cluster # 12936

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Oryza sativa
cluster # 12936 cluster # 12936 Sequences # 11 consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12936#0 length = 1423 sequences # 7
consensus_12936#1 length = 661 sequences # 1

consensus_12936#2 length = 569 sequences # 1
consensus_12936#3 length = 482 sequences # 1
consensus_12936#4 length = 413 sequences # 1

consensusID : consensus_12936#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1423
fasta sequence

                              [CTCTTCTCTTGTTTCTTCCCATCCCATCCTCTTCTCCTCCGCATTTTGCTCTTCATTCATTTGTGCTGTGCTCTCCACGCGCCCTCGCCTCTCTTTCCTCCGATCCTCCGCTTCGTTCGAATCCCACAGGTCAGTTTGTGGTGTTCATATGGATCCCTTTTTCCGCAGAGCTTCCAGTGACCCCTTGTGCTTGGAAGACAACTCCGTCCAACATGGAATTGAAAGATGCCCATTCCTAAGGAACATCAATGAGCCTACAAGTTTTTCATTCTCGTCCGTTAATTTTCCTGTTCCTGCAAGAGGAGACAAGGGTCCAATTTTTGAAGATGGACCCAATTTTGACATGGCATTTCGAGTTTTCCATGGCCAAGATGGGGTTGTTCCACTTTCACATGGATCATTTGAGCGATTTGAGAAGCCAATGCCAAAGCCCAATCCTGAATTTAACCCCTTGGCTGCTAAAGCAGCTACCATCAGTCTCTCTGCATTTGGAGGTTTTTTCAGCTTTGGTGATTTCTCAAATAAGCGCAATAAGAAGAATAGTAACCAAAAGAAGCCCAACAACCTTCCCCAGAACGGAGGTCAGCCTAATAACCATGAAGCACTGAGCAATGAGTGGCTGGAAATGGGTCAATGCCCCCTGGCAAAGTCGTACAGGGCATTAAGTGGTGTCGTGCCCCTCGTCGCAAAGATGATGACACCCCCGGCTGGTATGAAACTGAGATGCCCACCT-GCAGTAGTTGCCGCCCGTGCAGCACTATCACGCACAGCCTTTGCCAAGGGGCTTCGTCCTCAGCCCCTACCGACGAAAATACTGGTGATGGCGTTGC-TT-GGTATGGCAGCAAACGTT-CCCCTTGGCATCTGGAGGGAGCACACGGAGAAATTCTCAGTGCAGTGGTTTGCCGCAGTCCATGCGGCGGTACCTTTCATAGGCATGCTCAGGAAGTC-TGTGCTGATGCCAAAGACAGCCATGGCGCTTACCATAGCTGCCTCAATATTGGGTCAGACAATTGGTTCGAGAGCTGAGCGTATCAGATTGAAGAGGGCAGCAAAGGTTGCTGCTGGTAGCCAGGGTGATGCTAGCACCAGAATGAGCCT-GAAAA-CCGGGAGATACACT-GATGATGTCCAGTTCTGGGATCCGCTTGCCCTCAGAGTTGAGAGTACCATAGGAACAGGAACTCCGGTTCTTGT-TCCAACTT-TCCATT-GAT-GAT-GTGCCTTGGGTTTGTTTCTTCGGTCGATTATTGTTGTATTCATTGTGTTGTGCCTTAGTCTTTATACTAAATATTACGTTGGATGCTTCTCCCATGAATCTGGGGTCCAAATTTCAGTGTACAATAAATTGCACGTGTACATTTCCGAAAAAAAAAAAGCTTAAGCTTTTTTTTTTTCACAACAAGCACACAACCACCTTTTACTGCCTGCA]

