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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12988#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 2113 fasta sequence
[AGTAAGGAACACAGGCGCCGCGGCCACAACCCACACGCGAACCGGCGAACACGAGCGAGAGTGCGAGAGCGAGACGCATCCTGCCACCACCGGCGACCAAGGCCCGCAGCGAGCCGGTCGCACGGTGGCACCTCGCGTCCTCGGCCCCTCCTCCTCGCCATCCGCCCATCCCTCGTCGGTCGCGGCCTCCCCGAACGAGCTGGCTCCGAGCCGAGCCAGCTCGGTACACTAACGAGCTGGAGCGAGCCGAGCCGAGCCAAGATATCCACCCCTAGTGTGGCCACAAACAACAAGAGAGAGCAGACACCACCACACCATCCAACCAACCAAATTCCTCTCTCCTCCGCCGCGCCCGCGCCGCAGCAAGCAGGAGGGCCTCCGCCCGTGCGATGCCGGCGGCGGCTAGGCTACGGGCGGCCCGGTGATGGCGACCTTCTTCCGCAGCGCCAACCTCGCCTCCAGGGTCTTCGACCGCCAGTTCCTCTCCCCACGCCCCGGCGCTACTGTTAACACTGTTAGACAGTTCTATGAGAACTTGGTTCCGAGTTACACTATATGTGACATAGATTGCCCAGATTATTCATTTCGTAAATTCACTGATGATGGCAACTATCTTGTGGCTTTTAGCCGGAACCACCAAGATTTAATCGTGTACCGTCCCATCTGGCCAACATTTTCATGCAATGAGCCATGCGACTCTCATGATCTTCCACCCAAAGCAAAGAAATTCGACAGCTTCTTTAAGCAGCTCTACTCAATTTCACTTGCATCTAGCAATGAATACATCTGCAAGGACTTTTTCCTTTACATGGAGTGCCATCAGTTTGGCTTATTTGCCACATCAACTGCACAAAGCAACGATTCAAGTGCCACTGAGGGTGCTATTCATGGGGTACCATCAATTGAGAAAATTACTTTCTATCTTGTCAGGCTAGACGATGGCGCAATACTAGATGAGAAAGCTTTCCGCAATGATTTTATCAATCTGGCTCATAGTATTGGAGCTTACTTGTATGAGGACCTGCTATGCATTGTCTCTCTTCGATATCAAACAATTCATGTCCTACAGATACGAGATTCAGGCAACCTTGTTGAAGTACGCAAAATTGGTGCATTTTGCCAGGAAGATGATGAGCTATTTCTCCATTCACATGGTCAGGCTGCACGAGGTGTTTCTTTTCTTCCTGGCATCAAGCAACGGTTGTTGTCATTTATTTTTCGCAAGACATGGAATGAGGAATCTGATCAGACCTTGAGAGTCCAGCATCTGAAGAAGAAGTTCTATTTTCACTTTCAAGACTATGTTGATCTTATCATATGGAAGGTGCAGTTTTTGGATCGTCATCACCTATTTATCAAGTTTGGTAGTGTGGATGGAGGGGTTTCTCGCAGCACTGAACAGAATTCAGCATTCTTTGCTGTGTACAACATGGAGACGACAGATATTGTTTCACTCTATCAGAATTCTTCGGAGGAGCTCTATTCATTGTTTGAATATTTTTATGACCATTTTCACACAAATCCACAAAATTCATCGCATGGAAATTTTATCTCGTCACATTCCAATAATGTTCATGCTCTCGATCAACTTCGGACAATTAAAAATAAAGCAAACAGCACCTCACAGTTTGTGAAAAAGATGATGGCGTCACTACCTTACACTTGTCAATCACAAAGTCCTTCGCCATACTTTGACCTATCATTGTTTCGGTATGATGAGAAGCTGATTTCAGCGATTGATCGGCACAGACACTGTACAGAGCATCCAATAAAATTTATATCAGTGAAACAGCCAAATGTTGTCAAATTCAAGATAAAACCAGGTTCAGATTCTGGTGCTTCTGACAGCAGGGCAAAAAGAATATCTTCCTTCTTGTTTCACCCATTTTTCCCTCTCGCACTTTCTATTCAGCAGACATATATGCAGCCAACTGTTGTCAATTTACATTTCAGGAGATAGAACGATATTGCCGTTCCCTCAATTGTATTTGTAACAGTTGTGAGCGGTGCACAGCTCAGTAAAAATTTTGGCCGCTTGTAGTAGGATGTTTTATCGGCAAAGATCTTATTATAGGCAAAGGAAAAATGTGGGTAAAAAAACTCGAGACTAGTT]
[+] EMBL AK100613 [AGTAAGGAACACAGGCGCCGCGGCCACAACCCACACGCGAACCGGCGAACACGAGCGAGAGTGCGAGAGCGAGACGCATCCTGCCACCACCGGCGACCAAGGCCCGCAGCGAGCCGGTCGCACGGTGGCACCTCGCGTCCTCGGCCCCTCCTCCTCGCCATCCGCCCATCCCTCGTCGGTCGCGGCCTCCCCGAACGAGCTGGCTCCGAGCCGAGCCAGCTCGGTACACTAACGAGCTGGAGCGAGCCGAGCCGAGCCAAGATATCCACCCCTAGTGTGGCCACAAACAACAAGAGAGAGCAGACACCACCACACCATCCAACCAACCAAATTCCTCTCTCCTCCGCCGCGCCCGCGCCGCAGCAAGCAGGAGGGCCTCCGCCCGTGCGATGCCGGCGGCGGCTAGGCTACGGGCGGCCCGGTGATGGCGACCTTCTTCCGCAGCGCCAACCTCGCCTCCAGGGTCTTCGACCGCCAGTTCCTCTCCCCACGCCCCGGCGCTACTGTTAACACTGTTAGACAGTTCTATGAGAACTTGGTTCCGAGTTACACTATATGTGACATAGATTGCCCAGATTATTCATTTCGTAAATTCACTGATGATGGCAACTATCTTGTGGCTTTTAGCCGGAACCACCAAGATTTAATCGTGTACCGTCCCATCTGGCCAACATTTTCATGCAATGAGCCATGCGACTCTCATGATCTTCCACCCAAAGCAAAGAAATTCGACAGCTTCTTTAAGCAGCTCTACTCAATTTCACTTGCATCTAGCAATGAATACATCTGCAAGGACTTTTTCCTTTACATGGAGTGCCATCAGTTTGGCTTATTTGCCACATCAACTGCACAAAGCAACGATTCAAGTGCCACTGAGGGTGCTATTCATGGGGTACCATCAATTGAGAAAATTACTTTCTATCTTGTCAGGCTAGACGATGGCGCAATACTAGATGAGAAAGCTTTCCGCAATGATTTTATCAATCTGGCTCATAGTATTGGAGCTTACTTGTATGAGGACCTGCTATGCATTGTCTCTCTTCGATATCAAACAATTCATGTCCTACAGATACGAGATTCAGGCAACCTTGTTGAAGTACGCAAAATTGGTGCATTTTGCCAGGAAGATGATGAGCTATTTCTCCATTCACATGGTCAGGCTGCACGAGGTGTTTCTTTTCTTCCTGGCATCAAGCAACGGTTGTTGTCATTTATTTTTCGCAAGACATGGAATGAGGAATCTGATCAGACCTTGAGAGTCCAGCATCTGAAGAAGAAGTTCTATTTTCACTTTCAAGACTATGTTGATCTTATCATATGGAAGGTGCAGTTTTTGGATCGTCATCACCTATTTATCAAGTTTGGTAGTGTGGATGGAGGGGTTTCTCGCAGCACTGAACAGAATTCAGCATTCTTTGCTGTGTACAACATGGAGACGACAGATATTGTTTCACTCTATCAGAATTCTTCGGAGGAGCTCTATTCATTGTTTGAATATTTTTATGACCATTTTCACACAAATCCACAAAATTCATCGCATGGAAATTTTATCTCGTCACATTCCAATAATGTTCATGCTCTCGATCAACTTCGGACAATTAAAAATAAAGCAAACAGCACCTCACAGTTTGTGAAAAAGATGATGGCGTCACTACCTTACACTTGTCAATCACAAAGTCCTTCGCCATACTTTGACCTATCATTGTTTCGGTATGATGAGAAGCTGATTTCAGCGATTGATCGGCACAGACACTGTACAGAGCATCCAATAAAATTTATATCAGTGAAACAGCCAAATGTTGTCAAATTCAAGATAAAACCAGGTTCAGATTCTGGTGCTTCTGACAGCAGGGCAAAAAGAATATCTTCCTTCTTGTTTCACCCATTTTTCCCTCTCGCACTTTCTATTCAGCAGACATATATGCAGCCAACTGTTGTCAATTTACATTTCAGGAGATAGAACGATATTGCCGTTCCCTCAATTGTATTTGTAACAGTTGTGAGCGGTGCACAGCTCAGTAAAAATTTTGGCCGCTTGTAGTAGGATGTTTTATCGGCAAAGATCTTATTATAGGCAAAGGAAAAATGTGGGT ]
[+] EMBL AK058683 [ ACACCACCACACCATCCAACCAACCAAATTCCTCTCTCCTCCGCCGCGCCCGCGCCGCAGCAAGCAGGAGGGCCTCCGCCCGTGCGATGCCGGCGGCGGCTAGGCTACGGGCGGCCCGGTGATGGCGACCTTCTTCCGCAGCGCCAACCTCGCCTCCAGGGTCTTCGACCGCCAGTTCCTCTCCCCACGCCCCGGCGCTACTGTTAACACTGTTAGACAGTTCTATGAGAACTTGGTTCCGAGTTACACTATATGTGACATAGATTGCCCAGATTATTCATTTCGTAAATTCACTGATGATGGCAACTATCTTGTGGCTTTTAGCCGGAACCACCAAGATTTAATCGTGTACCGTCCCATCTGGCCAACATTTTCATGCAATGAGCCATGCGACTCTCATGATCTTCCACCCAAAGCAAAGAAATTCGACAGCTTCTTTAAGCAGCTCTACTCAATTTCACTTGCATCTAGCAATGAATACATCTGCAAGGACTTTTTCCTTTACATGGAGTGCCATCAGTTTGGCTTATTTGCCACATCAACTGCACAAAGCAACGATTCAAGTGCCACTGAGGGTGCTATTCATGGGGTACCATCAATTGAGAAAATTACTTTCTATCTTGTCAGGCTAGACGATGGCGCAATACTAGATGAGAAAGCTTTCCGCAATGATTTTATCAATCTGGCTCATAGTATTGGAGCTTACTTGTATGAGGACCTGCTATGCATTGTCTCTCTTCGATATCAAACAATTCATGTCCTACAGATACGAGATTCAGGCAACCTTGTTGAAGTACGCAAAATTGGTGCATTTTGCCAGGAAGATGATGAGCTATTTCTCCATTCACATGGTCAGGCTGCACGAGGTGTTTCTTTTCTTCCTGGCATCAAGCAACGGTTGTTGTCATTTATTTTTCGCAAGACATGGAATGAGGAATCTGATCAGACCTTGAGAGTCCAGCATCTGAAGAAGAAGTTCTATTTTCACTTTCAAGACTATGTTGATCTTATCATATGGAAGGTGCAGTTTTTGGATCGTCATCACCTATTTATCAAGTTTGGTAGTGTGGATGGAGGGGTTTCTCGCAGCACTGAACAGAATTCAGCATTCTTTGCTGTGTACAACATGGAGACGACAGATATTGTTTCACTCTATCAGAATTCTTCGGAGGAGCTCTATTCATTGTTTGAATATTTTTATGACCATTTTCACACAAATCCACAAAATTCATCGCATGGAAATTTTATCTCGTCACATTCCAATAATGTTCATGCTCTCGATCAACTTCGGACAATTAAAAATAAAGCAAACAGCACCTCACAGTTTGTGAAAAAGATGATGGCGTCACTACCTTACACTTGTCAATCACAAAGTCCTTCGCCATACTTTGACCTATCATTGTTTCGGTATGATGAGAAGCTGATTTCAGCGATTGATCGGCACAGACACTGTACAGAGCATCCAATAAAATTTATATCAGTGAAACAGCCAAATGTTGTCAAATTCAAGATAAAACCAGGTTCAGATTCTGGTGCTTCTGACAGCAGGGCAAAAAGAATATCTTCCTTCTTGTTTCACCCATTTTTCCCTCTCGCACTTTCTATTCAGCAGACATATATGCAGCCAACTGTTGTCAATTTACATTTCAGGAGATAGAACGATATTGCCGTTCCCTCAATTGTATTTGTAACAGTTGTGAGCGGTGCACAGCTCAGTAAAAATTTTGGCCGCTTGTAGTAGGATGTTTTATCGGCAAAGATCTTATTATAGGCAAAGGAAAAATGTGGGT ]
[+] EMBL CB635144 [ CGCCCGCGCCGCAGCAAGCAGGAGGGCCTCCGCCCGTGCGATGCCGGCGGCGGCTAGGCTACGGGCGGCCCGGTGATGGCGACCTTCTTCCGCAGCGCCAACCTCGCCTCCAGGGTCTTCGACCGCCAGTTCCTCTCCCCACGCCCCGGCGCTACTGTTAACACTGTTAGACAGTTCTATGAGAACTTGGTTCCGAGTTACACTATATGTGACATAGATTGCCCAGATTATTCATTTCGTAAATTCACTGATGATGGCAACTATCTTGTGGCTTTTAGCCGGAACCACCAAGATTTAATCGTGTACCGTCCCATCTGGCCAACATTTTCATGCAATGAGCCATGCGACTCTCATGATCTTCCACCCAAAGCAAAGAAATTCGACAGCTTCTTTAAGCAGCTCTACTCAATTTCACTTGCATCTAGCAATGAATACATCTGCAAGGACTTTTTCCTTTACATGGAGTGCCATCAGTTTGGCTTATTTGCCACATCAACTGCACAAAGCAACGATTCAAGTGCCACTGAGGGTGCTATTCATGGGGTACCATCAATTGAGAAAATTACTTTCTATCTTGTCAGGCTAGACGATGGCGCAATACTAGATGAGAAAGCTTTCCGCAATGATTTTATCAATCTGGCTCATAGTATTGGAGCTTACTTGTATGAGGACCTGCTATGCATTGTCTCTCTTCGATATCAAACAATTCATGTCCTACAGATACGAGATTCAGGCAACCTTGTTGAAGTACGCAAAATTGGTGCATTTTGCCAGGAAGATGATGAGCTATTTCTCCATTCACATGGTCAGGCTGCACGAGGTGTTTCTTT ]
[-] EMBL CF325866 [ ATGGAAATTTTATCTCGTCACATTCCAATAATGTTCATGCTCTCGATCAACTTCGGACAATTAAAAATAAAGCAAACAGCACCTCACAGTTTGTGAAAAAGATGATGGCGTCACTACCTTACACTTGTCAATCACAAAGTCCTTCGCCATACTTTGACCTATCATTGTTTCGGTATGATGAGAAGCTGATTTCAGCGATTGATCGGCACAGACACTGTACAGAGCATCCAATAAAATTTATATCAGTGAAACAGCCAAATGTTGTCAAATTCAAGATAAAACCAGGTTCAGATTCTGGTGCTTCTGACAGCAGGGCAAAAAGAATATCTTCCTTCTTGTTTCACCCATTTTTCCCTCTCGCACTTTCTATTCAGCAGACATATATGCAGCCAACTGTTGTCAATTTACATTTCAGGAGATAGAACGATAAAACAGTTCCCTCAATTGTATTTGTAACAGTTGTGAGCGGTGCACAGCTCAGTAAAAATTTTGGCCGCTTGTAGTAGGATGTTTTATCGGCAAAGATCTTATTATAGGCAAAGGAAAAAAAAAAAAAAAAAAACTCGAGACTAGTT]
