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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13045#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1890 fasta sequence
[TCCTCCTCTTTCCCCTCTCCTCCCTCTCCACTCCACACGCCGTACTCGCCTCCGTCTTCCCCCCCGATCTGCGGGCGCGCGAGCTCGGAGCGTCCTTCCCCGCGCGCGCCGCCGCCACCGCCGAGAGAGTGGCCTCCTCCTCCTCCTCCCTTCCTTCCCGCGTGGCCTGGGCCTGCGGTTACCCCGCGCGCACGGCCGACGACGACTGCGACGGCGACGAAGGCGAGCTGGTTTCGGAGGGGGGCGCGACGCGGCCGACCTGCTCCCCCATCTGGTTCGAATCGAAAGGTGGATGCCAATCGGTTGGTCGGTTAAAAACAACTAATTTAGCTGATCCTGTGGGGAAGAAGTAATGGTACTGCCAGGCTCTAAGGAGTCTCAAAATTATGATAGCAACAACCAGAAGGTTCATCCTCAACCAATTGACGAAAACATGAATCAGAACTTGCTGAAGACATATGAGGTCATGGTAAAGAAGTTCCAGTCCCAAATCCAGACTAGAGATACTGAGATAACACATTTACAGCAGCAAATCGATGAGGCTAAACTTCGGAAATCAAAGCTTGAGAAGAAACTGAAACAAAGGGGCTTACTCAACAAGGAATCTGAGGAATCTGATGATGAAGACAACTACTTTTCCATCGAGTTGACACCAAGTTTATTTACATCTGCTGTTGATAATGCATACCAATCTATACATGATTTTTCAAAGCCTTTGATCAACATGATGAAAGCTGCAGGGTGGGATCTTGATGCTGCTGCTAATGCAATTGAACCTGCTGTGGTTTACACAAGGAGGGCTCACAAAAAGTATGCTTTCGAGTCATATATTTGCCAAAGAATGTTTGGTGGTTTCCAAGAAGAGAGCTTTTCTGTTAAGGCTGCTAACATTACTGTTTCCAATGAGGCTTTCTTCCATCAGTTCCTTGCAGTACGAGCCGTGGATCCTTTGGATGTCTTGAGCCAAAATCCTGATTCGGTTTTTGGGAAGTTTTGCAGAAGCAAGTACCTATTACTTGTGCACCCAAAAATGGAAGGCTCTTTCTTTGGTAACATGGATCAGAGAAACTATGTAATGAGCGGTGGCCATCCGAGGACACCTTTCTATCAAGCATTTCTGAAGTTAGCGAAGTCGATATGGTTACTGCACAGGCTGGCATACTCCTTTGATCCAAAAGTCAAGGTCTTTCAAGTGAAGAAGGGGAGTGACTTCTCCGAAATTCACATGGAAAGTGTTGTCAAGAACATCATCCTAGATGAAGGTGCAGAGAGGCCTAAAGTTGGCCTAATGGTGATGCCTGGGTTCTTGATTGGGACTAGTGTCATACAAGCTCGGGTGTATCTTTCAGGTGTCAAGTCTGCTGATTGAAGCTGATGCAGTTACTCGAGAAGATCAAGGCTACTTTGCATCTTGCCTGATCAACCAATCACATTAGTACAAGGACGATTAAGGGTCTTGTGTGTGATGCTGCTGTCATCTCTGAAAGATGCTATAGTCAGAGTGTCGGTGAAAAATATTGTCTTTTTAAAATTTCGAGTGCCATGCTGTTTGTATGTTTCTTCAGATAGATTTCTTCTGTAATGTAACTGTCAAATGTTTGTCTATATATATGTTTAT--GTGTGTTTTGACTGGCATCCTAGGCGTGTAAACTTCCTATGATGCTCCTTTGCAAAATTTGTAATTCACGGCTATTCACCAGAATGTAGTATGCTCTGGAAACTAGTGTGTCCATGCTTTGCACAATCAGGCTCATATAATTGGGGATTGGTTGGGGTATATTGAGGATAGAACACACTGGGAAGAGGATGGATGCGCTTTTGATGTAGAGATGGTGCAGTCAAAATTTGATACCAATAATATGAAGGGTATCTAAAAAAAAAAAAAAAAGA]
[+] EMBL AK059720 [TCCTCCTCTTTCCCCTCTCCTCCCTCTCCACTCCACACGCCGTACTCGCCTCCGTCTTCCCCCCCGATCTGCGGGCGCGCGAGCTCGGAGCGTCCTTCCCCGCGCGCGCCGCCGCCACCGCCGAGAGAGTGGCCTCCTCCTCCTCCTCCCTTCCTTCCCGCGTGGCCTGGGCCTGCGGTTACCCCGCGCGCACGGCCGACGACGACTGCGACGGCGACGAAGGCGAGCTGGTTTCGGAGGGGGGCGCGACGCGGCCGACCTGCTCCCCCATCTGGTTCGAATCGAAAGGTGGATGCCAATCGGTTGGTCGGTTAAAAACAACTAATTTAGCTGATCCTGTGGGGAAGAAGTAATGGTACTGCCAGGCTCTAAGGAGTCTCAAAATTATGATAGCAACAACCAGAAGGTTCATCCTCAACCAATTGACGAAAACATGAATCAGAACTTGCTGAAGACATATGAGGTCATGGTAAAGAAGTTCCAGTCCCAAATCCAGACTAGAGATACTGAGATAACACATTTACAGCAGCAAATCGATGAGGCTAAACTTCGGAAATCAAAGCTTGAGAAGAAACTGAAACAAAGGGGCTTACTCAACAAGGAATCTGAGGAATCTGATGATGAAGACAACTACTTTTCCATCGAGTTGACACCAAGTTTATTTACATCTGCTGTTGATAATGCATACCAATCTATACATGATTTTTCAAAGCCTTTGATCAACATGATGAAAGCTGCAGGGTGGGATCTTGATGCTGCTGCTAATGCAATTGAACCTGCTGTGGTTTACACAAGGAGGGCTCACAAAAAGTATGCTTTCGAGTCATATATTTGCCAAAGAATGTTTGGTGGTTTCCAAGAAGAGAGCTTTTCTGTTAAGGCTGCTAACATTACTGTTTCCAATGAGGCTTTCTTCCATCAGTTCCTTGCAGTACGAGCCGTGGATCCTTTGGATGTCTTGAGCCAAAATCCTGATTCGGTTTTTGGGAAGTTTTGCAGAAGCAAGTACCTATTACTTGTGCACCCAAAAATGGAAGGCTCTTTCTTTGGTAACATGGATCAGAGAAACTATGTAATGAGCGGTGGCCATCCGAGGACACCTTTCTATCAAGCATTTCTGAAGTTAGCGAAGTCGATATGGTTACTGCACAGGCTGGCATACTCCTTTGATCCAAAAGTCAAGGTCTTTCAAGTGAAGAAGGGGAGTGACTTCTCCGAAATTCACATGGAAAGTGTTGTCAAGAACATCATCCTGGATGAAGGTGCAGAGAGGCCTAAAGTTGGCCTAATGGTGATGCCTGGGTTCTTGATTGGGACTAGTGTCATACAATCTCGGGTGTATCTTTCAGGTGTCAAGTCTGCTGATTGAAGCTGATGCAGTTACTCGAGAAGATCAAGGCTACTTTGCATCTTGCCTGATCAACCAATCACATTAGTACAAGGACGATTAAGGGTCTTGTGTGTGATGCTGCTGTCATCTCTGAAAGATGCTATAGTCAGAGTGTCGGTGAAAAATATTGTCTTTTTAAAATTTCGAGTGCCATGCTGTTTGTATGTTTCTTCAGATAGATTTCTTCTGTAATGTAACTGTCAAATGTTTGTCTATATATATGTTTAT GTGTGT ]
[+] EMBL CA767195 [ TGTGGTTTACACAAGGAGGGCTCACAAAAAGTATGCTTTCGAGTCATATATTTGCCAAAGAATGTTTGGTGGTTTCCAAGAAGAGAGCTTTTCTGTTAAGGCTGCTAACATTACTGTTTCCAATGAGGCTTTCTTCCATCAGTTCCTTGCAGTACGAGCCATGGATCCTTTGGATGTCTTGAGCCAAAATCCTGATTCGGTTTTTGGGAAGTTTTGCAGAAGCAAGTACCTATTACTTGTGCACCCAAAAATGGAAGGCTCTTTCTTTGGTAACATGGATCAGAGAAACTATGTAATGAGCGGTGGCCATCCGAGGACACCTTTCTATCAAGCACTTCTGAAGTTAGCGAAGTCGATATGGTTACTGCACAGGCTGGCATACTCCTTTGATCCAAAAGTCAAGGTCTTTCAAGTGAAGAAGGGGAGTGACTTCTCCGAAATTCACATGGAAAGTGTTGTCAAGAACATCATCCTAGATGAAGGTGCAGAGAGGCCTAAAGTTGGCCTAATGGTGATGCCTGGGTTCTTGATTGGGACTAGTGTCATACAAGCTCGGGTGTATCTTTCAGGTGTCGAGTCTGCTGATTGAAGCTGATGCAGTTACTCGAGAAGATCAAGGCTACTTTGCATCTTGCCTGATCAACCAATCACATTAGTACAAGGACGATTAAGGGTCTTGTGTGTGATGCTGCTGTCATCTCTGAAAGATGCTATAGTCAGAGTGTCGGTGAAAAATATTGTCTTTTTAAAATTTCGAGTGCCATGCTGGTTGGATGGTTCTTCAGANAGATTTCTTCTGTAATGNAACTGGCAAAAGGTTGGCTATATATATGGTTATGGGGGGGTTTTGA ]
[-] EMBL CB621508 [ GAAACTATGTAATGAGCGGTGGCCATCCGAGGACACCTTTCTATCAAGCATTTCTGAAGTTAGCGAAGTCGATATGGTTACTGCACAGGCTGGCATACTCCTTTGATCCAAAAGTCAAGGTCTTTCAAGTGAAGAAGGGGAGTGACTTCTCCGAAATTCACATGGAAAGTGTTGTCAAGAACATCATCCTAGATGAAGGTGCAGAGAGGCCTAAAGTTGGCCTAATGGTGATGCCTGGGTTCTTGATTGGGACTAGTGTCATACAAGCTCGGGTGTATCTTTCAGGTGTCAAGTCTGCTGATTGAAGCTGATGCAGTTACTCGAGAAGATCAAGGCTACTTTGCATCTTGCCTGATCAACCAATCACATTAGTACAAGGACGATTAAGGGTCTTGTGTGTGATGCTGCTGTCATCTCTGAAAGATGCTATAGTCAGAGTGTCGGTGAAAAATATTGTCTTTTTAAAATTTCGAGTGCCATGCTGTTTGTATGTTTCTTCAGATAGATTTCTTCTGTAATGTAACTGTCAAATGTTTGTCTATATATATGTTTAT GTGTGTTTTGACTGGCATCCTAGGCGTGTAAACTTCCTATGATGCTCCTTTGCAAAATTTGTAATTCACGGCTATTCACCAGAATGTAGTATGCTCTGGAAACTAGTGTGTCCATGCTTTGCACAATCAGGCTCATATAATTGGGGATTGGTTGGGGTATATTGAGGATAGAACACACTGGGAAGAGGATGGATGCGCTTTTGATGTAGAGATGGTGCAGTCAAAATTTGATACCAATAATATGAAGGGTATCTAAAAAAAAAAAAAAAAGA]
[-] EMBL CB622832 [ CTATGTAATGAGCGGTGGCCATCCGAGGACACCTTTCTATCAAGCATTTCTGAAGTTAGCGAAGTCGATATGGTTACTGCACAGGCTGGCATACTCCTTTGATCCAAAAGTCAAGGTCTTTCAAGTGAAGAAGGGGAGTGACTTCTCCGAAATTCACATGGAAAGTGTTGTCAAGAACATCATCCTAGATGAAGGTGCAGAGAGGCCTAAAGTTGGCCTAATGGTGATGCCTGGGTTCTTGATTGGGACTAGTGTCATACAAGCTCGGGTGTATCTTTCAGGTGTCAAGTCTGCTGATTGAAGCTGATGCAGTTACTCGAGAAGATCAAGGCTACTTTGCATCTTGCCTGATCAACCAATCACATTAGTACAAGGACGATTAAGGGTCTTGTGTGTGATGCTGCTGTCATCTCTGAAAGATGCTATAGTCAGAGTGTCGGTGAAAAATATTGTCTTTTTAAAATTTCGAGTGCCATGCTGTTTGTATGTTTCTTCAGATAGATTTCTTCTGTAATGTAACTGTCAAATGTTTGTCTATATATATGTTTAT GTGTGTTTTGACTGGCATCCTAGGCGTGTAAACTTCCTATGATGCTCCTTTGCAAAATTTGTAATTCACGGCTATTCACCAGAATGTAGTATGCTCTGGAAACTAGTGTGTCCATGCTTTGCACAATCAGGCTCATATAATTGGGGATTGGTTGGGGTATATTGAGGATAGAACACACTGGGAAGAGGATGGATGCGCTTTTGATGTAGAGATGGTGCAGTCAAAATGGGATACCAATAATATGAAGGtt ]
