cluster # 12739

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 12739 cluster # 12739 Sequences # 11 consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12739#0 length = 1538 sequences # 6
consensus_12739#1 length = 521 sequences # 1

consensus_12739#2 length = 504 sequences # 2
consensus_12739#3 length = 491 sequences # 1
consensus_12739#4 length = 434 sequences # 1

consensusID : consensus_12739#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1538
fasta sequence

                              [AGGGGAGGAGCGGCGATCTCGTCGGCGACGACGACGTCGAGGTCGAGGCGGTGGCGGAGGAGCATGGCCGACGGTCAGGAGGACGCCGCGGGTCTGGACGATGACCTTGTTCTCGAGGATGAGCTGCGAGGTCGAGAAGAGGGCGAAGACGGCGGCGGCGGCGGCGGCGAGGAAGAGGAGGAGGACGACGTCGACGGCCTC-GCCAGCTTCCTCGAATC-GGAGATCCTCTCTGGATCTAG-CGGCGACGACCCTA-CCGGTCGGGAGGAAGGGGATGAGAAGGAGAAGCAG-TT-AGGAGATGATGCGAAG-AACAATAAGAGGAAGCAGGAGTCTGAATCTGATGGGGATA-GCGGCAGCGGGGAGGAGCA-GAACAAGAGGGTGAGGAGAGCA-AAGGGGAAAGAGAAGGACGTGGCGTCG-GTGGCGCCTC-AGATCGAT-AGCGGCATGTT-CTGCA-ATATCCCGCCGGAGT-TGTTCTTGCAGATATTCAAGTTCCTCTCATCGGAGGATCTCATCTCCTGCGCCCTCGTCTGCCGCTTCATGAACGTGGTTGCGTCCGACGAGACCCTCTGGCGCCGCCTGTATTGTATGCGGTGGGGCCTGTCATGCAATACCAAACTCAGGGAGTGCGCTTGGAAGAAACTCTACATCCAGCAAGATAGAGAGGATATGGTTGAGTTTGTGAGAAATACACCTACAGAATTCAAGGAGTATTATATCCAGATGCAGGCTTCAAAAAGGAGTCAAGCTCCCCTTCCCTCTGAAGTCAACGATGACAAGGTTATTCTTGATAAAACAATAGCCGATCAGGTGTCTAGCTGGAAAAGCAGCAGAGGCCTCACTGATGATGCGGTCAAGGGGCATTCTTGTTCTGGGAATACATGCTCTTACACCCAGATTGGTGATGCTTATATTTGTGAGAAGACAGGCCGTGTTCATGTTTGCGATGACGCTTGTCGTGAAT-TTGTCTTGGACCAGTCTAGTGGGCTGCTGCTTTGTACAATATCTGGGCACTGCTTTGAAAGGTGGTTGTGTCCTGATGATGAGTGGGATGCTGATGATGATACTGATCTACAACAAGCTGGTATGACCGATGAAGCAGAGCCATTTATGGGTTCTGGACGATTTGCACGCGCATATCAGTTGGGTTACAGCTGTGCTGATGAGAAGGAACTTGAATATGCCTTGAGGTTTTGCTGATAATTGGGATTGCCTAATCATACTGGCAACATGAAACCA-AGTTTTTGGTTTGCAAGGGAAATTATGGTCAGAAGGCTTGGTGCTATGTT--TTTTTTTTTTTTACCTAGTTTAGGTTTCTGGTATGTTCCTATGTGTACAACTCACGCACAAATATGAGACGGCTAAAATTCTGATCTGTTTTGATCAGTTGAGGAAGCTGTATATTGTTGTAATCTTCCTAAATTACAAGGTGCATGCTAGTAATAAAAGAAACCTTCTGTAATGCTCACTGTATTTGTTTTTGCGCTGTATTTGTATCGTTATGTTCTAATTGATGTCCAGCTTGCAAAGCATCAAGTTTTTAGTGT]