consensusID : consensus_12988#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 842 fasta sequence
[ATTTTCAAAATTTCACAGTTTACAGTCAAGTTCAAACTTCAAACACATAGAAGATGCTACCTTGACTAACAAATATGTGACACAATCTTCTCTAAATATAAGCCACGCGAGGCGCTTTTGTCTATTTTCTCCCCCTTTTGCCCCTGGTAAATAAAAACTACAACTCGCATGAATTATGGTTGTTCTTTTCCGTGTGGGCATAACTGAAGGGTAAGAAAATCATCTACCCCCTTTTGTAGGTCCCTTTGATCCACTCCTATGAATAAATGGCAGTTTTTTTTTTTTCTTATTGTTATTTAGTTCTTGACATTTCCTTGTCCCTCGTTTTCAGCTGATTTCAGCGATTGATCGGCACAGACACTGTACAGAGCATCCAATAAAATTTATATCAGTGAAGCAGCCAAATGTTGTCAAATTCAAGATAAAACCAGGTTCAGATTCTGGTGCTTCTGACAGCAGGGCAAAAAGAATATCTTCCTTCTTGTTTCACCCATTTTTCCCTCTCGCACTTTCTATTCAGCAGACATATATGCAGCCAACTGTTGTCAATTTACATTTCAGGAGATAGAACGATATTGCCGTTCCCTCAATTGTATTTGTAACAGTTGTGAGCGGTGCACAGCTCAGTAAAAATTTTGGCCGCTTGTAGTAGGATGTTTTATCGGCAAAGATCTTATTATAGGCAAAGGAAAAATGTGGGTTTAGGTTCTCCTTGCTTCGAGTATGCTGGAATGTACATTTTGTAGGAATATGGCTGTCTGAAGGTAAATGTAGTTCATCTAAAAAAGGAAGGTAAAATAGAGTTAACAAAATGAGCTTTTATTTTGAATTCAAAAAAAAAA]
[-] EMBL CB673009 [ATTTTCAAAATTTCACAGTTTACAGTCAAGTTCAAACTTCAAACACATAGAAGATGCTACCTTGACTAACAAATATGTGACACAATCTTCTCTAAATATAAGCCACGCGAGGCGCTTTTGTCTATTTTCTCCCCCTTTTGCCCCTGGTAAATAAAAACTACAACTCGCATGAATTATGGTTGTTCTTTTCCGTGTGGGCATAACTGAAGGGTAAGAAAATCATCTACCCCCTTTTGTAGGTCCCTTTGATCCACTCCTATGAATAAATGGCAGTTTTTTTTTTTTCTTATTGTTATTTAGTTCTTGACATTTCCTTGTCCCTCGTTTTCAGCTGATTTCAGCGATTGATAGGCACTGACACTGTACAGAGCATCCAATAAAATTCATATCAGTGAAGCAGCCAAATGTTGTCAAATTCAAGATAAAACCAGGTTCAGATTTTGGTGCTTTTGACAGCAGGGCAAAAAGAATTTTTTCCTTCTTGTTTCACCCATTTTTCCCTCTCGCACTTTTTATTCAGCAGACATATATGCAGCCAACTGTTGTCAATTTACATTTCAGGAGATAGAAAGATATTGCCGTTCCCTCAATTGTATTTGTAACAGTTATGAGCGGTGCACAGCTCAGTAAAAATTTTGGCCGCCTGTAGTAGGATGTTTTATCGGCAAAGATCTTATTATTTCTAAGGGAAAAATGTGGTTTTAG ]
[-] EMBL CB635145 [ AACACATAGAAGATGCTACCTTGACTAACAAATATGTGACACAATCTTCTCTAAATATAAGCCATGCGAGGCACTTTTGTCTATTTTATCCCCCTTTTGACTTTGCTAAATAAAAACTACCACTGGCATGAATTATGGTTGTTCTTTTCCATGTGGGCATAACTGAAGGGTAAGAAAATCATCTACCCACTTTCATAGGTCCCTTTGATCCACTCCTATGAATAAAT GTTAGTTTTTTTTCTTATTGTTATTTAGTTCTTGACATTTCCTTGTCCCTCGTTTTCAGCTGATTTCAGCGATTGATCGGCACAGACACTGTACAGAGCATCCAATAAAATTTATATCAGTGAAACAGCCAAATGTTGTCAAATTCAAGATAAAACCAGGTTCAGATTCTGGTGCTTCTGACAGCAGGGCAAAAAGAATATCTTCCTTCTTGTTTCACCCATTTTTCCCTCTCGCACTTTCTATTCAGCAGACATATATGCAGCCAACTGTTGTCAATTTACATTTCAGGAGATAGAACGATATTGCCGTTCCCTCAATTGTATTTGTAACAGTTGTGAGCGGTGCACAGCTCAGTAAAAATTTTGGCCGCTTGTAGTAGGATGTTTTATCGGCAAAGATCTTATTATAGGCAAAGGAAAAATGTGGGTTTAGGTTCTCCTTGCTTCGAGTATGCTGGAATGTACATTTTGTAGGAATATGGCTGTCTGAAGGTAAATGTAGTTCATCTAAAAAAGGAAGGTAAAATAGAGTTAACAAAATGAGCTTTTATTTTGAATT ]
[-] EMBL CA998417 [ GCTGATTTCAGCGATTGATCGGCACAGACACTGTACAGAGCATCCAATATAATTTATATCAGTGAACCAGCCAAATGTTGTCAAATTCAAGATAAAACCAGGTTCAGATTATGGTGCTTCTGACAGCAGGGCAAAAAGAATATCTTCGTTCTTGTTTCACCCATTTTTCCCTCTCGCACTTTCTATTCAGCAGACATATATGCAGCCAACTGTTGTCAATTTACATTTCAGGAGATAGAGCGATATTGCCGTTCCCTCAATTGTATTTGTAACAGTTGTCAGCGGTGCACAGCTCAGTAAAAATTTTGGCCGCTTGTAGTAGGATGTTTTATCGGCAAAGATCTTATTATAGGCAAAGGAAAAATGTGGGTTTAGGTTCTCCTTGCTTCGAGTATGCTGGAATGTACATTTAGTAGGAATATGGCTGTCTGAAGGTAAATGTAGTTCATATCAA ]
[-] EMBL CA998418 [ CAAATTCATGATAAACCCAGGTTCAGATTCTGGTGCTTCTGACAGCAGGGCAAAAAGAATATCTTCCTTCTTGTTTCACCCATTTTTCCCTCTCGCACTTTGTATTCAGCAGACATATATGCAGCCAACTGTTGTCTATTTACATTTCAGGAGATAGAGCGATATTGCCGTTCCGTCAATTGTATTTGTAACAGTTGTGAGCGGTGCACAGCTCAGTAAAAATTTTGGCCGCTCGTAGTAGGATGTTTTATCGGCAAAGATCTTATTATAGGCAAAGGAAAAACGTGGGTTTAGGTTCTCTTTGCTTGGAGTATGCTGGCATGTACATTTTGTAGGAATATGGCTGTGTGAAGGTAAATGTAGTTCATATAA ]
[+] EMBL BI813816 [ CCCTCTCGCACTTTCTATTCAGCAGACATATATGCAGCCAACTGTTGTCAATTTACATTTCAGGAGATAGAACGATATTGCCGTTCCCTCAATTGTATTTGTAACAGTTGTGAGCGGTGCACAGCTCAGTAAAAATTTT GCCGCCTGTAGTAGGATGTTTTATCGGCAAAGATCTTATTATAGGCAAAGGAAAAATGTGGGTTTAGGTTCTCCTTGCTTCGATTATGCTGGAATATACATTTTGTAGGAATATGGCTGTCTGAAGGTAAATGTAGTTCATCTAAAAAAGGAAGGTAAAATAGAGTTAAC AAATGAGCTTTTATTTTGAATTCAAAAAAAAAA]
consensusID : consensus_12988#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 798 fasta sequence
