cluster # 1287

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Oryza sativa
cluster # 1287 cluster # 1287 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1287#0 length = 547 sequences # 1

consensus_1287#1 length = 362 sequences # 1

consensusID : consensus_1287#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 547
fasta sequence

                              [TGNGGGCATCAGAAGTTCGAGACCCTTTCTGTACCTGCCCCCACTCACCGTGGAGGATCTCTTGTAGCAGATCGAGTACCTGCTTCGGTCCAAGTGGGTGCCTTGCCTCGAGTTCAGCAAGGTTGGGTTCGTCTACCGCGAGAACCACAGGTCTCCCGGGTACTACGATGGCAGGTATTGGACCATGTGGAAGCTGCCCATGTTCGGCTGCACCGACGCCACCCAGGTGCTCAAGGAGTCTCGAGGAGGCCACAGAAGGCCTACCCCGATGCCTTTGTCCGTATCATCGGCTTNGACAACGTCAGGCAGGTGCAGTTGATTAGCTTCATCGCCTACAAGCCCCCAGGTTGCGAGGAGTCTGGTGGCAACTAAGCTAAGATCAANCCTCGCGCTGGTGGATTGCTGCCTATAATAATAGTATGCAGCTTTGTTTTGGGCTATGTTGATGATATATCAATATATAATATGCTATATATTTTTATTTTACAGTTTGGTTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANCCACCAAAAAAAAAA]

[+] EMBL BM038182             [TGNGGGCATCAGAAGTTCGAGACCCTTTCTGTACCTGCCCCCACTCACCGTGGAGGATCTCTTGTAGCAGATCGAGTACCTGCTTCGGTCCAAGTGGGTGCCTTGCCTCGAGTTCAGCAAGGTTGGGTTCGTCTACCGCGAGAACCACAGGTCTCCCGGGTACTACGATGGCAGGTATTGGACCATGTGGAAGCTGCCCATGTTCGGCTGCACCGACGCCACCCAGGTGCTCAAGGAGTCTCGAGGAGGCCACAGAAGGCCTACCCCGATGCCTTTGTCCGTATCATCGGCTTNGACAACGTCAGGCAGGTGCAGTTGATTAGCTTCATCGCCTACAAGCCCCCAGGTTGCGAGGAGTCTGGTGGCAACTAAGCTAAGATCAANCCTCGCGCTGGTGGATTGCTGCCTATAATAATAGTATGCAGCTTTGTTTTGGGCTATGTTGATGATATATCAATATATAATATGCTATATATTTTTATTTTACAGTTTGGTTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANCCACCAAAAAAAAAA]




>consensus_1287#0
TGNGGGCATCAGAAGTTCGAGACCCTTTCTGTACCTGCCCCCACTCACCGTGGAGGATCT
CTTGTAGCAGATCGAGTACCTGCTTCGGTCCAAGTGGGTGCCTTGCCTCGAGTTCAGCAA
GGTTGGGTTCGTCTACCGCGAGAACCACAGGTCTCCCGGGTACTACGATGGCAGGTATTG
GACCATGTGGAAGCTGCCCATGTTCGGCTGCACCGACGCCACCCAGGTGCTCAAGGAGTC
TCGAGGAGGCCACAGAAGGCCTACCCCGATGCCTTTGTCCGTATCATCGGCTTNGACAAC
GTCAGGCAGGTGCAGTTGATTAGCTTCATCGCCTACAAGCCCCCAGGTTGCGAGGAGTCT
GGTGGCAACTAAGCTAAGATCAANCCTCGCGCTGGTGGATTGCTGCCTATAATAATAGTA
TGCAGCTTTGTTTTGGGCTATGTTGATGATATATCAATATATAATATGCTATATATTTTT
ATTTTACAGTTTGGTTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANCCACCAAA
AAAAAAA

consensusID : consensus_1287#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 362
fasta sequence

                              [ACGATGGCAGGTATTGGACCATGTGGAAGCTGCCCATGTTCGGCTGCACCGATGCCACNCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCCTACCCCGATGCCTTTGTCCGTATCATCGGCTTCGACAACGTCAGGCAGGTGCAGTTGATTAGCTTCATCGCCTACAAGCCCCCAGGTTGCGAGGAGTCTGGAGAAACTAAGCTAAGATCAAGCATCGCGCTGGTGGATTGCTGCCTATAATAATAGTATGCAGCTTTGTTTTGGGCTATGTTGATGATATATCAATATATAATATGCTATATATTTTTATTTTACAGGGTGGTTTAAAAAAAAAAAAAAAAAACATTGTCATGCCGT]