[+] EMBL AK059732             [AGGGGAGGAGCGGCGATCTCGTCGGCGACGACGACGTCGAGGTCGAGGCGGTGGCGGAGGAGCATGGCCGACGGTCAGGAGGACGCCGCGGGTCTGGACGATGACCTTGTTCTCGAGGATGAGCTGCGAGGTCGAGAAGAGGGCGAAGACGGCGGCGGCGGCGGCGGCGAGGAAGAGGAGGAGGACGACGTCGACGGCCTC GCCAGCTTCCTCGAATC GGAGATCCTCTCTGGATCTAG CGGCGACGACCCTA CCGGTCGGGAGGAAGGGGATGAGAAGGAGAAGCAG TT AGGAGATGATGCGAAG AACAATAAGAGGAAGCAGGAGTCTGAATCTGATGGGGATA GCGGCAGCGGGGAGGAGCA GAACAAGAGGGTGAGGAGAGCA AAGGGGAAAGAGAAGGACGTGGCGTCG GTGGCGCCTC AGATCGAT AGCGGCATGTT CTGCA ATATCCCGCCGGAGT TGTTCTTGCAGATATTCAAGTTCCTCTCATCGGAGGATCTCATCTCCTGCGCCCTCGTCTGCCGCTTCATGAACGTGGTTGCGTCCGACGAGACCCTCTGGCGCCGCCTGTATTGTATGCGGTGGGGCCTGTCATGCAATACCAAACTCAGGGAGTGCGCTTGGAAGAAACTCTACATCCAGCAAGATAGAGAGGATATGGTTGAGTTTGTGAGAAATACACCTACAGAATTCAAGGAGTATTATATCCAGATGCAGGCTTCAAAAAGGAGTCAAGCTCCCCTTCCCTCTGAAGTCAACGATGACAAGGTTATTCTTGATAAAACAATAGCCGATCAGGTGTCTAGCTGGAAAAGCAGCAGAGGCCTCACTGATGATGCGGTCAAGGGGCATTCTTGTTCTGGGAATACATGCTCTTACACCCAGATTGGTGATGCTTATATTTGTGAGAAGACAGGCCGTGTTCATGTTTGCGATGACGCTTGTCGTGAAT TTGTCTTGGACCAGTCTAGTGGGCTGCTGCTTTGTACAATATCTGGGCACTGCTTTGAAAGGTGGTTGTGTCCTGATGATGAGTGGGATGCTGATGATGATACTGATCTACAACAAGCTGGTATGACCGATGAAGCAGAGCCATTTATGGGTTCTGGACGATTTGCACGCGCATATCAGTTGGGTTACAGCTGTGCTGATGAGAAGGAACTTGAATATGCCTTGAGGTTTTGCTGATAATTGGGATTGCCTAATCATACTGGCAACATGAAACCA AGTTTTTGGTTTGCAAGGGAAATTATGGTCAGAAGGCTTGGTGCTATGTT  TTTTTTTTTTTTACCTAGTTTAGGTTTCTGGTATGTTCCTATGTGTACAACTCACGCACAAATATGAGACGGCTAAAATTCTGATCTGTTTTGA                                                                                                                                                                    ]
[+] EMBL AK103683             [                   CGTCGGCGACGACGACGTCGAGGTCGAGGCGGTGGCGGAGGAGCATGGCCGACGGTCAGGAGGACGCCGCGGGTCTGGACGATGACCTTGTTCTCGAGGATGAGCTGCGAGGTCGAGAAGAGGGCGAAGACGGCGGCGGCGGCGGCGGCGAGGAAGAGGAGGAGGACGACGTCGACGGCCTC GCCAGCTTCCTCGAATC GGAGATCCTCTCTGGATCTAG CGGCGACGACCCTA CCGGTCGGGAGGAAGGGGATGAGAAGGAGAAGCAG TT AGGAGATGATGCGAAG AACAATAAGAGGAAGCAGGAGTCTGAATCTGATGGGGATA GCGGCAGCGGGGAGGAGCA GAACAAGAGGGTGAGGAGAGCA AAGGGGAAAGAGAAGGACGTGGCGTCG GTGGCGCCTC AGATCGAT AGCGGCATGTT CTGCA ATATCCCGCCGGAGT TGTTCTTGCAGATATTCAAGTTCCTCTCATCGGAGGATCTCATCTCCTGCGCCCTCGTCTGCCGCTTCATGAACGTGGTTGCGTCCGACGAGACCCTCTGGCGCCGCCTGTATTGTATGCGGTGGGGCCTGTCATGCAATACCAAACTCAGGGAGTGCGCTTGGAAGAAACTCTACATCCAGCAAGATAGAGAGGATATGGTTGAGTTTGTGAGAAATACACCTACAGAATTCAAGGAGTATTATATCCAGATGCAGGCTTCAAAAAGGAGTCAAGCTCCCCTTCCCTCTGAAGTCAACGATGACAAGGTTATTCTTGATAAAACAATAGCCGATCAGGTGTCTAGCTGGAAAAGCAGCAGAGGCCTCACTGGTGATGCGGTCAAGGGGCATTCTTGTTCTGGGAATACATGCTCTTACACCCAGATTGGTGATGCTTATATTTGTGAGAAGACAGGCCGTGTTCATGTTTGCGATGACGCTTGTCGTGAAT TTGTCTTGGACCAGTCTAGTGGGCTGCTGCTTTGTACAATATCTGGGCACTGCTTTGAAAGGTGGTTGTGTCCTGATGATGAGTGGGATGCTGATGATGATACTGATCTACAACAAGCTGGTATGACCGATGAAGCAGAGCCATTTATGGGTTCTGGACGATTTGCACGCGCATATCAGTTGGGTTACAGCTGTGCTGATGAGAAGGAACTTGAATATGCCTTGAGGTTTTGCTGATAATTGGGATTGCCTAATCATACTGGCAACATGAAACCA AGTTTTTGGTTTGCAAGGGAAATTATGGTCAGAAGGCTT                                                                                                                                                                                                                                                                               ]
[+] EMBL AK070881             [                                                                                                                              CGAGGTCGAGAAGAGGGCGAAGACGGCGGCGGCGGCGGCGGCGAGGAAGAGGAGGAGGACGACGTCGACGGCCTC GCCAGCTTCCTCGAATC GGAGATCCTCTCTGGATCTAG CGGCGACGACCCTA CCGGTCGGGAGGAAGGGGATGAGAAGGAGAAGCAG TT AGGAGATGATGCGAAG AACAATAAGAGGAAGCAGGAGTCTGAATCTGATGGGGATA GCGGCAGCGGGGAGGAGCA GAACAAGAGGGTGAGGAGAGCA AAGGGGAAAGAGAAGGACGTGGCGTCG GTGGCGCCTC AGATCGAT AGCGGCATGTT CTGCA ATATCCCGCCGGAGT TGTTCTTGCAGATATTCAAGTTCCTCTCATCGGAGGATCTCATCTCCTGCGCCCTCGTCTGCCGCTTCATGAACGTGGTTGCGTCCGACGAGACCCTCTGGCGCCGCCTGTATTGTAAGCGGTGGGGCCTGTCATGCAATACCAAACTCAGGGAGTGCGCTTGGAAGAAACTCTACATCCAGCAAGATAGAGAGGATATGGTTGAGTTTGTGAGAAATACACCTACAGAATTCAAGGAGTATTATATCCAGATGCAGGCTTCAAAAAGGAGTCAAGCTCCCCTTCCCTCTGAAGTCAACGATGACAAGGTTATTCTTGATAAAACAATAGCCGATCAGGTGTCTAGCTGGAAAAGCAGCAGAGGCCTCACTGATGATGCGGTCAAGGGGCATTCTTGTTCTGGGAATACATGCTCTTACACCCAGATTGGTGATGCTTATATTTGTGAGAAGACAGGCCGTGTTCATGTTTGCGATGACGCTTGTCGTGAAT TTGTCTTGGACCAGTCTAGTGGGCTGCTGCTTTGTACAATATCTGGGCACTGCTTTGAAAGGTGGTTGTGTCCTGATGATGAGTGGGATGCTGATGATGATACTGATCTACAACAAGCTGGTATGACCGATGAAGCAGAGCCATTTATGGGTTCTGGACGATTTGCACGCGCATATCAGTTGGGTTACAGCTGTGCTGATGAGAAGGAACTTGAATATGACTTGAGGTTTTGCTGATAATTGGGATTGCCTAATCATACTGGCAACATGAAACCA AGTTTTTGGTTTGCAAGGGAAATTATGGTCAGAAGGCTTGGTGCTATGTTTATTTTTTTTTTTTACCTAGTTTAGGTTTCTGGTATGTTCCTATGTGTACAACTCACGCACAAATATGAGACGGCTAAAATTCTGATCTGTTTTGATCAGTTGAGGAAGCTGTATATTGTTGTAATCTTCCTAAATTACAAGGTGCATGCTAGTAATAAAAGAAACCTTCTGTAATGCTCACTGTATTTGTTTTTGCGCTGTATTTGTATCGTTATGTTCTAATTGATGTCCAGCTTGCAAAGCATCAAGTTTTTAGTGT]
[+] EMBL CF312145             [                                                                                                                                                                                                    GCCTC GCCAGCTTCCTCGAATC GGAGATCCTCTCTGGATCTAG CGGCGACGACCCTA CCGGTCGGGAGGAAGGGGATGAGAAGGAGAAGCAG TT AGGAGATGATGCGAAG AACAATAAGAGGAAGCAGGAGTCTGAATCTGATGGGGATA GCGGCAGCGGGGAGGAGCA GAACAAGAGGGTGAGGAGAGCA AAGGGGAAAGAGAAGGACGTGGCGTCG GTGGCGCCTC AGATCGAT AGCGGCATGTT CTGCA ATATCCCGCCGGAGT TGTTCTTGCAGATATTCAAGTTCCTCTCATCGGAGGATCTCATCTCCTGCGCCCTCGTCTGCCGCTTCATGAACGTGGTTGCGTCCGACGAGACCCTCTGGCGCCGCCTGTATTGTATGCGGTGGGGCCTGTCATGCAATACCAAACTCAGGGAGTGCGCTTGGAAGAAACTCTACATCCAGCAAGATAGAGAGGATATGGTTGAGTTTGTGAGAAATACACCTACAGAATTCAAGGAGTATTATA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AU225747             [                                                                                                                                                                                                    GCCGCTGCCAGCTTCCTCGAATCAGGAGATCCTCTCTGGATCTAGACGGCGACGACCCTAGCCGGTCGGGAGGAAGGGGATGAGAAGGAGAAGCAGATTGAGGAGATGATGCGAAGTAACAATAAGAGGAAGCAGGAGTCTGAATCTGATGGGGATAGGCGGCAGCGGGGAGGAGCAGGAACAAGAGGGTGAGGAGAGCAGAAGGGGAAAGAGAAGGACGTGGCGTCGTGTGGCGCCTCTAGATCGATAAGCGGCATGTTGCTGCATATATCCCGCCGGAGTCTGTTCTAGCAGATATTCAAGTGCCTCTCATCGGAGGATCTCATCTCCTGCGCCCTCGTCTGCCGCATCATGAACGTGGTTGCGTACGACGAGACCCTCTGGCGCCGCCTGTATag                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BM420015             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     gGCGATGACGCTTGTCGTGAATGTTGTCTTGGACCAGTCTAGTGGGCTGCTGCTTTGTACAATATCTGGGCACTGCTTTGAAAGGTGGTTGTGTCCTGATGATGAGTGGGATGCTGATGATGATACTGATCTACAACAAGCTGGTATGACCGATGAAGCAGAGCCATTTATGGGTTCTGGACGATTTGCACGCGCATATCAGTTGGGTTACAGCTGTGCTGATGAGAAGGAACTTGAATATGCCTTGAGGTTTTGCTGATAATTGGGATTGCCTAATCATACTGGCAACATGAAACCACAGTTTTTGGTTGGCAAGGGAAATTATGGTCAGAAGGCTTGGTGCTATG T  TTTTTTTTTTTTACCTAGTTTAGGTTTCTGGTATGTTCCTATGTGTACAACTCACGCACAAATATGAGACGGCTAAATTTCTGATCTGTTTGGATCA TTGAGGAACCTGTATATTGTTGTAATCTTCCTAAATTACAAGGTGCATGCTAGTAATAAAAGAAACCTTCTGTAAaaaaaaaa                                                                             ]




