cluster # 12950

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Oryza sativa
cluster # 12950 cluster # 12950 Sequences # 11 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12950#0 length = 2393 sequences # 8

consensus_12950#1 length = 623 sequences # 2
consensus_12950#2 length = 439 sequences # 1

consensusID : consensus_12950#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 2393
fasta sequence

                              [TGGGAGTGCCAAAGCGGAGGAGAAAGGCTCGTACTTTGAAGGGGAGGGAGGAGCGCAATGCAGCGCGGATCTCTCGGCGTGCTGCGGCTGCGGCTGTGGCTGTGGCTGCTCGCGGTCTCCGCATCAACCGCTGTTCTTGCGGCGGATCCTAGCAAAGAGCCATTCACCATCCGCATAAGCTGTGGGAGTTTTGATGATATCCGGACAGCTCCTACCAACACATTGTGGTACAGAGACTTTGGTTATACTGGTGGCAGATTTGCAAATGCTACACGGCCGAGCTTCATAATTCCTCCGC-TGAAAACGCT-CCGGCATTT-CCCTCTGTC-TGATGGTCCTGAAAATTGCTAC-TACATCAACAATGTTCCCAATGGGCACTATCAAGTTAGGCTTTTCTTTGCTCTTGTGGCTGATCCTAATCTTGACAGCGAGCCGATTTTCGATGTTTCCGTCGAGGGTACTCTATTTAGTTCTTTGCTGTTGGGTTGGAGCAGTGAGGATGAGAAGACATTTGCAGAAGCTTTGGTTTTTGTCCAGGACTCAAGCCTGTCAATTTGCTTCCACAGCACTGGTCATGGTGATCCATCGATACTTTCTATCGAAGTTCTCCAAATAGATGACAATGCCTATAAATTTGGTCCTTCATGGGGGAAAGGTACAATACTTAGAACTGCCAAAAGGTTGACATGTGGTTCTGGCAAACCAGCATTCGACGAAGATCTAAATGGTATTCACTGGGGTGGGGACAGATTCTGGTTAGGGGTGAAAACTTTGTCTTCCAGTTCTGACGACCAGCCGATATCAACTGAGAACGTTATAGCAGAAACATTACTTGCACCAAATTTTTATCCTCAAAGCATCTACCAGTCTGCTATTGTGGGTACTGACAGGCAACCAAGCCTATCCTTTGAAATGGATGTTACTCCAAACAGGAATTATTCTGTGTGGCTTCACTTTGCAGAGATTGAGAATGGAATAACTGCGGAAGAGGAAAGGGTGTTTGATGTACTTATCAATGGGGATACTGCATTCAAGGATATTGATATAATTCGCATGGCAGGAGAACGTTTTACTGCCCTTGTTCTGAATAAAACTATTGTTGTCACTGGGACAACACTAACAATTGTCTTGCAGCCTCTTAAAGGAACACGTGCCACTATTAGTGCTATTGAGGTCTTTGAGATCATTCTGGCCGAAAAGAAAACTTTAACTCAAGAAGTGAGCGCATTGCGTACTGTGAAGGGTTCGCTTGGTCTTCCTCTTCGATTGGGCTGGAACGGTGACCCCTGTGTTCCTCAACAACATCCATGGAGTGGAGTTGAATGCCAGTTTGATGATATCAAAGGCCATTGGGTCATTGATGGGCTAGGTCTTGACAACCAAGGTTTGAGAGGATTTATACCTTCTGACATATCTAAGCTACAACATCTACAAAGCATAAACTTGAGTGGTAATAGCATAAAGGGCAACATTCCTGTCACCTTGGGTACTATATCAGGGCTGCAAGTGCTAGATCTGTCGTACAACGAACTTAATGGTTCTATTCCAGATAGCCTTGGTCAGCTGGCATCGTTACAGATACT-GAATCT-GAATGGCAATTATC--TTTCTGGAAGGGTA-CCAGCCAGCCTTGGAGGAAGACCTCTACACAGAGCTAGATTTAACTTCACGGACAATGCTGGACTTTGTGG-AATTCCCGGTTTACATGAATGCGGCCCGCATTTATCTGTGGCTGCAAAGATTGGTATGGCTTTTGGGGTACTGGTAGCTATCCTATTTCTAGTTGTATTTGCGGCATGCTGGTGGAAGAGAAGACAGAACATTCGCCGTGCGCAGAAATTAGC-TGCAGCAAGGGAAGCTCCTTATGCAAAGTCTCGAACACAATTTACACGGGACATGCAAATGGCGAAGCATCACCGCCCACATGAAAGCTCTCGGAGCGGCAACGATGAAAGCACTCCACATTTGCTTCCTTCCTAGTTAATTGTTAGCTATGGTGATTTGTTGTTTGCTCAGTTGATTCTGCTATCAGGTTGAGTTGCAAAACAAATTGTACATACTAGGTCATGTATGGTGTATAGACACTCGTTTTTGGCTCCAACGTTTATGGTACAGGAGCATTATCAGTTGAGAGAAAGGAATGATCCAGATCAGGTTGTCCTATTGCTTCTGAATTCTGATGGACCAGGTGGTGTACTGACTGAATTGCAACATCTTATGCTTGTGCAAATTAGCAGCCAGATTATCTCCTGTACTACTTTTAAGTTTGCCAAATGTAAATTCAGGGGAGCACCTATTTACTGTTATATAAACCTGAAATCTCACCTGGTCTGTCAATCTGTAAATGTTGTTTTTTTTTAGTTTCAATTGACAGTAATTTATTTCGAGTGGCATAAAAA]

