCAAGAAAAGAGAGGGAAAAAAGAAGCTGTTTTTACTTTTGATGATCATAGTGAGGGGGAGATATTGTAATGGCTGAAGAATGGCAATCAGCCAATCTGATGTTGTTTGTGAGATACCAATTGCTTGTTGGCAATTTGGAACTTTGGAATGACATTGTAAATACCTCGCAT           ]
[+] EMBL AK067205             [GGAGGAGTGGAGGCAGGCGTGCGCCAGCGCGTTCGCCGCCATGGACGGCGAGCTCAAGCTCCAGCCGAACCTCGACTGCGCGTTCAGCGGCACGACGGCGGTGTGCGCCATCAAGCAGGGCAGGGACCTCATCATCGCCAACCTCGGCGACTCGAGGGCGGTGCTCGCCACCATGTCGGACACCGGCTACCTCCAGGCGGTGCAGCTGACGGTGGACCACAAGCCGAGCGTGCCGGAGGAGGCGGCGAGGATCAAGCGGAGCGGGG GGAGGGTGTTCGGGCTGAAGGACGAGCCGGGGGT GATGC GGGTGTGGCTCCCCGGCGAGAACTCGCCGGGGCTC GCCATGGCGAGGTCGCTGGGCGACATGAGGCTGAAGCGGCACGGCGTGATCCCGGCGCCGGAGGTGACGTCGCGGCGCGTGACGGGCGCC GACCTGTTCATGGTGCTCGCCACGGACGGGGTGTGGGACGTGCTGAGCAACGAGGAGGTGGTGTCCATCGTGTGCGCGACGCCGCGGAAGCAGCACGCGTCGAAGGCGGTGGTGGAGGCCGCCGTGCAGCGGTGGCGGGCCAAGTTCCCGACGTCCAGGGTGGACGACTGCTCCGCCGTCTGCCTCTTCCTCCACGACCACACCCTCGGCACGGCCGCCGCCGCCTCCGCCGCAGCCGCCGCGGCCGCCAGAAAGGCGCGCAGGGCCTCCACCGCCACGCCGCCGGCGAGCTGAGGACACAAAGAAGCTCTCGCTCCGGCGAGCTCGATATTGTCCGTGTTTTTGCAGTTTTTGTTGATCTTGATGTGCTGCAAATACCTACAACCTCCGTCCCATAAAAAACCAAATCCTAGCAATGGACCTGGATATATGTGTGTCCAGATTCATCGCTGGAATTTGACTCTTTTTTTTTTTGGACAGAGAGAGTATGAATTAGTAGATAAATATAGTCTATTGTAACATAGTTTAGAGAAGATGGGAAAAAAAGAGAGGCAATTGCGAAAATGCAAATGTTGCCAAGAAAAGAGAGGGAAAAAAGAAGCTGTTTTTACTTTTGATGATCATAGTGAGGGGGAGATATTGTAATGGCTGAAGAATGGCAATCAGCCAATCTGATGTTGTTTGTGAGATACCAATTGCTTGTTGGCAATTTGGAACTTTGGAATGACATTGTA                       ]
[+] EMBL CB652267             [                                    CGCCATGGACGGCGAGCTCAAGCTCCAGCCGAACCTCGACTGCGCGTTCAGCGGCACGACGGCGGTGTGCGCCATCAAGCAGGGCAGGGACCTCATCATCGCCAACCTCGGCGACTCGAGGGCGGTGCTCGCCACCATGTCGGACACCGGCTACCTCCAGGCGGTGCAGCTGACGGTGGACCACAAGCCGAGCGTGCCGGAGGAGGCGGCGAGGATCAAGCGGAGCGGGG GGAGGGTGTTCGGGCTGAAGGACGAGCCGGGGGT GATGC GGGTGTGGCTCCCCGGCGAGAACTCGCCGGGGCTC GCCATGGCGAGGTCGCTGGGCGACATGAGGCTGAAGCGGCACGGCGTGATCCCGGCGCCGGAGGTGACGTCGCGGCGCGTGACGGGCGCC GACCTGTTCATGGTGCTCACCACGGACGGGGTGTGGGACGTGCTGAGCAACGAGGAGGTGGTGTCCATCGTGTGCGCGACGCCGCGGAAGCAGCACGCGTCGAAGGCGGTGGTGGAGGCCGCCGTGCAGCGGTGGCGGGCCAAATTCCCAACGTCCAGGGTGGACGACTGCTCCGCCGTCTGCCTCTTCCTCCACGACCACACCCTCGGCACGGCCGCCGCCGCCTCCACCGCAGCCGCCGCGGCCGCCAGAAAGGCGCGCAGGGCCTCCACCGCCACGCCGCCGGCGAGCTGAGGACACAAAGAAGCTCTCGCTCCGGCGAGCTCGATATTGTCCGTGTTTCTGCAGTTTTTGT                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CB640202             [                                                                                                                 AGCAGGGCAGGGACCTCATCATCGCCAACCTCGGCGACTCGAGGGCGGTGCTCGCCACCATGTCGGACACCGGCTACCTCCAGGCGGTGCAGCTGACGGTGGACCACAAGCCGAGCGTGCCGGAGGAGGCGGCGAGGATCAAGCGGAGCGGGG GGAGGGTGTTCGGGCTGAAGGACTATCCGGGGGT GATGC GGGTGTGGCTCCCCGGCGAGAACTCGCCGGGGCTC GCCATGGCGAGGTCGCTGGGCGACATGATGCTGAAGCGGCACGGCGTGATCCCGGCGCCGGAGGTGACGTCGCGGCGCGTGACTGGCGCC TACCTGTTCATGGTGCTCGCCCCAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BI811415             [                                                                                                                                                                                                                    TGGACCACAAACCAAGCGTGCCCGAGGA GCGGCGAGGATCAAGCGGACCGGGG GGA GGT TTCGGGCTGAAGGACGAGCCAGGGGTAGATGC GGGTGT