cluster # 12799

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Oryza sativa
cluster # 12799 cluster # 12799 Sequences # 11 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12799#0 length = 2142 sequences # 9

consensus_12799#1 length = 582 sequences # 1
consensus_12799#2 length = 172 sequences # 1

consensusID : consensus_12799#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 2142
fasta sequence

                              [CCCGCCTCCGCCTCCTCTCGCCTCGCCTCCGCCACCCATGGCTTCTCGAAACCCTAGCCCCGCCTCCCTCTCCACGCCGCTCCTCTCCGACTCCATCTCGCCCACGCCCACCACCAACGGCCACGCGGGGCACCATAACCACGACGACGACGACGAGGAGTCGCCAACGGTGTGCGGCGGCGATGGCGGAGGAGGGGGGGACCCGTTCGCGTTCCCATCGGAGGATCGGCCGGCGTGGTGGTCGCCGCGGGGGGTGTCCCCGGCCGACCCGTTCCGCAACGGGACGCCGGGGTGGTGCGGGGCGTACGAGCTCGTGAGGGCGCTCGTGTGCGCGCCGGTGGCGGCGGCGAGGCTGGTGCTGTTCGGGCTCTCCATCGCGGTGGGGTACGCCGCCACGTGGGTGGCGCTCCGCGGGTGGGTCGACGTGCGGGAGCGGGCGGCGCAGGAGGGCGCCGGGCCCATGCCGGCGTGGCGCCGCCGCCTCATGTGGATCACGCGGATCTCCGCGCGCTGCATCCTCTTCTCCTTCGGATACCATTGGATAAGGAGGAAAGGAAAACCCGCGCCTAGAGAGCTTGCACCTATAGTTGTCTCAAATCATGTATCATACATAGAACCCATATACTTCTTCTATGAGCTGTTCCCGACAATCGTTTCTTCAGATTCTCATGATTCCATACCATTTGTTGGAACAATTATCCGAGCAATGCAGGTTATATATGTTGACAGATTCTCGCCAGCTTCAAGGAAGTCTGCTGTAAATGAAATAAAGAGAAAGGCGGCTTGCAATAGCTTCCCACGTGTCTTGTTATTCCCGGAAGGCACGACAACAAATGGAAGATTTCTGATTTCTTTCCAACATGGTGCATTCATACCTGGCTACCCTGTTCAACCTGTTATTGTGCGCTATCCACATGTGCACTTTGATCAATCATGGGGAAATATATCATTAGGAAAGCTCATGTTCAAGATGTTTACCCAGTTTCACAATTTCATGGAGGTAGAGTACCTCCCTGTTGTTTACCCACCTGAGATCAAGCAAGAGAATGCCCTTCATTTTGCAGAGAACACTAGCTATGCTATGGCACATGCACTTAATGTTATTCCAACCTCTTATTCATATGGGGATTCAATGATCATGGCTCGAGCAGTGGAAGATGGAAAGGTGAACTGCTCAAATTATATGGTGGAGATGGCTTGGGTAAAAGAAACATATGGTGTGAGCACATCAGAAGCAATGGCACTCTTGGAAGACTTTTTGTGTATGAGCCCAGACAAGGACGGACGTGTGAATGCGCAAGATTTTTGGGCTCATTTTGGCCTTAATTGCACCCCTCTTTGCAAGAAGATATTTCAGTACTTCGATTTTGAAGCCAAGGAATCCATCACATTCCGTCAGTTCTT-GATTGGATGTGCGCACCT-CAGGAAGCAGCCATCGTTTCAGGACGCCTGCGAAACCGCGTTTGAGAGGT-GTAGGAATCCCCTAACATCTCACATCGGCAGGGAGCAGCTCGCCGATGTCCTGCGGTCAAGCATGCTTGAGCTGATGACCGATAATGGGATGATGAAGCTGTTCAAGACGTTGGACGTCGACGATGACGACGGAATCAGCAAGGATGACCTGATGGCATCCCTTAGGAAGCTCCCCTTCATGATCGCGCTCTTCGCGGGCCGGATCAACGGGGAAGTCTACATCGAGATAGTTTGATCGACTGGATTGATCGCAGGGGAGAGCAAAAATGGTGGATGGGAGTTTGTAACGCGGTGGGAGACGACAGACCTCCGTCTGTTTTTAGAGGGATGGTTTCCAACCGCTTCACCGTCCATGTAGCTTTCTCAGGCGTGTTGGACTAAAGTGGCTAACCGGTATAGTGCGCAATTTTGTTTCATATCGTAAAAATATATATTTATATCCATAGAAAAGCTGTCGCGTGATGGCACGCTGGATTGTGCAATGTGGATATGATACTGTACAACATTGGTCCAACTGGGCGTGCACATAGAAACTCTTTTTTTGGTTTGGTTTGGTTTGGCTAACTGGATGGATGATTACAAACTCCTTTTTGGCTAACTGGATGGAAGTATCTGTTTCGTATCGTCCATCCCAATATCAATCAATATATGTCTTTAATTTCAAAAAAA]

