Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 12879 cluster # 12879       Sequences # 11       consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12879#0 length = 1370 sequences # 6  
consensus_12879#1 length = 612 sequences # 1  
 consensus_12879#2 length = 611 sequences # 1  
consensus_12879#3 length = 502 sequences # 3  
consensusID : consensus_12879#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1370
fasta sequence 
                              [TCCTTTTTTTAGATCCAACAAGCTCATATGCAATATATACATACTCACATCGGGAGAGGACCAATACTGTACAGATGTTTTTATTATACACATGAAGACATCCTAATAGCTATTATGCCATCCATTTTCCCTAAGAAATCTTATTAGGTCCACATAAACATCATCTTTCGCCTTCACGCTCATAACAAAATCAATATGGCCATAGTCACCAATGTACAGAAGTTCTGGTGTAGATCCCAGCTCTCTGATAGTACGCTGAACATCGGTTACATCAGCCAATGCATCAAGACCTCCATATCCCATCCATATGGGCAGTGATTCTGGTATGCTGCTTAGGTCAAATGCGGGAGGACGCAAATGACCGTAGCGCCTTAAGTTTCCCAATAACCCATAGTCATACTTTGCGAAAGTGCCTTTCCTGATCATCTGAAAAAGATGGTGCAGATTTTTTGTCGATGATGGATGAGGTTCATACTCCAAATAATAATCAATCCTTGATGTATTGAAGCAACAGTTTTCCCCTGTAATCGCAGATAGCAAATTGTTGCAATCCACGTGTTCACCATCGCACAAAGAATCTACTATTTGAACCCCCATGTCGCTACGGAAGTTCAGCTGGTGAATTCCCATAGTAACAAGCATCTGATCAAGATGCATGGCGACTGCTCTGAGAACAAAACTAGCACTAACATGATCAAGATAAGAAATAGGACAAAGAAGTGCTGCAGAGCTAATCATTTTTACTATTTCGGGCATCGTCAAAGCCGCCAAACCCATTATAGTTCCCTGTGAATGCCCCACATATAGAATTTTGGACTGTGTGACTGTATACACATAGCCTAGCATTGCTAAAAGGTCATATTCAGCTAACTCTTGCCAGCTCCAATCCCAGAAAAGCTTATCATGAACAGAAAAGGTTGAATGACCTTTACTCCAACGCGTTCCACGGACATTCCCAATCCAAACATCAAAACCGTTATCAGCAAGGA-TATA-CCCAAGTGATTGCTCAGCAGAGTTTATGAACCATGTGTCTCCTCCCTGAAAAAGACCATGTTGAAGAAAAACTGGAGGGCCAGTACTATCTGCTGCTTTATTTTTGCC-ATGTGGGATATGCTGAAGAGATAAAAGGAATCCATCTTTTGTTTCAACGTTGTGCTCGGTGCAGGGGTAGCCGAGTGGCAGGAGCAGCTGG-TCGCAGAGGCCGCCGGAGCCGGAGCCGACGCGGCGGAGGGCGGCGGCGGCTGGGGAGGCTCCGGAGACGATGCGACCGCAGCAAGAGACGACGAGGAGGATCAGGGGGAGCGCTCCTCC-GGGGCGTGGCCCGCCATCGCCATCGCCAACGCCCGCCGCGCTTTGGCGGTGGTGTTGCT]