[AGGGTATTATTTTTTTTGACTCACTACAGTTCTTGGCTCTGTTATTCTGTTTTTATTGTTTCCACAAGGTGTGAGGTTGTTTGAAAGTTATTGTGCTAATTCCTACATCTTTTGCAATGTTCTGATTAAAAACCGCACGAGTTTCAATTATTAAGTCAATACTGCTCAGTTCTACATGCTTGGATATAATGTACAGCAACACTAAATCACCAACATTGTACTGAATAATACACTAAATCCCAAATGCATAATGAAAGTTTTCTTATTTTCTGAATCGTCTTGGCATTGAACTGTCTATGATGTGAGGAATTTAAAAGGTATCCCTGTATTACCCTTAAGCCTTGAACCTTGTGAGCTTGAGCAGTCTTCCAGTAAGGGCCTTTTTTTATGTCTGCTTTCTATTAACACCAGGACAAGTGGTTTGCTTGTGAAAATTGTAGAATGAGCCAGATCTTTGTTACGGAAAGCTAGAGGTGTGAAATTACTAGTTGATGATCTTGGATATTTCTTGAAATCCACATTTATTTAATGTTATCTTACTATTTATATATGGCATAAGGCATATGCTAACTAATTTGTGATGCTGACTTTTGGTAAATGCCTGCTCTATATTTAGCAGTTTGTTAAAAAGATGATGGCGTCACTACCTTACACTTGTCAATCACAAAGTCCTTCACCATACTTTGACCTATCATTGTTTCGGTATGATAAGGTACACTCTTCAACTTGTTTGAAATAACTATACATCAGACAGCAGTTGATATTTTCAAAATTTCACAGTTTACAGTCAAGTTCAAA]
[+] EMBL CB673008 [AGGGTATTATTTTTTTTGACTCACTACAGTTCTTGGCTCTGTTATTCTGTTTTTATTGTTTCCACAAGGTGTGAGGTTGTTTGAAAGTTATTGTGCTAATTCCTACATCTTTTGCAATGTTCTGATTAAAAACCGCACGAGTTTCAATTATTAAGTCAATACTGCTCAGTTCTACATGCTTGGATATAATGTACAGCAACACTAAATCACCAACATTGTACTGAATAATACACTAAATCCCAAATGCATAATGAAAGTTTTCTTATTTTCTGAATCGTCTTGGCATTGAACTGTCTATGATGTGAGGAATTTAAAAGGTATCCCTGTATTACCCTTAAGCCTTGAACCTTGTGAGCTTGAGCAGTCTTCCAGTAAGGGCCTTTTTTTATGTCTGCTTTCTATTAACACCAGGACAAGTGGTTTGCTTGTGAAAATTGTAGAATGAGCCAGATCTTTGTTACGGAAAGCTAGAGGTGTGAAATTACTAGTTGATGATCTTGGATATTTCTTGAAATCCACATTTATTTAATGTTATCTTACTATTTATATATGGCATAAGGCATATGCTAACTAATTTGTGATGCTGACTTTTGGTAAATGCCTGCTCTATATTTAGCAGTTTGTTAAAAAGATGATGGCGTCACTACCTTACACTTGTCAATCACAAAGTCCTTCACCATACTTTGACCTATCATTGTTTCGGTATGATAAGGTACACTCTTCAACTTGTTTGAAATAACTATACATCAGACAGCAGTTGATATTTTCAAAATTTCACAGTTTACAGTCAAGTTCAAA]
consensusID : consensus_12988#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 371 fasta sequence
[TAGATGAACANCATCTGGTGCTTCTGACAGCAGGGGCAAAAAGAAATATCTCCTTCTTGTTTCACCCATTTTTCCCTCTCGCACTTTCTATTCAGCAGACATATATGCAGCCAACTGTTGTCAATTTACATTTCAGGGAGATAGAAACGATATTGCCGTTCCCTCAATTGTATTTGTTTACAGTTGTGNAGCGGTGCACAGCTCAANTAAAAATTTTGGGNCGCCTGTNATTAGGATGTTTTATCGGCCAAAGATCTTATTATANGGCCAAAGGAAAAATGTGGGTTTTAAGGTTCTCCTTGCTTCNAATTATGCTGGAAATATACATTTTTGTTATGAAATATGGGCTGTCTGAAAGGTAAATGTTANTT]
[+] EMBL AA754616 [TAGATGAACANCATCTGGTGCTTCTGACAGCAGGGGCAAAAAGAAATATCTCCTTCTTGTTTCACCCATTTTTCCCTCTCGCACTTTCTATTCAGCAGACATATATGCAGCCAACTGTTGTCAATTTACATTTCAGGGAGATAGAAACGATATTGCCGTTCCCTCAATTGTATTTGTTTACAGTTGTGNAGCGGTGCACAGCTCAANTAAAAATTTTGGGNCGCCTGTNATTAGGATGTTTTATCGGCCAAAGATCTTATTATANGGCCAAAGGAAAAATGTGGGTTTTAAGGTTCTCCTTGCTTCNAATTATGCTGGAAATATACATTTTTGTTATGAAATATGGGCTGTCTGAAAGGTAAATGTTANTT]
consensusID : consensus_12988#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 368 fasta sequence
[GGGTCGACCCACGGCGTCCGCACCACGCGTCCGGTTACTAGTGGTCTGTGGCCGATCAAATCGGCTGGAGAATTTATATCAAGTGGAAACTAGCCAAATGTTGTCAAAATTCATAGATANAAACCAAGGTTCTAGATTCTGGTGCNTTCTGACAAGCAGGGCCAAAAGAGAATATCGTTCCTTCTTGTTTCAACACCAATTTTTCCACTCCNTCTGCACTTTCTATTCGAGCAGACATATATGCAGCCAACTGTTGTCAATTTACATTTCAGGAGATAGAACGATATTGCCGTTCCCTCAATTGTATTTGTAACAGTTGTGAGCGGTGCACAGCTCAGTAAAAATTTTGGCCGCCTGTAAAAAAAAAA]
[+] EMBL BQ906741 [GGGTCGACCCACGGCGTCCGCACCACGCGTCCGGTTACTAGTGGTCTGTGGCCGATCAAATCGGCTGGAGAATTTATATCAAGTGGAAACTAGCCAAATGTTGTCAAAATTCATAGATANAAACCAAGGTTCTAGATTCTGGTGCNTTCTGACAAGCAGGGCCAAAAGAGAATATCGTTCCTTCTTGTTTCAACACCAATTTTTCCACTCCNTCTGCACTTTCTATTCGAGCAGACATATATGCAGCCAACTGTTGTCAATTTACATTTCAGGAGATAGAACGATATTGCCGTTCCCTCAATTGTATTTGTAACAGTTGTGAGCGGTGCACAGCTCAGTAAAAATTTTGGCCGCCTGTAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12988#1 ------------------------------------------------------------
consensus_12988#3 ------------------------------------------------------------
consensus_12988#0 AGTAAGGAACACAGGCGCCGCGGCCACAACCCACACGCGAACCGGCGAACACGAGCGAGA 60
consensus_12988#4 ------------------------------------------------------------
consensus_12988#2 ------------------------------------------------------------
