cluster # 12678

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Oryza sativa
cluster # 12678 cluster # 12678 Sequences # 11 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12678#0 length = 1520 sequences # 9

consensus_12678#1 length = 800 sequences # 2

consensusID : consensus_12678#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 1520
fasta sequence

                              [CCCCTTTCTCGCGAAGAGAACGACGCACGCAGGCGTCGCCGTCGGCGAGCGGCGGCGGCGGACGGTGGACGGCGCGTGCGTAGCGAGCAGGGTGCGTGAGGACGGAGCTAAGCTAGCTGCTGACTAGAAGGTGATGCAACCACTCGAGCACAGAGAATATTGAGTGGATTCCTCCCTCCTCGCCCTCTGCTCGACGGGCGGTGCGTTTCTCTGTCGCTCCCATCCCCAGCCTCCACCTCCGCCTTGCTTCTCCTGAAATCCGGCCGTCCAGATCTCTGCCGCCGCAGCACCGCTCCACTCCGAGCTCCGGCGAACAGCCGGCAAATCCTAAACCCTAGACAGTGAGGGGTTGGAGCGGCGCCCGCCGCGGCGGACCGGACTGGCGGAGGGCGGGCGATTCGCGCGACGGCCGGCGTGTGCGGCGGCGACTGCGGGTCTGCGGCGCGGCGGCGGGTGCGGCTTGGCGTTGGCGGCCGGGTGGCCGGGGTTAGTAAAGGAAGAGGAAGAAGCTGAGCGCCAGATACCA-GGCCGCCCACAAGGACCCACTGCTGGACTTCAACGACTGGAGGAAGAAAGGAGGCGTGCCCGAGGTGAAGCGGTTTGCAGAAGCATAACAGCAGTCTAGCTTGACAACAATGTCAGTCCTTCGCTCCATTCTCCCGACAGTAGCAAGAAACAATGGTTGGAGATGCTTTGCTACTGGGTTTCCTTCCGATACTATAGCAGAGCTCAATAAGGAAATGGAATCTGTGTTTGGTGAATCTCCTTCACCCAGTCCTTTAGGTTCAACTCCTCAGCAACCAGCAAGGCCCACTAATGGATCAGGGGATGGACAACCAATGCTTACCCATACTGATAGCAGTGGCCAGGCAAAGATGGTTGATGTCTCATCCAAGCATGACAGCACAAGAGTTGCTATAGCCACATGCAGGGTCTTGCTA-GGCCAGGAGGCATTTGATTTGGTAGCATCAAACAAGATTGCCAAAGGAGATGTTCTAACTGTTGCAAAGATTGCTGGAATAACTGGTGCAAAGCAAACCAGCAACCTCATACCGCTGTGCCACAACCTTAATCTATCCCATGTTCGTGTTGATCTTACTCTTAACGAAGAAGATTCTAGTGTTATGATAGAAGGAGAAGCTTCAACCAGTGGCAAGACAGGGGTTGAGATGGAAGCAATGACAGCAGTTGCCATTGCTGGTCTCACAGTCTATGACATGTGCAAAGCTGCTTCAAAGAACATATGCATAACAGATATCTGTCTCCAGCACAAATCTGGTGGAAAGAGTGGAAGCTGGTCCAGAAGTTAGACATTTATGTGAATCACAAGAATGAATTGGGTACCAAATTTCATAACCACCATACCAATAGGTTCTGAGGCTTCAATAAATGTTTGTTGGAATATTTTTACTTCTAGTAATCGGATTAATTTTACTCTCTAATATCGCACAATGCACTGTTCAATTATTTTAGGATGACTGGATATATATTACCTGATGTGAAATGCATCTTTTCCCTGA]