[+] EMBL CB648800             [TCCTTTTTTTAGATCCAACAAGCTCATATGCAATATATACATACTCACATCGGGAGAGGACCAATACTGTACAGATGTTTTTATTATACACATGAAGACATCCTAATAGCTATTATGCCATCCATTTTCCCTAAGAAATCTTATTAGGTCCACATAAACATCATCTTTCGCCTTCACGCTCATAACAAAATCAATATGGCCATAGTCACCAATGTACAGAAGTTCTGGTGTAGATCCCAGCTCTCTGATAGTACGCTGAACATCGGTTACATCAGCCAATGCATCAAGACCTCCATATCCCATCCATATGGGCAGTGATTCTGGTATGCTGCTTAGGTCAAATGCGGGAGGACGCAAATGACCGTAGCGCCTTAAGTTTCCCAATAACCCATAGTCATACTTTGCGAAAGTGCCTTTCCTGATCATCTGAAAAAGATGGTGCAGATTTTTTGTCGATGATGGATGAGGTTCATACTCCAAATAATAATCAATCCTTGATGTATTGAAGCAACAGTTTTCCCCTGTAATCGCAGATAGCAAATTGTTGCAATCCACGTGTTCACCATCGCACAAAGAATCTACTATTTGAACCCCCATGTCGCTACGGAAGTTCAGCTGGTGAATTCCCATAGTAACAAGCATCTGATCAAGATGCATGGCGACTGCTCTGAGAACAAAACTAGCACTAACATGATCAAGATAAGAAATAGGACAAAGAAGTGCTGCAGAGCTAATCATTTTTACTATTTCGGGCATCGTCAAAGCCGCCAAACCCATTATAGTTCCCTGTGAATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CB622010             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CTACGGAAGTTCAGCTGGTGAATTCCCATAGTAACAAGCATCTGATCAAGATGCATGGCGACTGCTCTGAGAACAAAACTAGCACTAACATGATCAAGATAAGAAATAGGACAAAGAAGTGCTGCCGAGCTAATCATTTTTACTATTTCGGGCATCGTCAAAGCCGCCAAACCCATTATAGTTCCCTGTGAATGCCCCACATATAGAATTTTGGACTGTGTGACTGTATACACATAGCCTAGCATTGCTAAAAGGTCATATTCAGCTAACTCTTGCCAGCTCCAATCCCAGAAAAGCTTATCATGAACAGAAAAGGTTGAATGACCTTTACTCCAACGCGTTCCACGGACATTCCCAATCCAAACATCAAAACCGTTATCAGCAAGGA TATA CCCAAGTGATTGCTCAGCAGAGTTTATGAACCATGTGTCTCCTCCCTGAAAAAGACCATGTTGAAGAAAAACTGGAGGGCCAGTACTATCTGCTGCTTTATTTTTGCC ATGTGGGATATGCTGAAGAGATAAAAGGAATCCATCTTTTGTTTCAACGTTGTGCTCGGTGCAGGGGTAGCCGAGTGGCAGGAGCAGCTGG TCGCAGAGGCCGCCGGAGCCGGAGCCGACGCGGCGGAGGGCGGCGGCGGCTGGGGAGGCTCCGGAGACGACGAGACCGCAGCAAGAGACGACGAGGAGGATCAGGGGGAGCGCTCCTCCGGGGGCGTGGCCCGCCATCGCCATCGCCGCCGCCCGCCGCaaagtggt            ]
[-] EMBL CB648799             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             AGCATCTGATCAAGATGCATGGCGACTGCTCTGAGAACAAAACTAGCACTAACATGATCAAGATAAGAAATAGGACAAAGAAGTGCTGCAGAGCTAATCATTTTTACTATTTCGGGCATCGTCAAAGCCGCCAAACCCATTATAGTTCCCTGTGAATGCCCCACATATAGAATTTTGGACTGTGTGACTGTATACACATAGCCTAGCATTGCTAAAAGGTCATATTCAGCTAACTCTTGCCAGCTCCAATCCCAGAAAAGCTTATCATGAACAGAAAAGGTTGAATGACCTTTACTCCAACGCGTTCCACGGACATTCCCAATCCAAACATCAAAACCGTTATCAGCAAGGA TATA CCCAAGTGATTGCTCAGCAGAGTTTATGAACCATGTGTCTCCTCCCTGAAAAAGACCATGTTGAAGAAAAACTGGAGGGCCAGTACTATCTGCTGCTTTATTTTTGCC ATGTGGGATATGCTGAAGAGATAAAAGGAATCCATCTTTTGTTTCAACGTTGTGCTCGGTGCAGGGGTAGCCGAGTGGCAGGAGCAGCTGG TCGCAGAGGCCGCCGGAGCCGGAGCCGACGCGGCGGAGGGCGGCGGCGGCTGGGGAGGCTCCGGAGACGATGCGACCGCAGCAAGAGACGACGAGGAGGATCAGGGGGAGCGCTCCTCCGGGGGCGTGGCCCGCCATCGCCATCGCCAACGCCCGCCGCGCTTTGGCGAAGGTGTTGC ]
[-] EMBL AU088737             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GAAAAGGTTG ATGACC TTA TCCAACGCGTTCTACGGACATT CCAATCCAAACATCAAAACCGTTATCAGCAAGGATTATACCCCAAGTGA TGCNCAGCAGAGTTTATGAACCATGTGTCTCCTCCCTGAAAAAGACCATGTTGAAGAAAAACTGGAGGGCCAGTACTATCTGCTGCTTTATTTTTGCCGATGTGGGATATGCTGAAGAGATAAAAGGAATCCATCTTTTGTTTCAACGTTGTGCTCGGTGCAGGGGTAGCCGAGTGGCAGGAGCAGCTGGTTCGCAGAGGCCGCCGGAGCCGGAGCCGACGCGGCGGAGGGCGGCGGCGGCTGGGGAGGCTCCGGAGACGATGCGACNGCAGCAAGAGACGACGAGGAGGATCAGGGGGAGCGCTCCTCC GGGGCGTGGCCCGCCATCGCCATCGCCAACGCCCGCCGCGCTTTGGCGGTGGTGTTGCT]
[-] EMBL AU161807             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CCATGTGTCTCCTCCCTGAAAAAGACCATGTTNAANAAAAACTGGAGGCCCAGTACTATCTGCTGCTTTATTTTTGCC ATGTGGGATATGCTGAAGAGATAAAAGGAATCCATCTTTTGTTTCAACGTTGTGCTCGGTGCAGGGGTAGCCGAGTGGCAGGAGCAGCTGG TTGCAGAGGCCGCCGGAGCCGGAGCCGACGCGGCGGAGGGCGGCGGCGGCTGGGGAGGCTCCGGAGACGATGCGACCGCAGCAAGAGACGACGAGGAGGATCAGGGGGAGCNCTCCTCC GGGGCGTGGCCCGCCATCGCCATCGCCAACGCCCGCCGCGCTTTGGCGGTGGTGTTGC ]
[-] EMBL AU161802             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TGGAGGGCCAGTACTATCTGCTGCTTTATTTTTGCC ATGTGGGATATGCTGAAGAGATAAAAGGAATCCATCTTTTGTTTCAACGTTGTGCTCGGTGCAGGGGTAGCCGAGTGGCAGGAGCAGCTGG TCGCAGAGGCCGCCGGAGCCGGAGCCGACGCGGCGGAGGGCGGCGGCGGCTGGGGAGGCTCCGGAGACGATGCGACCGCAGCAAGAGACGACGAGGAGGATCAGGGGGAGCGCTCCTCC GGGGCGTGGCCCGCCATCGCCATCGCCAACGCCCGCCGCGCTTTGGCGGTGGTGTTGC ]