GCTGCCCGGGGAGAACTCGCCGGGGCTCAGCCATGGCGAGGTCGCTGGGCGACATGAGGCTGAAGCGGCACGGCGTGATCCCGGCGCCGGAGGTGACGTCGCGGCGCGTGACGGGCGCCAGACCTGTTCATGGTGCTCGCCACGGACGGGGTGT GGACGTGCTGAGCAACGAGGAGGTGGTGTCCATCGTGTGCGCGACGCCGCGGAAGCAGCACGCGTCGAA GCGGTGGTGGA GCC CCGTGCAGCGGTGGCGGGCCAAGTTCCCGACGTCCAGGGTGGACGACTGCTCCGCCGTCTGCCTCTTCCTCCACGACCACACCCTCGGCACGGCCGCCGCCGCCGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BI810104             [                                                                                                                                                                                                                                                           TCAAGCGGAGCGGGGTGGAGGTTGTTCGGGCTGAAGGACGAGCCAGGGGTAGATGCAGGGTGT GCTGCCCGGGGAGAACTCGCCGGGGCTC CCCATGGCGAGGTC CTGGGCGACATGAGGCTGAAGCGGCACGGCGTGATCCCGGCGCCGGAGGTGACGTCGCGGCGCGTGACGGGCGCC GACCTGTTCATGGTGCTCGCCACGGACGGGGTGTGGGACGTGCTGAGCAACGAGGAGGTGGTGTCCATCGTGTGCGCGACGCCGCGGAAGCAGCACGCGTCGAAGGCGGTGGTGGA GCCGCCGTGCAGCGGTGGCGGGCCAAGTTCCCGACGTCCAGGGTGGACGACTGCTCCGCCGTCTGCCTCTTCCTCCACGACCACACCCTCGGCAC GCCGCCGCCGCCGCCGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CB655345             [                                                                                                                                                                                                                                                                                                                                                                                                                                    GCGTGACGGGCGCC GACCTGTTCATGGTGCTCGCCACGGACGGGGTGTGGGACGTGCTGAGCAACGAGGAGGTGGTGTCCATCGTGTGCGCGACGCCGCGGAAGCAGCACGCGTCGAAGGCGGTGGTGGAGGCCGCCGTGCAGCGGTGGCGGGCCAAGTTCCCGACGTCCAGGGTGGACGACTGCTCCGCCGTCTGCCTCTTCCTCCACGACCACACCCTCGGCACGGCCGCCGCCGCCTCCGCCGCAGCCGCCGCGGCCGCCAGAAAGGCGCGCAGGGCCTCCACCGCCACGCCGCCGGCGAGCTGAGGACACAAAGAAGCTCTCGCTCCGGCGAGCTCGATATTGTCCGTGTTTTTGCAGTTTTTGTTGATCTTGATGTGCTGCAAATACCTACAACCTCCGTCCCATAAAAAACCAAATCCTAGCAATGGACCTGGATATATGTGTGTCCAGATTCATCGCTGGAATTTGACTC TTTTTTTTTTGGACAGAGAGAGTATGAATTAGTAGATAAATATAGTCTATTGTAACATAGTTTAGAGAAGATGGGAAAAAAAGAGAGGCAATTGCGAAAATGCAAATGTTGCCAAGAAAAGAGAGGGAAAAAAGAAGCTGTTTTTACTTTTGATGATCATAGTGAGGGGGAGATATTGTAATGGCTGAAGAATGGCAATCAGCCAATCTGATGTTGTTTGTGAGATACCAATTGCTTGTTGGCAATTTGGAAGTTTGGAATGACATTGTAAATACCTCGCATAACTTAAAAGG]
[-] EMBL CB684724             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TGGGACGTGCTGAGCAACGAGGAGGTGGTGTCCATCGTGTGCGCGACGCCGCGGAAGCAGCACGCGTCGAAGGCGGTGGTGGAGGCCGCCGTGCAGCGGTGGCGGGCCAAGTTCCCGACGTCCAGGGTGGACGACTGCTCCGCCGTTTGCTTTTTCCTCCACGACCACACCCTCGGCACGGCCGCCGCCGCCTCCGCCGCAGCCGCCGCGGCCGCCAGAAAGGCGCGCAGGGCCTCCACCGCCACGCCGCCGGGGAGCTGAGGACACAAAGAAGCTCTCGCTCCGGCGAGCTCGATATTGTCCGTGTTTTTGCAGTTTTTGTTGATCTTGATGTGCTGCAAATACCTACAACCTCCGTCCCATAAAAAACCAAATCCTAGCAATGGACCTGGATATATGTGTGTCCAGATTCATCGCTGGAATTTGACTCTTTTTTTTTTTGGACAGAGAGAGTATGAATTAGTAGATAAATATAGTCTATTGTAACATAGTTTAGAGAAGATGGGAAAAAAAGAGAGGCAATTGCGAAAATGCAAATGTTGCCAAGAAAAGAGAGGGAAAAAAGAAGCTGTTTTTACTTTTGATGATCATAGTGAGGGGGAGATATTGTAATGGCTGAAGAATGGCAATCAGCCAATCTGATGTTGTTTGTGAGATACCAATTGCTTGTTGGCAATTTAGAGCTTTGGAATGACATTGTAAAT                    ]