[+] EMBL AK070744             [CCCGCCTCCGCCTCCTCTCGCCTCGCCTCCGCCACCCATGGCTTCTCGAAACCCTAGCCCCGCCTCCCTCTCCACGCCGCTCCTCTCCGACTCCATCTCGCCCACGCCCACCACCAACGGCCACGCGGGGCACCATAACCACGACGACGACGACGAGGAGTCGCCAACGGTGTGCGGCGGCGATGGCGGAGGAGGGGGGGACCCGTTCGCGTTCCCATCGGAGGATCGGCCGGCGTGGTGGTCGCCGCGGGGGGTGTCCCCGGCCGACCCGTTCCGCAACGGGACGCCGGGGTGGTGCGGGGCGTACGAGCTCGTGAGGGCGCTCGTGTGCGCGCCGGTGGCGGCGGCGAGGCTGGTGCTGTTCGGGCTCTCCATCGCGGTGGGGTACGCCGCCACGTGGGTGGCGCTCCGCGGGTGGGTCGACGTGCGGGAGCGGGCGGCGCAGGAGGGCGCCGGGCCCATGCCGGCGTGGCGCCGCCGCCTCATGTGGATCACGCGGATCTCCGCGCGCTGCATCCTCTTCTCCTTCGGATACCATTGGATAAGGAGGAAAGGAAAACCCGCGCCTAGAGAGCTTGCACCTATAGTTGTCTCAAATCATGTATCATACATAGAACCCATATACTTCTTCTATGAGCTGTTCCCGACAATCGTTTCTTCAGATTCTCATGATTCCATACCATTTGTTGGAACAATTATCCGAGCAATGCAGGTTATATATGTTGACAGATTCTCGCCAGCTTCAAGGAAGTCTGCTGTAAATGAAATAAAGAGAAAGGCGGCTTGCAATAGCTTCCCACGTGTCTTGTTATTCCCGGAAGGCACGACAACAAATGGAAGATTTCTGATTTCTTTCCAACATGGTGCATTCATACCTGGCTACCCTGTTCAACCTGTTATTGTGCGCTATCCACATGTGCACTTTGATCAATCATGGGGAAATATATCATTAGGAAAGCTCATGTTCAAGATGTTTACCCAGTTTCACAATTTCATGGAGGTAGAGTACCTCCCTGTTGTTTACCCACCTGAGATCAAGCAAGAGAATGCCCTTCATTTTGCAGAGAACACTAGCTATGCTATGGCACATGCACTTAATGTTATTCCAACCTCTTATTCATATGGGGATTCAATGATCATGGCTCGAGCAGTGGAAGATGGAAAGGTGAACTGCTCAAATTATATGGTGGAGATGGCTTGGGTAAAAGAAACATATGGTGTGAGCACATCAGAAGCAATGGCACTCTTGGAAGACTTTTTGTGTATGAGCCCAGACAAGGACGGACGTGTGAATGCGCAAGATTTTTGGGCTCATTTTGGCCTTAATTGCACCCCTCTTTGCAAGAAGATATTTCAGTACTTCGATTTTGAAGCCAAGGAATCCATCACATTCCGTCAGTTCTT GATTGGATGTGCGCACCT CAGGAAGCAGCCATCGTTTCAGGACGCCTGCGAAACCGCGTTTGAGAGGT GTAGGAATCCCCTAACATCTCACATCGGCAGGGAGCAGCTCGCCGATGTCCTGCGGTCAAGCATGCTTGAGCTGATGACCGATAATGGGATGATGAAGCTGTTCAAGACGTTGGACGTCGACGATGACGACGGAATCAGCAAGGATGACCTGATGGCATCCCTTAGGAAGCTCCCCTTCATGATCGCGCTCTTCGCGGGCCGGATCAACGGGGAAGTCTACATCGAGATAGTTTGATCGACTGGATTGATCGCAGGGGAGAGCAAAAATGGTGGATGGGAGTTTGTAACGCGGTGGGAGACGACAGACCTCCGTCTGTTTTTAGAGGGATGGTTTCCAACCGCTTCACCGTCCATGTAGCTTTCTCAGGCGTGTTGGACTAAAGTGGCTAACCGGTATAGTGCGCAATTTTGTTTCATATCGTAAAAATATAT                                                                                                                                                                                                                                             ]
[+] EMBL C98720               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GAATGCCCTTCATTTTGCAGAGAACACTAGCTATGCTATGGCACATGCACTTAATGTTATTCCAACCTCTTATTCATATGGGGATTCAATGATCATGGCTCGAGCAGTGGAAGATGGAAAGGTGAACTGCTCAAATTATATGGTGGAGATGGCTTGGGTAAAAGAAACATATGGTGTGAGCACATCAGAAGCAATGGCACTCTTGGAAGACTTTTTGTGTATGAGCCCAGACAAGGACGGACGTGTGAATGCGCAAGATTTTTGGGCTCATTTTGGCCTTAATTGCACCCCTCTTTGCAAGAAGATATTTCAGTACTTCGATTTTGAAGCCAAGGAATCCATCACATTCCGTCAGTNCTTGGATTGGATGTGCGCACCTCCAGGAAGCAGCCATCGTTCAAGGACGCCTGCGAAANCGCGTTTGAGAAGTGGAAGGAt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL AU032627             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  tttttcagACATATGGTGTGAGCACATCAGAAGCAATGGCACTCTTGGAAGACTTTTTGTGTATNAGCCCAGACAAGGACGGACGTGTGAATGCGCAAGATTTTTGGGCTCATTTTGGCCTTAATTGCACCCCTCTTTGCAAGAAGATATTTCAGTACTTCGATTTTGAAGCCAAGGAATCCATCACATTCCGTCAGTTCTT GATTGGATGTGCGCACCT CAGGAAGCAGCCATCGTTTCAGGACGCCTGCGAAACCGCGTTTGAGAGGT GTAGGAATCCCCTAACATCTCACATCGGCAGGGAGCAGCTCGCCGATGTCCTGCGGTCAAGCATGCTTGAGCTGATGACCGATAATGGGATGATGAAGCTGTTCAAGACGTTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL AU096209             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  tttttcagACATATGGTGTGAGCACATCAGAAGCAATGGCACTCTTGGAAGACTTTTTGTGTATGAGCCCAGACAAGGACGGACGTNTGAATGCGCAAGATTTTTGGGCTCATTTTGGCCTTAATTGCACCCCTCTTTGCAAGAAGATATTTCAGTACTTCGATTTTGAAGCCAAGGAATCCATCACATTCCGTCAGTTCTT