consensus_12988#1 ------------------------------------------------------------
consensus_12988#3 ------------------------------------------------------------
consensus_12988#0 GTGCGAGAGCGAGACGCATCCTGCCACCACCGGCGACCAAGGCCCGCAGCGAGCCGGTCG 120
consensus_12988#4 ------------------------------------------------------------
consensus_12988#2 ------------------------------------------------------------
consensus_12988#1 ------------------------------------------------------------
consensus_12988#3 ------------------------------------------------------------
consensus_12988#0 CACGGTGGCACCTCGCGTCCTCGGCCCCTCCTCCTCGCCATCCGCCCATCCCTCGTCGGT 180
consensus_12988#4 ------------------------------------------------------------
consensus_12988#2 ------------------------------------------------------------
consensus_12988#1 ------------------------------------------------------------
consensus_12988#3 ------------------------------------------------------------
consensus_12988#0 CGCGGCCTCCCCGAACGAGCTGGCTCCGAGCCGAGCCAGCTCGGTACACTAACGAGCTGG 240
consensus_12988#4 ------------------------------------------------------------
consensus_12988#2 ------------------------------------------------------------
consensus_12988#1 ------------------------------------------------------------
consensus_12988#3 ------------------------------------------------------------
consensus_12988#0 AGCGAGCCGAGCCGAGCCAAGATATCCACCCCTAGTGTGGCCACAAACAACAAGAGAGAG 300
consensus_12988#4 ------------------------------------------------------------
consensus_12988#2 ------------------------------------------------------------
consensus_12988#1 ------------------------------------------------------------
consensus_12988#3 ------------------------------------------------------------
consensus_12988#0 CAGACACCACCACACCATCCAACCAACCAAATTCCTCTCTCCTCCGCCGCGCCCGCGCCG 360
consensus_12988#4 ------------------------------------------------------------
consensus_12988#2 ------------------------------------------------------------
consensus_12988#1 ------------------------------------------------------------
consensus_12988#3 ------------------------------------------------------------
consensus_12988#0 CAGCAAGCAGGAGGGCCTCCGCCCGTGCGATGCCGGCGGCGGCTAGGCTACGGGCGGCCC 420
consensus_12988#4 ------------------------------------------------------------
consensus_12988#2 ------------------------------------------------------------
consensus_12988#1 ------------------------------------------------------------
consensus_12988#3 ------------------------------------------------------------
consensus_12988#0 GGTGATGGCGACCTTCTTCCGCAGCGCCAACCTCGCCTCCAGGGTCTTCGACCGCCAGTT 480
consensus_12988#4 ------------------------------------------------------------
consensus_12988#2 ------------------------------------------------------------
consensus_12988#1 ------------------------------------------------------------
consensus_12988#3 ------------------------------------------------------------
consensus_12988#0 CCTCTCCCCACGCCCCGGCGCTACTGTTAACACTGTTAGACAGTTCTATGAGAACTTGGT 540
consensus_12988#4 ------------------------------------------------------------
consensus_12988#2 ------------------------------------------------------------
consensus_12988#1 ------------------------------------------------------------
consensus_12988#3 ------------------------------------------------------------
consensus_12988#0 TCCGAGTTACACTATATGTGACATAGATTGCCCAGATTATTCATTTCGTAAATTCACTGA 600
consensus_12988#4 ------------------------------------------------------------
consensus_12988#2 ------------------------------------------------------------
consensus_12988#1 ------------------------------------------------------------
consensus_12988#3 ------------------------------------------------------------
consensus_12988#0 TGATGGCAACTATCTTGTGGCTTTTAGCCGGAACCACCAAGATTTAATCGTGTACCGTCC 660