>consensus_12879#0
TCCTTTTTTTAGATCCAACAAGCTCATATGCAATATATACATACTCACATCGGGAGAGGA
CCAATACTGTACAGATGTTTTTATTATACACATGAAGACATCCTAATAGCTATTATGCCA
TCCATTTTCCCTAAGAAATCTTATTAGGTCCACATAAACATCATCTTTCGCCTTCACGCT
CATAACAAAATCAATATGGCCATAGTCACCAATGTACAGAAGTTCTGGTGTAGATCCCAG
CTCTCTGATAGTACGCTGAACATCGGTTACATCAGCCAATGCATCAAGACCTCCATATCC
CATCCATATGGGCAGTGATTCTGGTATGCTGCTTAGGTCAAATGCGGGAGGACGCAAATG
ACCGTAGCGCCTTAAGTTTCCCAATAACCCATAGTCATACTTTGCGAAAGTGCCTTTCCT
GATCATCTGAAAAAGATGGTGCAGATTTTTTGTCGATGATGGATGAGGTTCATACTCCAA
ATAATAATCAATCCTTGATGTATTGAAGCAACAGTTTTCCCCTGTAATCGCAGATAGCAA
ATTGTTGCAATCCACGTGTTCACCATCGCACAAAGAATCTACTATTTGAACCCCCATGTC
GCTACGGAAGTTCAGCTGGTGAATTCCCATAGTAACAAGCATCTGATCAAGATGCATGGC
GACTGCTCTGAGAACAAAACTAGCACTAACATGATCAAGATAAGAAATAGGACAAAGAAG
TGCTGCAGAGCTAATCATTTTTACTATTTCGGGCATCGTCAAAGCCGCCAAACCCATTAT
AGTTCCCTGTGAATGCCCCACATATAGAATTTTGGACTGTGTGACTGTATACACATAGCC
TAGCATTGCTAAAAGGTCATATTCAGCTAACTCTTGCCAGCTCCAATCCCAGAAAAGCTT
ATCATGAACAGAAAAGGTTGAATGACCTTTACTCCAACGCGTTCCACGGACATTCCCAAT
CCAAACATCAAAACCGTTATCAGCAAGGATATACCCAAGTGATTGCTCAGCAGAGTTTAT
GAACCATGTGTCTCCTCCCTGAAAAAGACCATGTTGAAGAAAAACTGGAGGGCCAGTACT
ATCTGCTGCTTTATTTTTGCCATGTGGGATATGCTGAAGAGATAAAAGGAATCCATCTTT
TGTTTCAACGTTGTGCTCGGTGCAGGGGTAGCCGAGTGGCAGGAGCAGCTGGTCGCAGAG
GCCGCCGGAGCCGGAGCCGACGCGGCGGAGGGCGGCGGCGGCTGGGGAGGCTCCGGAGAC
GATGCGACCGCAGCAAGAGACGACGAGGAGGATCAGGGGGAGCGCTCCTCCGGGGCGTGG
CCCGCCATCGCCATCGCCAACGCCCGCCGCGCTTTGGCGGTGGTGTTGCT

consensusID : consensus_12879#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 612
fasta sequence 
                              [TTTTTTTAGATCCNACAAGCTCATATGCAATATATACATACTCACATCGGGAGAGGACCAATACTGTACAGATGTTTTTATTATACACNTGAAGACATCCTAATAGCTATTATGCCATCCATTTTCCCTAAGAAATCTTATTAGGTCCACATAAACATCATCTNTCGCCTTCACGCTCATAACAAAATCAATATGGCCATAGTCACCAATGTACAGAAGTTCTGGTTGTAGATCCCAGCTCTCTGATAGTACGCTGAACATCGGTTACATCAGCCAATGCATCAAGACCTCCATATCCCATCCATATGGGCCGTGATTCTGGTATGCTGCTTAAGGGTCAAATTGCGGGAGGAACGCANATGACCGTAGCGCCTTAGGTTTCCCCAATAACCCCAATAGTCATNACTTTGGCGAAAGTGCCTTTCTGAATCCTCCTGAAAACGATGGTGCAAATTTTTCGGTCGACTACTGATGAGTCCNACTCCCATAATAACCCTTGATGTATTGAAGCCCAGTTTCCCCCGTATCGCGCGATAANAACATTTGGTGGGGGACACCCCAGNTGAGCCACTCGGGCGAAGAAGNTTCATAATTAGGAGCCCCCATNTGGCT]