[+] EMBL CB627707             [CCCCTTTCTCGCGAAGAGAACGACGCACGCAGGCGTCGCCGTCGGCGAGCGGCGGCGGCGGACGGTGGACGGCGCGTGCGTAGCGAGCAGGGTGCGTGAGGACGGAGCTAAGCTAGCTGCTGACTAGAAGGTGATGCAACCACTCGAGCACAGAGAATATTGAGTGGATTCCTCCCTCCTCGCCCTCTGCTCGACGGGCGGTGCGTTTCTCTGTCGCTCCCATCCCCAGCCTCCACCTCCGCCTTGCTTCTCCTGAAATCCGGCCGTCCAGATCTCTGCCGCCGCAGCACCGCTCCACTCCGAGCTCCGGCGAACAGCCGGCAAATCCTAAACCCTAGACAGTGAGGGGTTGGAGCGGCGCCCGCCGCGGCGGACCGGACTGGCGGAGGGCGGGCGATTCGCGCGACGGCCGGCGTGTGCGGCGGCGACTGCGGGTCTGCGGCGCGGCGGCGGGTGCGGCTTGGCGTTGGCGGCCGGGTGGCCGGGGTTAGTAAAGGAAGAGGAAGAAGCTGAGCGCCAGATACCA GGCCGCCCACAAGGACCCACTGCTGGACTTCAACGACTGGAGGAAGAAAGGAGGCGTGCCCGAGGTGAAGCGGTTTGCAGAAGCATAACAGCAGTCTAGCTTGACAACAATGTCAGTCCTTCGCTCCATTCTCCCGACAGTAGCAAGAAACAATGGTTGGAGATGCTTTGCTACTGGGTTTCCTTCCGATACTATACCAGAGCTCAATAAGGAAATGGAATCTGTGTTTGGTGAATCTCCTTCACCCAGTCCTTTAGGTTtc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CB627669             [CCCCTTTCTCGCGAAGAGAACGACGCACGCAGGCGTCGCCGTCGGCGAGCGGCGGCGGCGGACGGTGGACGGCGCGTGCGTAGCGAGCAGGGTGCGTGAGGACGGAGCTAAGCTAGCTGCTGACTAGAAGGTGATGCAACCACTCGAGCACAGAGAATATTGAGTGGATTCCTCCCTCCTCGCCCTCTGCTCGACGGGCGGTGCGTTTCTCTGTCGCTCCCATCCCCAGCCTCCACCTCCGCCTTGCTTCTCCTGAAATCCGGCCGTCCAGATCTCTGCCGCCGCAGCACCGCTCCACTCCGAGCTCCGGCGAACAGCCGGCAAATCCTAAACCCTAGACAGTGAGGGGTTGGAGCGGCGCCCGCCGCGGCGGACCGGACTGGCGGAGGGCGGGCGATTCGCGCGACGGCCGGCGTGTGCGGCGGCGACTGCGGGTCTGCGGCGCGGCGGCGGGTGCGGCTTGGCGTTGGCGGCCGGGTGGCCGGGGTTAGTAAAGGAAGAGGAAGAAGCTGAGCGCCAGATACCA GGCCGCCCACAAGGACCCACTGCTGGACTTCAACGACTGGAGGAAGAAAGGAGGCGTGCCCGAGGTGAAGCGGTTTGCAGAAGCATAACAGCAGTCTAGCTTGACAACAATGTCAGTCCTTCGCTCCATTCTCCCGACAGTAGCAAGAAACAATGGTTGGAGATGCTTTGCTACTGGGTTTCCTTCCGATACTATAGCAGAGCTCAATAAGGAAATGGAATCTGTGTTTGGTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CB642664             [                                        GTCGGCGAGCGGCGGCGGCGGACGGTGGACGGCGCGTGCGTAGCGAGCAGGGTGCGTGAGGACGGAGCTAAGCTAGCTGCTGACTAGAAGGTGATGCAACCACTCGAGCACAGAGAATATTGAGTGGATTCCTCCCTCCTCGCCCTCTGCTCGACGGGCGGTGCGTTTCTCTGTCGCTCCCATCCCCAGCCTCCACCTCCGCCTTGCTTCTCCTGAAATCCGGCCGTCCAGATCTCTGCCGCCGCAGCACCGCTCCACTCCGAGCTCCGGCGAACAGCCGGCAAATCCTAAACCCTAGACAGTGAGGGGTTGGAGCGGCGCCCGCCGCGGCGGACCGGACTGGCGGAGGGCGGGCGATTCGCGCGACGGCCGGCGTGTGCGGCGGCGACTGCGGGTCTGCGGCGCGGCGGCGGGCGCGGCTTGGCGTTGGCGGCCGGGTGGCCGGGGTTAGTATAGGAAGAGGAAGAAGCTGAGCGCCAGATACCA TGCCGCCCACAAGGACCCACTGCTGGACTTCAACGACTGGAGGAAGAAAGGAGGCGTGCCCGAGGTGAAGCGGTTTGCATAATCATAACAGCTGTCTAGCTTGACAACCATGTCAGTCCTTCGCTCCATTCTCCCGACAGTAGCAAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CB622399             [                                                                                                                                AGGTGATGCTACCACTCGAGCACAGAGAATATTGAGTGGATTCCTCCCTCCTCGCCCTCTGCTCGACGGGCGGTGCGTTTCTCTGTCGCTCCCATCCCCAGCCTCCACCTCCGCCTTGCTTCTCCTGAAATCCGGCCGTCCAGATCTCTGCCGCCGCAGCACCGCTCCACTCCGAGCTCCGGCGAACAGCCGGCAAATCCTAAACCCTAGACAGTGAGGGGTTGGAGCGGCGCCCGCCGCGGCGGACCGGACTGGCGGAGGGCGGGCGATTCGCGCGACGGCCGGCGTGTGCGGCGGCGACTGCGGGTCTGCGGCGCGGCGGCGGGCGCGGCTTGGCGTTGGCGGCCGGGTGGCCGGGGTTAGTAAAGGAAGAGGAAGAAGCTGAGCGCCAGATACCA