[-] EMBL CA998946 [ GACGATTAAGGGTCTTGTGTGTGATGCTGCTGTCATCTCTGAAAGATGCTATAGTCAGAGTGTCGGTGAAAAATATTGTCTTTTTAAAATTTCGAGTGCCATGCTGTTTGTATGTTTCTTCAGATAGATTTCTTCTGTAATGTAACTGTCAAATGTTTGTCTATATATATGTTTAT GTGTGTTTTGACTGGCATCCTAGGCGTGTAAACTTCCTATGATGCTCCTTTGCATAATTTGTAATTCACGGCTATTCACCAGAATG ]
consensusID : consensus_13045#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1871 fasta sequence
[CCCGATCTGCGGGCGCGCGAGCTCGGAGCGTCCTTCCCCGCGCGCGCCGCCGCCACCGCCGAGAGAGTGGCCTCCTCCTCCTCCTCCCTTCCTTCCCGCGTGGCCTGGGCCTGCGGTTACCCCGCGCGCACGGCCGACGACGACTGCGACGGCGACGAAGGCGAGCTGGTTTCGGAGGGGGGCGCGACGCGGCCGACCTGCTCCCCCATCTGGTTCGAATCGAAAGTATCTTTTCAGGTGGATGCCAATCGGTTGGTCGGTTAAAAACAACTAATTTAGCTGATCCTGTGGGGAAGAAGTAATGGTACTGCCAGGCTCTAAGGAGTCTCAAAATTATGATAGCAACAACCAGAAGGTTCATCCTCAACCAATTGACGAAAACATGAATCAGAACATGGGCTCAATGGACACCATGATTGGAAGGATATTCAACAATATATCCTCTTTAAAGTCTGCATACATTCAGCTGCAGGAAGCTCACACCCCATATGACCCAGACAAGATCCAGGCTGCAGATCAGCTTGTCATAGAGGAGCTCACGAAGCTCTCAGAGCTCAAGCATGCTTACAGAGAAAAGAATCCTAAGCCTGTAGCGGCAACACCTCAAGATGCACGGCTGCTTTCTGAAATACAAGAGCAACAGAACTTGCTGAAGACATATGAGGTCATGGTAAAGAAGTTCCAGTCCCAGATCCAGACTAGAGATACTGAGATAACACATTTACAGCAGCAAATCGATGAGGCTAAACTTCGGAAATCAAAGCTTGAGAAGAAACTGAAACAAAGGGGCTTACTCAACAAGGAATCTGAGGAATCTGATGATGAAGACAACTACTTTTCCATCGAGTTGACACCAAGTTTATTTACATCTGCTGTTGATAATGCATACCAATCTATACATGATTTTTCAAAGCCTTTGATCAACATGATGAAAGCTGCAGGGTGGGATCTTGATGCTGCTGCTAATGCAATTGAACCTGCTGTGGTTTACACAAGGAGGGCTCACAAAAAGTATGCTTTCGAGTCATATATTTGCCAAAGAATGTTTGGTGGTTTCCAAGAAGAGAGCTTTTCTGTTAAGGCTGCTAACATTACTGTTTCCAATGAGGCTTTCTTCCATCAGTTCCTTGCAGTACGAGCCATGGATCCTTTGGATGTCTTGAGCCAAAATCCTGATTCGGTTTTTGGGAAGTTTTGCAGAAGCAAGTACCTATTACTTGTGCACCCAAAAATGGAAGGCTCTTTCTTTGGTAACATGGATCAGAGAAACTATGTAATGAGCGGTGGCCATCCGAGGACACCTTTCTATCAAGCATTTCTGAAGTTAGCGAAGTCGATATGGTTACTGCACAGGCTGGCATACTCCTTTGATCCAAAAGTCAAGGTCTTTCAAGTGAAGAAGGGGAGTGACTTCTCCGAAATTCACATGGAAAGTGTTGTCAAGAACATCATCCTAGATGAAGGTGCAGAGAGGCCTAAAGTTGGCCTAATGGTGATGCCTGGGTTCTTGATTGGGACTAGTGTCATACAAGCTCGGGTGTATCTTTCAGGTGTCAAGTCTGCTGATTGAAGCTGATGCAGTTACTCGAGAAGATCAAGGCTACTTTGCATCTTGCCTGATCAACCAATCACATTAGTACAAGGACGATTAAGGGTCTTGTGTGTGATGCTGCTGTCATCTCTGAAAGATGCTATAGTCAGAGTGTCGGTGAAAAATATTGTCTTTTTAAAATTTCGAGTGCCATGCTGTTTGTATGTTTCTTCAGATAGATTTCTTCTGTAATGTAACTGTCAAATGTTTGTCTATATATATGTTTATGTGTGTATGGGCTGGCATCCTAGGCGTGTAAACTTCCTATGACAAAAAAAGG]