GATTGGATGTGCGCACCT CAGGAAGCAGCCATCGTTTCAGGACGNCTGCGAAACCGCGTTTGAGAGGT GTAGGAATCCCCTAACATCTCACATCGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CB669774             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TTTCAGTACTTCGATTTTGAAGCCAAGGAATCCATCACATTCCGTCAGTTCTT GATTGGATGTGCGCACCT CAGGAAGCAGCCATCGTTTCAGGACGCCTGCGAAACCGCGTTTGAGAGGT GTAGGAATCCCCTAACATCTCACATCGGCAGGGAGCAGCTCGCCGATGTCCTGCGGTCAAGCATGCTTGAGCTGATGACCGATAATGGGATGATGAAGCTGTTCAAGACGTTGGACGTCGACGATGACGACGGAATCAGCAAGGATGACCTGATGGCATCCCTTAGGAAGCTCCCCTTCATGATCGCGCTCTTCGCGGGCCGGATCAACGGGGAAGTCTACATCGAGATAGTTTGATCGACTGGATTGATCGCAGGGGAGAGCAAAAATGGTGGATGGGAGTTTGTAACGCGGTGGGAGACGACAGACCTCCGTCTGTTTTTAGAGGGATGGTTTCCAACCGCTTCACCGTCCATGTAGCTTTCTCAGGCGTGTTGGACTAAAGTGGCTAACCGGTATAGTGCGCAATTTTGTTTCATATCGTAAAAATATATATTTATATCCATAGAAAAGCTGTCGCGTGATGGCACGCTGGATTGTGCAATGTGGATATGATACTGTACAACATTGGTCCAACTGGGCGTGCACATAGAAACTCTTTTTTTGGTTTGGTTTGGTTTGGCTAACTGGGGGGATGATTACAAACTCC                                                                                  ]
[+] EMBL AK058857             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AGCCATCGTGTCAGGACGCCTGCGAAACCGCGTTTGAGAGGT GTAGGAATCCCCTAACATCTCACATCGGCAGGGAGCAGCTCGCCGATGTCCTGCGGTCAAGCATGCTTGAGCTGATGACCGATAATGGGATGATGAAGCTGTTCAAGACGTTGGACGTCGACGATGACGACGGAATCAGCAAGGATGACCTGATGGCATCCCTTAGGAAGCTCCCCTTCATGATCGCGCTCTTCGCAGGCCGGATCAACGGGGAAGTCTACATCGAGATAGTTTGATCGACTGGATTGATCGCAGGGGAGAGCAAAAATGGTGGATGGGAGTTTGTAACGCGGTGGGAGACGACAGACCTCCGTCTGTTTTTAGAGGGATGGTTTCCAACCGCTTCACCGTCCATGTAGCTTTCTCAGGCGTGTTGGACTAAAGTGGCTAACCGGTATAGTGCGCAATTTTGTTTCATATCGTAAAAATATATATTTATATCCATAGAAAAGCTGTCGCGTGATGGCACGCTGGATTGTGCAATGTGGATATGATACTGTACAACATTGGTCCAACTGGGCGTGCACATAGAAACTCTTTTTTTGGTTTGGTT                                                                                                                     ]
[-] EMBL CK085231             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CATGCTTGAGCTGATGACCGATAATGGGATGATGAAGCTGTTCAAGACGTTGGACGTCGACGATGACGACGGAATCAGCAAGGATGACCTGATGGCATCCCTTAGGAAGCTCCCCTTCATGATCGCGCTCTTCGCGGGCCGGATCAACGGGGAAGTTTACATCGAGATAGTTTGATCGACTGGATTGATCGCAGGGGAGAGCAAAAATGGTGGATGGGAGTTTGTAACGCGGTGGGAGACGACAGACCTCCGTCTGTTTTTAGAGGGATGGTTTCCAACCGCTTCACCGTCCATGTAGCTTTCTCAGGCGTGTTGGACTAAAGTGGCTAACCGGTATAGTGCGCAATTTTGTTTCATATCGTAAAAATATATATTTATATCCATAGAAAAGCTGTCGCGTGATGGCACGCTGGATTGTGCAATGTGGATATGATACTGTACAACATTGGTCCAACTGGGCGTGCACATAGAAACTCTTTTTTTGGTTTGGTTTGGTTTGGCTAACTGGATGGATGATTACAAACTCCTTTTTGGCTAACTGGATGGAAGTATCTGTTTCGTATCGTCCATCCCAATATCAATCAATATAT                   ]
[+] EMBL CA764323             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ATCGAGATAGTTTGATCGACTGGATTGATCGCAGGGGAGAGCAAAAATGGTGGATGGGAGTTTGTAACGCGGTGGGAGACGACAGACCTCCGTTTGTTTTTAGAGGGATGGTTTCCAACCGCTTCACCGTCCGTGTAGCTTTCTCAGGCGTGTTGGACTAAAGTGGCTAACCGGTATAGTGCGCAATTTTGTTTCATATCGTAAAAATATATATTTATATCC                                                                                                                                                                                                                                   ]
[+] EMBL C98721               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TGGATGGGCGTTTGTAACGCGNTGGGAGACGACAGACCTCCGTCTGTTTTTAGNGGGATGGTTTCCAACCGCTTCACCGTCCATGTAGCTTTCTCAGGCGTGTTGGACTAAAGTGGCTAACCGGTATAGTGCGCAATTTTGTTTCATATCGTAAAAATATATATTTATATCCATAGAAAAGCTGTCGCGTGATGGCACGCTGGATTGTGCAATGTGGATATGATACTGTACAACATTGGTCCAACTGGGCGTGCACATAGAAACTCTTTTTTTGGTTTGGTTTGGTTTGGCTAACTGGATGGATGATTACAAACTCCTTTTTGGCTAACTGGATGGAAGTATCTGTTTCGTATCGTCCATCCCAATATCAATCAATATATGTCTTTAATTTCAAAAAAA]