GGCCGCCCACAAGGACCCACTGCTGGACTTCAACGACTGGAGGAAGAAAGGAGGCGTGCCCGAGGTGAAGCGGTTTGCAGAAGCATAACAGCAGTCTAGCTTGACAACAATGTCAGTCCTTCGCTCCATTCTCCCGACAGTAGCAAGAAACAATGGTTGGAGATGCTTTGCTACTGGGTTTCCTTCCGATACTATAGCAGAGCTCAATAAGGAAATGGAATCTGTGTTTGGTGAATCTCCTTCACCCAGTCCTTTAGGTTCAACTCCTCAGCAACCAGCAAGGCCCACTAATGGATCAGGGGATGGACAACCAATGCTTACCCATACTGATAGCAGTGGCCAGGCAAAGATGGTTGATGTCTCATCCAAGCATGACAGCACAAGAGTTGCTATAGCCACATGCAGGGTCTTGCTAGGGCCA GAGGCAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CA999515             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GAGCGCCAGATACCA GGCCGCCCACAAGGACCCACTGCTGGACTTCAACGACTGGAGGAAGAAAGGAGGCGTGCCCGAGGTGAAGCGGTTTGCAGAAGCATAACAGCAGTCTAGCTTGACAACAATGTCAGTCCTTCGCTCCATTCTCCCGACAGTAGCAAGAAACAATGGTTGGAGATGCTTTGCTACTGGGTTTCCTTCCGATACTATAGCAGAGCTCAATAAGGAAATGGAATCTGTGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CF326606             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              cacgaggCAGATACCATGGCCGCCCACAAGGACCCACTGCTGGACTTCAACGACTGGAGGAAGAAAGGAGGCGTGCCCGAGGTGAAGCGGTTTGCAGAAGCATAACAGCAGTCTAGCTTGACAACAATGTCAGTCCTTCGCTCCATTTTTCCGACAGTAGCAAGAAACAATGGTTGGAGATGCTTTGCTACTGGGTTTCCTTCCGATACTATAGCAGAGCTCAATAAGGAAATGGAATCTGTGTTTGGTGAATCTCCTTCACCCAGTCCTTTAGGTTCAACTCCTCAGCAACCAGCAAGGCCCACTAATGGATCAGGGGATGGACAACCAATGCTTACCCATACTGATAGCAGTGGCCAGGCAAAGATGGTTGATGTCTCATCCAAGCATGACAGCACAAGAGTTGCTATAGCCACATGCAGGGTCTTGCTA GGCCAGGAGGCATTTGATTTGGTAGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CA999873             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GGAGGCGTGCCCGAGGTGAAGCGGTTTGCAGAAGCATAACAGCAGTCTAGCTTGACAACAATGTCAGTCCTTCGCTCCATTCTCCCGACAGTAGCAAGAAACAATGGTTGGAGATGCTTTGCTACTGGGTTTCCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CB622400             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CTGGGTTTCCTTCCGATACTATAGCAGAGCTCAATAAGGAAATGGAATCTGTGTTTGGTGAATCTCCTTCACCCAGTCCTTTAGGTTCAACTCCTCAGCAACCAGCAAGGCCCACTAATGGATCAGGGGATGGACAACCAATGCTTACCCATACTGATAGCAGTGGCCAGGCAAAGATGGTTGATGTCTCATCCAAGCATGACAGCACAAGAGTTGCTATAGCCACATGCAGGGTCTTGCTA GGCCAGGAGGCATTTGATTTGGTAGCATCAAACAAGATTGCCAAAGGAGATGTTCTAACTGTTGCAAAGATTGCTGGAATAACTGGTGCAAAGCAAACCAGCAACCTCATACCGCTGTGCCACAACCTTAATCTATCCCATGTTCGTGTTGATCTTACTCTTAACGAAGAAGATTCTAGTGTTATGATAGAAGGAGAAGCTTCAACCAGTGGCAAGACAGGGGTTGAGATGGAAGCAATGACAGCAGTTGCCATTGCTGGTCTCACAGTCTATGACATGTGCAAAGCTGCTTCAAAGAACATATGCATAACAGATATCTGTCTCCAGCACAAATCTGGTGGAAAGAGTGGAAGCTGGTCCAGAAGTTAGACATTTATGTGAATCACAAGAATGAATTGGGTACCAAATTTCATAACCACCATACCAATAGGTTCTGAGGCTTCAATAAATGTTTGTTGGAATATTTTTACTTCTAGTAATCGGATTAATTTTACTCTCTAATATCGCACAATGCACTGTTCAATTATTTTAGGATGACTGGATATATATTACCTGATGTGAAATGCATCTTTTCCCTGA]
[-] EMBL CB642665             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AGCAGTGGCCAGGCAAAGATGGTTGATGTCTCATCCAAGCATGACAGCACAAGAGTTGTTATAGCCACATGCAGGGTCTTGCTA GGCCAGGAGGCATTTGATTTGGTAGCATCAAACAAGATTGCCAAAGGAGATGTTCTAACTGTTGCAAAGATTGCTGGAATAACTGGTGCAAAGCAAACCAGCACCCTCATACCGCTGTGCCACACCCTTAATCTATCCCATGTTCGTGTTGATCTTACTCTTAACGAAGAAGATTCTAGTGTTATGATAGAAGGAGAAGCTTCAACCAGTGGCAAGACAGGGGTTGAGATGGAAGCAATGACAGCAGTTGCCATTGCTGGTCTCCCAGTCTATGACATGTGCAAAGCTGCTTCAAAGAACATATGCATAACAGATATCTGTCTCCAGCCCAAATCTGGTGGAAAGAGTGGAAGCTGGTCCAGAAGTTAGCCATTTATGTGAATCACAAGAATGAATGGGGTACCAAATTTCATAACCCCCATACCAATAGGTTCTGAGGCTCCAATAAATGTTTGTGGGAATATTTTTACTTCTAGTGGTGGGATTAATTTTACTCTCTAATATCGCACAATGCACTGTTCAATTATTTTAGCATGACGGGATTTTTAAAGCGTGATGTGAAATG              ]