[+] EMBL CF318263             [CTCTTCTCTTGTTTCTTCCCATCCCATCCTCTTCTCCTCCGCATTTTGCTCTTCATTCATTTGTGCTGTGCTCTCCACGCGCCCTCGCCTCTCTTTCCTCCGATCCTCCGCTTCGTTCGAATCCCACAGGTCAGTTTGTGGTGTTCATATGGATCCCTTTTTCCGCAGAGCTTCCAGTGACCCCTTGTGCTTGGAAGACAACTCCGTCCAACATGGAATTGAAAGATGCCCATTCCTAAGGAACATCAATGAGCCTACAAGTTTTTCATTCTCGTCCGTTAATTTTCCTGTTCCTGCAAGAGGAGACAAGGGTCCAATTTTTGAAGATGGACCCAATTTTGACATGGCATTTCGAGTTTTCCATGGCCAAGATGGGGTTGTTCCACTTTCACATGGATCATTTGAGCGATTTGAGAAGCCAATGCCAAAGCCCAATCCTGAATTTAACCCCTTGGCTGCTAAAGCAGCTACCATCAGTCTCTCTGCATTTGGAGGTTTTTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AK072734             [         TGTTTCTTCCCATCCCATCCTCTTCTCCTCCGCATTTTGCTCTTCATTCATTTGTGCTGTGCTCTCCACGCGCCCTCGCCTCTCTTTCCTCCGATCCTCCGCTTCGTTCGAATCCCACAGGTCAG TTGTGGTGTTCATATGGATCCCTTTTTCCGCAGAGCTTCCAGTGACCCCTTGTGCTTGGAAGACAACTCCGTCCAACATGGAATTGAAAGATGCCCATTCCTAAGGAACATCAATGAGCCTACAAGTTTTTCATTCTCGTCCGTTAATTTTCCTGTTCCTGCAAGAGGAGACAAGGGTCCAATTTTTGAAGATGGACCCAATTTTGACATGGCATTTCGAGTTTTCCATGGCCAAGATGGGGTTGTTCCACTTTCACATGGATCATTTGAGCGATTTGAGAAGCCAATGCCAAAGCCCAATCCTGAATTTAACCCCTTGGCTGCTAAAGCAGCTACCATCAGTCTCTCTGCATTTGGAGGTTTTTTCAGCTTTGGTGATTTCTCAAATAAGCGCAATAAGAAGAATAGTAACCAAAAGAAGCCCAACAACCTTCCCCAGAACGGAGGTCAGCCTAATAACCATGAAGCACTGAGCAATGAGTGGCTGGAAATGGGTCAATGCCCCCTGGCAAAGTCGTACAGGGCATTAAGTGGTGTCGTGCCCCTCGTCGCAAAGATGATGACACCCCCGGCTGGTATGAAACTGAGATGCCCACCT GCAGTAGTTGCCGCCCGTGCAGCACTATCACGCACAGCCTTTGCCAAGGGGCTTCGTCCTCAGCCCCTACCGACGAAAATACTGGTGATGGCGTTGC TT GGTATGGCAGCAAACGTT CCCCTTGGCATCTGGAGGGAGCACACGGAGAAATTCTCAGTGCAGTGGTTTGCCGCAGTCCATGCGGCGGTACCTTTCATAGGCATGCTCAGGAAGTC TGTGCTGATGCCAAAGACAGCCATGGCGCTTACCATAGCTGCCTCAATATTGGGTCAGACAATTGGTTCGAGAGCTGAGCGTATCAGATTGAAGAGGGCAGCAAAGGTTGCTGCTGGTAGCCAGGGTGATGCTAGCACCAGAATGAGCCT GAAAA CCGGGAGATACACT GATGATGTCCAGTTCTGGGATCCGCTTGCCCTCAGAGTTGAGAGTACCATAGGAACAGGAACTCCGGTTCTTGT TCCAACTT TCCATT GAT GAT GTGCCTTGGGTTTGTTTCTTCGGTCGATTATTGTTGTATTCATTGTGTTGTGCCTTAGTCTTTATACTAAATATTACGTTGGATGCTTCTCCCATGAATCTGGGGTCCAAATTTCAGTGTACAATAAATTGCACGTG                                                                           ]
[+] EMBL AK104136             [                                TCTCCTCCGCATTTTGCTCTTCATTCATTTGTGCTGTGCTCTCCACGCGCCCTCGCCTCTCTTTCCTCCGATCCTCCGCTTCGTTCGAATCCCACAGGTCAGTTTGTGGTGTTCATATGGATCCCTTTTTCCGCAGAGCTTCCAGTGACCCCTTGTGCTTGGAAGACAACTCCGTCCAACATGGAATTGAAAGATGCCCATTCCTAAGGAACATCAATGAGCCTACAAGTTTTTCATTCTCGTCCGTTAATTTTCCTGTTCCTGCAAGAGGAGACAAGGGTCCAATTTTTGAAGATGGACCCAATTTTGACATGGCATTTCGAGTTTTCCATGGCCAAGATGGGGTTGTTCCACTTTCACATGGATCATTTGAGCGATTTGAGAAGCCAATGCCAAAGCCCAATCCTGAATTTAACCCCTTGGCTGCTAAAGCAGCTACCATCAGTCTCTCTGCATTTGGAGGTTTTTTCAGCTTTGGTGATTTCTCAAATAAGCGCAATAAGAAGAATAGTAACCAAAAGAAGCCCAACAACCTTCCCCAGAACGGAGGTCAGCCTAATAACCATGAAGCACTGAGCAATGAGTGGCTGGAAATGGGTCAATGCCCCCTGGCAAAGTCGTACAGGGCATTAAGTGGTGTCGTGCCCCTCGTCGCAAAGATGATGACACCCCCGGCTGGTATGAAACTGAGATGCCCACCT GCAGTAGTTGCCGCCCGTGCAGCACTATCACGCACAGCCTTTGCCAAGGGGCTTCGTCCTCAGCCCCTACCGACGAAAATACTGGTGATGGCGTTGC TT GGTATGGCAGCAAACGTT CCCCTTGGCATCTGGAGGGAGCACACGGAGAAATTCTCAGTGCAGTGGTTTGCCGCAGTCCATGCGGCGGTACCTTTCATAGGCATGCTCAGGAAGTC TGTGCTGATGCCAAAGACAGCCATGGCGCTTACCATAGCTGCCTCAATATTGGGTCAGACAATTGGTTCGAGAGCTGAGCGTATCAGATTGAAGAGGGCAGCAAAGGTTGCTGCTGGTAGCCAGGGTGATGCTAGCACCAGAATGAGCCT GAAAA CCGGGAGATACACT GATGATGTCCAGTTCTGGGATCCGCTTGCCCTCAGAGTTGAGAGTACCATAGGAACAGGAACTCCGGTTCTTGT TCCAACTT TCCATT GAT GAT GTGCCTTGGGTTTGTTTCTTCGGTCGATTATTGTTGTATTCATTGTGTTGTGCCTTAGTCTTTATACTAAATATTACGTTGGA                                                                                                                                 ]
[+] EMBL AU108703             [                                                                                    TCGCCTCTCTTTCCTCCGATCCTCCGCTTCGTTCGAATCCCACAGGTCAGTTTGTGGTGTTCATATGGATCCCTTTTTCCGCAGAGCTTCCAGTGACCCCTTGTGCTTGGAAGACAACTCCGTCCAACATGGAATTGAAAGATGCCCATTCCTAAGGAACATCAATGAGCCTACAAGTTTTTCATTCTCGTCCGTTAATTTTCCTGTTCCTGCAAGAGGAGACAAGGGTCCAATTTTTGAAGATGGACCCAATTTTGACATGGCATTTCGAGTTTTCCATGGCCAAGATGGGGTTGTTCCACTTTCACATGGATCATTTGAGCGATTTGAGAAGCCAATGCCAAAGCCCAATCCTGAATTTAACCCCTTGGCTGCTAAAGCAGCTACCATCAGTCTCTCTGCATTTGGAGGTTTTTTCAGCTTTGGTGATTTCTCAAATAAGCGCAATAAGAAGAATAGTAACCAAAAGAAGCCCAACAACCTTCCCCAGAACGGAGGTCAGCCTAATAACCATGAAGCACTGAGCAATGAGTGGCTGGAAATGGGTCAATGCCCCCTGGCAAAGTCGTACAGGGCATTAAGTGGTGTCGTGCCCCTCGTCGCAAAGATGATGACACCCCCGGCTGGTATGAAACTGAGATGCCCAACTGGCAGTAGTTG CGNCCGTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AU108702             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GTGGCTGGAAATGGGTCAATGCCCCCTGGCAAAGTCGTACAGGGCATTAAGTGGTGTCGTGCCCCTCGTCGCAAAGATGATGACACCCCCGGCTGGTATGAAACTGAGATGCCCACCT GCAGTAGTTGCCGCCCGTGCAGCACTATCACGCACAGCCTTTGCCAAGGGGCTTCGTCCTCAGCCCCTACCGACGAAAATACTGGTGATGGCGTTGC TT GGTATGGCAGCAAACGTT CCCCTTGGCATCTGGAGGGAGCACACGGAGAAATTCTCAGTGCAGTGGTTTGCCGCAGTCCATGCGGCGGTACCTTTCATAGGCATGCTCAGGAAGTC TGTGCTGATGCCAAAGACAGCCATGGCGCTTACCATAGCTGCCTCAATATTGGGTCAGACAATTGGTTCGAGAGCTGAGCGTATCAGATTGAAGAGGGCAGCAAAGGTTGCTGCTGGTAGCCAGGGTGATGCTAGCACCAGAATGAGCCT GAAAA CCGGGAGATACACT GATGATGTCCAGTTCTGGGATCCGCTTGCCCTCAGAGTTGAGAGTACCATAGGAACAGGAACTCCGGTTCTTGT TCCAACTT TCCATT GAT GAT GTGCCTTGGGTTTGTTTCTTCGGTCGATTATTGTTGTATTCATTGTGTTGTGCCTTAGTCTTTATACTAAATATTACGTTGGATGCTTCTCCCATGAATCTGGGGTCCAAAaaaaa                                                                                                ]
[+] EMBL BM038199             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 gnTGATGGCTTTGCGTTNGTTAT GCAGCCAACGTTCCCCCTTGGCATCTGGAGGGAGCACACGGAGAAATTCTCAGTGCAGTGGGTT CC CAGTCCAT CGGCGGTACCTTTCATAGGCATGCTCAGGAA TCTTGTGCTGATGCC AAGACAGCCATGGCGCTTACCATAGCGGCCTCAATATTGGGTCAGACNATTGGTTCGAGAGCTGAGCGTATCAGATTGAAGAGGGCAGCAAAGGTTGCTGCTGGTAGCCAGGGTGATGCTAGCACCAGAATGAACCTGGAAAACCCGGGAGATACACTGGATGATGTCCAGTTCTGGGATCCGCTTGCCCTCAGAGTTGAGAGTACCATAGGAGCAGGAACTCCGGTTCTTGTGTCCCACTTGTCCATTGGATGGATGGTGCCTTGGGTTTGTTTCTTCGGTCGATTATTGTTGTATTCATTGTGTTGTGCCTTAGTCTTTATACTAAATATTACGTTGGATGCTTCTCCCATGAATCTGGGGTCC AATTTCAGTGTACCAT CCCCGCACGTGTACATTTCCGAAAAAAA                                                          ]
[+] EMBL AU165228             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GTGCCTTAGTCTTTATACTAAATATTACGTTGGATGCTTCTCCCATGAATCTGGGGTCCAAATTTCAGTGTACAATAAATTGCACGTGTACATTTCCGAAAAAAAAAAAGCTTAAGCTTTTTTTTTTTCACAACAAGCACACAACCACCTTTTACTGCCTGCA]