[+] EMBL AU166609             [TGGGAGTGCCAAAGCGGAGGAGAAAGGCTCGTACTTTGAAGGGGAGGGAGGAGCGCAATGCAGCGCGGATCTCTCGGCGTGCTGCGGCTGCGGCTGTGGCTGTGGCTGCTCGCGGTCTCCGCATCAACCGCTGTTCTTGCGGCGGATCCTAGCAAAGAGCCATTCACCATCCGCATAAGCTGTGGGAGTTTTGATGATATCCGGACAGCTCCTACCAACACATTGTGGTACAGAGACTTTGGTTATACTGGTGGCAGATTTGCAAATGCTACACGGCCGAGCTTCATAATTCCTCCGC TGAAAACGCT CCGGCATTT CCCTCTGTC TGATGGTCCTGAAAATTGCTAC TACATCAACAATGTTCCCAATGGGCACTATCAAGTTAGGCTTTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AK102299             [ GGGAGTGCCAAAGCGGAGGAGAAAGGCTCGTACTTTGAAGGGGAGGGAGGAGCGCAATGCAGCGCGGATCTCTCGGCGTGCTGCGGCTGCGGCTGTGGCTGTGGCTGCTCGCGGTCTCCGCATCAACCGCTGTTCTTGCGGCGGATCCTAGCAAAGAGCCATTCACCATCCGCATAAGCTGTGGGAGTTTTGATGATATCCGGACAGCTCCTACCAACACATTGTGGTACAGAGACTTTGGTTATACTGGTGGCAGATTTGCAAATGCTACACGGCCGAGCTTCATAATTCCTCCGC TGAAAACGCT CCGGCATTT CCCTCTGTC TGATGGTCCTGAAAATTGCTAC TACATCAACAATGTTCCCAATGGGCACTATCAAGTTAGGCTTTTCTTTGCTCTTGTGGCTGATCCTAATCTTGACAGCGAGCCGATTTTCGATGTTTCCGTCGAGGGTACTCTATTTAGTTCTTTGCTGTTGGGTTGGAGCAGTGAGGATGAGAAGACATTTGCAGAAGCTTTGGTTTTTGTCCAGGACTCAAGCCTGTCAATTTGCTTCCACAGCACTGGTCATGGTGATCCATCGATACTTTCTATCGAAGTTCTCCAAATAGATGACAATGCCTATAAATTTGGTCCTTCATGGGGGAAAGGTACAATACTTAGAACTGCCAAAAGGTTGACATGTGGTTCTGGCAAACCAGCATTCGACGAAGATCTAAATGGTATTCACTGGGGTGGGGACAGATTCTGGTTAGGGGTGAAAACTTTGTCTTCCAGTTCTGACGACCAGCCGATATCAACTGAGAACGTTATAGCAGAAACATTACTTGCACCAAATTTTTATCCTCAAAGCATCTACCAGTCTGCTATTGTGGGTACTGACAGGCAACCAAGCCTATCCTTTGAAATGGATGTTACTCCAAACAGGAATTATTCTGTGTGGCTTCACTTTGCAGAGATTGAGAATGGAATAACTGCGGAAGAGGAAAGGGTGTTTGATGTACTTATCAATGGGGATACTGCATTCAAGGATATTGATATAATTCGCATGGCAGGAGAACGTTTTACTGCCCTTGTTCTGAATAAAACTATTGTTGTCACTGGGACAACACTAACAATTGTCTTGCAGCCTCTTAAAGGAACACGTGCCACTATTAGTGCTATTGAGGTCTTTGAGATCATTCTGGCCGAAAAGAAAACTTTAACTCAAGAAGTGAGCGCATTGCGTACTGTGAAGGGTTCGCTTGGTCTTCCTCTTCGATTGGGCTGGAACGGTGACCCCTGTGTTCCTCAACAACATCCATGGAGTGGAGTTGAATGCCAGTTTGATGATATCAAAGGCCATTGGGTCATTGATGGGCTAGGTCTTGACAACCAAGGTTTGAGAGGATTTATACCTTCTGACATATCTAAGCTACAACATCTACAAAGCATAAACTTGAGTGGTAATAGCATAAAGGGCAACATTCCTGTCACCTTGGGTACTATATCAGGGCTGCAAGTGCTAGATCTGTCGTACAACGAACTTAATGGTTCTATTCCAGATAGCCTTGGTCAGCTGGCATCGTTACAGATACT GAATCT GAATGGCAATTATC  TTTCTGGAAGGGTA CCAGCCAGCCTTGGAGGAAGACCTCTACACAGAGCTAGATTTAACTTCACGGACAATGCTGGACTTTGTGG AATTCCCGGTTTACATGAATGCGGCCCGCATTTATCTGTGGCTGCAAAGATTGGTATGGCTTTTGGGGTACTGGTAGCTATCCTATTTCTAGTTGTATTTGCGGCATGCTGGTGGAAGAGAAGACAGAACATTCGCCGTGCGCAGAAATTAGC TGCAGCAAGGGAAGCTCCTTATGCAAAGTCTCGAACACAATTTACACGGGACATGCAAATGGCGAAGCATCACCGCCCACATGAAAGCTCTCGGAGCGGCAACGATGAAAGCACTCCACATTTGCTTCCTTCCTAGTTAATTGTTAGCTATGGTGATTTGTTGTTTGCTCAGTTGATTCTGCTATCAGGTTGAGTTGCAAAACAAATTGTACATACTAGGTCATGTATGGTGTATAGACACTCGTTTTTGGCTCCAACGTTTATGGTACAGGAGCATTATCAGTTGAGAGAAAGGAATGATCCAGATCAGGTTGTCCTATTGCTTCTGAATTCTGATGGACCAGGTGGTGTACTGACTGAATTGCAACATCTTATGCTTGTGCAAATTAGCAGCCAGATTATCTCCTGTACTACTTTTAAGTTTGCCAAATGTAAATTCAGGGGAGCACCTATTTACTGTTATATAAACCTGAAATCTCACCTGGTCTGTCAATCTGTAAATGTTGTTTTTTTTTAGTTTCAATTGACAGTAATTTATT                ]