>consensus_12739#0
AGGGGAGGAGCGGCGATCTCGTCGGCGACGACGACGTCGAGGTCGAGGCGGTGGCGGAGG
AGCATGGCCGACGGTCAGGAGGACGCCGCGGGTCTGGACGATGACCTTGTTCTCGAGGAT
GAGCTGCGAGGTCGAGAAGAGGGCGAAGACGGCGGCGGCGGCGGCGGCGAGGAAGAGGAG
GAGGACGACGTCGACGGCCTCGCCAGCTTCCTCGAATCGGAGATCCTCTCTGGATCTAGC
GGCGACGACCCTACCGGTCGGGAGGAAGGGGATGAGAAGGAGAAGCAGTTAGGAGATGAT
GCGAAGAACAATAAGAGGAAGCAGGAGTCTGAATCTGATGGGGATAGCGGCAGCGGGGAG
GAGCAGAACAAGAGGGTGAGGAGAGCAAAGGGGAAAGAGAAGGACGTGGCGTCGGTGGCG
CCTCAGATCGATAGCGGCATGTTCTGCAATATCCCGCCGGAGTTGTTCTTGCAGATATTC
AAGTTCCTCTCATCGGAGGATCTCATCTCCTGCGCCCTCGTCTGCCGCTTCATGAACGTG
GTTGCGTCCGACGAGACCCTCTGGCGCCGCCTGTATTGTATGCGGTGGGGCCTGTCATGC
AATACCAAACTCAGGGAGTGCGCTTGGAAGAAACTCTACATCCAGCAAGATAGAGAGGAT
ATGGTTGAGTTTGTGAGAAATACACCTACAGAATTCAAGGAGTATTATATCCAGATGCAG
GCTTCAAAAAGGAGTCAAGCTCCCCTTCCCTCTGAAGTCAACGATGACAAGGTTATTCTT
GATAAAACAATAGCCGATCAGGTGTCTAGCTGGAAAAGCAGCAGAGGCCTCACTGATGAT
GCGGTCAAGGGGCATTCTTGTTCTGGGAATACATGCTCTTACACCCAGATTGGTGATGCT
TATATTTGTGAGAAGACAGGCCGTGTTCATGTTTGCGATGACGCTTGTCGTGAATTTGTC
TTGGACCAGTCTAGTGGGCTGCTGCTTTGTACAATATCTGGGCACTGCTTTGAAAGGTGG
TTGTGTCCTGATGATGAGTGGGATGCTGATGATGATACTGATCTACAACAAGCTGGTATG
ACCGATGAAGCAGAGCCATTTATGGGTTCTGGACGATTTGCACGCGCATATCAGTTGGGT
TACAGCTGTGCTGATGAGAAGGAACTTGAATATGCCTTGAGGTTTTGCTGATAATTGGGA
TTGCCTAATCATACTGGCAACATGAAACCAAGTTTTTGGTTTGCAAGGGAAATTATGGTC
AGAAGGCTTGGTGCTATGTTTTTTTTTTTTTTACCTAGTTTAGGTTTCTGGTATGTTCCT
ATGTGTACAACTCACGCACAAATATGAGACGGCTAAAATTCTGATCTGTTTTGATCAGTT
GAGGAAGCTGTATATTGTTGTAATCTTCCTAAATTACAAGGTGCATGCTAGTAATAAAAG
AAACCTTCTGTAATGCTCACTGTATTTGTTTTTGCGCTGTATTTGTATCGTTATGTTCTA
ATTGATGTCCAGCTTGCAAAGCATCAAGTTTTTAGTGT