>consensus_12643#0
GGAGGAGTGGAGGCAGGCGTGCGCCAGCGCGTTCGCCGCCATGGACGGCGAGCTCAAGCT
CCAGCCGAACCTCGACTGCGCGTTCAGCGGCACGACGGCGGTGTGCGCCATCAAGCAGGG
CAGGGACCTCATCATCGCCAACCTCGGCGACTCGAGGGCGGTGCTCGCCACCATGTCGGA
CACCGGCTACCTCCAGGCGGTGCAGCTGACGGTGGACCACAAGCCGAGCGTGCCGGAGGA
GGCGGCGAGGATCAAGCGGAGCGGGGGGAGGGTGTTCGGGCTGAAGGACGAGCCGGGGGT
GATGCGGGTGTGGCTCCCCGGCGAGAACTCGCCGGGGCTCGCCATGGCGAGGTCGCTGGG
CGACATGAGGCTGAAGCGGCACGGCGTGATCCCGGCGCCGGAGGTGACGTCGCGGCGCGT
GACGGGCGCCGACCTGTTCATGGTGCTCGCCACGGACGGGGTGTGGGACGTGCTGAGCAA
CGAGGAGGTGGTGTCCATCGTGTGCGCGACGCCGCGGAAGCAGCACGCGTCGAAGGCGGT
GGTGGAGGCCGCCGTGCAGCGGTGGCGGGCCAAGTTCCCGACGTCCAGGGTGGACGACTG
CTCCGCCGTCTGCCTCTTCCTCCACGACCACACCCTCGGCACGGCCGCCGCCGCCTCCGC
CGCAGCCGCCGCGGCCGCCAGAAAGGCGCGCAGGGCCTCCACCGCCACGCCGCCGGCGAG
CTGAGGACACAAAGAAGCTCTCGCTCCGGCGAGCTCGATATTGTCCGTGTTTTTGCAGTT
TTTGTTGATCTTGATGTGCTGCAAATACCTACAACCTCCGTCCCATAAAAAACCAAATCC
TAGCAATGGACCTGGATATATGTGTGTCCAGATTCATCGCTGGAATTTGACTCTTTTTTT
TTTTGGACAGAGAGAGTATGAATTAGTAGATAAATATAGTCTATTGTAACATAGTTTAGA
GAAGATGGGAAAAAAAGAGAGGCAATTGCGAAAATGCAAATGTTGCCAAGAAAAGAGAGG
GAAAAAAGAAGCTGTTTTTACTTTTGATGATCATAGTGAGGGGGAGATATTGTAATGGCT
GAAGAATGGCAATCAGCCAATCTGATGTTGTTTGTGAGATACCAATTGCTTGTTGGCAAT
TTGGAACTTTGGAATGACATTGTAAATACCTCGCATAACTTAAAAGG