[-] EMBL BM037885             [TTTTTTTAGATCCNACAAGCTCATATGCAATATATACATACTCACATCGGGAGAGGACCAATACTGTACAGATGTTTTTATTATACACNTGAAGACATCCTAATAGCTATTATGCCATCCATTTTCCCTAAGAAATCTTATTAGGTCCACATAAACATCATCTNTCGCCTTCACGCTCATAACAAAATCAATATGGCCATAGTCACCAATGTACAGAAGTTCTGGTTGTAGATCCCAGCTCTCTGATAGTACGCTGAACATCGGTTACATCAGCCAATGCATCAAGACCTCCATATCCCATCCATATGGGCCGTGATTCTGGTATGCTGCTTAAGGGTCAAATTGCGGGAGGAACGCANATGACCGTAGCGCCTTAGGTTTCCCCAATAACCCCAATAGTCATNACTTTGGCGAAAGTGCCTTTCTGAATCCTCCTGAAAACGATGGTGCAAATTTTTCGGTCGACTACTGATGAGTCCNACTCCCATAATAACCCTTGATGTATTGAAGCCCAGTTTCCCCCGTATCGCGCGATAANAACATTTGGTGGGGGACACCCCAGNTGAGCCACTCGGGCGAAGAAGNTTCATAATTAGGAGCCCCCATNTGGCT]




>consensus_12879#1
TTTTTTTAGATCCNACAAGCTCATATGCAATATATACATACTCACATCGGGAGAGGACCA
ATACTGTACAGATGTTTTTATTATACACNTGAAGACATCCTAATAGCTATTATGCCATCC
ATTTTCCCTAAGAAATCTTATTAGGTCCACATAAACATCATCTNTCGCCTTCACGCTCAT
AACAAAATCAATATGGCCATAGTCACCAATGTACAGAAGTTCTGGTTGTAGATCCCAGCT
CTCTGATAGTACGCTGAACATCGGTTACATCAGCCAATGCATCAAGACCTCCATATCCCA
TCCATATGGGCCGTGATTCTGGTATGCTGCTTAAGGGTCAAATTGCGGGAGGAACGCANA
TGACCGTAGCGCCTTAGGTTTCCCCAATAACCCCAATAGTCATNACTTTGGCGAAAGTGC
CTTTCTGAATCCTCCTGAAAACGATGGTGCAAATTTTTCGGTCGACTACTGATGAGTCCN
ACTCCCATAATAACCCTTGATGTATTGAAGCCCAGTTTCCCCCGTATCGCGCGATAANAA
CATTTGGTGGGGGACACCCCAGNTGAGCCACTCGGGCGAAGAAGNTTCATAATTAGGAGC
CCCCATNTGGCT

consensusID : consensus_12879#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 611
fasta sequence 
                              [TTTTTTTTTTAAAGAGGGTTTTCGTATAATGGATATACAGTAGTGGAGCGATAAGTTGGATACAATGATACAATAGCTGCTGACAGCGTTTTAGACTTGAGAGCATGCACCATCAGCATCCCAACCAAGCTCCATCATGCACATCATATTACATCACTCCACATCGGGCAGCAGGCACCCAATACTGTCACCAGCATGTTTTTCATTATCACCACATGCAAGACCATCCTTAATCAGCTCATTCATGCCATCCCATTTTCCCCTTAAGCAAATCTTCATTAGGTCCCACGATAAACATCCATCTTTCGCCTCTCCACGCTCATTAACCAAAATCAATATGGCCCATAGTCACCCAATGTACCAGCACAGTTCTAGGTGTAGCATCCCCAGCTCTCTGGATAGTCACGCTGAACATCGGTTACCATCCAGCCAATGCATCAAGACCTCCCATATTCCCATCCATATGGGCAGGGATATCTGGTATGCTGCTTAGGTCACAATGCGGGAGAGACGCAAATGACCGTAGCGCCTTAGGGTTTTCCCAATAAACCAATTAATCATAATTTGGGAAAAGTGGCCTTTTTCCCTGGATCATCTGACACAACAGATGG]