consensusID : consensus_12739#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 521
fasta sequence

                              [TTAACCTCAGACCAATACCTTTTGTATGCACATCTTCCTTTTGTTTGTACTTTTATATTATTGGATCCCATAGTAGTGTGTGGTCCCTGTACCATCGGTGATTTTAGCTGTGTTTAGAATGCATAAGTCGTTTGTTTCATTACCTTGAATTACTGACTTGTGCTCTGATTCTGAACAGCACGCGCATATCAGTTGGGTTACAGCTGTGCTGATGAGAAGGAACTTGAATATCCCTTGAGGTTTTGCTGATAATTGGGATTGCCTAATCATACTGGCAACATGAAACCCAGTTTTTGGTTGGCAAGGGAAATTATGGTCAGAAGGCTTGGTGCTATGTTTTTTTTTTTTTTACCTAGTTTAGGTTTCTGGTATGTTCCTATGTGTACAACTCACGCACAAATATGAGACGGCTAAAATTCTGATCTGTTTTGATCAGTTGAGGAAGCTGTATATTGTTGTAATCTTCCTAAATTACCAGGTGCATGCTAGTAATAAAAGAAACCTTCTGTAATGCTCAAAAA]

[+] EMBL BI812010             [TTAACCTCAGACCAATACCTTTTGTATGCACATCTTCCTTTTGTTTGTACTTTTATATTATTGGATCCCATAGTAGTGTGTGGTCCCTGTACCATCGGTGATTTTAGCTGTGTTTAGAATGCATAAGTCGTTTGTTTCATTACCTTGAATTACTGACTTGTGCTCTGATTCTGAACAGCACGCGCATATCAGTTGGGTTACAGCTGTGCTGATGAGAAGGAACTTGAATATCCCTTGAGGTTTTGCTGATAATTGGGATTGCCTAATCATACTGGCAACATGAAACCCAGTTTTTGGTTGGCAAGGGAAATTATGGTCAGAAGGCTTGGTGCTATGTTTTTTTTTTTTTTACCTAGTTTAGGTTTCTGGTATGTTCCTATGTGTACAACTCACGCACAAATATGAGACGGCTAAAATTCTGATCTGTTTTGATCAGTTGAGGAAGCTGTATATTGTTGTAATCTTCCTAAATTACCAGGTGCATGCTAGTAATAAAAGAAACCTTCTGTAATGCTCAAAAA]




>consensus_12739#1
TTAACCTCAGACCAATACCTTTTGTATGCACATCTTCCTTTTGTTTGTACTTTTATATTA
TTGGATCCCATAGTAGTGTGTGGTCCCTGTACCATCGGTGATTTTAGCTGTGTTTAGAAT
GCATAAGTCGTTTGTTTCATTACCTTGAATTACTGACTTGTGCTCTGATTCTGAACAGCA
CGCGCATATCAGTTGGGTTACAGCTGTGCTGATGAGAAGGAACTTGAATATCCCTTGAGG
TTTTGCTGATAATTGGGATTGCCTAATCATACTGGCAACATGAAACCCAGTTTTTGGTTG
GCAAGGGAAATTATGGTCAGAAGGCTTGGTGCTATGTTTTTTTTTTTTTTACCTAGTTTA
GGTTTCTGGTATGTTCCTATGTGTACAACTCACGCACAAATATGAGACGGCTAAAATTCT
GATCTGTTTTGATCAGTTGAGGAAGCTGTATATTGTTGTAATCTTCCTAAATTACCAGGT
GCATGCTAGTAATAAAAGAAACCTTCTGTAATGCTCAAAAA

consensusID : consensus_12739#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 504
fasta sequence