[+] EMBL AU095991             [ GGGAGTNCCAAAGCGGAGGAGAAAGGCTCGTACTTTGAAGGGGAGGGAGGAGCGCAATGCAGCGCGGATCTCTCGGCGTGCTGCGGCTGCGGCTGTGGCTGTGGCTGCTCGCGGTCTCCGCATCAACCGCTGTTCTTGCGGCGGATCCTAGCAAAGAGCCATTCACCATCCGCATAAGCTGTGGGAGTTTTGATGATATCCGGACAGCTCCTACCAACACATTGTGGTACAGAGACTTTGGTTATACTGGTGGCAGATTTGCAAATGCTACACGGCCGAGCTTCATAATTCCTCCGC TGAAAACGCT CCGGCATTT CCCTCTGTC TGATGGTCCTGAAAATTGCTAC TACATCAACAATGTTCCCAATGGGCACTATCAAGTTAGGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL OSS11808A            [ GGGAGTGCCAAAGCGGAGGAGAAAGGCTCGTACTTTGAAGGGGAGGGAGGAGCGCAATGCAGCGCGGATCTCTCGGCGTGCTGCGGCTGCGGCTGTGGCTGTGGCTGCTCGCGGTCTCCGCATCAACCGCTGTTCTTGCGGCGGATCCTAGCAAAGAGCCATTCACCATCCGCATAAGCTGTGGGAGTTTTGATGATATCCGGACAGCTCCTACCAACACATTGTGGTACAGAGACTTTGGTTATACTGGTGGCAGATTTGCAAATGCTACACGGCCGAGCTTCATAATTCCTCCGCTTGAAAACGGTCCCGGCATTTCCCCTCTGTCTTGATGGTCCTGAAAATTGCTACTTACATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AU091806             [ GGGAGTGCCAAAGCGGAGGAGAAAGGCTCGTACTTTGAAGGGGAGGGAGGAGCGCAATGCAGCGCGGATCTCTCGGCGTGCTGCGGCTGCGGCTGTGGCTGTGGCTGCTCGCGGTCTCCGCATCAACCGCTGTTCTTGCGGCGGATCCTAGCAAAGAGCCATTCACCATCCGCATAAGCTGTGGGAGTTTTGATGATATCCGGACAGCTCCTACCAACACATTGTGGTACAGAGACTTTGGTTATACTGGTGGCAGATTTNCAAATGCTACACGGCCGAGCTTCATAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AU063116             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GGTTCTATTCCAGATAGCCTTGGTCAGCTGGCATCGTTACAGATACT GAATCT GAATGGCAATTATC  TTTCTGGAAGGGTA CCAGCCAGCCTTGGAGGAAGACCTCTACACAGAGCTAGATTTAACTTCACGGACAATGCTGGACTTTGTGG AATTCCCGGTTTACATGAATGCGGCCCGCATTTATCTGTGGCTGCAAAGATTGGTATGGCTTTTGGGGTACTGGTAGCTATCCTATTTCTAGTTGTATTTGCGGCATGCTGGTGGAAGAGAAGACAGAACATTCGCCGTG GCAGAAATTAGCTTGCAGCAAGGGAAGCTCCTTATGCAAAGTCTCGAACACAATTTACACGGGACATGCAAATGGCG AGGATCACCGNCCACATGAAAGCTCTC GAGCGGCAACGATGGAAG ACTCCA                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AU162840             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TACAGATACTGGAATCTGGAATGGCAATTATCCTTTTCTGGAAAGGTACCCAGCCAGCTTTGGAGGAAG CCTCTACACAGAGCTAGATTTAACTTCACGGACAATGCTGGACTTTGTGGAAATTCCCGGTTTACATGAATGCGGCCCGCATTTATCTGTGGCTGCAAAGATTGGTATGGCTTTTGGGGTACTGGTAGCTATCCTATTTCTAGTTGTATTTGCGGCATGCTGGTGGAAGAGAAGACAGAACATTCGCCGTGCGCAGAAATTAGC TGCAGCAAGGGAAGCTCCTTATGCAAAGTCTCGAACACAATTTACACGGGACATGCAAATGGCGAAGCATCACCGCCCACATGAAAGCTCTCGGAGCGGCAACGATGAAAGCACTCCACATTTGCTTCCTTCCTAGTTAATTGTTAGCTATGGTGATTTGTTGTTTGCTCAGTTGATTCTGCTATCAGGTTGAGTTGCAAAACAAATTGTACATACTAGGTCATGTATGGTGTATAGACACTCGTTTTTGGCTCCAACGTTTATGGTACAGGAGCATTATCAGTTGAGAGAAAGGAATGATCCAGATCAGGTTGTCCTATTGCTTCTGAATTCTGATGGACCAGGTGGTGTACTGACTGAATTGCAACATCTTATGCTTGTGCAAATTAGCAGCCAGATTATCTCCTGTACTACTTTTAAGTTTGCCAAATGTAAATTCAGGGGAGCACCTATTTACTGTTATATAAACCTGAAATCTCACCTGGTCTGTCAATCTGTAAATGTTGTTTTTTTTTAGTTTCAATTGACAGTAATTTATTTCGAGTGGCATAAAAA]
[+] EMBL AU095990             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TGAATGCGNCCCGCATTTATCTGTGGCTGCAAAGATTGGTATGGCTTTTGGGGTACTGGTAGCTATCCTATTTCTAGTTGTATTTGCGGCATGCTGGTGGAAGAGAAGACAGAACATTCGCCGTGCGCAGAAATTAGC TGCAGCAAGGGAAGCTCCTTATGCAAAGTCTCGAACACAATTTACACGGGACATGCAAATGGCGAAGCATCACCGCCCACATGAAAGCTCTCGGAGCGGCAACGATGAAAGCACTCCACATTTGCTTCCTTCCTAGTTAATTGTTAGCTATGGTGATTTGTTGTTTGCTCAGTTGATTCTGCTATCAGGTTGAGTTGCAAAACAAATTGTACATACTAGGTCATGTATGGTGTATAGACACTCGTTTTTGGCTCCAACGTTTATGGTACAGGAGCATTATCAGTTGAGAGAAAGGAATGATCCAGATCAGGTTGTCCTATTGCTTCTGAATTCTGATGGACCAGGTGGTGTACTGACTGAATTGCAACATCTTATGCTTGTGCAAATTAGCAGCCAGATTATCTCCTGTACTACTTTTAAGTTTGCCAAATGTAAATTCAGGGGAGCACCTATTTACTGTTATATAAACCTGAAATCTCACCTGGTCTGTCAATCTGTAAATGTTGTTTTTTTTTAGTTTCAATTGACAGTAATTTATTTCGAGTGGCATAAAAA]