>consensus_12678#0
CCCCTTTCTCGCGAAGAGAACGACGCACGCAGGCGTCGCCGTCGGCGAGCGGCGGCGGCG
GACGGTGGACGGCGCGTGCGTAGCGAGCAGGGTGCGTGAGGACGGAGCTAAGCTAGCTGC
TGACTAGAAGGTGATGCAACCACTCGAGCACAGAGAATATTGAGTGGATTCCTCCCTCCT
CGCCCTCTGCTCGACGGGCGGTGCGTTTCTCTGTCGCTCCCATCCCCAGCCTCCACCTCC
GCCTTGCTTCTCCTGAAATCCGGCCGTCCAGATCTCTGCCGCCGCAGCACCGCTCCACTC
CGAGCTCCGGCGAACAGCCGGCAAATCCTAAACCCTAGACAGTGAGGGGTTGGAGCGGCG
CCCGCCGCGGCGGACCGGACTGGCGGAGGGCGGGCGATTCGCGCGACGGCCGGCGTGTGC
GGCGGCGACTGCGGGTCTGCGGCGCGGCGGCGGGTGCGGCTTGGCGTTGGCGGCCGGGTG
GCCGGGGTTAGTAAAGGAAGAGGAAGAAGCTGAGCGCCAGATACCAGGCCGCCCACAAGG
ACCCACTGCTGGACTTCAACGACTGGAGGAAGAAAGGAGGCGTGCCCGAGGTGAAGCGGT
TTGCAGAAGCATAACAGCAGTCTAGCTTGACAACAATGTCAGTCCTTCGCTCCATTCTCC
CGACAGTAGCAAGAAACAATGGTTGGAGATGCTTTGCTACTGGGTTTCCTTCCGATACTA
TAGCAGAGCTCAATAAGGAAATGGAATCTGTGTTTGGTGAATCTCCTTCACCCAGTCCTT
TAGGTTCAACTCCTCAGCAACCAGCAAGGCCCACTAATGGATCAGGGGATGGACAACCAA
TGCTTACCCATACTGATAGCAGTGGCCAGGCAAAGATGGTTGATGTCTCATCCAAGCATG
ACAGCACAAGAGTTGCTATAGCCACATGCAGGGTCTTGCTAGGCCAGGAGGCATTTGATT
TGGTAGCATCAAACAAGATTGCCAAAGGAGATGTTCTAACTGTTGCAAAGATTGCTGGAA
TAACTGGTGCAAAGCAAACCAGCAACCTCATACCGCTGTGCCACAACCTTAATCTATCCC
ATGTTCGTGTTGATCTTACTCTTAACGAAGAAGATTCTAGTGTTATGATAGAAGGAGAAG
CTTCAACCAGTGGCAAGACAGGGGTTGAGATGGAAGCAATGACAGCAGTTGCCATTGCTG
GTCTCACAGTCTATGACATGTGCAAAGCTGCTTCAAAGAACATATGCATAACAGATATCT
GTCTCCAGCACAAATCTGGTGGAAAGAGTGGAAGCTGGTCCAGAAGTTAGACATTTATGT
GAATCACAAGAATGAATTGGGTACCAAATTTCATAACCACCATACCAATAGGTTCTGAGG
CTTCAATAAATGTTTGTTGGAATATTTTTACTTCTAGTAATCGGATTAATTTTACTCTCT
AATATCGCACAATGCACTGTTCAATTATTTTAGGATGACTGGATATATATTACCTGATGT
GAAATGCATCTTTTCCCTGA