                              [ATGCACATCTTCCGTTTTGTTTGTACTTTTATATTATTGGATTCCAATAGTAGTGTGTGGTGCCACTGTACCAATCGGTGATTGTAGGCTGTGTTTAGAATGCATAAGTCGTTTGTTTCATTACATTGAATTACTGACTTGTGCTCTGATTCTGAACAGCACGCGCATATCAGTTGGGTTACAGCTGTGCTGATGAGAAGGAACTTGAATATGCCTTGAGGTTTTGCTGATAATTGGGATTGCCTAATCATACTGGCAACATGAAACCAAGTTTTTGGTTTGCAAGGGAAATTATGGTCAGAAGGCTTGGTGCTATGTTTTTTTTTTTTTTACCTAGTTTAGGTTTCTGGTATGTTCCTATGTGTACAACTCACGCACAAATATGAGACGGCTAAAATTCTGATCTGTTTTGATCAGTTGAGGAAGCTGTATATTGTTGTAATCTTCCTAAATTACAAGGTGCATGCTAGTAATAAAAGAAACCTTCTGTAAAAAAAAAAAAAA]

[+] EMBL CF314152             [ATGCACATCTTCCGTTTTGTTTGTACTTTTATATTATTGGATTCCAATAGTAGTGTGTGGTGCCACTGTACCAATCGGTGATTGTAGGCTGTGTTTAGAATGCATAAGTCGTTTGTTTCATTACATTGAATTACTGACTTGTGCTCTGATTCTGAACAGCACGCGCATATCAGTTGGGTTACAGCTGTGCTGATGAGAAGGAACTTGAATATGCCTTGAGGTTTTGCTGATAATTGGGATTGCCTAATCATACTGGCAACATGAAACCAAGTTTTTGGTTTGCAAGGGAAATTATGGTCAGAAGGCTTGGTGCTATGTTTTTTTTTTTTTTACCTAGTTTAGGTTTCTGGTATGTTCCTATGTGTACAACTCACGCACAAATATGAGACGGCTAAAATTCTGATCTGTTTTGATCAGTTGAGGAAGCTGTATATTGTTGTAATCTTCCTAAATTACAAGGTGCATGCTAGTAATAAAAGAAACCTTCTGTAAAAAAAAAAAAAA]
[+] EMBL CF328975             [                                                                                                                                                                                                                                                                                                                                                                                     CGCACAAATATGAGACGGCTAAAATTCTGATCTGTTTCGATCAGTTGAGGAAGCTGTATATTGTTGTAATCTTCCTAAATTACAAGGTGCATGCTAGTAATAAAAa                         ]




>consensus_12739#2
ATGCACATCTTCCGTTTTGTTTGTACTTTTATATTATTGGATTCCAATAGTAGTGTGTGG
TGCCACTGTACCAATCGGTGATTGTAGGCTGTGTTTAGAATGCATAAGTCGTTTGTTTCA
TTACATTGAATTACTGACTTGTGCTCTGATTCTGAACAGCACGCGCATATCAGTTGGGTT
ACAGCTGTGCTGATGAGAAGGAACTTGAATATGCCTTGAGGTTTTGCTGATAATTGGGAT
TGCCTAATCATACTGGCAACATGAAACCAAGTTTTTGGTTTGCAAGGGAAATTATGGTCA
GAAGGCTTGGTGCTATGTTTTTTTTTTTTTTACCTAGTTTAGGTTTCTGGTATGTTCCTA
TGTGTACAACTCACGCACAAATATGAGACGGCTAAAATTCTGATCTGTTTTGATCAGTTG
AGGAAGCTGTATATTGTTGTAATCTTCCTAAATTACAAGGTGCATGCTAGTAATAAAAGA
AACCTTCTGTAAAAAAAAAAAAAA

consensusID : consensus_12739#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 491
fasta sequence

                              [TGCTTTGTACAATATTTGGGCACTGCTTTGAAAGGTGGTTGTGTCCTGATGATGAGTGGGATGCTGATGGTGATACTGATCTACAACAAGCTGGTATGACCGATGAAGCAGAGCCATTTATGGGTTTTGGACGATTTGCACGCGCATATCAGTTGGGTTACAGCTGTGCTGATGAGAAGGAACTTGAATATGCCTTGAGGTTTTGCTGATAATTGGGATTGCCTAATCATACTGGCAACATGAAACCAAGTTTTTGGTTTGCAAGGGAAATTATGGTCAGAAGGCTTGGGGCTATGTTTTTTTTTTTTTACCTAGTTTAGGTTTCTGGTATGTTCCTATGTGTACAACTCACGCCCAAATATGAGACGGCTAAAATTCTGATCTGTTTTGATCAGTTGAGGAAGCTGTATATTGTTGTAATCTTCCTAAATTACAAGGTGCATGCTAGTAATAAAAGAAACCTTCTGTAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CF312146             [TGCTTTGTACAATATTTGGGCACTGCTTTGAAAGGTGGTTGTGTCCTGATGATGAGTGGGATGCTGATGGTGATACTGATCTACAACAAGCTGGTATGACCGATGAAGCAGAGCCATTTATGGGTTTTGGACGATTTGCACGCGCATATCAGTTGGGTTACAGCTGTGCTGATGAGAAGGAACTTGAATATGCCTTGAGGTTTTGCTGATAATTGGGATTGCCTAATCATACTGGCAACATGAAACCAAGTTTTTGGTTTGCAAGGGAAATTATGGTCAGAAGGCTTGGGGCTATGTTTTTTTTTTTTTACCTAGTTTAGGTTTCTGGTATGTTCCTATGTGTACAACTCACGCCCAAATATGAGACGGCTAAAATTCTGATCTGTTTTGATCAGTTGAGGAAGCTGTATATTGTTGTAATCTTCCTAAATTACAAGGTGCATGCTAGTAATAAAAGAAACCTTCTGTAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_12739#3
TGCTTTGTACAATATTTGGGCACTGCTTTGAAAGGTGGTTGTGTCCTGATGATGAGTGGG
ATGCTGATGGTGATACTGATCTACAACAAGCTGGTATGACCGATGAAGCAGAGCCATTTA
TGGGTTTTGGACGATTTGCACGCGCATATCAGTTGGGTTACAGCTGTGCTGATGAGAAGG
AACTTGAATATGCCTTGAGGTTTTGCTGATAATTGGGATTGCCTAATCATACTGGCAACA
TGAAACCAAGTTTTTGGTTTGCAAGGGAAATTATGGTCAGAAGGCTTGGGGCTATGTTTT
TTTTTTTTTACCTAGTTTAGGTTTCTGGTATGTTCCTATGTGTACAACTCACGCCCAAAT
ATGAGACGGCTAAAATTCTGATCTGTTTTGATCAGTTGAGGAAGCTGTATATTGTTGTAA
TCTTCCTAAATTACAAGGTGCATGCTAGTAATAAAAGAAACCTTCTGTAAAAAAAAAAAA
AAAAAAAAAAA