>consensus_12936#0
CTCTTCTCTTGTTTCTTCCCATCCCATCCTCTTCTCCTCCGCATTTTGCTCTTCATTCAT
TTGTGCTGTGCTCTCCACGCGCCCTCGCCTCTCTTTCCTCCGATCCTCCGCTTCGTTCGA
ATCCCACAGGTCAGTTTGTGGTGTTCATATGGATCCCTTTTTCCGCAGAGCTTCCAGTGA
CCCCTTGTGCTTGGAAGACAACTCCGTCCAACATGGAATTGAAAGATGCCCATTCCTAAG
GAACATCAATGAGCCTACAAGTTTTTCATTCTCGTCCGTTAATTTTCCTGTTCCTGCAAG
AGGAGACAAGGGTCCAATTTTTGAAGATGGACCCAATTTTGACATGGCATTTCGAGTTTT
CCATGGCCAAGATGGGGTTGTTCCACTTTCACATGGATCATTTGAGCGATTTGAGAAGCC
AATGCCAAAGCCCAATCCTGAATTTAACCCCTTGGCTGCTAAAGCAGCTACCATCAGTCT
CTCTGCATTTGGAGGTTTTTTCAGCTTTGGTGATTTCTCAAATAAGCGCAATAAGAAGAA
TAGTAACCAAAAGAAGCCCAACAACCTTCCCCAGAACGGAGGTCAGCCTAATAACCATGA
AGCACTGAGCAATGAGTGGCTGGAAATGGGTCAATGCCCCCTGGCAAAGTCGTACAGGGC
ATTAAGTGGTGTCGTGCCCCTCGTCGCAAAGATGATGACACCCCCGGCTGGTATGAAACT
GAGATGCCCACCTGCAGTAGTTGCCGCCCGTGCAGCACTATCACGCACAGCCTTTGCCAA
GGGGCTTCGTCCTCAGCCCCTACCGACGAAAATACTGGTGATGGCGTTGCTTGGTATGGC
AGCAAACGTTCCCCTTGGCATCTGGAGGGAGCACACGGAGAAATTCTCAGTGCAGTGGTT
TGCCGCAGTCCATGCGGCGGTACCTTTCATAGGCATGCTCAGGAAGTCTGTGCTGATGCC
AAAGACAGCCATGGCGCTTACCATAGCTGCCTCAATATTGGGTCAGACAATTGGTTCGAG
AGCTGAGCGTATCAGATTGAAGAGGGCAGCAAAGGTTGCTGCTGGTAGCCAGGGTGATGC
TAGCACCAGAATGAGCCTGAAAACCGGGAGATACACTGATGATGTCCAGTTCTGGGATCC
GCTTGCCCTCAGAGTTGAGAGTACCATAGGAACAGGAACTCCGGTTCTTGTTCCAACTTT
CCATTGATGATGTGCCTTGGGTTTGTTTCTTCGGTCGATTATTGTTGTATTCATTGTGTT
GTGCCTTAGTCTTTATACTAAATATTACGTTGGATGCTTCTCCCATGAATCTGGGGTCCA
AATTTCAGTGTACAATAAATTGCACGTGTACATTTCCGAAAAAAAAAAAGCTTAAGCTTT
TTTTTTTTCACAACAAGCACACAACCACCTTTTACTGCCTGCA