consensusID : consensus_12678#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 800
fasta sequence

                              [AAGGCCCACTAATGGATCAGGGGATGGACAACCAATGCTTACCCATACTGATAGCAGTGGCCAGGCAAAGATGGTTGATGTCTCATCCAAGCATGACAGCACAAGAGTTGCTATAGCCACATGCAGGGTCTTGCTAGGCCAGGAGGCATTTGATTTGGTAGCATCAAACAAGATTGCCAAAGGAGATGTTCTAACTGTTGCAAAGATTGCTGGAATAACTGGTGCAAAGCAAACCAGCAACCTCATACCGCTGTGCCACAACCTTAATCTATCCCATGTTCGTGTTGATCTTACTCTTAACGAAGAAGATTCTAGTGTTATGATAGAAGGAGAAGCTTCAACCAGTGGCAAGACAGGGGTTGAGATGGAAGCAATGACAGCAGTTGCCATTGCTGGTCTCACAGTCTATGACATGTGCAAAGCTGCTTCAAAGAACATATGCATAACAGATATCTGTCTCCAGCACAAATCTGGTGGAAAGAGTGGAAGCTGGTCCAGAAGTTAGACATTTATGTGAATCACAAGAATGAATTGGGTACCAAATTTCATAACCACCATACCAATAGGTTCTGAGGCTTCAATAAATGTTTGTTGGAATATTTTTACTTCTAGTAATCGGATTAATTTTACTCTCTAATATCGCACAATGCACTGTTCAATTATTTTAGGATGACTGGATATATATTACCTGATGTGAAAAGTCACATCGAATATACGAATATAGATTGATAGCAAAACAAATTGCAGATTCCGTCTATAAATAAAGAGACGAATTTATTATTTAATTAATCCATCATTAG]