[+] EMBL CF306861 [CCCGATCTGCGGGCGCGCGAGCTCGGAGCGTCCTTCCCCGCGCGCGCCGCCGCCACCGCCGAGAGAGTGGCCTCCTCCTCCTCCTCCCTTCCTTCCCGCGTGGCCTGGGCCTGCGGTTACCCCGCGCGCACGGCCGACGACGACTGCGACGGCGACGAAGGCGAGCTGGTTTCGGAGGGGGGCGCGACGCGGCCGACCTGCTCCCCCATCTGGTTCGAATCGAAAGTATCTTTTCAGGTGGATGCCAATCGGTTGGTCGGTTAAAAACAACTAATTTAGCTGATCCTGTGGGGAAGAAGTAATGGTACTGCCAGGCTCTAAGGAGTCTCAAAATTATGATAGCAACAACCAGAAGGTTCATCCTCAACCAATTGACGAAAACATGAATCAGAACATGGGCTCAATGGACACCATGATTGGAAGGATATTCAACAATATATCCTCTTTAAAGTCTGCATACATTCAGCTGCAGGAAGCTCACACCCCATATGACCCAGACAAGATCCAGGCTGCAGATCAGCTTGTCATAGAGGAGCTCACGAAGCTCTCAGAGCTCAAGCATGCTTACAGAGAAAAGAATCCTAAGCCTGTAGCGGCAACACCTCAAGATGCACGGCTGCTTTCTGAAATACAAGAGCAACA ]
[+] EMBL CB621507 [ GCTCAATGGACACCATGATTGGAAGGATATTCAACAATATATCCTCTTTAAAGTCTGCATACATTCAGCTGCAGGAAGCTCACACCCCATATGACCCAGACAAGATCCAGGCTGCAGATCAGCTTGTCATAGAGGAGCTCACGAAGCTCTCAGAGCTCAAGCATGCTTACAGAGAAAAGAATCCTAAGCCTGTAGCGGCAACACCTCAAGATGCACGGCTGCTTTCTGAAATACAAGAGCAACAGAACTTGCTGAAGACATATGAGGTCATGGTAAAGAAGTTCCAGTCCCAGATCCAGACTAGAGATACTGAGATAACACATTTACAGCAGCAAATCGATGAGGCTAAACTTCGGAAATCAAAGCTTGAGAAGAAACTGAAACAAAGGGGCTTACTCAACAAGGAATCTGAGGAATCTGATGATGAAGACAACTACTTTTCCATCGAGTTGACACCAAGTTTATTTACATCTGCTGTTGATAATGCATACCAATCTATACATGATTTTTCAAAGCCTTTGATCAACATGATGAAAGCTGCAGGGTGGGATCTTGATGCTGCTGCTAATGCAATTGAACCTGCTGTGGTTTACACAAGGAGGGCTCACAAAAAGTATGCTTTCGAGTCATATATTTGCCAAAGAATGTTTGGTGGTTTCCAAGAAGAGAGCTTTTCTGTTAAGGCTGCTAACATTACTGTTTCCAATGAGGCTTTCTTCCATCAGTTCCTTGCAGTACGAGCCATGGATCCTTTGGATGTCTTGAGCCAAAATCCTGATTCGGTTTTTGGGAAGTTTTGCAGAAGCAAGTACCTATTACTTG ]
[+] EMBL CB622814 [ GCTCAA GCATACCATGATTGGAAGGATATTCAACAATATATCCTCTTTAAAGTCTGCATACATTCAGCTGCAGGAAGCTCACACCCCATATGACCCAGACAAGATCCAGGCTGCAGATCAGCTTGTCATAGAGGAGCTCACGAAGCTCTCAGAGCTCAAGCATGCTTACAGAGAAAAGAATCCTAAGCCTGTAGCGGCAACACCTCAAGATGCACGGCTGCTTTCTGAAATACAAGAGCAACAGAACTTGCTGAAGACATATGAGGTCATGGTAAAGAAGTTCCAGTCCCAGATCCAGACTAGAGATACTGAGATAACACATTTACAGCAGCAAATCGATGAGGCTAAACTTCGGAAATCAAAGCTTGAGAAGAAACTGAAACAAAGGGGCTTACTCAACAAGGAATCTGAGGAATCTGATGATGAAGACAACTACTTTTCCATCGAGTTGACACCAAGTTTATTTACATCTGCTGTTGATAATGCATACCAATCTATACATGATTTTTCAAAGCCTTTGATCAACATGATGAAAGCTGCAGGGTGGGATCTTGATGCTGCTGCTAATGCAATTGAACCTGCTGTGGTTTACACAAGGAGGGCTCACAAAAAGTATGCTTTCGAGTCATATATTTGCCAAAGAATGTTTGGTGGTTTCCAAGAAGAGAGCTTTTCTGTTAAGGCTGCTAACATTACTGTTTCCAATGAGGCTTTCTTCCATCAGTTCCTTGCAGTACGAGCCATGGATCCTTTGGATGTCTTGAGCCAAAATCCTGATTCGGTTTTTGGG ]
[+] EMBL CB622831 [ GCTCAATGGACACCATGATTGGAAGGATATTCAACAATATATCCTCTTTAAAGTCTGCATACATTCAGCTGCAGGAAGCTCACACCCCATATGACCCAGACAAGATCCAGGCTGCAGATCAGCTTGTCATAGAGGAGCTCACGAAGCTCTCAGAGCTCAAGCATGCTTACAGAGAAAAGAATCCTAAGCCTGTAGCGGCAACACCTCAAGATGCACGGCTGCTTTCTGAAATACAAGAGCAACAGAACTTGCTGAAGACATATGAGGTCATGGTAAAGAAGTTCCAGTCCCAGATCCAGACTAGAGATACTGAGATAACACATTTACAGCAGCAAATCGATGAGGCTAAACTTCGGAAATCAAAGCTTGAGAAGAAACTGAAACAAAGGGGCTTACTCAACAAGGAATCTGAGGAATCTGATGATGAAGACAACTACTTTTCCATCGAGTTGACACCAAGTTTATTTACATCTGCTGTTGATAATGCATACCAATCTATACATGATTTTTCAAAGCCTTTGATCAACATGATGAAAGCTGCAGGGTGGGATCTTGATGCTGCTGCTAATGCAATTGAACCTGCTGTGGTTTACACAAGGAGGGCTCACAAAAAGTATGCTTTCGAGTCATATATTTGCCAAAGAATGTTTGGTGGTTTCCAAGAAGAGAGCTTTTCTGTTAAGGCTGCTAACATTACTGTTTCCAATGAGGCTTTCTTCCATCAGTTCCTTGCAGTACGAGCCATGGATCCTTTGGATGTCTTGAGCCAAAATCCTGATTCGGTTTTTGG ]