[-] EMBL BQ907956             [TTTTTTTTTTAAAGAGGGTTTTCGTATAATGGATATACAGTAGTGGAGCGATAAGTTGGATACAATGATACAATAGCTGCTGACAGCGTTTTAGACTTGAGAGCATGCACCATCAGCATCCCAACCAAGCTCCATCATGCACATCATATTACATCACTCCACATCGGGCAGCAGGCACCCAATACTGTCACCAGCATGTTTTTCATTATCACCACATGCAAGACCATCCTTAATCAGCTCATTCATGCCATCCCATTTTCCCCTTAAGCAAATCTTCATTAGGTCCCACGATAAACATCCATCTTTCGCCTCTCCACGCTCATTAACCAAAATCAATATGGCCCATAGTCACCCAATGTACCAGCACAGTTCTAGGTGTAGCATCCCCAGCTCTCTGGATAGTCACGCTGAACATCGGTTACCATCCAGCCAATGCATCAAGACCTCCCATATTCCCATCCATATGGGCAGGGATATCTGGTATGCTGCTTAGGTCACAATGCGGGAGAGACGCAAATGACCGTAGCGCCTTAGGGTTTTCCCAATAAACCAATTAATCATAATTTGGGAAAAGTGGCCTTTTTCCCTGGATCATCTGACACAACAGATGG]




>consensus_12879#2
TTTTTTTTTTAAAGAGGGTTTTCGTATAATGGATATACAGTAGTGGAGCGATAAGTTGGA
TACAATGATACAATAGCTGCTGACAGCGTTTTAGACTTGAGAGCATGCACCATCAGCATC
CCAACCAAGCTCCATCATGCACATCATATTACATCACTCCACATCGGGCAGCAGGCACCC
AATACTGTCACCAGCATGTTTTTCATTATCACCACATGCAAGACCATCCTTAATCAGCTC
ATTCATGCCATCCCATTTTCCCCTTAAGCAAATCTTCATTAGGTCCCACGATAAACATCC
ATCTTTCGCCTCTCCACGCTCATTAACCAAAATCAATATGGCCCATAGTCACCCAATGTA
CCAGCACAGTTCTAGGTGTAGCATCCCCAGCTCTCTGGATAGTCACGCTGAACATCGGTT
ACCATCCAGCCAATGCATCAAGACCTCCCATATTCCCATCCATATGGGCAGGGATATCTG
GTATGCTGCTTAGGTCACAATGCGGGAGAGACGCAAATGACCGTAGCGCCTTAGGGTTTT
CCCAATAAACCAATTAATCATAATTTGGGAAAAGTGGCCTTTTTCCCTGGATCATCTGAC
ACAACAGATGG

consensusID : consensus_12879#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 502
fasta sequence 
                              [TTTTTTGAAGAGGAAATGAAGAGGGTTTTCTATAATGGATATACAGTAGTGGAG-CGATAAGTTGGATACAATGATACAATTGCTGCTGACAGCGTTTTAGACTTGAGAGCATGCACCATAGATCCAACAAGCTCATATGCAATATATACATAGCCTAGCATTGCTAAAAGGTCATATTCAGCTAACTCTTGCCAGCTCCAATCCCAGAAAAGCTTATCATGAACAGAAAAGGTTGAATGACCTTTACTCCAACGCGTTCCACGGACATTCCCAATCCAAACATCAAAACCGTTATCAGCAAGGATATACCCAAGTGATTGCTCAGCAGAGTTTATGAACCATGTGTCTCCTCCCTGAAAAAGA-CATGTTGAAGAAAAACTGGAGGG-CAGTACTATCTGCTGGTTTATTTTTGCCATGTGGGAATATGCTGAAGAGTTAGAGGAATCCATCTTTTGTTTCAACGTTGTGACTCCGTGCAGGTTACCGAGTTGGAGGACNAGCT]