>consensus_12950#0
TGGGAGTGCCAAAGCGGAGGAGAAAGGCTCGTACTTTGAAGGGGAGGGAGGAGCGCAATG
CAGCGCGGATCTCTCGGCGTGCTGCGGCTGCGGCTGTGGCTGTGGCTGCTCGCGGTCTCC
GCATCAACCGCTGTTCTTGCGGCGGATCCTAGCAAAGAGCCATTCACCATCCGCATAAGC
TGTGGGAGTTTTGATGATATCCGGACAGCTCCTACCAACACATTGTGGTACAGAGACTTT
GGTTATACTGGTGGCAGATTTGCAAATGCTACACGGCCGAGCTTCATAATTCCTCCGCTG
AAAACGCTCCGGCATTTCCCTCTGTCTGATGGTCCTGAAAATTGCTACTACATCAACAAT
GTTCCCAATGGGCACTATCAAGTTAGGCTTTTCTTTGCTCTTGTGGCTGATCCTAATCTT
GACAGCGAGCCGATTTTCGATGTTTCCGTCGAGGGTACTCTATTTAGTTCTTTGCTGTTG
GGTTGGAGCAGTGAGGATGAGAAGACATTTGCAGAAGCTTTGGTTTTTGTCCAGGACTCA
AGCCTGTCAATTTGCTTCCACAGCACTGGTCATGGTGATCCATCGATACTTTCTATCGAA
GTTCTCCAAATAGATGACAATGCCTATAAATTTGGTCCTTCATGGGGGAAAGGTACAATA
CTTAGAACTGCCAAAAGGTTGACATGTGGTTCTGGCAAACCAGCATTCGACGAAGATCTA
AATGGTATTCACTGGGGTGGGGACAGATTCTGGTTAGGGGTGAAAACTTTGTCTTCCAGT
TCTGACGACCAGCCGATATCAACTGAGAACGTTATAGCAGAAACATTACTTGCACCAAAT
TTTTATCCTCAAAGCATCTACCAGTCTGCTATTGTGGGTACTGACAGGCAACCAAGCCTA
TCCTTTGAAATGGATGTTACTCCAAACAGGAATTATTCTGTGTGGCTTCACTTTGCAGAG
ATTGAGAATGGAATAACTGCGGAAGAGGAAAGGGTGTTTGATGTACTTATCAATGGGGAT
ACTGCATTCAAGGATATTGATATAATTCGCATGGCAGGAGAACGTTTTACTGCCCTTGTT
CTGAATAAAACTATTGTTGTCACTGGGACAACACTAACAATTGTCTTGCAGCCTCTTAAA
GGAACACGTGCCACTATTAGTGCTATTGAGGTCTTTGAGATCATTCTGGCCGAAAAGAAA
ACTTTAACTCAAGAAGTGAGCGCATTGCGTACTGTGAAGGGTTCGCTTGGTCTTCCTCTT
CGATTGGGCTGGAACGGTGACCCCTGTGTTCCTCAACAACATCCATGGAGTGGAGTTGAA
TGCCAGTTTGATGATATCAAAGGCCATTGGGTCATTGATGGGCTAGGTCTTGACAACCAA
GGTTTGAGAGGATTTATACCTTCTGACATATCTAAGCTACAACATCTACAAAGCATAAAC
TTGAGTGGTAATAGCATAAAGGGCAACATTCCTGTCACCTTGGGTACTATATCAGGGCTG
CAAGTGCTAGATCTGTCGTACAACGAACTTAATGGTTCTATTCCAGATAGCCTTGGTCAG
CTGGCATCGTTACAGATACTGAATCTGAATGGCAATTATCTTTCTGGAAGGGTACCAGCC
AGCCTTGGAGGAAGACCTCTACACAGAGCTAGATTTAACTTCACGGACAATGCTGGACTT
TGTGGAATTCCCGGTTTACATGAATGCGGCCCGCATTTATCTGTGGCTGCAAAGATTGGT
ATGGCTTTTGGGGTACTGGTAGCTATCCTATTTCTAGTTGTATTTGCGGCATGCTGGTGG
AAGAGAAGACAGAACATTCGCCGTGCGCAGAAATTAGCTGCAGCAAGGGAAGCTCCTTAT
GCAAAGTCTCGAACACAATTTACACGGGACATGCAAATGGCGAAGCATCACCGCCCACAT
GAAAGCTCTCGGAGCGGCAACGATGAAAGCACTCCACATTTGCTTCCTTCCTAGTTAATT
GTTAGCTATGGTGATTTGTTGTTTGCTCAGTTGATTCTGCTATCAGGTTGAGTTGCAAAA
CAAATTGTACATACTAGGTCATGTATGGTGTATAGACACTCGTTTTTGGCTCCAACGTTT
ATGGTACAGGAGCATTATCAGTTGAGAGAAAGGAATGATCCAGATCAGGTTGTCCTATTG
CTTCTGAATTCTGATGGACCAGGTGGTGTACTGACTGAATTGCAACATCTTATGCTTGTG
CAAATTAGCAGCCAGATTATCTCCTGTACTACTTTTAAGTTTGCCAAATGTAAATTCAGG
GGAGCACCTATTTACTGTTATATAAACCTGAAATCTCACCTGGTCTGTCAATCTGTAAAT
GTTGTTTTTTTTTAGTTTCAATTGACAGTAATTTATTTCGAGTGGCATAAAAA