>consensus_12799#0
CCCGCCTCCGCCTCCTCTCGCCTCGCCTCCGCCACCCATGGCTTCTCGAAACCCTAGCCC
CGCCTCCCTCTCCACGCCGCTCCTCTCCGACTCCATCTCGCCCACGCCCACCACCAACGG
CCACGCGGGGCACCATAACCACGACGACGACGACGAGGAGTCGCCAACGGTGTGCGGCGG
CGATGGCGGAGGAGGGGGGGACCCGTTCGCGTTCCCATCGGAGGATCGGCCGGCGTGGTG
GTCGCCGCGGGGGGTGTCCCCGGCCGACCCGTTCCGCAACGGGACGCCGGGGTGGTGCGG
GGCGTACGAGCTCGTGAGGGCGCTCGTGTGCGCGCCGGTGGCGGCGGCGAGGCTGGTGCT
GTTCGGGCTCTCCATCGCGGTGGGGTACGCCGCCACGTGGGTGGCGCTCCGCGGGTGGGT
CGACGTGCGGGAGCGGGCGGCGCAGGAGGGCGCCGGGCCCATGCCGGCGTGGCGCCGCCG
CCTCATGTGGATCACGCGGATCTCCGCGCGCTGCATCCTCTTCTCCTTCGGATACCATTG
GATAAGGAGGAAAGGAAAACCCGCGCCTAGAGAGCTTGCACCTATAGTTGTCTCAAATCA
TGTATCATACATAGAACCCATATACTTCTTCTATGAGCTGTTCCCGACAATCGTTTCTTC
AGATTCTCATGATTCCATACCATTTGTTGGAACAATTATCCGAGCAATGCAGGTTATATA
TGTTGACAGATTCTCGCCAGCTTCAAGGAAGTCTGCTGTAAATGAAATAAAGAGAAAGGC
GGCTTGCAATAGCTTCCCACGTGTCTTGTTATTCCCGGAAGGCACGACAACAAATGGAAG
ATTTCTGATTTCTTTCCAACATGGTGCATTCATACCTGGCTACCCTGTTCAACCTGTTAT
TGTGCGCTATCCACATGTGCACTTTGATCAATCATGGGGAAATATATCATTAGGAAAGCT
CATGTTCAAGATGTTTACCCAGTTTCACAATTTCATGGAGGTAGAGTACCTCCCTGTTGT
TTACCCACCTGAGATCAAGCAAGAGAATGCCCTTCATTTTGCAGAGAACACTAGCTATGC
TATGGCACATGCACTTAATGTTATTCCAACCTCTTATTCATATGGGGATTCAATGATCAT
GGCTCGAGCAGTGGAAGATGGAAAGGTGAACTGCTCAAATTATATGGTGGAGATGGCTTG
GGTAAAAGAAACATATGGTGTGAGCACATCAGAAGCAATGGCACTCTTGGAAGACTTTTT
GTGTATGAGCCCAGACAAGGACGGACGTGTGAATGCGCAAGATTTTTGGGCTCATTTTGG
CCTTAATTGCACCCCTCTTTGCAAGAAGATATTTCAGTACTTCGATTTTGAAGCCAAGGA
ATCCATCACATTCCGTCAGTTCTTGATTGGATGTGCGCACCTCAGGAAGCAGCCATCGTT
TCAGGACGCCTGCGAAACCGCGTTTGAGAGGTGTAGGAATCCCCTAACATCTCACATCGG
CAGGGAGCAGCTCGCCGATGTCCTGCGGTCAAGCATGCTTGAGCTGATGACCGATAATGG
GATGATGAAGCTGTTCAAGACGTTGGACGTCGACGATGACGACGGAATCAGCAAGGATGA
CCTGATGGCATCCCTTAGGAAGCTCCCCTTCATGATCGCGCTCTTCGCGGGCCGGATCAA
CGGGGAAGTCTACATCGAGATAGTTTGATCGACTGGATTGATCGCAGGGGAGAGCAAAAA
TGGTGGATGGGAGTTTGTAACGCGGTGGGAGACGACAGACCTCCGTCTGTTTTTAGAGGG
ATGGTTTCCAACCGCTTCACCGTCCATGTAGCTTTCTCAGGCGTGTTGGACTAAAGTGGC
TAACCGGTATAGTGCGCAATTTTGTTTCATATCGTAAAAATATATATTTATATCCATAGA
AAAGCTGTCGCGTGATGGCACGCTGGATTGTGCAATGTGGATATGATACTGTACAACATT
GGTCCAACTGGGCGTGCACATAGAAACTCTTTTTTTGGTTTGGTTTGGTTTGGCTAACTG
GATGGATGATTACAAACTCCTTTTTGGCTAACTGGATGGAAGTATCTGTTTCGTATCGTC
CATCCCAATATCAATCAATATATGTCTTTAATTTCAAAAAAA