[+] EMBL CF336988 [ AGAGAAAAGAATCCTAAGCCTGTAGCGGCAACACCTCAAGATGCACGGCTGCTTTCTGAAATACAAGAGCAACAGAACTTGCTGAAGACATATGAGGTCATGGTAAAGAAGTTCCAGTCCCAAATCCAGACTAGAGATACTGAGATAACACATTTACAGCAGCAAATCGATGAGGCTAAACTTCGGAAATCAAAGCTTGAGAAGAAACTGAAACAAAGGGGCTTACTCAACAAGGAATCTGAGGAATCTGATGATGAAGACAACTACTTTTCCATCGAGTTGACACCAAGTTTATTTACATCTGCTGTTGATAATGCATACCAATCTATACATGATTTTTCAAAGCCTTTGATCAACATG ]
[-] EMBL CB625765 [ TCGAGTCATATA TTGCCAAAGAATGTTTGGTGGTTTCCAAGAAGAGAGCTTTTCTGTTAAGGCTGCTAACATTACTGTTTCCAATGAGGCTTTCTTCCATCAGTTCCTTGCAGTACGAGCCATGGATCCTTTGGATGTCTTGAGCCAAAATCCTGATTCGGTTTTTGGGAAGTTTTGCAGAAGCAAGTACCTATTACTTGTGCACCCAAAAATGGAAGGCTCTTTCTTTGGTAACATGGATCAGAGAAACTATGTAATGAGCGGTGGCCATCCGAGGACACCTTTCTATCAAGCATTTCTGAAGTTAGCGAAGTCGATATGGTTACTGCACAGGCTGGCATACTCCTTTGATCCAAAAGTCAAGGTCTTTCAAGTGAAGAAGGGGAGTGACTTCTCCGAAATTCACATGGAAAGTGTTGTCAAGAACATCATCCTAGATGAAGGTGCAGAGAGGCCTAAAGTTGGCCTAATGGTGATGCCTGGGTTCTTGATTGGGACTAGTGTCATACAAGCTCGGGTGTATCTTTCAGGTGTCAAGTCTGCTGATTGAAGCTGATGCAGTTACTCGAGAAGATCAAGGCTACTTTGCATCTTGCCTGATCAACCAATCACATTAGTACAAGGACGATTAAGGGTCTTGTGTGTGATGCTGCTGTCATCTCTGAAAGATGCTATAGTCAGAGTGTCGGTGAAAAATATTGTCTTTTTAAAATTTCGAGTGCCATGCTGTTTGTATGTTTCTTCAGATAGATTTCTTCTGTAATGTAACTGTCAAATGTTTGTCTATATATATGTTTATGTGTGTATGGGCTGGCATCCTAGGCGTGTAAACTTCCTATGACAAAAAAAGG]
consensusID : consensus_13045#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 508 fasta sequence
[GTTTCTGCACAGGTTGGCATACTCCTTTGATCCAAAAGTCAAGGTCTTTCAAGTGAAGAAGGGGAGTGACTTCTCCGAAATTCACATGGAAAGTGTTGTCAAGAACATCATCCTAGATGAAGGTGCAGAGAGGCCTAAAGTTGGCCTAATGGTGATGCCTGGGTTCTTGATTGGGACTAGTGTCATACAATCTCGGGTGTATCTTTCAGGTGTCAAGTCTGCTGATTGAAGCTGATGCAGTTACTCGAGAAGATCAAGGCTACTTTGCATCTTGCCTGATCAACCAATCCCATTAGTACAAGGACGATTAAGGGTCTTGTGTGTGATGCTGCTGTCATCTCTGAAAGATGCTATAGTCAGAGTGTCGGTGAAAAATATTGTCTTTTTAAAATTTCGAGTGCCATGCTGTTTGTATGTTTCTTCAGATAGATTTCTTCTGTAATGTAACTGTCAAATGTTTGTCTATATATATGTTTATGTGTGTTTTGACTGGCAAAAAAAAAAAAAA]
[-] EMBL CF317529 [GTTTCTGCACAGGTTGGCATACTCCTTTGATCCAAAAGTCAAGGTCTTTCAAGTGAAGAAGGGGAGTGACTTCTCCGAAATTCACATGGAAAGTGTTGTCAAGAACATCATCCTAGATGAAGGTGCAGAGAGGCCTAAAGTTGGCCTAATGGTGATGCCTGGGTTCTTGATTGGGACTAGTGTCATACAATCTCGGGTGTATCTTTCAGGTGTCAAGTCTGCTGATTGAAGCTGATGCAGTTACTCGAGAAGATCAAGGCTACTTTGCATCTTGCCTGATCAACCAATCCCATTAGTACAAGGACGATTAAGGGTCTTGTGTGTGATGCTGCTGTCATCTCTGAAAGATGCTATAGTCAGAGTGTCGGTGAAAAATATTGTCTTTTTAAAATTTCGAGTGCCATGCTGTTTGTATGTTTCTTCAGATAGATTTCTTCTGTAATGTAACTGTCAAATGTTTGTCTATATATATGTTTATGTGTGTTTTGACTGGCAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13045#0 TCCTCCTCTTTCCCCTCTCCTCCCTCTCCACTCCACACGCCGTACTCGCCTCCGTCTTCC 60
consensus_13045#2 ------------------------------------------------------------
consensus_13045#1 ------------------------------------------------------------
consensus_13045#0 CCCCCGATCTGCGGGCGCGCGAGCTCGGAGCGTCCTTCCCCGCGCGCGCCGCCGCCACCG 120
consensus_13045#2 ------------------------------------------------------------
consensus_13045#1 --CCCGATCTGCGGGCGCGCGAGCTCGGAGCGTCCTTCCCCGCGCGCGCCGCCGCCACCG 58
consensus_13045#0 CCGAGAGAGTGGCCTCCTCCTCCTCCTCCCTTCCTTCCCGCGTGGCCTGGGCCTGCGGTT 180