consensusID : consensus_12950#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 623
fasta sequence

                              [TGGTTCTATTCCAGATAGCCTTGGTCAGCTGGCATCGTTACAGATACTGAATCTGAATGGCAATTATCTTTCTGGAAGGGTNCCAGCCAGCCTTGGAGGAAGACCTCTACACAGAGCTAGATTTAACTTCACGGACAATGCTGGACTTTGTGGAATTCCCGGTTTACATGAATGCGGCCCGCATTTATCTGTGGCTGCAAAGATTGGTATGGCTTTTGGGGTACTGGTAGCTATCCTATTTCTAGTTGTATTTGCGGCATGCTGGTGGAAGAGAAGACAGAACATTCGCCGTGCGCAGAAATTAGCTGCAGCAAGGGAAGCTCCTTATGCAAAGTCTCGAACACAATTTACACGGGACATGCAAATGGCGAAGCATCACCGCCCACATGAAAGCTCTCGGAGCGGCAACGATGAAAGCACTCCACATTTGCTTCCTTCCTAGTTAATTGTTAGCTATGGTGATTTGTTGTTTGCTCAGTTGATTCTGCTATCAGGTTGAGTTGCAAAACAAATTGTACATACTAGGTCATGTATGGTGTATAGACACTCGTTTTTGGCTCCAACGTTTATGGTACAGGAGCATTATCAGTTGAGAGAAAGGAATGATCCAAAAAAAAAAAAAA]

[+] EMBL AU092720             [TGGTTCTATTCCAGATAGCCTTGGTCAGCTGGCATCGTTACAGATACTGAATCTGAATGGCAATTATCTTTCTGGAAGGGTNCCAGCCAGCCTTGGAGGAAGACCTCTACACAGAGCTAGATTTAACTTCACGGACAATGCTGGACTTTGTGGAATTCCCGGTTTACATGAATGCGGCCCGCATTTATCTGTGGCTGCAAAGATTGGTATGGCTTTTGGGGTACTGGTAGCTATCCTATTTCTAGTTGTATTTGCGGCATGCTGGTGGAAGAGAAGACAGAACATTCGCCGTGCGCAGAAATTAGCTGCAGCAAGGGAAGCTCCTTATGCAAAGTCTCGAACACAATTTACACGGGACATGCAAATGGCGAAGCATCACCGCCCACATGAAAGCTCTCGGAGCGGCAACGATGAAAGCACTCCACATTTGCTTCCTTCCTAGTTAATTGTTAGCTATGGTGATTTGTTGTTTGCTCAGTTGATTCTGCTATCAGGTTGAGTTGCAAAACAAATTGTACATACTAGGTCATGTATGGTGTATAGACACTCGTTTTTGGCTCCAACGTTTATGGTACAGGAGCATTATCAGTTGAGAGAAAGGAATGATCCAAAAAAAAAAAAAA]
[+] EMBL AU166608             [                                                                                                                                                                     ACATGAATGCGGCCCGCATTTATCTGTGGCTGCAAAGATTGGTATGGCTTTTGGGGTACTGGTAGCTATCCTATTTCTAGTTGTATTTGCGGCATGCTGGTGGAANANAAGACAGAACATTCGCCGTGCGCANAAATTAGCTGCAGCAAGGGAAGCTCCTTATGCAAAGTCTCGAACACAATTTACACGGGACATGCAAATGGCGAAGCATCACCGCCCACATGAAAGCTCTCGGANCGGCAACGATGAAAGCACTCCACATTTGCTTCCTTCCTAGTTAATTGTTAGCTATGGTGATTTGTTGTTTGCTCAGTTGATTCTGCTATCAGGTTGAGTTGCAAAACAAATTGTACATACTAGGTCATGTATGGTGTATAGACACTCGTTTTTGGCTCCAACGTTTATGGTACAGGAGCATTATCAGTTGAGAGAAA  AA  A   AAAAAAAA      ]