[-] EMBL CB627708             [AAGGCCCACTAATGGATCAGGGGATGGACAACCAATGCTTACCCATACTGATAGCAGTGGCCAGGCAAAGATGGTTGATGTCTCATCCAAGCATGACAGCACAAGAGTTGCTATAGCCACATGCAGGGTCTTGCTAGGCCAGGAGGCATTTGATTTGGTAGCATCAAACAAGATTGCCAAAGGAGATGTTCTAACTGTTGCAAAGATTGCTGGAATAACTGGTGCAAAGCAAACCAGCAACCTCATACCGCTGTGCCACAACCTTAATCTATCCCATGTTCGTGTTGATCTTACTCTTAACGAAGAAGATTCTAGTGTTATGATAGAAGGAGAAGCTTCAACCAGTGGCAAGACAGGGGTTGAGATGGAAGCAATGACAGCAGTTGCCATTGCTGGTCTCACAGTCTATGACATGTGCAAAGCTGCTTCAAAGAACATATGCATAACAGATATCTGTCTCCAGCACAAATCTGGTGGAAAGAGTGGAAGCTGGTCCAGAAGTTAGACATTTATGTGAATCACAAGAATGAATTGGGTACCAAATTTCATAACCACCATACCAATAGGTTCTGAGGCTTCAATAAATGTTTGTTGGAATATTTTTACTTCTAGTAATCGGATTAATTTTACTCTCTAATATCGCACAATGCACTGTTCAATTATTTTAGGATGACTGGATATATATTACCTGATGTGAAAAGTCACATCGAATATACGAATATAGATTGATAGCAAAACAAATTGCAGATTCCGTCTATAAATAAAGAGACGAATTTATTATTTAATTA            ]
[-] EMBL CB627670             [                                                           GCCAGGCAAAGATGGTTGATGTCTCATCCAAGCATGACAGCACAAGAGTTGCTATAGCCACATGCAGGGTCTTGCTAGGCCAGGAGGCATTTGATTTGGTAGCATCAAACAAGATTGCCAAAGGAGATGTTCTAACTGTTGCAAAGATTGCTGGAATAACTGGTGCAAAGCAAACCAGCAACCTCATACCGCTGTGCCACAACCTTAATCTATCCCATGTTCGTGTTGATCTTACTCTTAACGAAGAAGATTCTAGTGTTATGATAGAAGGAGAAGCTTCAACCAGTGGCAAGACAGGGGTTGAGATGGAAGCAATGACAGCAGTTGCCATTGCTGGTCTCACAGTCTATGACATGTGCAAAGCTGCTTCAAAGAACATATGCATAACAGATATCTGTCTCCAGCACAAATCTGGTGGAAAGAGTGGAAGCTGGTCCAGAAGTTAGACATTTATGTGAATCACAAGAATGAATTGGGTACCAAATTTCATAACCACCATACCAATAGGTTCTGAGGCTTCAATAAATGTTTGTTGGAATATTTTTACTTCTAGTAATCGGATTAATTTTACTCTCTAATATCGCACAATGCACTGTTCAATTATTTTAGGATGACTGGATATATATTACCTGATGTGAAAAGTCACATCGAATATACGAATATAGATTGATAGCAAAACAAATTGCAGATTCCGTCTATAAATTACGAGGCGAATTTATTATTTAATTAATCCATCATTAG]