consensusID : consensus_12643#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1183
fasta sequence

                              [GTGCTGAGCAACGAGGAGGTGGTGTCCATCGTGTGCGCGACGCCGCGGAAGCAGCACGCGTCGAAGGCGGTGGTGGAGGCCGCCGTGCAGCGGTGGCGGGCCAAGTTCCCGACGTCCAGGGTGGACGACTGCTCCGCCGTCTGCCTCTTCCTCCACGACCACACCCTCGGCACGGCCGCCGCCGCCTCCGCCGCAGCCGCCGCGGCCGCCAGAAAGGCGTGCGCCAGCGCGTTCGCCGCCATGGACGGCGAGCTCAAGCTCCAGCCGAACCTCGACTGCGCGTTCAGCGGCACGACGGCGGTGTGCGCCATCAAGCAGGGCAGGGACCTCATCATCGCCAACCTCGGCGACTCGAGGGCGGTGCTCGCCACCATGTCGGACACCGGCTACCTCCAGGCGGTGCAGCTGACGGTGGACCACAAGCCGAGCGTGCCGGAGGAGGCGGCGAGGATCAAGCGGAGCGGGGGGAGGGTGTTCGGGCTGAAGGACGAGCCGGGGGTGATGCGGGTGTGGCTCCCCGGCGAGAACTCGCCGGGGCTCGCCATGGCGAGGTCGCTGGGCGACATGAGGCTGAAGCGGCACGGCGTGATCCCGGCGCCGGAGGTGACGTCGCGGCGCGTGACGGGCGCCGACCTGTTCATGGTGCTCGCCACGGACGGGGTGTGGGACGTGCTGAGCAACGAGGAGGTGGTGTCCATCGTGTGCGACGCCGCGGAAGCAGCACGCACGCCGCCGGCGAGCTGAGGACACAAAGAAGCTCTCGCTCCGGCGAGCTCGATATTGTCCGTGTTTTTGCAGTTTTTGTTGATCTTGATGTGCTGCAAATACCTACAACCTCCGTCCCATAAAAAACCAAATCCTAGCAATGGACCTGGATATATGTGTGTCCAGATTCATCGCTGGAATTTGACTCTTTTTTTTTTGGACAGAGAGAGTATGAATTAGTAGATAAATATAGTCTATTGTAACATAGTTTAGAGAAGATGGGAAAAAAAGAGAGGCAATTGCGAAAATGCAAATGTTGCCAAGAAAAGAGAGGGAAAAAAGAAGCTGTTTTTACTTTTGATGATCATAGTGAGGGGGAGATATTGTAATGGCTGAAGAATGGCAATCAGCCAATCTGATGTTGTTTGTGAGATACCAATTGCTTGTTGGCAATTTGGAACTTTGGAATGACATTGTA]

[+] EMBL AK072080             [GTGCTGAGCAACGAGGAGGTGGTGTCCATCGTGTGCGCGACGCCGCGGAAGCAGCACGCGTCGAAGGCGGTGGTGGAGGCCGCCGTGCAGCGGTGGCGGGCCAAGTTCCCGACGTCCAGGGTGGACGACTGCTCCGCCGTCTGCCTCTTCCTCCACGACCACACCCTCGGCACGGCCGCCGCCGCCTCCGCCGCAGCCGCCGCGGCCGCCAGAAAGGCGTGCGCCAGCGCGTTCGCCGCCATGGACGGCGAGCTCAAGCTCCAGCCGAACCTCGACTGCGCGTTCAGCGGCACGACGGCGGTGTGCGCCATCAAGCAGGGCAGGGACCTCATCATCGCCAACCTCGGCGACTCGAGGGCGGTGCTCGCCACCATGTCGGACACCGGCTACCTCCAGGCGGTGCAGCTGACGGTGGACCACAAGCCGAGCGTGCCGGAGGAGGCGGCGAGGATCAAGCGGAGCGGGGGGAGGGTGTTCGGGCTGAAGGACGAGCCGGGGGTGATGCGGGTGTGGCTCCCCGGCGAGAACTCGCCGGGGCTCGCCATGGCGAGGTCGCTGGGCGACATGAGGCTGAAGCGGCACGGCGTGATCCCGGCGCCGGAGGTGACGTCGCGGCGCGTGACGGGCGCCGACCTGTTCATGGTGCTCGCCACGGACGGGGTGTGGGACGTGCTGAGCAACGAGGAGGTGGTGTCCATCGTGTGCGACGCCGCGGAAGCAGCACGCACGCCGCCGGCGAGCTGAGGACACAAAGAAGCTCTCGCTCCGGCGAGCTCGATATTGTCCGTGTTTTTGCAGTTTTTGTTGATCTTGATGTGCTGCAAATACCTACAACCTCCGTCCCATAAAAAACCAAATCCTAGCAATGGACCTGGATATATGTGTGTCCAGATTCATCGCTGGAATTTGACTCTTTTTTTTTTGGACAGAGAGAGTATGAATTAGTAGATAAATATAGTCTATTGTAACATAGTTTAGAGAAGATGGGAAAAAAAGAGAGGCAATTGCGAAAATGCAAATGTTGCCAAGAAAAGAGAGGGAAAAAAGAAGCTGTTTTTACTTTTGATGATCATAGTGAGGGGGAGATATTGTAATGGCTGAAGAATGGCAATCAGCCAATCTGATGTTGTTTGTGAGATACCAATTGCTTGTTGGCAATTTGGAACTTTGGAATGACATTGTA]