[-] EMBL AU088738             [TTTTTTGAAGAGGAAATGAAGAGGGTTTTCTATAATGGATATACAGTAGTGGAG CGATAAGTTGGATACAATGATACAATTGCTGCTGACAGCGTTTTAGACTTGAGAGCATGCACCATAGATCCAACAAGCTCATATGCAATATATACATAGCCTAGCATTGCTAAAAGGTCATATTCAGCTAACTCTTGCCAGCTCCAATCCCAGAAAAGCTTATCATGAACAGAAAAGGTTGAATGACCTTTACTCCAACGCGTTCCACGGACATTCCCAATCCAAACATCAAAACCGTTATCAGCAAGGATATACCCAAGTGATTGCTCAGCAGAGTTTATGAACCATGTGTCTCCTCCCTGAAAAAGA CATGTTGAAGAAAAACTGGAGGG CAGTACTATCTGCTGGTTTATTTTTGCCATGTGGGAATATGCTGAAGAGTTAGAGGAATCCATCTTTTGTTTCAACGTTGTGACTCCGTGCAGGTTACCGAGTTGGAGGACNAGCT]
[-] EMBL AU174368             [TTTTTTGAANAGGAAATGAAGAGGGTTTTCTATAATGGATATACAGTAGTGGAGCCGATAAGTTGGATACAATGATACAATTGCTGCTGACAGCGTTTTAGACTTGAGAGCATGCACCATAGATCCAACAAGCTCATATGCAATATATACATAGCCTAGCATTGCTAAAAGGTCATATTCAGCTAACTCTTGCCAGCTCCAATCCCAGAAAAGCTTATCATGAACAGAAAAGGTTGAATGACCTTTACTCCAACGCGTTCCACGGACATTCCCAATCCAAACATCAAAACCGTTATCAGCAAGGATATACCCAAGTGATTGCTCANCAGAGTTTATGAACCATGTGTCTCCTCCCTGAAAAAGACCATGTTGAAGAAAAACTGGAGGGCCAG ACTATCTGCTGGTTTATTTTTGCCATG GGGGATATGCT                                                                         ]
[-] EMBL AU223277             [TTTTTTGAAGAGGAAATGAAGAGGGTTTTCTATAATGGATATACAGTAGTGGAG CGATAAGTTGGATACAATGATACAATTGCTGCTGACAGCGTTTTAGACTTGAGAGCATGCACCATAGATCCAACAAGCTCATATGCAATATATACATAGCCTAGCATTGCTAAAAGGTCATATTCAGCTAACTCTTGCCAGCTCCAATCCCAGAAAAGCTTATCATGAACAGAAAAGGTTGAATGACCTTTACTCCAACGCGTTCCACGGACATTCCCAATCCAAACATCAAAACCGTTATCAGCAAGGATATACCCAAGTGATTGC                                                                                                                                                                                       ]




>consensus_12879#3
TTTTTTGAAGAGGAAATGAAGAGGGTTTTCTATAATGGATATACAGTAGTGGAGCGATAA
GTTGGATACAATGATACAATTGCTGCTGACAGCGTTTTAGACTTGAGAGCATGCACCATA
GATCCAACAAGCTCATATGCAATATATACATAGCCTAGCATTGCTAAAAGGTCATATTCA
GCTAACTCTTGCCAGCTCCAATCCCAGAAAAGCTTATCATGAACAGAAAAGGTTGAATGA
CCTTTACTCCAACGCGTTCCACGGACATTCCCAATCCAAACATCAAAACCGTTATCAGCA
AGGATATACCCAAGTGATTGCTCAGCAGAGTTTATGAACCATGTGTCTCCTCCCTGAAAA
AGACATGTTGAAGAAAAACTGGAGGGCAGTACTATCTGCTGGTTTATTTTTGCCATGTGG
GAATATGCTGAAGAGTTAGAGGAATCCATCTTTTGTTTCAACGTTGTGACTCCGTGCAGG
TTACCGAGTTGGAGGACNAGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12879#1      ------------------------------------------------------------
consensus_12879#2      -------TTTTTTTTTTAAAGAGGGTTTTCGTATAATGGATATACAGTAGTGGAGCGATA 53
consensus_12879#0      ------------------------------------------------------------
consensus_12879#3      TTTTTTGAAGAGGAAATGAAGAGGGTTTTC-TATAATGGATATACAGTAGTGGAGCGATA 59
                                                                                   

consensus_12879#1      ------------------------------------------------------TTTTTT 6
consensus_12879#2      AGTTGGATACAATGATACAATAGCTGCTGACAGCGTTTTAGACTTGAGAGCATGCACCAT 113
consensus_12879#0      ----------------------------------------------------TCCTTTTT 8
consensus_12879#3      AGTTGGATACAATGATACAATTGCTGCTGACAGCGTTTTAGACTTGAGAGCATGCACCAT 119
                                                                                  *

consensus_12879#1      TAG-ATCCNA--CAAGCTC----ATATGCAATATAT-ACAT-ACTC-ACATCGGG----A 52
consensus_12879#2      CAGCATCCCAACCAAGCTCCATCATGCACATCATATTACATCACTCCACATCGGGCAGCA 173
consensus_12879#0      TTAGATCCAA--CAAGCTC----ATATGCAATATAT-ACAT-ACTC-ACATCGGG----A 55
consensus_12879#3      -AG-ATCCAA--CAAGCTC----ATATGCAATATAT-ACATAGCCTAGCATTGCT---AA 167
                           **** *  *******    **   **  **** ****  *    *** *      *

consensus_12879#1      GAGGACCAATACTGTA--CAG-ATGTTTTT-ATTAT----ACACNTGAAGACATCCTAA- 103
consensus_12879#2      GGCACCCAATACTGTCACCAGCATGTTTTTCATTATCACCACATGCAAGACCATCCTTAA 233
consensus_12879#0      GAGGACCAATACTGTA--CAG-ATGTTTTT-ATTAT----ACACATGAAGACATCCTAA- 106
consensus_12879#3      AAGGTCATATTCAGCT---AA-CTCTTGCCAGCTCCAATCCCAGAAAAGCTTATCATGAA 223
                            *  ** * *     *   * **      *       **    *    *** * * 