consensusID : consensus_12936#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 661
fasta sequence

                              [CATGGACTGAGGAGTAGAAATTCCCATCCCATCCTCTTCTCCTCCGCATTTTGCTCTTCATTCATTTGTGCTGTGCTCTCCACGCGCCCTCGCCTCTCTTTCCTCCGATCCTCCGCTTCGTTCGAATCCCACAGGTCAGTTTGTGGTGTTCATATGGATCCCTTTTTCCGCAGAGCTTCCAGTGACCCCTTGTGCTTGGAAGACAACTCCGTCCAACATGGAATTGAAAGATGCCCATTCCTAAGGAACATCAATGAGCCTACAAGTTTTTCATTCTCGTCCGTTAATTTTCCTGTTCCTGCAAGAGGAGACAAGGGTCCAATTTTTGAAGATGGACCCAATTTTGACATGGCATTTCGAGTTTTCCATGGCCAAGATGGGGTTGTTCCACTTTCACATGGATCATTTGAGCGATTTGAGAAGCCAATGCCAAAGCCCAATCCTGAATTTAACCCCTTGGCTGCTAAAGCAGCTACCATCAGTCTCTCTGCATTTGGAGGTTTTTTCAGCTTTGGTGATTTCTCAAATAAGCGCAATAAGAAGAATAGTAACCAAAAGAAGCCCAACAACCTTCCCCAGAACGGAGGTCAGCCTAATAACCATGAAGCACTGAGCAATGAGTGGCTGGAAATGGGTCAATGCCCCCTGGCAAAGTCGTACA]

[+] EMBL CF320517             [CATGGACTGAGGAGTAGAAATTCCCATCCCATCCTCTTCTCCTCCGCATTTTGCTCTTCATTCATTTGTGCTGTGCTCTCCACGCGCCCTCGCCTCTCTTTCCTCCGATCCTCCGCTTCGTTCGAATCCCACAGGTCAGTTTGTGGTGTTCATATGGATCCCTTTTTCCGCAGAGCTTCCAGTGACCCCTTGTGCTTGGAAGACAACTCCGTCCAACATGGAATTGAAAGATGCCCATTCCTAAGGAACATCAATGAGCCTACAAGTTTTTCATTCTCGTCCGTTAATTTTCCTGTTCCTGCAAGAGGAGACAAGGGTCCAATTTTTGAAGATGGACCCAATTTTGACATGGCATTTCGAGTTTTCCATGGCCAAGATGGGGTTGTTCCACTTTCACATGGATCATTTGAGCGATTTGAGAAGCCAATGCCAAAGCCCAATCCTGAATTTAACCCCTTGGCTGCTAAAGCAGCTACCATCAGTCTCTCTGCATTTGGAGGTTTTTTCAGCTTTGGTGATTTCTCAAATAAGCGCAATAAGAAGAATAGTAACCAAAAGAAGCCCAACAACCTTCCCCAGAACGGAGGTCAGCCTAATAACCATGAAGCACTGAGCAATGAGTGGCTGGAAATGGGTCAATGCCCCCTGGCAAAGTCGTACA]




>consensus_12936#1
CATGGACTGAGGAGTAGAAATTCCCATCCCATCCTCTTCTCCTCCGCATTTTGCTCTTCA
TTCATTTGTGCTGTGCTCTCCACGCGCCCTCGCCTCTCTTTCCTCCGATCCTCCGCTTCG
TTCGAATCCCACAGGTCAGTTTGTGGTGTTCATATGGATCCCTTTTTCCGCAGAGCTTCC
AGTGACCCCTTGTGCTTGGAAGACAACTCCGTCCAACATGGAATTGAAAGATGCCCATTC
CTAAGGAACATCAATGAGCCTACAAGTTTTTCATTCTCGTCCGTTAATTTTCCTGTTCCT
GCAAGAGGAGACAAGGGTCCAATTTTTGAAGATGGACCCAATTTTGACATGGCATTTCGA
GTTTTCCATGGCCAAGATGGGGTTGTTCCACTTTCACATGGATCATTTGAGCGATTTGAG
AAGCCAATGCCAAAGCCCAATCCTGAATTTAACCCCTTGGCTGCTAAAGCAGCTACCATC
AGTCTCTCTGCATTTGGAGGTTTTTTCAGCTTTGGTGATTTCTCAAATAAGCGCAATAAG
AAGAATAGTAACCAAAAGAAGCCCAACAACCTTCCCCAGAACGGAGGTCAGCCTAATAAC
CATGAAGCACTGAGCAATGAGTGGCTGGAAATGGGTCAATGCCCCCTGGCAAAGTCGTAC
A

consensusID : consensus_12936#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 569
fasta sequence