consensusID : consensus_12739#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 434
fasta sequence

                              [ATAAGTCGTTTGTTTCATTACATTGAATTACTGACTTGGGGTTTGATTTTGAACAGCACGGGCAAATCAGTTGGGTTACAACTGTGCTGATTAAAAGGAACTTGAAAAAGCCCTGAGGTTTTGGTGAAAATTGGGATTGCCTAATCAAACTGGCAACATGAAACCAAGTTTTTGGTTTGCAAGGGAAATTATGGTCAAAAGGGTTGGGGCTATGTTTTTTTTTTTTTTACCTAGTTTAGGTTTTTGGGATGTTCCTATGGGGACAACTCACGCCCAAATATGAGACGGGTAAAATTTTGATTTGTTTTGATCAGTTGAGGAAACTGTAAATTGTTGTAATTTTCCTAAATTACAAGGGGCATGGTAGTAATAAAAAAAACCTTTTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAA]

[-] EMBL CF314151             [ATAAGTCGTTTGTTTCATTACATTGAATTACTGACTTGGGGTTTGATTTTGAACAGCACGGGCAAATCAGTTGGGTTACAACTGTGCTGATTAAAAGGAACTTGAAAAAGCCCTGAGGTTTTGGTGAAAATTGGGATTGCCTAATCAAACTGGCAACATGAAACCAAGTTTTTGGTTTGCAAGGGAAATTATGGTCAAAAGGGTTGGGGCTATGTTTTTTTTTTTTTTACCTAGTTTAGGTTTTTGGGATGTTCCTATGGGGACAACTCACGCCCAAATATGAGACGGGTAAAATTTTGATTTGTTTTGATCAGTTGAGGAAACTGTAAATTGTTGTAATTTTCCTAAATTACAAGGGGCATGGTAGTAATAAAAAAAACCTTTTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAA]




>consensus_12739#4
ATAAGTCGTTTGTTTCATTACATTGAATTACTGACTTGGGGTTTGATTTTGAACAGCACG
GGCAAATCAGTTGGGTTACAACTGTGCTGATTAAAAGGAACTTGAAAAAGCCCTGAGGTT
TTGGTGAAAATTGGGATTGCCTAATCAAACTGGCAACATGAAACCAAGTTTTTGGTTTGC
AAGGGAAATTATGGTCAAAAGGGTTGGGGCTATGTTTTTTTTTTTTTTACCTAGTTTAGG
TTTTTGGGATGTTCCTATGGGGACAACTCACGCCCAAATATGAGACGGGTAAAATTTTGA
TTTGTTTTGATCAGTTGAGGAAACTGTAAATTGTTGTAATTTTCCTAAATTACAAGGGGC
ATGGTAGTAATAAAAAAAACCTTTTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAA
AAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12739#1      ------------------------------------------------------------
consensus_12739#2      ------------------------------------------------------------
consensus_12739#4      ------------------------------------------------------------
consensus_12739#0      AGGGGAGGAGCGGCGATCTCGTCGGCGACGACGACGTCGAGGTCGAGGCGGTGGCGGAGG 60
consensus_12739#3      ------------------------------------------------------------
                                                                                   

consensus_12739#1      ------------------------------------------------------------
consensus_12739#2      ------------------------------------------------------------
consensus_12739#4      ------------------------------------------------------------
consensus_12739#0      AGCATGGCCGACGGTCAGGAGGACGCCGCGGGTCTGGACGATGACCTTGTTCTCGAGGAT 120
consensus_12739#3      ------------------------------------------------------------
                                                                                   

consensus_12739#1      ------------------------------------------------------------
consensus_12739#2      ------------------------------------------------------------
consensus_12739#4      ------------------------------------------------------------
consensus_12739#0      GAGCTGCGAGGTCGAGAAGAGGGCGAAGACGGCGGCGGCGGCGGCGGCGAGGAAGAGGAG 180
consensus_12739#3      ------------------------------------------------------------
                                                                                   

consensus_12739#1      ------------------------------------------------------------
consensus_12739#2      ------------------------------------------------------------
consensus_12739#4      ------------------------------------------------------------
consensus_12739#0      GAGGACGACGTCGACGGCCTCGCCAGCTTCCTCGAATCGGAGATCCTCTCTGGATCTAGC 240
consensus_12739#3      ------------------------------------------------------------
                                                                                   

consensus_12739#1      ------------------------------------------------------------
consensus_12739#2      ------------------------------------------------------------
consensus_12739#4      ------------------------------------------------------------
consensus_12739#0      GGCGACGACCCTACCGGTCGGGAGGAAGGGGATGAGAAGGAGAAGCAGTTAGGAGATGAT 300
consensus_12739#3      ------------------------------------------------------------
                                                                                   