consensusID : consensus_12799#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 582
fasta sequence

                              [CCGCCCCTTTAAAGGCTTCTCGAAACCCTAGCCCCGCCTCCCTCTCCACGCCGCTCCTCTCCGACTCCATCTCGCCCACGCCCACCACCAACGGCCACGCGGGGCACCATAACCACGACGACGACGACGAGGAGTCGCCAACGGTGTGCGGCGGCGATGGCGGAGGAGGGGGGGACCCGTTCGCGTTCCTATCGGAGGATCGGCCGGCGTGGTGGTCGCCGCGGGGGGTGTCCCCGGCCGACCCGTTCCGCAACGGGACGCCGGGGTGGGGCGGGGCGTACGAGCTCGTGAGGGCGCTCGTGTGCGCGCCGGTGGCGGCGGCGAGGCTGGTGCTGTTCGGGCTCTCCATCGCGGTGGGGTACGCCGCCACGTGGGTGGCGCTCCGCGGGTGGGTCGACGTGCGGGAGCGGGCGGCGCAGGAGGGCGCCGGGCCCATGCCGGCGTGGCGCCGCCGCCTCATGTGGATCACGCGGATCTCCGCGCGCTGCATCCTCTTCTCCTTCGGATACCATTGGATAAGGAGGAAAGGAGAACCCGCGCCTATAGAGCTTGCACCTATAGTTGTCTCAGATCATGCATCAT]

[+] EMBL CB669775             [CCGCCCCTTTAAAGGCTTCTCGAAACCCTAGCCCCGCCTCCCTCTCCACGCCGCTCCTCTCCGACTCCATCTCGCCCACGCCCACCACCAACGGCCACGCGGGGCACCATAACCACGACGACGACGACGAGGAGTCGCCAACGGTGTGCGGCGGCGATGGCGGAGGAGGGGGGGACCCGTTCGCGTTCCTATCGGAGGATCGGCCGGCGTGGTGGTCGCCGCGGGGGGTGTCCCCGGCCGACCCGTTCCGCAACGGGACGCCGGGGTGGGGCGGGGCGTACGAGCTCGTGAGGGCGCTCGTGTGCGCGCCGGTGGCGGCGGCGAGGCTGGTGCTGTTCGGGCTCTCCATCGCGGTGGGGTACGCCGCCACGTGGGTGGCGCTCCGCGGGTGGGTCGACGTGCGGGAGCGGGCGGCGCAGGAGGGCGCCGGGCCCATGCCGGCGTGGCGCCGCCGCCTCATGTGGATCACGCGGATCTCCGCGCGCTGCATCCTCTTCTCCTTCGGATACCATTGGATAAGGAGGAAAGGAGAACCCGCGCCTATAGAGCTTGCACCTATAGTTGTCTCAGATCATGCATCAT]