                              [CGACGAAAATACTGGTGATGGCGTTGCTTGGTATGGCAGCAAACGTTCCCCTTGGCATCTGGAGGGAGCACACGGAGAAATTCTCAGTGCAGTGGTTTGCCGCAGTCCATGCGGCGGTACCTTTCATAGGCATGCTCAGGAAGTCTGTGCTGATGCCAAAGACAGCCATGGCGCTTACCATAGCTGCCTCAATATTGGGTCAGACAATTGGTTCGAGAGCTGAGCGTATCAGATTGAAGAGGGCAGCAAAGGTTGCTGCTGGTAGCCAGGGTGATGCTAGCACCAGAATGAGCCTGAAAACCGGGAGATACACTGATGATGTCCAGTTCTGGGATCCGCTTGCCCTCAGAGTTGAGAGTACCATAGGAACAGGAACTCCGGTTCTTGTTCCAACTTTCCATTGATGATGTGCCTTGGGTTTGTTTCTTCGGTCGATTATTGTTGTATTCATTGTGTTGTGCCTTAGTCTTTATACTAAATATTACGTTGGATGCTTCTCCCATGAATCTGGGGTCCAAAAAAAAAAAAAAAAAACACTGTCATGCCGTTAGGTAGCGTATCGTTGACAG]

[-] EMBL CF320516             [CGACGAAAATACTGGTGATGGCGTTGCTTGGTATGGCAGCAAACGTTCCCCTTGGCATCTGGAGGGAGCACACGGAGAAATTCTCAGTGCAGTGGTTTGCCGCAGTCCATGCGGCGGTACCTTTCATAGGCATGCTCAGGAAGTCTGTGCTGATGCCAAAGACAGCCATGGCGCTTACCATAGCTGCCTCAATATTGGGTCAGACAATTGGTTCGAGAGCTGAGCGTATCAGATTGAAGAGGGCAGCAAAGGTTGCTGCTGGTAGCCAGGGTGATGCTAGCACCAGAATGAGCCTGAAAACCGGGAGATACACTGATGATGTCCAGTTCTGGGATCCGCTTGCCCTCAGAGTTGAGAGTACCATAGGAACAGGAACTCCGGTTCTTGTTCCAACTTTCCATTGATGATGTGCCTTGGGTTTGTTTCTTCGGTCGATTATTGTTGTATTCATTGTGTTGTGCCTTAGTCTTTATACTAAATATTACGTTGGATGCTTCTCCCATGAATCTGGGGTCCAAAAAAAAAAAAAAAAAACACTGTCATGCCGTTAGGTAGCGTATCGTTGACAG]




>consensus_12936#2
CGACGAAAATACTGGTGATGGCGTTGCTTGGTATGGCAGCAAACGTTCCCCTTGGCATCT
GGAGGGAGCACACGGAGAAATTCTCAGTGCAGTGGTTTGCCGCAGTCCATGCGGCGGTAC
CTTTCATAGGCATGCTCAGGAAGTCTGTGCTGATGCCAAAGACAGCCATGGCGCTTACCA
TAGCTGCCTCAATATTGGGTCAGACAATTGGTTCGAGAGCTGAGCGTATCAGATTGAAGA
GGGCAGCAAAGGTTGCTGCTGGTAGCCAGGGTGATGCTAGCACCAGAATGAGCCTGAAAA
CCGGGAGATACACTGATGATGTCCAGTTCTGGGATCCGCTTGCCCTCAGAGTTGAGAGTA
CCATAGGAACAGGAACTCCGGTTCTTGTTCCAACTTTCCATTGATGATGTGCCTTGGGTT
TGTTTCTTCGGTCGATTATTGTTGTATTCATTGTGTTGTGCCTTAGTCTTTATACTAAAT
ATTACGTTGGATGCTTCTCCCATGAATCTGGGGTCCAAAAAAAAAAAAAAAAAACACTGT
CATGCCGTTAGGTAGCGTATCGTTGACAG

consensusID : consensus_12936#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 482
fasta sequence

                              [TTCATTCATTTGTGCTGTGCTCTCCACGCGCCCTCGCCTCTCTTTCCTCCGATCCTCCGCTTCGTTCGAATCCCACAGGTGAGGTGACCTCTTCTCTCCAGTCTCCTCTCCTTAGTAGGATTAGGATCATTACGAATTTAGGATCGAGAATATAGGATTATGAACCAGTAGTATTAGGATTATGTTTTCTTCGATTCTTTTTCTCCTTCAAATCAATTCCCAATTCGATTTAGGGTTGACGGATACGCGAGCAGGGATAGCCCTCCCGCCCGCAGAAAGATTGGGCTTTCTTGGTTTCCCTGTCGTAATCCCTTCTCTCCAGCCAACGCGGTGAAAATTTTGTTTCGGTGGGGGTGGGGTGGGTGGTTGCCGGGTAGGTGCTGGTGCATCTGCTTTCAGTTTCACCACCACCATGGATTGGCCGCTAAACATATACTGATATACACCTGTTTCCTGTCCCCTACCCCTAGGCTAGACTACTA]

[+] EMBL AK062821             [TTCATTCATTTGTGCTGTGCTCTCCACGCGCCCTCGCCTCTCTTTCCTCCGATCCTCCGCTTCGTTCGAATCCCACAGGTGAGGTGACCTCTTCTCTCCAGTCTCCTCTCCTTAGTAGGATTAGGATCATTACGAATTTAGGATCGAGAATATAGGATTATGAACCAGTAGTATTAGGATTATGTTTTCTTCGATTCTTTTTCTCCTTCAAATCAATTCCCAATTCGATTTAGGGTTGACGGATACGCGAGCAGGGATAGCCCTCCCGCCCGCAGAAAGATTGGGCTTTCTTGGTTTCCCTGTCGTAATCCCTTCTCTCCAGCCAACGCGGTGAAAATTTTGTTTCGGTGGGGGTGGGGTGGGTGGTTGCCGGGTAGGTGCTGGTGCATCTGCTTTCAGTTTCACCACCACCATGGATTGGCCGCTAAACATATACTGATATACACCTGTTTCCTGTCCCCTACCCCTAGGCTAGACTACTA]