consensus_12739#1      ------------------------------------------------------------
consensus_12739#2      ------------------------------------------------------------
consensus_12739#4      ------------------------------------------------------------
consensus_12739#0      GCGAAGAACAATAAGAGGAAGCAGGAGTCTGAATCTGATGGGGATAGCGGCAGCGGGGAG 360
consensus_12739#3      ------------------------------------------------------------
                                                                                   

consensus_12739#1      ------------------------------------------------------------
consensus_12739#2      ------------------------------------------------------------
consensus_12739#4      ------------------------------------------------------------
consensus_12739#0      GAGCAGAACAAGAGGGTGAGGAGAGCAAAGGGGAAAGAGAAGGACGTGGCGTCGGTGGCG 420
consensus_12739#3      ------------------------------------------------------------
                                                                                   

consensus_12739#1      ------------------------------------------------------------
consensus_12739#2      ------------------------------------------------------------
consensus_12739#4      ------------------------------------------------------------
consensus_12739#0      CCTCAGATCGATAGCGGCATGTTCTGCAATATCCCGCCGGAGTTGTTCTTGCAGATATTC 480
consensus_12739#3      ------------------------------------------------------------
                                                                                   

consensus_12739#1      ------------------------------------------------------------
consensus_12739#2      ------------------------------------------------------------
consensus_12739#4      ------------------------------------------------------------
consensus_12739#0      AAGTTCCTCTCATCGGAGGATCTCATCTCCTGCGCCCTCGTCTGCCGCTTCATGAACGTG 540
consensus_12739#3      ------------------------------------------------------------
                                                                                   

consensus_12739#1      ------------------------------------------------------------
consensus_12739#2      ------------------------------------------------------------
consensus_12739#4      ------------------------------------------------------------
consensus_12739#0      GTTGCGTCCGACGAGACCCTCTGGCGCCGCCTGTATTGTATGCGGTGGGGCCTGTCATGC 600
consensus_12739#3      ------------------------------------------------------------
                                                                                   

consensus_12739#1      ------------------------------------------------------------
consensus_12739#2      ------------------------------------------------------------
consensus_12739#4      ------------------------------------------------------------
consensus_12739#0      AATACCAAACTCAGGGAGTGCGCTTGGAAGAAACTCTACATCCAGCAAGATAGAGAGGAT 660
consensus_12739#3      ------------------------------------------------------------
                                                                                   

consensus_12739#1      ------------------------------------------------------------
consensus_12739#2      ------------------------------------------------------------
consensus_12739#4      ------------------------------------------------------------
consensus_12739#0      ATGGTTGAGTTTGTGAGAAATACACCTACAGAATTCAAGGAGTATTATATCCAGATGCAG 720
consensus_12739#3      ------------------------------------------------------------
                                                                                   

consensus_12739#1      ------------------------------------------------------------
consensus_12739#2      ------------------------------------------------------------
consensus_12739#4      ------------------------------------------------------------
consensus_12739#0      GCTTCAAAAAGGAGTCAAGCTCCCCTTCCCTCTGAAGTCAACGATGACAAGGTTATTCTT 780
consensus_12739#3      ------------------------------------------------------------
                                                                                   

consensus_12739#1      ------------------------------------------------------------
consensus_12739#2      ------------------------------------------------------------
consensus_12739#4      ------------------------------------------------------------
consensus_12739#0      GATAAAACAATAGCCGATCAGGTGTCTAGCTGGAAAAGCAGCAGAGGCCTCACTGATGAT 840
consensus_12739#3      ------------------------------------------------------------
                                                                                   

consensus_12739#1      ------------------------------------------------------------
consensus_12739#2      ------------------------------------------------------------
consensus_12739#4      ------------------------------------------------------------
consensus_12739#0      GCGGTCAAGGGGCATTCTTGTTCTGGGAATACATGCTCTTACACCCAGATTGGTGATGCT 900
consensus_12739#3      ------------------------------------------------------------
                                                                                   

consensus_12739#1      ----------------------------------TTAACCTCAGACCAATACCTTTTGTA 26
consensus_12739#2      -----------------------------------------------------------A 1
consensus_12739#4      ------------------------------------------------------------
consensus_12739#0      TATATTTGTGAGAAGACAGGCCGTGTTCATGTTTGCGATGACGCTTGTCGTGAATTTGTC 960
consensus_12739#3      ------------------------------------------------------------
                                                                                   

consensus_12739#1      TGCACATCTTCC-TTTTGTTTGTACTTT-TATATTATTGGATCCCA-TAGTAGTGTGTGG 83
consensus_12739#2      TGCACATCTTCCGTTTTGTTTGTACTTT-TATATTATTGGATTCCAATAGTAGTGTGTGG 60
consensus_12739#4      ------------------------------------------------------------
consensus_12739#0      TTGGACCAGTCTAGTGGGCTGCTGCTTTGTACAATATCTGGGCACTGCTTTGAAAGGTGG 1020
consensus_12739#3      ----------------------TGCTTTGTACAATATTTGGGCACTGCTTTGAAAGGTGG 38
                                                                                   

consensus_12739#1      TCCC--TGTACCA-TCGGTGAT-TTTAG-CTGTGTTTAGAATGCATAAGTCGTTTGTTTC 138
consensus_12739#2      TGCCACTGTACCAATCGGTGAT-TGTAGGCTGTGTTTAGAATGCATAAGTCGTTTGTTTC 119
consensus_12739#4      --------------------------------------------ATAAGTCGTTTGTTTC 16
consensus_12739#0      TTGTGTCCTGATGATGAGTGGGATGCTGATGATGATACTGATCTACAACAAGCTGGTATG 1080
consensus_12739#3      TTGTGTCCTGATGATGAGTGGGATGCTGATGGTGATACTGATCTACAACAAGCTGGTATG 98
                                                                   * **   * * ** * 