consensus_13045#2 ------------------------------------------------------------
consensus_13045#1 CCGAGAGAGTGGCCTCCTCCTCCTCCTCCCTTCCTTCCCGCGTGGCCTGGGCCTGCGGTT 118
consensus_13045#0 ACCCCGCGCGCACGGCCGACGACGACTGCGACGGCGACGAAGGCGAGCTGGTTTCGGAGG 240
consensus_13045#2 ------------------------------------------------------------
consensus_13045#1 ACCCCGCGCGCACGGCCGACGACGACTGCGACGGCGACGAAGGCGAGCTGGTTTCGGAGG 178
consensus_13045#0 GGGGCGCGACGCGGCCGACCTGCTCCCCCATCTGGTTCGAATCGAAAG-----------G 289
consensus_13045#2 ------------------------------------------------------------
consensus_13045#1 GGGGCGCGACGCGGCCGACCTGCTCCCCCATCTGGTTCGAATCGAAAGTATCTTTTCAGG 238
consensus_13045#0 TGGATGCCAATCGGTTGGTCGGTTAAAAACAACTAATTTAGCTGATCCTGTGGGGAAGAA 349
consensus_13045#2 ------------------------------------------------------------
consensus_13045#1 TGGATGCCAATCGGTTGGTCGGTTAAAAACAACTAATTTAGCTGATCCTGTGGGGAAGAA 298
consensus_13045#0 GTAATGGTACTGCCAGGCTCTAAGGAGTCTCAAAATTATGATAGCAACAACCAGAAGGTT 409
consensus_13045#2 ------------------------------------------------------------
consensus_13045#1 GTAATGGTACTGCCAGGCTCTAAGGAGTCTCAAAATTATGATAGCAACAACCAGAAGGTT 358
consensus_13045#0 CATCCTCAACCAATTGACGAAAACATGAATCAGAAC------------------------ 445
consensus_13045#2 ------------------------------------------------------------
consensus_13045#1 CATCCTCAACCAATTGACGAAAACATGAATCAGAACATGGGCTCAATGGACACCATGATT 418
consensus_13045#0 ------------------------------------------------------------
consensus_13045#2 ------------------------------------------------------------
consensus_13045#1 GGAAGGATATTCAACAATATATCCTCTTTAAAGTCTGCATACATTCAGCTGCAGGAAGCT 478
consensus_13045#0 ------------------------------------------------------------
consensus_13045#2 ------------------------------------------------------------
consensus_13045#1 CACACCCCATATGACCCAGACAAGATCCAGGCTGCAGATCAGCTTGTCATAGAGGAGCTC 538
consensus_13045#0 ------------------------------------------------------------
consensus_13045#2 ------------------------------------------------------------
consensus_13045#1 ACGAAGCTCTCAGAGCTCAAGCATGCTTACAGAGAAAAGAATCCTAAGCCTGTAGCGGCA 598
consensus_13045#0 ------------------------------------------------TTGCTGAAGACA 457
consensus_13045#2 ------------------------------------------------------------
consensus_13045#1 ACACCTCAAGATGCACGGCTGCTTTCTGAAATACAAGAGCAACAGAACTTGCTGAAGACA 658
consensus_13045#0 TATGAGGTCATGGTAAAGAAGTTCCAGTCCCAAATCCAGACTAGAGATACTGAGATAACA 517
consensus_13045#2 ------------------------------------------------------------
consensus_13045#1 TATGAGGTCATGGTAAAGAAGTTCCAGTCCCAGATCCAGACTAGAGATACTGAGATAACA 718
consensus_13045#0 CATTTACAGCAGCAAATCGATGAGGCTAAACTTCGGAAATCAAAGCTTGAGAAGAAACTG 577
consensus_13045#2 ------------------------------------------------------------
consensus_13045#1 CATTTACAGCAGCAAATCGATGAGGCTAAACTTCGGAAATCAAAGCTTGAGAAGAAACTG 778
consensus_13045#0 AAACAAAGGGGCTTACTCAACAAGGAATCTGAGGAATCTGATGATGAAGACAACTACTTT 637