>consensus_12799#1
CCGCCCCTTTAAAGGCTTCTCGAAACCCTAGCCCCGCCTCCCTCTCCACGCCGCTCCTCT
CCGACTCCATCTCGCCCACGCCCACCACCAACGGCCACGCGGGGCACCATAACCACGACG
ACGACGACGAGGAGTCGCCAACGGTGTGCGGCGGCGATGGCGGAGGAGGGGGGGACCCGT
TCGCGTTCCTATCGGAGGATCGGCCGGCGTGGTGGTCGCCGCGGGGGGTGTCCCCGGCCG
ACCCGTTCCGCAACGGGACGCCGGGGTGGGGCGGGGCGTACGAGCTCGTGAGGGCGCTCG
TGTGCGCGCCGGTGGCGGCGGCGAGGCTGGTGCTGTTCGGGCTCTCCATCGCGGTGGGGT
ACGCCGCCACGTGGGTGGCGCTCCGCGGGTGGGTCGACGTGCGGGAGCGGGCGGCGCAGG
AGGGCGCCGGGCCCATGCCGGCGTGGCGCCGCCGCCTCATGTGGATCACGCGGATCTCCG
CGCGCTGCATCCTCTTCTCCTTCGGATACCATTGGATAAGGAGGAAAGGAGAACCCGCGC
CTATAGAGCTTGCACCTATAGTTGTCTCAGATCATGCATCAT

consensusID : consensus_12799#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 172
fasta sequence

                              [TCCGGAAGTTCCCGGGTCGACCCACGCGTCCGGGATATGAGTACCGTACAACANTTGGTCCAACTGGGCGTACACATAGAAACTCTCTTTTTTTTGGTTTGGTTTGGCTAACTGGATGGATGATTACAACTCTTTTTTGGCTAACTGGATGGAAGTATCTGTTTCGTAAAAA]

[+] EMBL BQ907844             [TCCGGAAGTTCCCGGGTCGACCCACGCGTCCGGGATATGAGTACCGTACAACANTTGGTCCAACTGGGCGTACACATAGAAACTCTCTTTTTTTTGGTTTGGTTTGGCTAACTGGATGGATGATTACAACTCTTTTTTGGCTAACTGGATGGAAGTATCTGTTTCGTAAAAA]




>consensus_12799#2
TCCGGAAGTTCCCGGGTCGACCCACGCGTCCGGGATATGAGTACCGTACAACANTTGGTC
CAACTGGGCGTACACATAGAAACTCTCTTTTTTTTGGTTTGGTTTGGCTAACTGGATGGA
TGATTACAACTCTTTTTTGGCTAACTGGATGGAAGTATCTGTTTCGTAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12799#0      CCCGCCTCCGCCTCCTCTCGCCTCGCCTCCGCCACCCATGGCTTCTCGAAACCCTAGCCC 60
consensus_12799#1      --------------------------CCGCCCCTTTAAAGGCTTCTCGAAACCCTAGCCC 34
consensus_12799#2      ------------------------------------------------------------
                                                                                   

consensus_12799#0      CGCCTCCCTCTCCACGCCGCTCCTCTCCGACTCCATCTCGCCCACGCCCACCACCAACGG 120
consensus_12799#1      CGCCTCCCTCTCCACGCCGCTCCTCTCCGACTCCATCTCGCCCACGCCCACCACCAACGG 94
consensus_12799#2      ------------------------------------------------------------
                                                                                   

consensus_12799#0      CCACGCGGGGCACCATAACCACGACGACGACGACGAGGAGTCGCCAACGGTGTGCGGCGG 180
consensus_12799#1      CCACGCGGGGCACCATAACCACGACGACGACGACGAGGAGTCGCCAACGGTGTGCGGCGG 154
consensus_12799#2      ------------------------------------------------------------
                                                                                   

consensus_12799#0      CGATGGCGGAGGAGGGGGGGACCCGTTCGCGTTCCCATCGGAGGATCGGCCGGCGTGGTG 240
consensus_12799#1      CGATGGCGGAGGAGGGGGGGACCCGTTCGCGTTCCTATCGGAGGATCGGCCGGCGTGGTG 214
consensus_12799#2      ------------------------------------------------------------
                                                                                   

consensus_12799#0      GTCGCCGCGGGGGGTGTCCCCGGCCGACCCGTTCCGCAACGGGACGCCGGGGTGGTGCGG 300
consensus_12799#1      GTCGCCGCGGGGGGTGTCCCCGGCCGACCCGTTCCGCAACGGGACGCCGGGGTGGGGCGG 274
consensus_12799#2      ------------------------------------------------------------
                                                                                   