consensus_12739#1      ATTACCTTGAATTACTGACTTGTGCTCTGATTCTGAACAGCACGCGCATATCAGTTGGGT 198
consensus_12739#2      ATTACATTGAATTACTGACTTGTGCTCTGATTCTGAACAGCACGCGCATATCAGTTGGGT 179
consensus_12739#4      ATTACATTGAATTACTGACTTGGGGTTTGATTTTGAACAGCACGGGCAAATCAGTTGGGT 76
consensus_12739#0      ACCGATGAAGCAGAGCCATTTATGGGTTCTGGACGATTTGCACGCGCATATCAGTTGGGT 1140
consensus_12739#3      ACCGATGAAGCAGAGCCATTTATGGGTTTTGGACGATTTGCACGCGCATATCAGTTGGGT 158
                       *            *   * **  *   *      **   ***** *** ***********

consensus_12739#1      TACAGCTGTGCTGATGAGAAGGAACTTGAATATCCCTTGAGGTTTTGCTGATAATTGGGA 258
consensus_12739#2      TACAGCTGTGCTGATGAGAAGGAACTTGAATATGCCTTGAGGTTTTGCTGATAATTGGGA 239
consensus_12739#4      TACAACTGTGCTGATTAAAAGGAACTTGAAAAAGCCCTGAGGTTTTGGTGAAAATTGGGA 136
consensus_12739#0      TACAGCTGTGCTGATGAGAAGGAACTTGAATATGCCTTGAGGTTTTGCTGATAATTGGGA 1200
consensus_12739#3      TACAGCTGTGCTGATGAGAAGGAACTTGAATATGCCTTGAGGTTTTGCTGATAATTGGGA 218
                       **** ********** * ************ *  ** ********** *** ********

consensus_12739#1      TTGCCTAATCATACTGGCAACATGAAACCCAGTTTTTGGTTGGCAAGGGAAATTATGGTC 318
consensus_12739#2      TTGCCTAATCATACTGGCAACATGAAACCAAGTTTTTGGTTTGCAAGGGAAATTATGGTC 299
consensus_12739#4      TTGCCTAATCAAACTGGCAACATGAAACCAAGTTTTTGGTTTGCAAGGGAAATTATGGTC 196
consensus_12739#0      TTGCCTAATCATACTGGCAACATGAAACCAAGTTTTTGGTTTGCAAGGGAAATTATGGTC 1260
consensus_12739#3      TTGCCTAATCATACTGGCAACATGAAACCAAGTTTTTGGTTTGCAAGGGAAATTATGGTC 278
                       *********** ***************** *********** ******************

consensus_12739#1      AGAAGGCTTGGTGCTATGTTTTTTTTTTTTTTACCTAGTTTAGGTTTCTGGTATGTTCCT 378
consensus_12739#2      AGAAGGCTTGGTGCTATGTTTTTTTTTTTTTTACCTAGTTTAGGTTTCTGGTATGTTCCT 359
consensus_12739#4      AAAAGGGTTGGGGCTATGTTTTTTTTTTTTTTACCTAGTTTAGGTTTTTGGGATGTTCCT 256
consensus_12739#0      AGAAGGCTTGGTGCTATGTTTTTTTTTTTTTTACCTAGTTTAGGTTTCTGGTATGTTCCT 1320
consensus_12739#3      AGAAGGCTTGGGGCTATGTTTTTTTTTTTTT-ACCTAGTTTAGGTTTCTGGTATGTTCCT 337
                       * **** **** ******************* *************** *** ********

consensus_12739#1      ATGTGTACAACTCACGCACAAATATGAGACGGCTAAAATTCTGATCTGTTTTGATCAGTT 438
consensus_12739#2      ATGTGTACAACTCACGCACAAATATGAGACGGCTAAAATTCTGATCTGTTTTGATCAGTT 419
consensus_12739#4      ATGGGGACAACTCACGCCCAAATATGAGACGGGTAAAATTTTGATTTGTTTTGATCAGTT 316
consensus_12739#0      ATGTGTACAACTCACGCACAAATATGAGACGGCTAAAATTCTGATCTGTTTTGATCAGTT 1380
consensus_12739#3      ATGTGTACAACTCACGCCCAAATATGAGACGGCTAAAATTCTGATCTGTTTTGATCAGTT 397
                       *** * *********** ************** ******* **** **************

consensus_12739#1      GAGGAAGCTGTATATTGTTGTAATCTTCCTAAATTACCAGGTGCATGCTAGTAATAAAAG 498
consensus_12739#2      GAGGAAGCTGTATATTGTTGTAATCTTCCTAAATTACAAGGTGCATGCTAGTAATAAAAG 479
consensus_12739#4      GAGGAAACTGTAAATTGTTGTAATTTTCCTAAATTACAAGGGGCATGGTAGTAATAAAAA 376
consensus_12739#0      GAGGAAGCTGTATATTGTTGTAATCTTCCTAAATTACAAGGTGCATGCTAGTAATAAAAG 1440
consensus_12739#3      GAGGAAGCTGTATATTGTTGTAATCTTCCTAAATTACAAGGTGCATGCTAGTAATAAAAG 457
                       ****** ***** *********** ************ *** ***** *********** 

consensus_12739#1      AAACCTTCTGTAATGCTCAAAAA------------------------------------- 521
consensus_12739#2      AAACCTTCTGTAAAAAAAAAAAAAA----------------------------------- 504
consensus_12739#4      AAACCTTTTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAA-- 434
consensus_12739#0      AAACCTTCTGTAATGCTCACTGTATTTGTTTTTGCGCTGTATTTGTATCGTTATGTTCTA 1500
consensus_12739#3      AAACCTTCTGTAAAAAAAAAAAAAAAAAAAAAAA-------------------------- 491
                       ******* *****     *                                         

consensus_12739#1      --------------------------------------
consensus_12739#2      --------------------------------------
consensus_12739#4      --------------------------------------
consensus_12739#0      ATTGATGTCCAGCTTGCAAAGCATCAAGTTTTTAGTGT 1538
consensus_12739#3      --------------------------------------