>consensus_12950#1
TGGTTCTATTCCAGATAGCCTTGGTCAGCTGGCATCGTTACAGATACTGAATCTGAATGG
CAATTATCTTTCTGGAAGGGTNCCAGCCAGCCTTGGAGGAAGACCTCTACACAGAGCTAG
ATTTAACTTCACGGACAATGCTGGACTTTGTGGAATTCCCGGTTTACATGAATGCGGCCC
GCATTTATCTGTGGCTGCAAAGATTGGTATGGCTTTTGGGGTACTGGTAGCTATCCTATT
TCTAGTTGTATTTGCGGCATGCTGGTGGAAGAGAAGACAGAACATTCGCCGTGCGCAGAA
ATTAGCTGCAGCAAGGGAAGCTCCTTATGCAAAGTCTCGAACACAATTTACACGGGACAT
GCAAATGGCGAAGCATCACCGCCCACATGAAAGCTCTCGGAGCGGCAACGATGAAAGCAC
TCCACATTTGCTTCCTTCCTAGTTAATTGTTAGCTATGGTGATTTGTTGTTTGCTCAGTT
GATTCTGCTATCAGGTTGAGTTGCAAAACAAATTGTACATACTAGGTCATGTATGGTGTA
TAGACACTCGTTTTTGGCTCCAACGTTTATGGTACAGGAGCATTATCAGTTGAGAGAAAG
GAATGATCCAAAAAAAAAAAAAA

consensusID : consensus_12950#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 439
fasta sequence

                              [CAAATGGCGAAGCATCACCGCCCACATGAAAGCTCTCGGAGCGGCAACGNTGAAAGCACTCCACATTTGCTTCCTTCCTAGTTAATTGTTAGCTATGGTGATTTGTTGTTTGCTCAGTTGATTCTGCTATCAGGTTGAGTTGCAAAACAAATTGTACATACTAGGTCATGTATGGTGTATAGACACTCGTTTTTGGCTCCAACGTTTATGGTACAGGAGCATTATCAGTTGAGAGAAAGGAATGATCCAGATCAGGTTGTCCTATTGCTTCTGAATTCTGATGGACCAGGTGGTGTACTGACTGAATTGCAACATCTTATGCTTGTGCAAATTAGCAGCCAGATTATCTCCTGTACTACTTTTAAGTTTGCCAAATGTAAATTCAGGGGAGCACCTATTTACTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL C97654               [CAAATGGCGAAGCATCACCGCCCACATGAAAGCTCTCGGAGCGGCAACGNTGAAAGCACTCCACATTTGCTTCCTTCCTAGTTAATTGTTAGCTATGGTGATTTGTTGTTTGCTCAGTTGATTCTGCTATCAGGTTGAGTTGCAAAACAAATTGTACATACTAGGTCATGTATGGTGTATAGACACTCGTTTTTGGCTCCAACGTTTATGGTACAGGAGCATTATCAGTTGAGAGAAAGGAATGATCCAGATCAGGTTGTCCTATTGCTTCTGAATTCTGATGGACCAGGTGGTGTACTGACTGAATTGCAACATCTTATGCTTGTGCAAATTAGCAGCCAGATTATCTCCTGTACTACTTTTAAGTTTGCCAAATGTAAATTCAGGGGAGCACCTATTTACTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_12950#2
CAAATGGCGAAGCATCACCGCCCACATGAAAGCTCTCGGAGCGGCAACGNTGAAAGCACT
CCACATTTGCTTCCTTCCTAGTTAATTGTTAGCTATGGTGATTTGTTGTTTGCTCAGTTG
ATTCTGCTATCAGGTTGAGTTGCAAAACAAATTGTACATACTAGGTCATGTATGGTGTAT
AGACACTCGTTTTTGGCTCCAACGTTTATGGTACAGGAGCATTATCAGTTGAGAGAAAGG
AATGATCCAGATCAGGTTGTCCTATTGCTTCTGAATTCTGATGGACCAGGTGGTGTACTG
ACTGAATTGCAACATCTTATGCTTGTGCAAATTAGCAGCCAGATTATCTCCTGTACTACT
TTTAAGTTTGCCAAATGTAAATTCAGGGGAGCACCTATTTACTGTTAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12950#0      TGGGAGTGCCAAAGCGGAGGAGAAAGGCTCGTACTTTGAAGGGGAGGGAGGAGCGCAATG 60
consensus_12950#1      ------------------------------------------------------------
consensus_12950#2      ------------------------------------------------------------
                                                                                   

consensus_12950#0      CAGCGCGGATCTCTCGGCGTGCTGCGGCTGCGGCTGTGGCTGTGGCTGCTCGCGGTCTCC 120
consensus_12950#1      ------------------------------------------------------------
consensus_12950#2      ------------------------------------------------------------
                                                                                   

consensus_12950#0      GCATCAACCGCTGTTCTTGCGGCGGATCCTAGCAAAGAGCCATTCACCATCCGCATAAGC 180
consensus_12950#1      ------------------------------------------------------------
consensus_12950#2      ------------------------------------------------------------
                                                                                   

consensus_12950#0      TGTGGGAGTTTTGATGATATCCGGACAGCTCCTACCAACACATTGTGGTACAGAGACTTT 240
consensus_12950#1      ------------------------------------------------------------
consensus_12950#2      ------------------------------------------------------------
                                                                                   

consensus_12950#0      GGTTATACTGGTGGCAGATTTGCAAATGCTACACGGCCGAGCTTCATAATTCCTCCGCTG 300
consensus_12950#1      ------------------------------------------------------------
consensus_12950#2      ------------------------------------------------------------
                                                                                   

consensus_12950#0      AAAACGCTCCGGCATTTCCCTCTGTCTGATGGTCCTGAAAATTGCTACTACATCAACAAT 360
consensus_12950#1      ------------------------------------------------------------
consensus_12950#2      ------------------------------------------------------------
                                                                                   

consensus_12950#0      GTTCCCAATGGGCACTATCAAGTTAGGCTTTTCTTTGCTCTTGTGGCTGATCCTAATCTT 420
consensus_12950#1      ------------------------------------------------------------
consensus_12950#2      ------------------------------------------------------------
                                                                                   