consensus_12799#0      GGCGTACGAGCTCGTGAGGGCGCTCGTGTGCGCGCCGGTGGCGGCGGCGAGGCTGGTGCT 360
consensus_12799#1      GGCGTACGAGCTCGTGAGGGCGCTCGTGTGCGCGCCGGTGGCGGCGGCGAGGCTGGTGCT 334
consensus_12799#2      ------------------------------------------------------------
                                                                                   

consensus_12799#0      GTTCGGGCTCTCCATCGCGGTGGGGTACGCCGCCACGTGGGTGGCGCTCCGCGGGTGGGT 420
consensus_12799#1      GTTCGGGCTCTCCATCGCGGTGGGGTACGCCGCCACGTGGGTGGCGCTCCGCGGGTGGGT 394
consensus_12799#2      ---------------------------------------TCCGGAAGTTCCCGGGTCGAC 21
                                                                 **   * * ***** *  

consensus_12799#0      CGACGTGCGGGAGCGGGCGGCGCAGGAGGGCGCCGGGCCCATGCCGGCGTGGCGCCGCCG 480
consensus_12799#1      CGACGTGCGGGAGCGGGCGGCGCAGGAGGGCGCCGGGCCCATGCCGGCGTGGCGCCGCCG 454
consensus_12799#2      CCACGCGTCCGGGATATGAGTACCGTACAACANTTGGTCCAACTGGGCGTACACATAGAA 81
                       * *** *   * *      *  * * *   *    ** ***    *****          

consensus_12799#0      CCTCATGTGGATCACGCGGATCTCCGCGCGCTGCATCCTCTTCTCCTTCGGATACCATTG 540
consensus_12799#1      CCTCATGTGGATCACGCGGATCTCCGCGCGCTGCATCCTCTTCTCCTTCGGATACCATTG 514
consensus_12799#2      ACTCTCTTTTTTTTGGTTTGGTTTGGCTAACTGGATGGATGATTAC---AACTCTTTTTT 138
                        ***   *   *   *      *  **   *** **       * *      *    ** 

consensus_12799#0      GATAAGGAGGAAAGGAAAACCCGCGCCTAGAGAGCTTGCACCTATAGTTGTCTCAAATCA 600
consensus_12799#1      GATAAGGAGGAAAGGAGAACCCGCGCCTATAGAGCTTGCACCTATAGTTGTCTCAGATCA 574
consensus_12799#2      GGCTAACTGGATGGAAGTATCTGTTTCGTAAAAA-------------------------- 172
                       *   *   ***  * *  * * *   *   * *                           

consensus_12799#0      TGTATCATACATAGAACCCATATACTTCTTCTATGAGCTGTTCCCGACAATCGTTTCTTC 660
consensus_12799#1      TGCATCAT---------------------------------------------------- 582
consensus_12799#2      ------------------------------------------------------------
                                                                                   

consensus_12799#0      AGATTCTCATGATTCCATACCATTTGTTGGAACAATTATCCGAGCAATGCAGGTTATATA 720
consensus_12799#1      ------------------------------------------------------------
consensus_12799#2      ------------------------------------------------------------
                                                                                   

consensus_12799#0      TGTTGACAGATTCTCGCCAGCTTCAAGGAAGTCTGCTGTAAATGAAATAAAGAGAAAGGC 780
consensus_12799#1      ------------------------------------------------------------
consensus_12799#2      ------------------------------------------------------------
                                                                                   

consensus_12799#0      GGCTTGCAATAGCTTCCCACGTGTCTTGTTATTCCCGGAAGGCACGACAACAAATGGAAG 840
consensus_12799#1      ------------------------------------------------------------
consensus_12799#2      ------------------------------------------------------------
                                                                                   

consensus_12799#0      ATTTCTGATTTCTTTCCAACATGGTGCATTCATACCTGGCTACCCTGTTCAACCTGTTAT 900
consensus_12799#1      ------------------------------------------------------------
consensus_12799#2      ------------------------------------------------------------
                                                                                   

consensus_12799#0      TGTGCGCTATCCACATGTGCACTTTGATCAATCATGGGGAAATATATCATTAGGAAAGCT 960
consensus_12799#1      ------------------------------------------------------------
consensus_12799#2      ------------------------------------------------------------
                                                                                   

consensus_12799#0      CATGTTCAAGATGTTTACCCAGTTTCACAATTTCATGGAGGTAGAGTACCTCCCTGTTGT 1020
consensus_12799#1      ------------------------------------------------------------
consensus_12799#2      ------------------------------------------------------------
                                                                                   

consensus_12799#0      TTACCCACCTGAGATCAAGCAAGAGAATGCCCTTCATTTTGCAGAGAACACTAGCTATGC 1080
consensus_12799#1      ------------------------------------------------------------
consensus_12799#2      ------------------------------------------------------------
                                                                                   