>consensus_12936#3
TTCATTCATTTGTGCTGTGCTCTCCACGCGCCCTCGCCTCTCTTTCCTCCGATCCTCCGC
TTCGTTCGAATCCCACAGGTGAGGTGACCTCTTCTCTCCAGTCTCCTCTCCTTAGTAGGA
TTAGGATCATTACGAATTTAGGATCGAGAATATAGGATTATGAACCAGTAGTATTAGGAT
TATGTTTTCTTCGATTCTTTTTCTCCTTCAAATCAATTCCCAATTCGATTTAGGGTTGAC
GGATACGCGAGCAGGGATAGCCCTCCCGCCCGCAGAAAGATTGGGCTTTCTTGGTTTCCC
TGTCGTAATCCCTTCTCTCCAGCCAACGCGGTGAAAATTTTGTTTCGGTGGGGGTGGGGT
GGGTGGTTGCCGGGTAGGTGCTGGTGCATCTGCTTTCAGTTTCACCACCACCATGGATTG
GCCGCTAAACATATACTGATATACACCTGTTTCCTGTCCCCTACCCCTAGGCTAGACTAC
TA

consensusID : consensus_12936#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 413
fasta sequence

                              [GNTGGCAGGGACNTCNGGCACGAGTTCATTCATTTNGTTGCTTGTTGCTCTCCACGCGCCCTCGCCTCTCTTTCCTCCGATCCTCCGCTTCGTTCGAATCCCACAGGTCAGTTTGTGGTGTTCATATGGATCCCTTTTTCCGCAGAGCTTCCAGTGACCCCTTGTGCTTGGAAGACAACTCCGNTCCAACATGGAATTGAAAGATGCCCATTCCTAAGGAACATCAATGAGCCTNACAAGTTTTTCATTCTCGTCCGTTAATTTTCCTGTTCCTGCAAGAGGAGACAAGGTCCNAATTTTTGAAGATGGACCCNAATTTTGACATGGCAATTTCGAGTTTTCCATGGCCAAGATGGTTGTTCCACTTTCACATGGATCATTTGAGCGATTTGAGAAGCCNAATGCCNAAAGCC]

[+] EMBL AA752921             [GNTGGCAGGGACNTCNGGCACGAGTTCATTCATTTNGTTGCTTGTTGCTCTCCACGCGCCCTCGCCTCTCTTTCCTCCGATCCTCCGCTTCGTTCGAATCCCACAGGTCAGTTTGTGGTGTTCATATGGATCCCTTTTTCCGCAGAGCTTCCAGTGACCCCTTGTGCTTGGAAGACAACTCCGNTCCAACATGGAATTGAAAGATGCCCATTCCTAAGGAACATCAATGAGCCTNACAAGTTTTTCATTCTCGTCCGTTAATTTTCCTGTTCCTGCAAGAGGAGACAAGGTCCNAATTTTTGAAGATGGACCCNAATTTTGACATGGCAATTTCGAGTTTTCCATGGCCAAGATGGTTGTTCCACTTTCACATGGATCATTTGAGCGATTTGAGAAGCCNAATGCCNAAAGCC]




>consensus_12936#4
GNTGGCAGGGACNTCNGGCACGAGTTCATTCATTTNGTTGCTTGTTGCTCTCCACGCGCC
CTCGCCTCTCTTTCCTCCGATCCTCCGCTTCGTTCGAATCCCACAGGTCAGTTTGTGGTG
TTCATATGGATCCCTTTTTCCGCAGAGCTTCCAGTGACCCCTTGTGCTTGGAAGACAACT
CCGNTCCAACATGGAATTGAAAGATGCCCATTCCTAAGGAACATCAATGAGCCTNACAAG
TTTTTCATTCTCGTCCGTTAATTTTCCTGTTCCTGCAAGAGGAGACAAGGTCCNAATTTT
TGAAGATGGACCCNAATTTTGACATGGCAATTTCGAGTTTTCCATGGCCAAGATGGTTGT
TCCACTTTCACATGGATCATTTGAGCGATTTGAGAAGCCNAATGCCNAAAGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12936#0      CTCTTCTCTTGTTTCTTCCCATCCCATCCTCTTCTCCTCCGCATTTTGCTCTTCATTCAT 60
consensus_12936#2      ------------------------------------------------------------
consensus_12936#1      ------------------------------------------------------------
consensus_12936#4      ------------------------------------------------------------
consensus_12936#3      ------------------------------------------------------------
                                                                                   

consensus_12936#0      TTGTGCTGTGCTCTCCACGCGCCCTCGCCTCTCTTTCCTCCGATCCTCCGCTTCGTTCGA 120
consensus_12936#2      ------------------------------------------------------------
consensus_12936#1      ------------------------------------------------------------
consensus_12936#4      ------------------------------------------------------------
consensus_12936#3      ------------------------------------------------------------
                                                                                   

consensus_12936#0      ATCCCACAGGTCAGTTTGTGGTGTTCATATGGATCCCTTTTTCCGCAGAGCTTCCAGTGA 180
consensus_12936#2      ------------------------------------------------------------
consensus_12936#1      ------------------------------------------------------------
consensus_12936#4      ------------------------------------------------------------
consensus_12936#3      ------------------------------------------------------------
                                                                                   

consensus_12936#0      CCCCTTGTGCTTGGAAGACAACTCCGTCCAACATGGAATTGAAAGATGCCCATTCCTAAG 240
consensus_12936#2      ------------------------------------------------------------
consensus_12936#1      ------------------------------------------------------------
consensus_12936#4      ------------------------------------------------------------
consensus_12936#3      ------------------------------------------------------------
                                                                                   

consensus_12936#0      GAACATCAATGAGCCTACAAGTTTTTCATTCTCGTCCGTTAATTTTCCTGTTCCTGCAAG 300
consensus_12936#2      ------------------------------------------------------------
consensus_12936#1      ------------------------------------------------------------
consensus_12936#4      ------------------------------------------------------------
consensus_12936#3      ------------------------------------------------------------
                                                                                   