>consensus_12678#1
AAGGCCCACTAATGGATCAGGGGATGGACAACCAATGCTTACCCATACTGATAGCAGTGG
CCAGGCAAAGATGGTTGATGTCTCATCCAAGCATGACAGCACAAGAGTTGCTATAGCCAC
ATGCAGGGTCTTGCTAGGCCAGGAGGCATTTGATTTGGTAGCATCAAACAAGATTGCCAA
AGGAGATGTTCTAACTGTTGCAAAGATTGCTGGAATAACTGGTGCAAAGCAAACCAGCAA
CCTCATACCGCTGTGCCACAACCTTAATCTATCCCATGTTCGTGTTGATCTTACTCTTAA
CGAAGAAGATTCTAGTGTTATGATAGAAGGAGAAGCTTCAACCAGTGGCAAGACAGGGGT
TGAGATGGAAGCAATGACAGCAGTTGCCATTGCTGGTCTCACAGTCTATGACATGTGCAA
AGCTGCTTCAAAGAACATATGCATAACAGATATCTGTCTCCAGCACAAATCTGGTGGAAA
GAGTGGAAGCTGGTCCAGAAGTTAGACATTTATGTGAATCACAAGAATGAATTGGGTACC
AAATTTCATAACCACCATACCAATAGGTTCTGAGGCTTCAATAAATGTTTGTTGGAATAT
TTTTACTTCTAGTAATCGGATTAATTTTACTCTCTAATATCGCACAATGCACTGTTCAAT
TATTTTAGGATGACTGGATATATATTACCTGATGTGAAAAGTCACATCGAATATACGAAT
ATAGATTGATAGCAAAACAAATTGCAGATTCCGTCTATAAATAAAGAGACGAATTTATTA
TTTAATTAATCCATCATTAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12678#0      CCCCTTTCTCGCGAAGAGAACGACGCACGCAGGCGTCGCCGTCGGCGAGCGGCGGCGGCG 60
consensus_12678#1      ------------------------------------------------------------
                                                                                   

consensus_12678#0      GACGGTGGACGGCGCGTGCGTAGCGAGCAGGGTGCGTGAGGACGGAGCTAAGCTAGCTGC 120
consensus_12678#1      ------------------------------------------------------------
                                                                                   

consensus_12678#0      TGACTAGAAGGTGATGCAACCACTCGAGCACAGAGAATATTGAGTGGATTCCTCCCTCCT 180
consensus_12678#1      ------------------------------------------------------------
                                                                                   

consensus_12678#0      CGCCCTCTGCTCGACGGGCGGTGCGTTTCTCTGTCGCTCCCATCCCCAGCCTCCACCTCC 240
consensus_12678#1      ------------------------------------------------------------
                                                                                   

consensus_12678#0      GCCTTGCTTCTCCTGAAATCCGGCCGTCCAGATCTCTGCCGCCGCAGCACCGCTCCACTC 300
consensus_12678#1      ------------------------------------------------------------
                                                                                   

consensus_12678#0      CGAGCTCCGGCGAACAGCCGGCAAATCCTAAACCCTAGACAGTGAGGGGTTGGAGCGGCG 360
consensus_12678#1      ------------------------------------------------------------
                                                                                   

consensus_12678#0      CCCGCCGCGGCGGACCGGACTGGCGGAGGGCGGGCGATTCGCGCGACGGCCGGCGTGTGC 420
consensus_12678#1      ------------------------------------------------------------
                                                                                   

consensus_12678#0      GGCGGCGACTGCGGGTCTGCGGCGCGGCGGCGGGTGCGGCTTGGCGTTGGCGGCCGGGTG 480
consensus_12678#1      ------------------------------------------------------------
                                                                                   

consensus_12678#0      GCCGGGGTTAGTAAAGGAAGAGGAAGAAGCTGAGCGCCAGATACCAGGCCGCCCACAAGG 540
consensus_12678#1      ------------------------------------------------------------
                                                                                   

consensus_12678#0      ACCCACTGCTGGACTTCAACGACTGGAGGAAGAAAGGAGGCGTGCCCGAGGTGAAGCGGT 600
consensus_12678#1      ------------------------------------------------------------
                                                                                   

consensus_12678#0      TTGCAGAAGCATAACAGCAGTCTAGCTTGACAACAATGTCAGTCCTTCGCTCCATTCTCC 660
consensus_12678#1      ------------------------------------------------------------
                                                                                   

consensus_12678#0      CGACAGTAGCAAGAAACAATGGTTGGAGATGCTTTGCTACTGGGTTTCCTTCCGATACTA 720
consensus_12678#1      ------------------------------------------------------------
                                                                                   

consensus_12678#0      TAGCAGAGCTCAATAAGGAAATGGAATCTGTGTTTGGTGAATCTCCTTCACCCAGTCCTT 780
consensus_12678#1      ------------------------------------------------------------
                                                                                   

consensus_12678#0      TAGGTTCAACTCCTCAGCAACCAGCAAGGCCCACTAATGGATCAGGGGATGGACAACCAA 840
consensus_12678#1      -------------------------AAGGCCCACTAATGGATCAGGGGATGGACAACCAA 35
                                                ***********************************