[-] EMBL CF300071             [ACGATGGCAGGTATTGGACCATGTGGAAGCTGCCCATGTTCGGCTGCACCGATGCCACNCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCCTACCCCGATGCCTTTGTCCGTATCATCGGCTTCGACAACGTCAGGCAGGTGCAGTTGATTAGCTTCATCGCCTACAAGCCCCCAGGTTGCGAGGAGTCTGGAGAAACTAAGCTAAGATCAAGCATCGCGCTGGTGGATTGCTGCCTATAATAATAGTATGCAGCTTTGTTTTGGGCTATGTTGATGATATATCAATATATAATATGCTATATATTTTTATTTTACAGGGTGGTTTAAAAAAAAAAAAAAAAAACATTGTCATGCCGT]




>consensus_1287#1
ACGATGGCAGGTATTGGACCATGTGGAAGCTGCCCATGTTCGGCTGCACCGATGCCACNC
AGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCCTACCCCGATGCCTTTGTCCGTATCA
TCGGCTTCGACAACGTCAGGCAGGTGCAGTTGATTAGCTTCATCGCCTACAAGCCCCCAG
GTTGCGAGGAGTCTGGAGAAACTAAGCTAAGATCAAGCATCGCGCTGGTGGATTGCTGCC
TATAATAATAGTATGCAGCTTTGTTTTGGGCTATGTTGATGATATATCAATATATAATAT
GCTATATATTTTTATTTTACAGGGTGGTTTAAAAAAAAAAAAAAAAAACATTGTCATGCC
GT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1287#0      TGNGGGCATCAGAAGTTCGAGACCCTTTCTGTACCTGCCCCCACTCACCGTGGAGGATCT 60
consensus_1287#1      ------------------------------------------------------------
                                                                                  

consensus_1287#0      CTTGTAGCAGATCGAGTACCTGCTTCGGTCCAAGTGGGTGCCTTGCCTCGAGTTCAGCAA 120
consensus_1287#1      ------------------------------------------------------------
                                                                                  

consensus_1287#0      GGTTGGGTTCGTCTACCGCGAGAACCACAGGTCTCCCGGGTACTACGATGGCAGGTATTG 180
consensus_1287#1      --------------------------------------------ACGATGGCAGGTATTG 16
                                                                  ****************

consensus_1287#0      GACCATGTGGAAGCTGCCCATGTTCGGCTGCACCGACGCCACCCAGGTGCTCAAGGAGTC 240
consensus_1287#1      GACCATGTGGAAGCTGCCCATGTTCGGCTGCACCGATGCCACNCAGGTGCTCAAGGAG-C 75
                      ************************************ ***** *************** *

consensus_1287#0      TCGAGGAGGCCACAGAAGGCCTACCCCGATGCCTTTGTCCGTATCATCGGCTTNGACAAC 300
consensus_1287#1      TCGAGGAGGCCA-AGAAGGCCTACCCCGATGCCTTTGTCCGTATCATCGGCTTCGACAAC 134
                      ************ **************************************** ******

consensus_1287#0      GTCAGGCAGGTGCAGTTGATTAGCTTCATCGCCTACAAGCCCCCAGGTTGCGAGGAGTCT 360
consensus_1287#1      GTCAGGCAGGTGCAGTTGATTAGCTTCATCGCCTACAAGCCCCCAGGTTGCGAGGAGTCT 194
                      ************************************************************

consensus_1287#0      GGTGGCAACTAAGCTAAGATCAANCCTCGCGCTGGTGGATTGCTGCCTATAATAATAGTA 420
consensus_1287#1      GG-AGAAACTAAGCTAAGATCAAGCATCGCGCTGGTGGATTGCTGCCTATAATAATAGTA 253
                      **  * ***************** * **********************************

consensus_1287#0      TGCAGCTTTGTTTTGGGCTATGTTGATGATATATCAATATATAATATGCTATATATTTTT 480
consensus_1287#1      TGCAGCTTTGTTTTGGGCTATGTTGATGATATATCAATATATAATATGCTATATATTTTT 313
                      ************************************************************

consensus_1287#0      ATTTTACAGTTTGGTTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANCCACCAAA 540
consensus_1287#1      ATTTTACAGGGTGGTT-TAAAAAAAAAAAAAAAAAACATTGTCATGCCGT---------- 362
                      *********  ***** ******************* *     *                

consensus_1287#0      AAAAAAA 547
consensus_1287#1      -------