>consensus_12643#1
GTGCTGAGCAACGAGGAGGTGGTGTCCATCGTGTGCGCGACGCCGCGGAAGCAGCACGCG
TCGAAGGCGGTGGTGGAGGCCGCCGTGCAGCGGTGGCGGGCCAAGTTCCCGACGTCCAGG
GTGGACGACTGCTCCGCCGTCTGCCTCTTCCTCCACGACCACACCCTCGGCACGGCCGCC
GCCGCCTCCGCCGCAGCCGCCGCGGCCGCCAGAAAGGCGTGCGCCAGCGCGTTCGCCGCC
ATGGACGGCGAGCTCAAGCTCCAGCCGAACCTCGACTGCGCGTTCAGCGGCACGACGGCG
GTGTGCGCCATCAAGCAGGGCAGGGACCTCATCATCGCCAACCTCGGCGACTCGAGGGCG
GTGCTCGCCACCATGTCGGACACCGGCTACCTCCAGGCGGTGCAGCTGACGGTGGACCAC
AAGCCGAGCGTGCCGGAGGAGGCGGCGAGGATCAAGCGGAGCGGGGGGAGGGTGTTCGGG
CTGAAGGACGAGCCGGGGGTGATGCGGGTGTGGCTCCCCGGCGAGAACTCGCCGGGGCTC
GCCATGGCGAGGTCGCTGGGCGACATGAGGCTGAAGCGGCACGGCGTGATCCCGGCGCCG
GAGGTGACGTCGCGGCGCGTGACGGGCGCCGACCTGTTCATGGTGCTCGCCACGGACGGG
GTGTGGGACGTGCTGAGCAACGAGGAGGTGGTGTCCATCGTGTGCGACGCCGCGGAAGCA
GCACGCACGCCGCCGGCGAGCTGAGGACACAAAGAAGCTCTCGCTCCGGCGAGCTCGATA
TTGTCCGTGTTTTTGCAGTTTTTGTTGATCTTGATGTGCTGCAAATACCTACAACCTCCG
TCCCATAAAAAACCAAATCCTAGCAATGGACCTGGATATATGTGTGTCCAGATTCATCGC
TGGAATTTGACTCTTTTTTTTTTGGACAGAGAGAGTATGAATTAGTAGATAAATATAGTC
TATTGTAACATAGTTTAGAGAAGATGGGAAAAAAAGAGAGGCAATTGCGAAAATGCAAAT
GTTGCCAAGAAAAGAGAGGGAAAAAAGAAGCTGTTTTTACTTTTGATGATCATAGTGAGG
GGGAGATATTGTAATGGCTGAAGAATGGCAATCAGCCAATCTGATGTTGTTTGTGAGATA
CCAATTGCTTGTTGGCAATTTGGAACTTTGGAATGACATTGTA

consensusID : consensus_12643#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 522
fasta sequence

                              [AGGCCGTGCTCCCACCATGTCGGACACCGGCTACCTCCAGCGGTGCAGCTGACGGTGGACCAACAAACCAAGCGTGCCCGAGGAGCGGCGAGGATCAAGCGGAGCGGGGGGAGGGTGTTCGGCTGAAGGACGAGCCAGGGGTGATGCGGGTGTGGCTGCCCGGGGAGAACTCGCCAGGGGCTCGCACATGGCGAGGTCAGCTGGGCGACATGAGGCTGAAGCAGGCACGGCAGTGATCCCGGCGCACGGAGGTGACGTCGCGGCGCAGTGACGGGCAGCACGACCTGTTCATGGTGCTCAGCCACGGACGGGGTGTGGACGTGCTGAGCAACGAGGAGGTGGTGTCCATCAGTGTGCGCGACGCCGCGGAAGCAGCACGCGTCGAAGCGTGTGGAGCCGCCGTGCAGCGGTGGCGGGCCAAGTTCCCGACGTCCAGGGTGGACGACTGCTCCAGCCGTCTGCCTCTTCCTCCACAGACCACACCCTCGGCACGCCCCCGCCGCCCCACACCCCCGCCGCTTA]