consensus_12879#1      -TAGCTA--TTATGCCATCC-ATTTTCCC--TAAG-AAATCTT-ATTAGGTCC-AC-ATA 153
consensus_12879#2      TCAGCTCATTCATGCCATCCCATTTTCCCCTTAAGCAAATCTTCATTAGGTCCCACGATA 293
consensus_12879#0      -TAGCTA--TTATGCCATCC-ATTTTCCC--TAAG-AAATCTT-ATTAGGTCC-AC-ATA 156
consensus_12879#3      -CAGAAA----AGGTTGAATGACCTTTAC------------TCCAACGCGTTCCAC---G 263
                         **       * *       *  **  *            *  *    ** * **    

consensus_12879#1      AACATC-ATCTNTCGCCTT--CACGCTCATAA--CAAAATCAATATGGCC-ATAGTCACC 207
consensus_12879#2      AACATCCATCTTTCGCCTCTCCACGCTCATTAACCAAAATCAATATGGCCCATAGTCACC 353
consensus_12879#0      AACATC-ATCTTTCGCCTT--CACGCTCATAA--CAAAATCAATATGGCC-ATAGTCACC 210
consensus_12879#3      GACATT-CCCAATCCAAACATCAAAACCGTTA-TCAGCAAGGATATACCC--AAGTGATT 319
                        ****    *  **       **    * * *  **  *   ****  **   *** *  

consensus_12879#1      -AATGTACAGA---AGTTCTGGTTGTAGA--TCCCAGCTCTCTG--ATAGT-ACGCTGAA 258
consensus_12879#2      CAATGTACCAGCACAGTTCTAGGTGTAGCATCCCCAGCTCTCTGG-ATAGTCACGCTGAA 412
consensus_12879#0      -AATGTACAGA---AGTTCTGG-TGTAGA--TCCCAGCTCTCTG--ATAGT-ACGCTGAA 260
consensus_12879#3      --GCTCAGCAG---AGTTTATGAACCATGTGTCTC--CTCCCTGAAAAAGACATGTTGAA 372
                             *       ****   *    *     * *  *** ***  * **  * * ****

consensus_12879#1      CATCGGTTACA--TCAGCCAATGCATCAAGACCTCC-ATAT-CCCATCCATATGGGCCGT 314
consensus_12879#2      CATCGGTTACCATCCAGCCAATGCATCAAGACCTCCCATATTCCCATCCATATGGGCAGG 472
consensus_12879#0      CATCGGTTACA--TCAGCCAATGCATCAAGACCTCC-ATAT-CCCATCCATATGGGCAGT 316
consensus_12879#3      GAAAAACTGGAGGGCAGT-ACTATCTGCTGGTTTATTTTTGCCATGTGGGAATATGCTGA 431
                        *     *      ***  * *   *   *   *    *   *   *    **  ** * 

consensus_12879#1      GAT-TCTGGTATGCTGCTTAAGGGTCAAATTGCGGGAGGAACGCANATGACCGTAGCGCC 373
consensus_12879#2      GATATCTGGTATGCTGCTTA--GGTCACAATGCGGGAGAGACGCAAATGACCGTAGCGCC 530
consensus_12879#0      GAT-TCTGGTATGCTGCTTA--GGTCA-AATGCGGGAG-GACGCAAATGACCGTAGCGCC 371
consensus_12879#3      AGAGTTAGAGGAATCCATCTTTTGTTTCAACGTTGTGACTCCGTGCA-GGTTACCGAGTT 490
                           *  *         *     **   *  *  *      **   * *      * *  

consensus_12879#1      TTAGG-TTTCCCCAATAACCCCAATAGTCATNACTTTGGCGAAAGTGCCTTTCTGAATCC 432
consensus_12879#2      TTAGGGTTTTCCCAATAAACCAATTAATCATAATTTGGGAAAAGTGGCCTTTTT---CCC 587
consensus_12879#0      TTAAG--TTTCCCAATAACCCA--TAGTCATACTTT--GCGAAAGTGCCTTTCCTGATCA 425
consensus_12879#3      GGAGGACNAGCT------------------------------------------------ 502
                         * *     *                                                 

consensus_12879#1      TCCTGAAAACGATGGTGCAAATTTTTCGGTCGACTACTGATGAGTCCNACTCCCATAATA 492
consensus_12879#2      TGGATCATCTGACACAACAGATGG------------------------------------ 611
consensus_12879#0      TC-TGAAAAAGATGGTGCAGATTTTTTG-TCGATGATGGATGAGGTTCATACTCCAAATA 483
consensus_12879#3      ------------------------------------------------------------
                                                                                   

consensus_12879#1      ACCCTTGATGTATTGAAGCCCAGTTTCCCCCGTATCGCGCGATAANAACATTTGGTGGGG 552
consensus_12879#2      ------------------------------------------------------------
consensus_12879#0      ATAATCAATCC-TTGATGTATTGAAGCAACAGTTTTCCCCTGTAATCGCAGATAGCAAAT 542
consensus_12879#3      ------------------------------------------------------------
                                                                                   