consensus_12988#4 ------------------------------------------------------------
consensus_12988#2 ------------------------------------------------------------
consensus_12988#1 ------------------------------------------------------------
consensus_12988#3 ------------------------------------------------------------
consensus_12988#0 CATCTGGCCAACATTTTCATGCAATGAGCCATGCGACTCTCATGATCTTCCACCCAAAGC 720
consensus_12988#4 ------------------------------------------------------------
consensus_12988#2 ------------------------------------------------------------
consensus_12988#1 ------------------------------------------------------------
consensus_12988#3 ------------------------------------------------------------
consensus_12988#0 AAAGAAATTCGACAGCTTCTTTAAGCAGCTCTACTCAATTTCACTTGCATCTAGCAATGA 780
consensus_12988#4 ------------------------------------------------------------
consensus_12988#2 ------------------------------------------------------------
consensus_12988#1 ------------------------------------------------------------
consensus_12988#3 ------------------------------------------------------------
consensus_12988#0 ATACATCTGCAAGGACTTTTTCCTTTACATGGAGTGCCATCAGTTTGGCTTATTTGCCAC 840
consensus_12988#4 ------------------------------------------------------------
consensus_12988#2 ------------------------------------------------------------
consensus_12988#1 ------------------------------------------------------------
consensus_12988#3 ------------------------------------------------------------
consensus_12988#0 ATCAACTGCACAAAGCAACGATTCAAGTGCCACTGAGGGTGCTATTCATGGGGTACCATC 900
consensus_12988#4 ------------------------------------------------------------
consensus_12988#2 ------------------------------------------------------------
consensus_12988#1 ------------------------------------------------------------
consensus_12988#3 ------------------------------------------------------------
consensus_12988#0 AATTGAGAAAATTACTTTCTATCTTGTCAGGCTAGACGATGGCGCAATACTAGATGAGAA 960
consensus_12988#4 ------------------------------------------------------------
consensus_12988#2 ------------------------------------------------------------
consensus_12988#1 ------------------------------------------------------------
consensus_12988#3 ------------------------------------------------------------
consensus_12988#0 AGCTTTCCGCAATGATTTTATCAATCTGGCTCATAGTATTGGAGCTTACTTGTATGAGGA 1020
consensus_12988#4 ------------------------------------------------------------
consensus_12988#2 ------------------------------------------------------------
consensus_12988#1 ------------------------------------------------------------
consensus_12988#3 ------------------------------------------------------------
consensus_12988#0 CCTGCTATGCATTGTCTCTCTTCGATATCAAACAATTCATGTCCTACAGATACGAGATTC 1080
consensus_12988#4 ------------------------------------------------------------
consensus_12988#2 ------------------------------------------------------------
consensus_12988#1 ------------------------------------------------------------
consensus_12988#3 ------------------------------------------------------------
consensus_12988#0 AGGCAACCTTGTTGAAGTACGCAAAATTGGTGCATTTTGCCAGGAAGATGATGAGCTATT 1140
consensus_12988#4 ------------------------------------------------------------
consensus_12988#2 ------------------------------------------------------------
consensus_12988#1 ------------------------------------------------------------
consensus_12988#3 ------------------------------------------------------------
consensus_12988#0 TCTCCATTCACATGGTCAGGCTGCACGAGGTGTTTCTTTTCTTCCTGGCATCAAGCAACG 1200
consensus_12988#4 ------------------------------------------------------------
consensus_12988#2 ------------------------------------------------------------
consensus_12988#1 ------------------------------------------------------------