[+] EMBL BI810991             [AGGCCGTGCTCCCACCATGTCGGACACCGGCTACCTCCAGCGGTGCAGCTGACGGTGGACCAACAAACCAAGCGTGCCCGAGGAGCGGCGAGGATCAAGCGGAGCGGGGGGAGGGTGTTCGGCTGAAGGACGAGCCAGGGGTGATGCGGGTGTGGCTGCCCGGGGAGAACTCGCCAGGGGCTCGCACATGGCGAGGTCAGCTGGGCGACATGAGGCTGAAGCAGGCACGGCAGTGATCCCGGCGCACGGAGGTGACGTCGCGGCGCAGTGACGGGCAGCACGACCTGTTCATGGTGCTCAGCCACGGACGGGGTGTGGACGTGCTGAGCAACGAGGAGGTGGTGTCCATCAGTGTGCGCGACGCCGCGGAAGCAGCACGCGTCGAAGCGTGTGGAGCCGCCGTGCAGCGGTGGCGGGCCAAGTTCCCGACGTCCAGGGTGGACGACTGCTCCAGCCGTCTGCCTCTTCCTCCACAGACCACACCCTCGGCACGCCCCCGCCGCCCCACACCCCCGCCGCTTA]




>consensus_12643#2
AGGCCGTGCTCCCACCATGTCGGACACCGGCTACCTCCAGCGGTGCAGCTGACGGTGGAC
CAACAAACCAAGCGTGCCCGAGGAGCGGCGAGGATCAAGCGGAGCGGGGGGAGGGTGTTC
GGCTGAAGGACGAGCCAGGGGTGATGCGGGTGTGGCTGCCCGGGGAGAACTCGCCAGGGG
CTCGCACATGGCGAGGTCAGCTGGGCGACATGAGGCTGAAGCAGGCACGGCAGTGATCCC
GGCGCACGGAGGTGACGTCGCGGCGCAGTGACGGGCAGCACGACCTGTTCATGGTGCTCA
GCCACGGACGGGGTGTGGACGTGCTGAGCAACGAGGAGGTGGTGTCCATCAGTGTGCGCG
ACGCCGCGGAAGCAGCACGCGTCGAAGCGTGTGGAGCCGCCGTGCAGCGGTGGCGGGCCA
AGTTCCCGACGTCCAGGGTGGACGACTGCTCCAGCCGTCTGCCTCTTCCTCCACAGACCA
CACCCTCGGCACGCCCCCGCCGCCCCACACCCCCGCCGCTTA

consensusID : consensus_12643#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 145
fasta sequence

                              [AGCAGCACGCGTCTGAAGTCGTGTGGTGGAGGCACGCCAGTGCAGCGTGCGGCACAAGTTCCCGACGTCCAGGGTGGACGACTGCTCCGCCGTCTGCCTCTTCCTCCACGACCACACCCTCGGCACGGCCGCCACCGCCGCCGCA]

[+] EMBL BI810507             [AGCAGCACGCGTCTGAAGTCGTGTGGTGGAGGCACGCCAGTGCAGCGTGCGGCACAAGTTCCCGACGTCCAGGGTGGACGACTGCTCCGCCGTCTGCCTCTTCCTCCACGACCACACCCTCGGCACGGCCGCCACCGCCGCCGCA]




>consensus_12643#3
AGCAGCACGCGTCTGAAGTCGTGTGGTGGAGGCACGCCAGTGCAGCGTGCGGCACAAGTT
CCCGACGTCCAGGGTGGACGACTGCTCCGCCGTCTGCCTCTTCCTCCACGACCACACCCT
CGGCACGGCCGCCACCGCCGCCGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12643#1      GTGCTGAGCAACGAGGAGGTGGTGTCCATCGTGTGCGCGACGCCGCGGAAGCAGCACGCG 60
consensus_12643#3      -------------------------------------------------AGCAGCACGCG 11
consensus_12643#0      ------------------------------------------------------------
consensus_12643#2      ------------------------------------------------------------
                                                                                   

consensus_12643#1      TC-GAAGGCG-GTGGTGGAGGC-CGCC-GTGCAGCGGTGGCGGGCCAAGTTCCCGACGTC 116
consensus_12643#3      TCTGAAGTCGTGTGGTGGAGGCACGCCAGTGCAGCGT--GCGGCACAAGTTCCCGACGTC 69
consensus_12643#0      ------------------------------------------------------------
consensus_12643#2      ------------------------------------------------------------
                                                                                   

consensus_12643#1      CAGGGTGGACGACTGCTCCGCCGTCTGCCTCTTCCTCCACGACCACACCCTCGGCACGGC 176
consensus_12643#3      CAGGGTGGACGACTGCTCCGCCGTCTGCCTCTTCCTCCACGACCACACCCTCGGCACGGC 129
consensus_12643#0      ------------------------------------------------------------
consensus_12643#2      ------------------------------------------------------------
                                                                                   

consensus_12643#1      CGCCGCCGCCTCCGCCGCAGCCGCCGCGGCCGCCAGAAAGGCGTGCGCCAGCGCGTTCGC 236
consensus_12643#3      CGCCACCGCCGCCGCA-------------------------------------------- 145
consensus_12643#0      ------------------------GGAGGAGTGGAGGCAGGCGTGCGCCAGCGCGTTCGC 36
consensus_12643#2      ------------------------------------------------------------
                                                                                   