consensus_12879#1      -GACACCCCAGNTGAGCCACTCGGGCGAAGAAGNTTCATAATTAGGAGCCCCCATNTGGC 611
consensus_12879#2      ------------------------------------------------------------
consensus_12879#0      TGTTGCAATCCACGTGTTCACCATCGCACAAAGAATCTACTATTTGAACCCCCATGTCGC 602
consensus_12879#3      ------------------------------------------------------------
                                                                                   

consensus_12879#1      T----------------------------------------------------------- 612
consensus_12879#2      ------------------------------------------------------------
consensus_12879#0      TACGGAAGTTCAGCTGGTGAATTCCCATAGTAACAAGCATCTGATCAAGATGCATGGCGA 662
consensus_12879#3      ------------------------------------------------------------
                                                                                   

consensus_12879#1      ------------------------------------------------------------
consensus_12879#2      ------------------------------------------------------------
consensus_12879#0      CTGCTCTGAGAACAAAACTAGCACTAACATGATCAAGATAAGAAATAGGACAAAGAAGTG 722
consensus_12879#3      ------------------------------------------------------------
                                                                                   

consensus_12879#1      ------------------------------------------------------------
consensus_12879#2      ------------------------------------------------------------
consensus_12879#0      CTGCAGAGCTAATCATTTTTACTATTTCGGGCATCGTCAAAGCCGCCAAACCCATTATAG 782
consensus_12879#3      ------------------------------------------------------------
                                                                                   

consensus_12879#1      ------------------------------------------------------------
consensus_12879#2      ------------------------------------------------------------
consensus_12879#0      TTCCCTGTGAATGCCCCACATATAGAATTTTGGACTGTGTGACTGTATACACATAGCCTA 842
consensus_12879#3      ------------------------------------------------------------
                                                                                   

consensus_12879#1      ------------------------------------------------------------
consensus_12879#2      ------------------------------------------------------------
consensus_12879#0      GCATTGCTAAAAGGTCATATTCAGCTAACTCTTGCCAGCTCCAATCCCAGAAAAGCTTAT 902
consensus_12879#3      ------------------------------------------------------------
                                                                                   

consensus_12879#1      ------------------------------------------------------------
consensus_12879#2      ------------------------------------------------------------
consensus_12879#0      CATGAACAGAAAAGGTTGAATGACCTTTACTCCAACGCGTTCCACGGACATTCCCAATCC 962
consensus_12879#3      ------------------------------------------------------------
                                                                                   

consensus_12879#1      ------------------------------------------------------------
consensus_12879#2      ------------------------------------------------------------
consensus_12879#0      AAACATCAAAACCGTTATCAGCAAGGATATACCCAAGTGATTGCTCAGCAGAGTTTATGA 1022
consensus_12879#3      ------------------------------------------------------------
                                                                                   

consensus_12879#1      ------------------------------------------------------------
consensus_12879#2      ------------------------------------------------------------
consensus_12879#0      ACCATGTGTCTCCTCCCTGAAAAAGACCATGTTGAAGAAAAACTGGAGGGCCAGTACTAT 1082
consensus_12879#3      ------------------------------------------------------------
                                                                                   

consensus_12879#1      ------------------------------------------------------------
consensus_12879#2      ------------------------------------------------------------
consensus_12879#0      CTGCTGCTTTATTTTTGCCATGTGGGATATGCTGAAGAGATAAAAGGAATCCATCTTTTG 1142
consensus_12879#3      ------------------------------------------------------------
                                                                                   

consensus_12879#1      ------------------------------------------------------------
consensus_12879#2      ------------------------------------------------------------
consensus_12879#0      TTTCAACGTTGTGCTCGGTGCAGGGGTAGCCGAGTGGCAGGAGCAGCTGGTCGCAGAGGC 1202
consensus_12879#3      ------------------------------------------------------------
                                                                                   

consensus_12879#1      ------------------------------------------------------------
consensus_12879#2      ------------------------------------------------------------
consensus_12879#0      CGCCGGAGCCGGAGCCGACGCGGCGGAGGGCGGCGGCGGCTGGGGAGGCTCCGGAGACGA 1262
consensus_12879#3      ------------------------------------------------------------
                                                                                   

consensus_12879#1      ------------------------------------------------------------
consensus_12879#2      ------------------------------------------------------------
consensus_12879#0      TGCGACCGCAGCAAGAGACGACGAGGAGGATCAGGGGGAGCGCTCCTCCGGGGCGTGGCC 1322
consensus_12879#3      ------------------------------------------------------------
                                                                                   

consensus_12879#1      ------------------------------------------------
consensus_12879#2      ------------------------------------------------
consensus_12879#0      CGCCATCGCCATCGCCAACGCCCGCCGCGCTTTGGCGGTGGTGTTGCT 1370
consensus_12879#3      ------------------------------------------------


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)