consensus_12988#3 ------------------------------------------------------------
consensus_12988#0 GTTGTTGTCATTTATTTTTCGCAAGACATGGAATGAGGAATCTGATCAGACCTTGAGAGT 1260
consensus_12988#4 ------------------------------------------------------------
consensus_12988#2 ------------------------------------------------------------
consensus_12988#1 ------------------------------------------------------------
consensus_12988#3 ------------------------------------------------------------
consensus_12988#0 CCAGCATCTGAAGAAGAAGTTCTATTTTCACTTTCAAGACTATGTTGATCTTATCATATG 1320
consensus_12988#4 ------------------------------------------------------------
consensus_12988#2 ------------------------------------------------------------
consensus_12988#1 ------------------------------------------------------------
consensus_12988#3 ------------------------------------------------------------
consensus_12988#0 GAAGGTGCAGTTTTTGGATCGTCATCACCTATTTATCAAGTTTGGTAGTGTGGATGGAGG 1380
consensus_12988#4 ------------------------------------------------------------
consensus_12988#2 ---------------------------------------AGGGTATTATTTTTTTTGACT 21
consensus_12988#1 -------------ATTTTCAAAATTTCACAGTTTACAGTCAAGTTCAAACTTCAAACACA 47
consensus_12988#3 ------------------------------------------------------------
consensus_12988#0 GGTTTCTCGCAGCACTGAACAGAATTCAGCATTCTTTGCTGTGTACAACATGGAGACGAC 1440
consensus_12988#4 ------------------------------------------------------------
consensus_12988#2 CACTACAGTTCTTGGCTCTGTTATTCTGTTTTTATTGTTTCCACAAGGTGTGAGGTTGTT 81
consensus_12988#1 TAGAAGATGCTACCTTGACTAACAAATATGTGACACAATCTTCTCTAAATATAAGCCACG 107
consensus_12988#3 ------------------------------------------------------------
consensus_12988#0 AGATATTGTTTCACTCTATCAGAATTCTTCGGAGGAGCTCTATTCATTGTTTGAATATTT 1500
consensus_12988#4 ------------------------------------------------------------
consensus_12988#2 TGAAAGTTATTGTGCTAATTCCTACATCTTTTGCAATGTTCTGATTAAAAACCGCACGAG 141
consensus_12988#1 CGAGG--CGCTTTTGTCTATTTTCTCCCCCTTTTGCCCCTGGTAAATAAAAACTACAACT 165
consensus_12988#3 ------------------------------------------------------------
consensus_12988#0 TTATGACCATTTTCACACAAATCCACAAAATTCATCGCATGGAAATTTTATCTCGTCACA 1560
consensus_12988#4 ------------------------------------------------------------
consensus_12988#2 TTTCAATTATTAAGTCAATACTGCTCAGTTCTACATGCTTGGATATAATGTACAGCAACA 201
consensus_12988#1 CGCATGAATTATGGTTGTTCTTTTCCGTGTGGGCATAACTGAAGGGTAAGAAAATCATCT 225
consensus_12988#3 ------------------------------------------------------------
consensus_12988#0 TTCCAATAATGTTCATGCTCTCGATCAACTTCGGACAATTAAAAATAAAGCAAACAGCAC 1620
consensus_12988#4 ------------------------------------------------------------
consensus_12988#2 CTAAATCACCAACATTGTACTGAATAATACACTAAATCCCAAATGCATAATGAA--AGTT 259
consensus_12988#1 ACCCCCTTTTGTAGGTCCCTTTGATCCACTCCTATGAATAAATGGCAGTTTTTTTTTTTT 285
consensus_12988#3 ------------------------------------------------------------
consensus_12988#0 CTCACAGTTTGTGAAAAAGATGATGGCGTCACTACCTTACACTTGTCAATCACAAAGTCC 1680
consensus_12988#4 ------------------------------------------------------------
consensus_12988#2 TTCTTATTTTCTGAATCGTCTTGGCATTGAACTGTCTATGATGTGAGGAATTTAAAAGGT 319
consensus_12988#1 CTTATTGTTATTTAGTTCTTGACATTTCCTTGTCCCTCGTTTTCAGCTGATTTCAGCGAT 345
consensus_12988#3 ------------------------------------------------------------
consensus_12988#0 TTCGCCATACTTTGACCTATCATTGTTTCGG---TATGATGAGAAGCTGATTTCAGCGAT 1737
consensus_12988#4 --------GGGTCGACC---CACGGCGTCCG---CACCACGCG--TCCGGTT---ACTAG 41
consensus_12988#2 ATCCCTGTATTACCCTTAAGCCTTGAACCTTGTGAGCTTGAGCAGTCTTCCAGTAAGGGC 379
consensus_12988#1 TGATCGGCACAGACACTGTACAGAGCATCCAATAAAATTTATATCA-GTGAAG--CAGCC 402
consensus_12988#3 ------------------------------------------------------------
consensus_12988#0 TGATCGGCACAGACACTGTACAGAGCATCCAATAAAATTTATATCA-GTGAAA--CAGCC 1794