consensus_13045#2 ------------------------------------------------------------
consensus_13045#1 AAACAAAGGGGCTTACTCAACAAGGAATCTGAGGAATCTGATGATGAAGACAACTACTTT 838
consensus_13045#0 TCCATCGAGTTGACACCAAGTTTATTTACATCTGCTGTTGATAATGCATACCAATCTATA 697
consensus_13045#2 ------------------------------------------------------------
consensus_13045#1 TCCATCGAGTTGACACCAAGTTTATTTACATCTGCTGTTGATAATGCATACCAATCTATA 898
consensus_13045#0 CATGATTTTTCAAAGCCTTTGATCAACATGATGAAAGCTGCAGGGTGGGATCTTGATGCT 757
consensus_13045#2 ------------------------------------------------------------
consensus_13045#1 CATGATTTTTCAAAGCCTTTGATCAACATGATGAAAGCTGCAGGGTGGGATCTTGATGCT 958
consensus_13045#0 GCTGCTAATGCAATTGAACCTGCTGTGGTTTACACAAGGAGGGCTCACAAAAAGTATGCT 817
consensus_13045#2 ------------------------------------------------------------
consensus_13045#1 GCTGCTAATGCAATTGAACCTGCTGTGGTTTACACAAGGAGGGCTCACAAAAAGTATGCT 1018
consensus_13045#0 TTCGAGTCATATATTTGCCAAAGAATGTTTGGTGGTTTCCAAGAAGAGAGCTTTTCTGTT 877
consensus_13045#2 ------------------------------------------------------------
consensus_13045#1 TTCGAGTCATATATTTGCCAAAGAATGTTTGGTGGTTTCCAAGAAGAGAGCTTTTCTGTT 1078
consensus_13045#0 AAGGCTGCTAACATTACTGTTTCCAATGAGGCTTTCTTCCATCAGTTCCTTGCAGTACGA 937
consensus_13045#2 ------------------------------------------------------------
consensus_13045#1 AAGGCTGCTAACATTACTGTTTCCAATGAGGCTTTCTTCCATCAGTTCCTTGCAGTACGA 1138
consensus_13045#0 GCCGTGGATCCTTTGGATGTCTTGAGCCAAAATCCTGATTCGGTTTTTGGGAAGTTTTGC 997
consensus_13045#2 ------------------------------------------------------------
consensus_13045#1 GCCATGGATCCTTTGGATGTCTTGAGCCAAAATCCTGATTCGGTTTTTGGGAAGTTTTGC 1198
consensus_13045#0 AGAAGCAAGTACCTATTACTTGTGCACCCAAAAATGGAAGGCTCTTTCTTTGGTAACATG 1057
consensus_13045#2 ------------------------------------------------------------
consensus_13045#1 AGAAGCAAGTACCTATTACTTGTGCACCCAAAAATGGAAGGCTCTTTCTTTGGTAACATG 1258
consensus_13045#0 GATCAGAGAAACTATGTAATGAGCGGTGGCCATCCGAGGACACCTTTCTATCAAGCATTT 1117
consensus_13045#2 ------------------------------------------------------------
consensus_13045#1 GATCAGAGAAACTATGTAATGAGCGGTGGCCATCCGAGGACACCTTTCTATCAAGCATTT 1318
consensus_13045#0 CTGAAGTTAGCGAAGTCGATATGGTTACTGCACAGGCTGGCATACTCCTTTGATCCAAAA 1177
consensus_13045#2 -----------------------GTTTCTGCACAGGTTGGCATACTCCTTTGATCCAAAA 37
consensus_13045#1 CTGAAGTTAGCGAAGTCGATATGGTTACTGCACAGGCTGGCATACTCCTTTGATCCAAAA 1378
*** ********* ***********************
consensus_13045#0 GTCAAGGTCTTTCAAGTGAAGAAGGGGAGTGACTTCTCCGAAATTCACATGGAAAGTGTT 1237
consensus_13045#2 GTCAAGGTCTTTCAAGTGAAGAAGGGGAGTGACTTCTCCGAAATTCACATGGAAAGTGTT 97
consensus_13045#1 GTCAAGGTCTTTCAAGTGAAGAAGGGGAGTGACTTCTCCGAAATTCACATGGAAAGTGTT 1438
************************************************************
consensus_13045#0 GTCAAGAACATCATCCTAGATGAAGGTGCAGAGAGGCCTAAAGTTGGCCTAATGGTGATG 1297
consensus_13045#2 GTCAAGAACATCATCCTAGATGAAGGTGCAGAGAGGCCTAAAGTTGGCCTAATGGTGATG 157