consensus_12643#1      CGCCATGGACGGCGAGCTCAAGCTCCAGCCGAACCTCGACTGCGCGTTCAGCGGCACGAC 296
consensus_12643#3      ------------------------------------------------------------
consensus_12643#0      CGCCATGGACGGCGAGCTCAAGCTCCAGCCGAACCTCGACTGCGCGTTCAGCGGCACGAC 96
consensus_12643#2      ------------------------------------------------------------
                                                                                   

consensus_12643#1      GGCGGTGTGCGCCATCAAGCAGGGCAGGGACCTCATCATCGCCAACCTCGGCGACTCGAG 356
consensus_12643#3      ------------------------------------------------------------
consensus_12643#0      GGCGGTGTGCGCCATCAAGCAGGGCAGGGACCTCATCATCGCCAACCTCGGCGACTCGAG 156
consensus_12643#2      -----------------------------------------------------------A 1
                                                                                   

consensus_12643#1      GGCGGTGCTCGCCACCATGTCGGACACCGGCTACCTCCAGGCGGTGCAGCTGACGGTGGA 416
consensus_12643#3      ------------------------------------------------------------
consensus_12643#0      GGCGGTGCTCGCCACCATGTCGGACACCGGCTACCTCCAGGCGGTGCAGCTGACGGTGGA 216
consensus_12643#2      GGCCGTGCTC-CCACCATGTCGGACACCGGCTACCTCCAG-CGGTGCAGCTGACGGTGGA 59
                                                                                   

consensus_12643#1      CCA-CAAGCCGAGCGTGCCGGAGGAGGCGGCGAGGATCAAGCGGAGCGGGGGGAGGGTGT 475
consensus_12643#3      ------------------------------------------------------------
consensus_12643#0      CCA-CAAGCCGAGCGTGCCGGAGGAGGCGGCGAGGATCAAGCGGAGCGGGGGGAGGGTGT 275
consensus_12643#2      CCAACAAACCAAGCGTGCCCGAGGAG-CGGCGAGGATCAAGCGGAGCGGGGGGAGGGTGT 118
                                                                                   

consensus_12643#1      TCGGGCTGAAGGACGAGCCGGGGGTGATGCGGGTGTGGCTCCCCGGCGAGAACTCGCC-G 534
consensus_12643#3      ------------------------------------------------------------
consensus_12643#0      TCGGGCTGAAGGACGAGCCGGGGGTGATGCGGGTGTGGCTCCCCGGCGAGAACTCGCC-G 334
consensus_12643#2      TCGG-CTGAAGGACGAGCCAGGGGTGATGCGGGTGTGGCTGCCCGGGGAGAACTCGCCAG 177
                                                                                   

consensus_12643#1      GGGCTCGC-CATGGCGAGGTC-GCTGGGCGACATGAGGCTGAAGC-GGCACGGC-GTGAT 590
consensus_12643#3      ------------------------------------------------------------
consensus_12643#0      GGGCTCGC-CATGGCGAGGTC-GCTGGGCGACATGAGGCTGAAGC-GGCACGGC-GTGAT 390
consensus_12643#2      GGGCTCGCACATGGCGAGGTCAGCTGGGCGACATGAGGCTGAAGCAGGCACGGCAGTGAT 237
                                                                                   

consensus_12643#1      CCCGGCGC-CGGAGGTGACGTCGCGGCGC-GTGACGGGCGCC--GACCTGTTCATGGTGC 646
consensus_12643#3      ------------------------------------------------------------
consensus_12643#0      CCCGGCGC-CGGAGGTGACGTCGCGGCGC-GTGACGGGCGCC--GACCTGTTCATGGTGC 446
consensus_12643#2      CCCGGCGCACGGAGGTGACGTCGCGGCGCAGTGACGGGCAGCACGACCTGTTCATGGTGC 297
                                                                                   

consensus_12643#1      TC-GCCACGGACGGGGTGTGGGACGTGCTGAGCAACGAGGAGGTGGTGTCCATC---GTG 702
consensus_12643#3      ------------------------------------------------------------
consensus_12643#0      TC-GCCACGGACGGGGTGTGGGACGTGCTGAGCAACGAGGAGGTGGTGTCCATC-GTGTG 504
consensus_12643#2      TCAGCCACGGACGGGGTGTGG-ACGTGCTGAGCAACGAGGAGGTGGTGTCCATCAGTGTG 356
                                                                                   

consensus_12643#1      TGCGACGCCGCGGAAGCAGCACGCACGCCGCCGGCGAGCTGAGGACACAAAGAAGCTCTC 762
consensus_12643#3      ------------------------------------------------------------
consensus_12643#0      CGCGACGCCGCGGAAGCAGCACGC-----GTCGAAGGC-GGTGGTGGA-----GGCCGCC 553
consensus_12643#2      CGCGACGCCGCGGAAGCAGCACGC-----GTCGAAGCG-TGTGG---------AGCCGCC 401
                                                                                   