consensus_12988#4 TGGTCTGTG-----GCCGATCAAATCGGCTGG-AGAATTTATATCAAGTGGAAACTAGCC 95
consensus_12988#2 CTTTTTTTATGTCTGCTTTCTATTAACACCAGGACAAGTGGTTTGCTTGTGAAAATTGTA 439
consensus_12988#1 AAATGTTGTCAAA-TTCA--AGATAAAACC--AGGTTC-AGATT-CTGGTGCTT-CTGAC 454
consensus_12988#3 -----------------T--AGATGAA----------C-ANCAT-CTGGTGCTT-CTGAC 28
consensus_12988#0 AAATGTTGTCAAA-TTCA--AGATAAAACC--AGGTTC-AGATT-CTGGTGCTT-CTGAC 1846
consensus_12988#4 AAATGTTGTCAAAATTCAT-AGATANAAACCAAGGTTCTAGATT-CTGGTGCNTTCTGAC 153
consensus_12988#2 GAATGAGCCAGATCTTTGTTACGGAAAGCTAGAGGTGTGAAATTACTAGTTGATGATCTT 499
* * * * ** ** * *
consensus_12988#1 A-GCAGGG-C-AAAAAGAATATC--TTCCTTCTTGTTTCA---CCCATTTTTCC----C- 501
consensus_12988#3 A-GCAGGGGC-AAAAAGAAATAT--CTCCTTCTTGTTTCA---CCCATTTTTCC----C- 76
consensus_12988#0 A-GCAGGGC--AAAAAGAATATC--TTCCTTCTTGTTTCA---CCCATTTTTCC----C- 1893
consensus_12988#4 AAGCAGGGCCAAAAGAGAATATCG-TTCCTTCTTGTTTCAACACCAATTTTTCCACTCC- 211
consensus_12988#2 GGATATTTCTTGAAATCCACATTTATTTAATGTTATCTTA----CTATTTATATATGGCA 555
* ** * * * ** * * * * **** * *
consensus_12988#1 TCTCGCACTTTCTATTC-AGCAGACATATATGCAGCCAACTGTTGTCAATT-TACATTT- 558
consensus_12988#3 TCTCGCACTTTCTATTC-AGCAGACATATATGCAGCCAACTGTTGTCAATT-TACATTT- 133
consensus_12988#0 TCTCGCACTTTCTATTC-AGCAGACATATATGCAGCCAACTGTTGTCAATT-TACATTT- 1950
consensus_12988#4 NTCTGCACTTTCTATTCGAGCAGACATATATGCAGCCAACTGTTGTCAATT-TACATTT- 269
consensus_12988#2 TAAGGCATATGCTAACTAATTTGTGATGCTGACTTTTGGTAAATGCCTGCTCTATATTTA 615
*** * *** * * ** * ** * * ** ****
consensus_12988#1 -CAGG-AGATAGAA-CGATATTGCCGTTCCCTCAATTGTATTTGTA-ACAGTTGTGA-GC 613
consensus_12988#3 -CAGGGAGATAGAAACGATATTGCCGTTCCCTCAATTGTATTTGTTTACAGTTGTGNAGC 192
consensus_12988#0 -CAGG-AGATAGAA-CGATATTGCCGTTCCCTCAATTGTATTTGTA-ACAGTTGTGA-GC 2005
consensus_12988#4 -CAGG-AGATAGAA-CGATATTGCCGTTCCCTCAATTGTATTTGTA-ACAGTTGTGA-GC 324
consensus_12988#2 GCAGTTTGTTAAAA-AGATGATGGCGT-CACTACCTTACACTTGT---CAATCACAAAGT 670
*** * ** ** *** ** *** * ** ** * **** ** * *
consensus_12988#1 GGTGCACAGCTCA-GTAAAAATTTTGG-CCGCTTGTAGT-AGGATGTTTTATCGGC---A 667
consensus_12988#3 GGTGCACAGCTCAANTAAAAATTTTGGGNCGCCTGTNATTAGGATGTTTTATCGGCC--A 250
consensus_12988#0 GGTGCACAGCTCA-GTAAAAATTTTGG-CCGCTTGTAGT-AGGATGTTTTATCGGC---A 2059
consensus_12988#4 GGTGCACAGCTCA-GTAAAAATTTTGG-CCGCCTGTAAA-AAAAAAA------------- 368
consensus_12988#2 CCTTCACCATACTTTGACCTATCATTGTTTCGGTATGATAAGGTACACTCTTCAACTTGT 730
* *** * * ** * * * * *
consensus_12988#1 AAGATCTTATTATAGG--CAAAGGAAAAATGTGGGTTT--AGGTTCTCCTTGCTTCGAGT 723
consensus_12988#3 AAGATCTTATTATANGGCCAAAGGAAAAATGTGGGTTTTAAGGTTCTCCTTGCTTCNAAT 310
consensus_12988#0 AAGATCTTATTATAGG--CAAAGGAAAAATGTGGGTAAAAAAACTCGAGACTAGTT---- 2113
consensus_12988#4 ------------------------------------------------------------
consensus_12988#2 TTGAAATAACTATACA--TCAGACAGCAGTTGATATTTTCAAAATTTCACAGTTTACAGT 788
consensus_12988#1 -ATGCTGGAA-TGTACATTTT-GTA--GGAATATGG-CTGTCTGAA-GGTAAATGTAGTT 776
consensus_12988#3 TATGCTGGAAATATACATTTTTGTTATGAAATATGGGCTGTCTGAAAGGTAAATGTTANT 370
consensus_12988#0 ------------------------------------------------------------
consensus_12988#4 ------------------------------------------------------------
consensus_12988#2 CAAGTTCAAA-------------------------------------------------- 798
consensus_12988#1 CATCTAAAAAAGGAAGGTAAAATAGAGTTAACAAAATGAGCTTTTATTTTGAATTCAAAA 836
consensus_12988#3 T----------------------------------------------------------- 371
consensus_12988#0 ------------------------------------------------------------
consensus_12988#4 ------------------------------------------------------------
consensus_12988#2 ------------------------------------------------------------
consensus_12988#1 AAAAAA 842
consensus_12988#3 ------
consensus_12988#0 ------
consensus_12988#4 ------
consensus_12988#2 ------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||