consensus_12950#0      GACAGCGAGCCGATTTTCGATGTTTCCGTCGAGGGTACTCTATTTAGTTCTTTGCTGTTG 480
consensus_12950#1      ------------------------------------------------------------
consensus_12950#2      ------------------------------------------------------------
                                                                                   

consensus_12950#0      GGTTGGAGCAGTGAGGATGAGAAGACATTTGCAGAAGCTTTGGTTTTTGTCCAGGACTCA 540
consensus_12950#1      ------------------------------------------------------------
consensus_12950#2      ------------------------------------------------------------
                                                                                   

consensus_12950#0      AGCCTGTCAATTTGCTTCCACAGCACTGGTCATGGTGATCCATCGATACTTTCTATCGAA 600
consensus_12950#1      ------------------------------------------------------------
consensus_12950#2      ------------------------------------------------------------
                                                                                   

consensus_12950#0      GTTCTCCAAATAGATGACAATGCCTATAAATTTGGTCCTTCATGGGGGAAAGGTACAATA 660
consensus_12950#1      ------------------------------------------------------------
consensus_12950#2      ------------------------------------------------------------
                                                                                   

consensus_12950#0      CTTAGAACTGCCAAAAGGTTGACATGTGGTTCTGGCAAACCAGCATTCGACGAAGATCTA 720
consensus_12950#1      ------------------------------------------------------------
consensus_12950#2      ------------------------------------------------------------
                                                                                   

consensus_12950#0      AATGGTATTCACTGGGGTGGGGACAGATTCTGGTTAGGGGTGAAAACTTTGTCTTCCAGT 780
consensus_12950#1      ------------------------------------------------------------
consensus_12950#2      ------------------------------------------------------------
                                                                                   

consensus_12950#0      TCTGACGACCAGCCGATATCAACTGAGAACGTTATAGCAGAAACATTACTTGCACCAAAT 840
consensus_12950#1      ------------------------------------------------------------
consensus_12950#2      ------------------------------------------------------------
                                                                                   

consensus_12950#0      TTTTATCCTCAAAGCATCTACCAGTCTGCTATTGTGGGTACTGACAGGCAACCAAGCCTA 900
consensus_12950#1      ------------------------------------------------------------
consensus_12950#2      ------------------------------------------------------------
                                                                                   

consensus_12950#0      TCCTTTGAAATGGATGTTACTCCAAACAGGAATTATTCTGTGTGGCTTCACTTTGCAGAG 960
consensus_12950#1      ------------------------------------------------------------
consensus_12950#2      ------------------------------------------------------------
                                                                                   

consensus_12950#0      ATTGAGAATGGAATAACTGCGGAAGAGGAAAGGGTGTTTGATGTACTTATCAATGGGGAT 1020
consensus_12950#1      ------------------------------------------------------------
consensus_12950#2      ------------------------------------------------------------
                                                                                   

consensus_12950#0      ACTGCATTCAAGGATATTGATATAATTCGCATGGCAGGAGAACGTTTTACTGCCCTTGTT 1080
consensus_12950#1      ------------------------------------------------------------
consensus_12950#2      ------------------------------------------------------------
                                                                                   

consensus_12950#0      CTGAATAAAACTATTGTTGTCACTGGGACAACACTAACAATTGTCTTGCAGCCTCTTAAA 1140
consensus_12950#1      ------------------------------------------------------------
consensus_12950#2      ------------------------------------------------------------
                                                                                   

consensus_12950#0      GGAACACGTGCCACTATTAGTGCTATTGAGGTCTTTGAGATCATTCTGGCCGAAAAGAAA 1200
consensus_12950#1      ------------------------------------------------------------
consensus_12950#2      ------------------------------------------------------------
                                                                                   

consensus_12950#0      ACTTTAACTCAAGAAGTGAGCGCATTGCGTACTGTGAAGGGTTCGCTTGGTCTTCCTCTT 1260
consensus_12950#1      ------------------------------------------------------------
consensus_12950#2      ------------------------------------------------------------
                                                                                   

consensus_12950#0      CGATTGGGCTGGAACGGTGACCCCTGTGTTCCTCAACAACATCCATGGAGTGGAGTTGAA 1320
consensus_12950#1      ------------------------------------------------------------
consensus_12950#2      ------------------------------------------------------------
                                                                                   

consensus_12950#0      TGCCAGTTTGATGATATCAAAGGCCATTGGGTCATTGATGGGCTAGGTCTTGACAACCAA 1380
consensus_12950#1      ------------------------------------------------------------
consensus_12950#2      ------------------------------------------------------------
                                                                                   

consensus_12950#0      GGTTTGAGAGGATTTATACCTTCTGACATATCTAAGCTACAACATCTACAAAGCATAAAC 1440
consensus_12950#1      ------------------------------------------------------------
consensus_12950#2      ------------------------------------------------------------
                                                                                   

consensus_12950#0      TTGAGTGGTAATAGCATAAAGGGCAACATTCCTGTCACCTTGGGTACTATATCAGGGCTG 1500
consensus_12950#1      ------------------------------------------------------------
consensus_12950#2      ------------------------------------------------------------
                                                                                   

consensus_12950#0      CAAGTGCTAGATCTGTCGTACAACGAACTTAATGGTTCTATTCCAGATAGCCTTGGTCAG 1560
consensus_12950#1      --------------------------------TGGTTCTATTCCAGATAGCCTTGGTCAG 28
consensus_12950#2      ------------------------------------------------------------
                                                                                   