consensus_12799#0      TATGGCACATGCACTTAATGTTATTCCAACCTCTTATTCATATGGGGATTCAATGATCAT 1140
consensus_12799#1      ------------------------------------------------------------
consensus_12799#2      ------------------------------------------------------------
                                                                                   

consensus_12799#0      GGCTCGAGCAGTGGAAGATGGAAAGGTGAACTGCTCAAATTATATGGTGGAGATGGCTTG 1200
consensus_12799#1      ------------------------------------------------------------
consensus_12799#2      ------------------------------------------------------------
                                                                                   

consensus_12799#0      GGTAAAAGAAACATATGGTGTGAGCACATCAGAAGCAATGGCACTCTTGGAAGACTTTTT 1260
consensus_12799#1      ------------------------------------------------------------
consensus_12799#2      ------------------------------------------------------------
                                                                                   

consensus_12799#0      GTGTATGAGCCCAGACAAGGACGGACGTGTGAATGCGCAAGATTTTTGGGCTCATTTTGG 1320
consensus_12799#1      ------------------------------------------------------------
consensus_12799#2      ------------------------------------------------------------
                                                                                   

consensus_12799#0      CCTTAATTGCACCCCTCTTTGCAAGAAGATATTTCAGTACTTCGATTTTGAAGCCAAGGA 1380
consensus_12799#1      ------------------------------------------------------------
consensus_12799#2      ------------------------------------------------------------
                                                                                   

consensus_12799#0      ATCCATCACATTCCGTCAGTTCTTGATTGGATGTGCGCACCTCAGGAAGCAGCCATCGTT 1440
consensus_12799#1      ------------------------------------------------------------
consensus_12799#2      ------------------------------------------------------------
                                                                                   

consensus_12799#0      TCAGGACGCCTGCGAAACCGCGTTTGAGAGGTGTAGGAATCCCCTAACATCTCACATCGG 1500
consensus_12799#1      ------------------------------------------------------------
consensus_12799#2      ------------------------------------------------------------
                                                                                   

consensus_12799#0      CAGGGAGCAGCTCGCCGATGTCCTGCGGTCAAGCATGCTTGAGCTGATGACCGATAATGG 1560
consensus_12799#1      ------------------------------------------------------------
consensus_12799#2      ------------------------------------------------------------
                                                                                   

consensus_12799#0      GATGATGAAGCTGTTCAAGACGTTGGACGTCGACGATGACGACGGAATCAGCAAGGATGA 1620
consensus_12799#1      ------------------------------------------------------------
consensus_12799#2      ------------------------------------------------------------
                                                                                   

consensus_12799#0      CCTGATGGCATCCCTTAGGAAGCTCCCCTTCATGATCGCGCTCTTCGCGGGCCGGATCAA 1680
consensus_12799#1      ------------------------------------------------------------
consensus_12799#2      ------------------------------------------------------------
                                                                                   

consensus_12799#0      CGGGGAAGTCTACATCGAGATAGTTTGATCGACTGGATTGATCGCAGGGGAGAGCAAAAA 1740
consensus_12799#1      ------------------------------------------------------------
consensus_12799#2      ------------------------------------------------------------
                                                                                   

consensus_12799#0      TGGTGGATGGGAGTTTGTAACGCGGTGGGAGACGACAGACCTCCGTCTGTTTTTAGAGGG 1800
consensus_12799#1      ------------------------------------------------------------
consensus_12799#2      ------------------------------------------------------------
                                                                                   

consensus_12799#0      ATGGTTTCCAACCGCTTCACCGTCCATGTAGCTTTCTCAGGCGTGTTGGACTAAAGTGGC 1860
consensus_12799#1      ------------------------------------------------------------
consensus_12799#2      ------------------------------------------------------------
                                                                                   

consensus_12799#0      TAACCGGTATAGTGCGCAATTTTGTTTCATATCGTAAAAATATATATTTATATCCATAGA 1920
consensus_12799#1      ------------------------------------------------------------
consensus_12799#2      ------------------------------------------------------------
                                                                                   

consensus_12799#0      AAAGCTGTCGCGTGATGGCACGCTGGATTGTGCAATGTGGATATGATACTGTACAACATT 1980
consensus_12799#1      ------------------------------------------------------------
consensus_12799#2      ------------------------------------------------------------
                                                                                   

consensus_12799#0      GGTCCAACTGGGCGTGCACATAGAAACTCTTTTTTTGGTTTGGTTTGGTTTGGCTAACTG 2040
consensus_12799#1      ------------------------------------------------------------
consensus_12799#2      ------------------------------------------------------------
                                                                                   

consensus_12799#0      GATGGATGATTACAAACTCCTTTTTGGCTAACTGGATGGAAGTATCTGTTTCGTATCGTC 2100
consensus_12799#1      ------------------------------------------------------------
consensus_12799#2      ------------------------------------------------------------
                                                                                   

consensus_12799#0      CATCCCAATATCAATCAATATATGTCTTTAATTTCAAAAAAA 2142
consensus_12799#1      ------------------------------------------
consensus_12799#2      ------------------------------------------