consensus_12678#0      TGCTTACCCATACTGATAGCAGTGGCCAGGCAAAGATGGTTGATGTCTCATCCAAGCATG 900
consensus_12678#1      TGCTTACCCATACTGATAGCAGTGGCCAGGCAAAGATGGTTGATGTCTCATCCAAGCATG 95
                       ************************************************************

consensus_12678#0      ACAGCACAAGAGTTGCTATAGCCACATGCAGGGTCTTGCTAGGCCAGGAGGCATTTGATT 960
consensus_12678#1      ACAGCACAAGAGTTGCTATAGCCACATGCAGGGTCTTGCTAGGCCAGGAGGCATTTGATT 155
                       ************************************************************

consensus_12678#0      TGGTAGCATCAAACAAGATTGCCAAAGGAGATGTTCTAACTGTTGCAAAGATTGCTGGAA 1020
consensus_12678#1      TGGTAGCATCAAACAAGATTGCCAAAGGAGATGTTCTAACTGTTGCAAAGATTGCTGGAA 215
                       ************************************************************

consensus_12678#0      TAACTGGTGCAAAGCAAACCAGCAACCTCATACCGCTGTGCCACAACCTTAATCTATCCC 1080
consensus_12678#1      TAACTGGTGCAAAGCAAACCAGCAACCTCATACCGCTGTGCCACAACCTTAATCTATCCC 275
                       ************************************************************

consensus_12678#0      ATGTTCGTGTTGATCTTACTCTTAACGAAGAAGATTCTAGTGTTATGATAGAAGGAGAAG 1140
consensus_12678#1      ATGTTCGTGTTGATCTTACTCTTAACGAAGAAGATTCTAGTGTTATGATAGAAGGAGAAG 335
                       ************************************************************

consensus_12678#0      CTTCAACCAGTGGCAAGACAGGGGTTGAGATGGAAGCAATGACAGCAGTTGCCATTGCTG 1200
consensus_12678#1      CTTCAACCAGTGGCAAGACAGGGGTTGAGATGGAAGCAATGACAGCAGTTGCCATTGCTG 395
                       ************************************************************

consensus_12678#0      GTCTCACAGTCTATGACATGTGCAAAGCTGCTTCAAAGAACATATGCATAACAGATATCT 1260
consensus_12678#1      GTCTCACAGTCTATGACATGTGCAAAGCTGCTTCAAAGAACATATGCATAACAGATATCT 455
                       ************************************************************

consensus_12678#0      GTCTCCAGCACAAATCTGGTGGAAAGAGTGGAAGCTGGTCCAGAAGTTAGACATTTATGT 1320
consensus_12678#1      GTCTCCAGCACAAATCTGGTGGAAAGAGTGGAAGCTGGTCCAGAAGTTAGACATTTATGT 515
                       ************************************************************

consensus_12678#0      GAATCACAAGAATGAATTGGGTACCAAATTTCATAACCACCATACCAATAGGTTCTGAGG 1380
consensus_12678#1      GAATCACAAGAATGAATTGGGTACCAAATTTCATAACCACCATACCAATAGGTTCTGAGG 575
                       ************************************************************

consensus_12678#0      CTTCAATAAATGTTTGTTGGAATATTTTTACTTCTAGTAATCGGATTAATTTTACTCTCT 1440
consensus_12678#1      CTTCAATAAATGTTTGTTGGAATATTTTTACTTCTAGTAATCGGATTAATTTTACTCTCT 635
                       ************************************************************

consensus_12678#0      AATATCGCACAATGCACTGTTCAATTATTTTAGGATGACTGGATATATATTACCTGATGT 1500
consensus_12678#1      AATATCGCACAATGCACTGTTCAATTATTTTAGGATGACTGGATATATATTACCTGATGT 695
                       ************************************************************

consensus_12678#0      GAAATG---CATCTTTTCCCTGA------------------------------------- 1520
consensus_12678#1      GAAAAGTCACATCGAATATACGAATATAGATTGATAGCAAAACAAATTGCAGATTCCGTC 755
                       **** *   ****   *    **                                     

consensus_12678#0      ---------------------------------------------
consensus_12678#1      TATAAATAAAGAGACGAATTTATTATTTAATTAATCCATCATTAG 800