consensus_12950#0      CTGGCATCGTTACAGATACTGAATCTGAATGGCAATTATCTTTCTGGAAGGGTACCAGCC 1620
consensus_12950#1      CTGGCATCGTTACAGATACTGAATCTGAATGGCAATTATCTTTCTGGAAGGGTNCCAGCC 88
consensus_12950#2      ------------------------------------------------------------
                                                                                   

consensus_12950#0      AGCCTTGGAGGAAGACCTCTACACAGAGCTAGATTTAACTTCACGGACAATGCTGGACTT 1680
consensus_12950#1      AGCCTTGGAGGAAGACCTCTACACAGAGCTAGATTTAACTTCACGGACAATGCTGGACTT 148
consensus_12950#2      ------------------------------------------------------------
                                                                                   

consensus_12950#0      TGTGGAATTCCCGGTTTACATGAATGCGGCCCGCATTTATCTGTGGCTGCAAAGATTGGT 1740
consensus_12950#1      TGTGGAATTCCCGGTTTACATGAATGCGGCCCGCATTTATCTGTGGCTGCAAAGATTGGT 208
consensus_12950#2      ------------------------------------------------------------
                                                                                   

consensus_12950#0      ATGGCTTTTGGGGTACTGGTAGCTATCCTATTTCTAGTTGTATTTGCGGCATGCTGGTGG 1800
consensus_12950#1      ATGGCTTTTGGGGTACTGGTAGCTATCCTATTTCTAGTTGTATTTGCGGCATGCTGGTGG 268
consensus_12950#2      ------------------------------------------------------------
                                                                                   

consensus_12950#0      AAGAGAAGACAGAACATTCGCCGTGCGCAGAAATTAGCTGCAGCAAGGGAAGCTCCTTAT 1860
consensus_12950#1      AAGAGAAGACAGAACATTCGCCGTGCGCAGAAATTAGCTGCAGCAAGGGAAGCTCCTTAT 328
consensus_12950#2      ------------------------------------------------------------
                                                                                   

consensus_12950#0      GCAAAGTCTCGAACACAATTTACACGGGACATGCAAATGGCGAAGCATCACCGCCCACAT 1920
consensus_12950#1      GCAAAGTCTCGAACACAATTTACACGGGACATGCAAATGGCGAAGCATCACCGCCCACAT 388
consensus_12950#2      ---------------------------------CAAATGGCGAAGCATCACCGCCCACAT 27
                                                        ***************************

consensus_12950#0      GAAAGCTCTCGGAGCGGCAACGATGAAAGCACTCCACATTTGCTTCCTTCCTAGTTAATT 1980
consensus_12950#1      GAAAGCTCTCGGAGCGGCAACGATGAAAGCACTCCACATTTGCTTCCTTCCTAGTTAATT 448
consensus_12950#2      GAAAGCTCTCGGAGCGGCAACGNTGAAAGCACTCCACATTTGCTTCCTTCCTAGTTAATT 87
                       ********************** *************************************

consensus_12950#0      GTTAGCTATGGTGATTTGTTGTTTGCTCAGTTGATTCTGCTATCAGGTTGAGTTGCAAAA 2040
consensus_12950#1      GTTAGCTATGGTGATTTGTTGTTTGCTCAGTTGATTCTGCTATCAGGTTGAGTTGCAAAA 508
consensus_12950#2      GTTAGCTATGGTGATTTGTTGTTTGCTCAGTTGATTCTGCTATCAGGTTGAGTTGCAAAA 147
                       ************************************************************

consensus_12950#0      CAAATTGTACATACTAGGTCATGTATGGTGTATAGACACTCGTTTTTGGCTCCAACGTTT 2100
consensus_12950#1      CAAATTGTACATACTAGGTCATGTATGGTGTATAGACACTCGTTTTTGGCTCCAACGTTT 568
consensus_12950#2      CAAATTGTACATACTAGGTCATGTATGGTGTATAGACACTCGTTTTTGGCTCCAACGTTT 207
                       ************************************************************

consensus_12950#0      ATGGTACAGGAGCATTATCAGTTGAGAGAAAGGAATGATCCAGATCAGGTTGTCCTATTG 2160
consensus_12950#1      ATGGTACAGGAGCATTATCAGTTGAGAGAAAGGAATGATCCAAAAAAAAAAAAAA----- 623
consensus_12950#2      ATGGTACAGGAGCATTATCAGTTGAGAGAAAGGAATGATCCAGATCAGGTTGTCCTATTG 267
                       ****************************************** *  *             

consensus_12950#0      CTTCTGAATTCTGATGGACCAGGTGGTGTACTGACTGAATTGCAACATCTTATGCTTGTG 2220
consensus_12950#1      ------------------------------------------------------------
consensus_12950#2      CTTCTGAATTCTGATGGACCAGGTGGTGTACTGACTGAATTGCAACATCTTATGCTTGTG 327
                                                                                   

consensus_12950#0      CAAATTAGCAGCCAGATTATCTCCTGTACTACTTTTAAGTTTGCCAAATGTAAATTCAGG 2280
consensus_12950#1      ------------------------------------------------------------
consensus_12950#2      CAAATTAGCAGCCAGATTATCTCCTGTACTACTTTTAAGTTTGCCAAATGTAAATTCAGG 387
                                                                                   

consensus_12950#0      GGAGCACCTATTTACTGTTATATAAACCTGAAATCTCACCTGGTCTGTCAATCTGTAAAT 2340
consensus_12950#1      ------------------------------------------------------------
consensus_12950#2      GGAGCACCTATTTACTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-------- 439
                                                                                   

consensus_12950#0      GTTGTTTTTTTTTAGTTTCAATTGACAGTAATTTATTTCGAGTGGCATAAAAA 2393
consensus_12950#1      -----------------------------------------------------
consensus_12950#2      -----------------------------------------------------