consensus_13045#1 GTCAAGAACATCATCCTAGATGAAGGTGCAGAGAGGCCTAAAGTTGGCCTAATGGTGATG 1498
************************************************************
consensus_13045#0 CCTGGGTTCTTGATTGGGACTAGTGTCATACAAGCTCGGGTGTATCTTTCAGGTGTCAAG 1357
consensus_13045#2 CCTGGGTTCTTGATTGGGACTAGTGTCATACAATCTCGGGTGTATCTTTCAGGTGTCAAG 217
consensus_13045#1 CCTGGGTTCTTGATTGGGACTAGTGTCATACAAGCTCGGGTGTATCTTTCAGGTGTCAAG 1558
********************************* **************************
consensus_13045#0 TCTGCTGATTGAAGCTGATGCAGTTACTCGAGAAGATCAAGGCTACTTTGCATCTTGCCT 1417
consensus_13045#2 TCTGCTGATTGAAGCTGATGCAGTTACTCGAGAAGATCAAGGCTACTTTGCATCTTGCCT 277
consensus_13045#1 TCTGCTGATTGAAGCTGATGCAGTTACTCGAGAAGATCAAGGCTACTTTGCATCTTGCCT 1618
************************************************************
consensus_13045#0 GATCAACCAATCACATTAGTACAAGGACGATTAAGGGTCTTGTGTGTGATGCTGCTGTCA 1477
consensus_13045#2 GATCAACCAATCCCATTAGTACAAGGACGATTAAGGGTCTTGTGTGTGATGCTGCTGTCA 337
consensus_13045#1 GATCAACCAATCACATTAGTACAAGGACGATTAAGGGTCTTGTGTGTGATGCTGCTGTCA 1678
************ ***********************************************
consensus_13045#0 TCTCTGAAAGATGCTATAGTCAGAGTGTCGGTGAAAAATATTGTCTTTTTAAAATTTCGA 1537
consensus_13045#2 TCTCTGAAAGATGCTATAGTCAGAGTGTCGGTGAAAAATATTGTCTTTTTAAAATTTCGA 397
consensus_13045#1 TCTCTGAAAGATGCTATAGTCAGAGTGTCGGTGAAAAATATTGTCTTTTTAAAATTTCGA 1738
************************************************************
consensus_13045#0 GTGCCATGCTGTTTGTATGTTTCTTCAGATAGATTTCTTCTGTAATGTAACTGTCAAATG 1597
consensus_13045#2 GTGCCATGCTGTTTGTATGTTTCTTCAGATAGATTTCTTCTGTAATGTAACTGTCAAATG 457
consensus_13045#1 GTGCCATGCTGTTTGTATGTTTCTTCAGATAGATTTCTTCTGTAATGTAACTGTCAAATG 1798
************************************************************
consensus_13045#0 TTTGTCTATATATATGTTTATGTGTGTTTTGACTGGCATCCTAGGCGTGTAAACTTCCTA 1657
consensus_13045#2 TTTGTCTATATATATGTTTATGTGTGTTTTGACTGGCAAAAAAAAAAAAAA--------- 508
consensus_13045#1 TTTGTCTATATATATGTTTATGTGTGTATGGGCTGGCATCCTAGGCGTGTAAACTTCCTA 1858
*************************** * * ****** * *
consensus_13045#0 TGATGCTCCTTTGCAAAATTTGTAATTCACGGCTATTCACCAGAATGTAGTATGCTCTGG 1717
consensus_13045#2 ------------------------------------------------------------
consensus_13045#1 TGACAAAAAAAGG----------------------------------------------- 1871
consensus_13045#0 AAACTAGTGTGTCCATGCTTTGCACAATCAGGCTCATATAATTGGGGATTGGTTGGGGTA 1777
consensus_13045#2 ------------------------------------------------------------
consensus_13045#1 ------------------------------------------------------------
consensus_13045#0 TATTGAGGATAGAACACACTGGGAAGAGGATGGATGCGCTTTTGATGTAGAGATGGTGCA 1837
consensus_13045#2 ------------------------------------------------------------
consensus_13045#1 ------------------------------------------------------------
consensus_13045#0 GTCAAAATTTGATACCAATAATATGAAGGGTATCTAAAAAAAAAAAAAAAAGA 1890
consensus_13045#2 -----------------------------------------------------
consensus_13045#1 -----------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||