consensus_12936#0      AGGAGACAAGGGTCCAATTTTTGAAGATGGACCCAATTTTGACATGGCATTTCGAGTTTT 360
consensus_12936#2      ------------------------------------------------------------
consensus_12936#1      ------------------------------------------------------------
consensus_12936#4      ------------------------------------------------------------
consensus_12936#3      ------------------------------------------------------------
                                                                                   

consensus_12936#0      CCATGGCCAAGATGGGGTTGTTCCACTTTCACATGGATCATTTGAGCGATTTGAGAAGCC 420
consensus_12936#2      ------------------------------------------------------------
consensus_12936#1      ------------------------------------------------------------
consensus_12936#4      ------------------------------------------------------------
consensus_12936#3      ------------------------------------------------------------
                                                                                   

consensus_12936#0      AATGCCAAAGCCCAATCCTGAATTTAACCCCTTGGCTGCTAAAGCAGCTACCATCAGTCT 480
consensus_12936#2      ------------------------------------------------------------
consensus_12936#1      ------------------------------------------------------------
consensus_12936#4      ------------------------------------------------------------
consensus_12936#3      ------------------------------------------------------------
                                                                                   

consensus_12936#0      CTCTGCATTTGGAGGTTTTTTCAGCTTTGGTGATTTCTCAAATAAGCGCAATAAGAAGAA 540
consensus_12936#2      ------------------------------------------------------------
consensus_12936#1      ------------------------------------------------------------
consensus_12936#4      ------------------------------------------------------------
consensus_12936#3      ------------------------------------------------------------
                                                                                   

consensus_12936#0      TAGTAACCAAAAGAAGCCCAACAACCTTCCCCAGAACGGAGGTCAGCCTAATAACCATGA 600
consensus_12936#2      ------------------------------------------------------------
consensus_12936#1      ------------------------------------------------------------
consensus_12936#4      ------------------------------------------------------------
consensus_12936#3      ------------------------------------------------------------
                                                                                   

consensus_12936#0      AGCACTGAGCAATGAGTGGCTGGAAATGGGTCAATGCCCCCTGGCAAAGTCGTACAGGGC 660
consensus_12936#2      ------------------------------------------------------------
consensus_12936#1      ------------------------------------------------------------
consensus_12936#4      ------------------------------------------------------------
consensus_12936#3      ------------------------------------------------------------
                                                                                   

consensus_12936#0      ATTAAGTGGTGTCGTGCCCCTCGTCGCAAAGATGATGACACCCCCGGCTGGTATGAAACT 720
consensus_12936#2      ------------------------------------------------------------
consensus_12936#1      ------------------------------------------------------------
consensus_12936#4      ------------------------------------------------------------
consensus_12936#3      ------------------------------------------------------------
                                                                                   

consensus_12936#0      GAGATGCCCACCTGCAGTAGTTGCCGCCCGTGCAGCACTATCACGCACAGCCTTTGCCAA 780
consensus_12936#2      ------------------------------------------------------------
consensus_12936#1      ------------------------------------------------------------
consensus_12936#4      ------------------------------------------------------------
consensus_12936#3      ------------------------------------------------------------
                                                                                   

consensus_12936#0      GGGGCTTCGTCCTCAGCCCCTACCGACGAAAATACTGGTGATGGCGTTGCTTGGTATGGC 840
consensus_12936#2      -----------------------CGACGAAAATACTGGTGATGGCGTTGCTTGGTATGGC 37
consensus_12936#1      --------------------CATGGACTGAGGAGTAGAAATTCCCATCCCATCCTCTTCT 40
consensus_12936#4      --------------------------------------------GNTGGCAGGGACNTCN 16
consensus_12936#3      ------------------------------------------------------------
                                                                                   

consensus_12936#0      AGCAAACGTTCCCCTTGGCATCTGGAGGGAGCACACGGAGAAATTCTCAGTGCAGTGGTT 900
consensus_12936#2      AGCAAACGTTCCCCTTGGCATCTGGAGGGAGCACACGGAGAAATTCTCAGTGCAGTGGTT 97
consensus_12936#1      CCTCCGCATTTTGCTCTTCATTCATTTGTGCTGTGCTCTCCACGCGCCCTCGCCTCTCTT 100
consensus_12936#4      GGCACGAGTTCA----TTCATTTNGTTGCTTGTTGCTCTCCACGCGCCCTCGCCTCTCTT 72
consensus_12936#3      ----------------TTCATTCATTTGTGCTGTGCTCTCCACGCGCCCTCGCCTCTCTT 44
                                         ***      *       *     *     *   **     **

consensus_12936#0      TGCCGCAGTCCAT-GCGGCGGT-ACCTTTCATAGGCATGCTCAGGAAGTCTGTGCTGATG 958
consensus_12936#2      TGCCGCAGTCCAT-GCGGCGGT-ACCTTTCATAGGCATGCTCAGGAAGTCTGTGCTGATG 155
consensus_12936#1      TCCTCCGATCCTCCGCTTCGTTCGAATCCCACAGGTCAGTTTGTGGTGTTCATATGGATC 160
consensus_12936#4      TCCTCCGATCCTCCGCTTCGTTCGAATCCCACAGGTCAGTTTGTGGTGTTCATATGGATC 132
consensus_12936#3      TCCTCCGATCCTCCGCTTCGTTCGAATCCCACAGGTGAGGTGACCTCTTCTCTCCAGTCT 104
                       * *  *  ***   **  ** *    *  ** ***   * *       *   *   *   

consensus_12936#0      CCAAAGACAGCCATGGCGCTTACCATAGCTGCCTCAATATTGGGTCAGACAATTGGTTCG 1018
consensus_12936#2      CCAAAGACAGCCATGGCGCTTACCATAGCTGCCTCAATATTGGGTCAGACAATTGGTTCG 215
consensus_12936#1      CC---TTTTTCCGCAGAGCTTCCAGTGACC-CCTTGTGCTTGGAAGACAACTCCGT-CCA 215
consensus_12936#4      CC---TTTTTCCGCAGAGCTTCCAGTGACC-CCTTGTGCTTGGAAGACAACTCCGNTCCA 188
consensus_12936#3      CC---TCTCCTTAGTAGGATTAGGATCATTACG--AATTTAGGATCGAGAATATAGGATT 159
                       **               * **    *     *       * **                 