consensus_12643#1      GCTCCGGCGAGCTCGATATTGTCCGTGTTTTTGCAGTTTTTGTTGATCTTGATGTGCTGC 822
consensus_12643#3      ------------------------------------------------------------
consensus_12643#0      G-TGCAGCGGTGGCG-----GGCCAAGTTCCCGACGTCCAGGGTGGAC--GAC-TGCTCC 604
consensus_12643#2      G-TGCAGCGGTGGCG-----GGCCAAGTTCCCGACGTCCAGGGTGGAC--GAC-TGCTCC 452
                                                                                   

consensus_12643#1      AAATACCTACAACCTCCGTCCCATAAAAAACCAAATCCTAGCAATGGACCTGGATATATG 882
consensus_12643#3      ------------------------------------------------------------
consensus_12643#0      -GCCGTCTGCCTCTTCCTCCAC------GACCACACCCTCGGCACGGCCGCCGCCGC--- 654
consensus_12643#2      AGCCGTCTGCCTCTTCCTCCACA-----GACCACACCCTCGGCACG-CCCCCGCCGC--- 503
                                                                                   

consensus_12643#1      TGTGTCCAGATTCATCGCTGGAATTTGACTCTTTTTTTTTTGGACAGAGAGAGTATGAAT 942
consensus_12643#3      ------------------------------------------------------------
consensus_12643#0      --CTC-CGCCGCAGCCGCCGCGGCCGCCAGAAAGGCGCGCAGGGCCTCCACCGCCACGCC 711
consensus_12643#2      --CCCACACCCCCGCCGCTTA--------------------------------------- 522
                                                                                   

consensus_12643#1      TAGTAGATAAATATAGTCTATTGTAACATAGTTTAGAGAAGATGGGAAAAAAAGAGAGGC 1002
consensus_12643#3      ------------------------------------------------------------
consensus_12643#0      GCCGGCGAGCTGAGGACACAAAGAAGCTCTCGCTCCGGCGAGCTCGATATTGTCCGTGTT 771
consensus_12643#2      ------------------------------------------------------------
                                                                                   

consensus_12643#1      AATTGCGAAAATGCAAATGTTGCCAAGAAAAGAGAGGGAAAAAAGAAGCTGTTTTTACTT 1062
consensus_12643#3      ------------------------------------------------------------
consensus_12643#0      TTTGCAGTTTTTGTTGATCTTGATGTGCTGCAAATACCTACAACCTCCGTCCCATAAAAA 831
consensus_12643#2      ------------------------------------------------------------
                                                                                   

consensus_12643#1      TTGATGATCATAGTGAGGGGGAGATATTGTAATGGCTGAAGAATGGCAATCAGCCAATCT 1122
consensus_12643#3      ------------------------------------------------------------
consensus_12643#0      ACCAAATCCTAGCAATGGACCTGGATATATGTGTGTCCAGATTCATCGCTGGAATTTGAC 891
consensus_12643#2      ------------------------------------------------------------
                                                                                   

consensus_12643#1      GATGTTGTTTGTGAGATACCAATTGCTTGTTGGCAATTTGGAACTTTGGAATGACATTGT 1182
consensus_12643#3      ------------------------------------------------------------
consensus_12643#0      TCTTTTTTTTTTTGGACAGAGAGAGTATGAATTAGTAGATAAATATAGTCTATTGTAACA 951
consensus_12643#2      ------------------------------------------------------------
                                                                                   

consensus_12643#1      A----------------------------------------------------------- 1183
consensus_12643#3      ------------------------------------------------------------
consensus_12643#0      TAGTTTAGAGAAGATGGGAAAAAAAGAGAGGCAATTGCGAAAATGCAAATGTTGCCAAGA 1011
consensus_12643#2      ------------------------------------------------------------
                                                                                   

consensus_12643#1      ------------------------------------------------------------
consensus_12643#3      ------------------------------------------------------------
consensus_12643#0      AAAGAGAGGGAAAAAAGAAGCTGTTTTTACTTTTGATGATCATAGTGAGGGGGAGATATT 1071
consensus_12643#2      ------------------------------------------------------------
                                                                                   

consensus_12643#1      ------------------------------------------------------------
consensus_12643#3      ------------------------------------------------------------
consensus_12643#0      GTAATGGCTGAAGAATGGCAATCAGCCAATCTGATGTTGTTTGTGAGATACCAATTGCTT 1131
consensus_12643#2      ------------------------------------------------------------
                                                                                   

consensus_12643#1      --------------------------------------------------------
consensus_12643#3      --------------------------------------------------------
consensus_12643#0      GTTGGCAATTTGGAACTTTGGAATGACATTGTAAATACCTCGCATAACTTAAAAGG 1187
consensus_12643#2      --------------------------------------------------------