consensus_12936#0      A----GAGCTGAGCG-TATCAGATTGAAGAGGGCAGCAAAGGTTGCTG-CTGGTAGC-CA 1071
consensus_12936#2      A----GAGCTGAGCG-TATCAGATTGAAGAGGGCAGCAAAGGTTGCTG-CTGGTAGC-CA 268
consensus_12936#1      ACATGGAATTGAAAGATGCCCATTCCTAAGGAACATCAATGAGCCTA--CAAGTTTTTCA 273
consensus_12936#4      ACATGGAATTGAAAGATGCCCATTCCTAAGGAACATCAATGAGCCTNA-CAAGTTTTTCA 247
consensus_12936#3      AT---GAACCAGTAG-TATTAGGATTATGTTTTCTTCGATTCTTTTTCTCCTTCAAATCA 215
                       *    **       * *                *  * *          *        **

consensus_12936#0      GGGTGATGCTAGCACCAGAATGAGCCTGAAAACCGGGAGATACACTGATGATGTCCAGTT 1131
consensus_12936#2      GGGTGATGCTAGCACCAGAATGAGCCTGAAAACCGGGAGATACACTGATGATGTCCAGTT 328
consensus_12936#1      TTCTCGTCCGTTAATTTTCCTGTTCCTGCAAG--AGGAGACAAGGGTCCAATTTTTGAAG 331
consensus_12936#4      TTCTCGTCCGTTAATTTTCCTGTTCCTGCAAG--AGGAGACAAGGTCCNAATTTTTGAAG 305
consensus_12936#3      ATTCCCAATTCGATTTAGGGTTGACGGATACGCGAGCAGGGATAGCCCTCCCGCCCGCAG 275
                                           *   *    *     * **  *                  

consensus_12936#0      CTGGGATCCG----CTTGCCCTCAGAGTTGAGAGTACCATAGGAACAGGAACTCCGGTTC 1187
consensus_12936#2      CTGGGATCCG----CTTGCCCTCAGAGTTGAGAGTACCATAGGAACAGGAACTCCGGTTC 384
consensus_12936#1      ATGGACCCAA---TTTTGACATGGCA-TTTCGAGTTTTCCATGGCCAAGA----TGGGG- 382
consensus_12936#4      ATGGACCCNAA--TTTTGACATGGCAATTTCGAGTTTTCCATGGCCAAGA----TGG--- 356
consensus_12936#3      AAAGATTGGGCTTTCTTGGTTTCCCTGTCGTAA-TCCCTTCTCTCCAGCCAACGCGGTGA 334
                          *           ***   *     *    * *          **        **   

consensus_12936#0      TTGTTCCAACTTTCCATTGATGAT----GTGCCTTGGGTTTGTTTCTTCGGTCGATTATT 1243
consensus_12936#2      TTGTTCCAACTTTCCATTGATGAT----GTGCCTTGGGTTTGTTTCTTCGGTCGATTATT 440
consensus_12936#1      TTGTTCCACTTTCACATGGATCATTTGAGCGATTTGAGAAGCCAA-TGCCAAAGCCCAAT 441
consensus_12936#4      TTGTTCCACTTTCACATGGATCATTTGAGCGATTTGAGAAGCCNAATGCCNAAAGCC--- 413
consensus_12936#3      AAATTTTGTTTCGGTGGGGGTGGGGTGGGTGGTTGCCGGGTAGGTGCTGGTGCATCTGCT 394
                          **     *       * *       * *  *   *                      

consensus_12936#0      GTTGTATTCATTGT-GTTGTGCCTTAGTCTTTATACTAAATATTACGTTGGAT---GCTT 1299
consensus_12936#2      GTTGTATTCATTGT-GTTGTGCCTTAGTCTTTATACTAAATATTACGTTGGAT---GCTT 496
consensus_12936#1      CCTGAATTTAACCC-CTTGGCTGCTAAAGCAGCTACCATCAGTCTCTCTGCATTTGGAGG 500
consensus_12936#4      ------------------------------------------------------------
consensus_12936#3      TTCAGTTTCACCACCACCATGGATTGGCCGCTAAAC-ATATACTGATATACACCTGTTTC 453
                                                                                   

consensus_12936#0      CTCCCATGAATCTGGGGTCCAAATTTCAGTGTACAATAAATTGCACGTGTACATTTCCGA 1359
consensus_12936#2      CTCCCATGAATCTGGGGTCCAAA-----AAAAAAAAAAAAAAACACTGTCATGCCGTTAG 551
consensus_12936#1      TTTTTTCAGCTTTGGTGATTTCTCAAATAAGCGCAATAAGAAGAATAGTAACCAAAAGAA 560
consensus_12936#4      ------------------------------------------------------------
consensus_12936#3      CTGTCCCCTACCCCTAGGCTAGACTACTA------------------------------- 482
                                                                                   

consensus_12936#0      AAAAAAAAAAGCTTAAGCTTTTTTTTTTTCACAACAAGCACACAACCACCTTTTACTGCC 1419
consensus_12936#2      GTAGCGTATCGTTGACAG------------------------------------------ 569
consensus_12936#1      GCCCAACAACCTTCCCCAGAACGGAGGTCAGCCTAATAACCATGAAGCACTGAGCAATGA 620
consensus_12936#4      ------------------------------------------------------------
consensus_12936#3      ------------------------------------------------------------
                                                                                   

consensus_12936#0      TGCA------------------------------------- 1423
consensus_12936#2      -----------------------------------------
consensus_12936#1      GTGGCTGGAAATGGGTCAATGCCCCCTGGCAAAGTCGTACA 661
consensus_12936#4      -----------------------------------------
consensus_12936#3      -----------------------------------------