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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13126#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1517 fasta sequence
[ATCCCCGATCCGTTCTCTCCCTCTTTCCTCCTTCCTCACCGTCGCTGCCGTCCTCCCCGGCACTCCCATCCCTTTCTCCTCCATGCCGCACCCCTCCCCATCGTCGCAGCCGCCCCGTCGCCCCTGCTCGCCTGCATCCACCACACCGCCTCCCTCCCCAGTCGAGACGGCGTTGCCTCCTCGCCCCCTCCGCAGCCAGATTGACACCGCGCCGTTCAATCCACCGCCTCAAGCACCATGCATCGTCGTCGTTGCAGGCGTCGGCACGGGCGCGGGCGCTGCCGATCCCGAGTCGAGACGACGTCGTCCGCTGCTGCTTCTCCACCACTGACGGTTGCCCTGCGTATATCCTCCCTATTATCGCGGTCCCCATCTGCTCCTGAATCCTGATCCACAAAAACAGCGGAGCGCCGTCGGCCTCTCTGCCTCCCTGCGACCACCAGTGGCATCTGCCCCGCCGTCGGCTCTTCCTCACCCGCGACTCGCCGACGATGGTGCTCCACAAACCATTCAGGCCGTCACTGGTCT-CCGGAGCGCCCGAGGCCGACGTGTCTCGCACTCCCTATAATCTTGCTTTGCTGCATCAGTAACAACATCATAACATATCGTGGTTCATACAATGGATCAGGCTGGTAATTCGATTCCAATTCTTGCTCCTGAACTTTTTTATTGGTGATTCCCTCTAATGTTCAGCAGATTGGGTTTGGTGGTGGCAGTGCCGCACCACTGATTTGTGTTAGACATTGGTCCTTATCCAACCCTCTAATCTCTTGATTATGCTCACTTACGATGACTTCAGCTCAGGTGGTTGCAAGAAACACTCCTAGACTGCTATTTAGTTTTACGTTACAGGGATTTGGCTACAGATAGTTGCAAGCTGCAATGTTCTGATATTTGTTATGTTTTAGAGCAAGATCTGCCTTATATATAATGTTATAATTAGGCTTCGAATTTCTTGCTTATGTTCTTTAAAAATTCCA-AGTAACCTTTTCAGTTCTTTCTGTCAGGTTAATTGACAGATCGAGTTGCACTTACACATATCTTGTTTTAGGAAATGCTCCAATGGCCCTTGAATCCAGCAAAATTGGTAGTTCCTCTCGTCCTCCAGGCACCAGCTATAGACAATATCTATACCTCAAGGAAGCCTCTTCATGTTCCCCTCAATATTTCTTTCTGGGTGCATGCACTCTATGCTTGCTATGCAAAACCCAATGTATGTGAATGTGATCCTTATGCTGCAAAGGTGCTACTATAAACACTTCGTTCTTTTATCTATTTATTTAAACATTCTTTGTTGGTGTCGGTGCATTGCCTCTGAATTTTAGATCTTTTTTAGTGCAAAATGCATATGAATGTGTGGCATTGATATTCCCTTGGAGATGAAACAAGGTATTCAGTGTTTGCAAATTAACATTTACGAGTAGGATTTACCTAGCTAGCATGGCCTCTTTCATAGCCACTTTTGCATGTATGAATCTTTGTAAATTGTGGTCCTATAGGCAAATAGAAAGGTAAAA]
[+] EMBL AK101468 [ATCCCCGATCCGTTCTCTCCCTCTTTCCTCCTTCCTCACCGTCGCTGCCGTCCTCCCCGGCACTCCCATCCCTTTCTCCTCCATGCCGCACCCCTCCCCATCGTCGCAGCCGCCCCGTCGCCCCTGCTCGCCTGCATCCACCACACCGCCTCCCTCCCCAGTCGAGACGGCGTTGCCTCCTCGCCCCCTCCGCAGCCAGATTGACACCGCGCCGTTCAATCCACCGCCTCAAGCACCATGCATCGTCGTCGTTGCAGGCGTCGGCACGGGCGCGGGCGCTGCCGATCCCGAGTCGAGACGACGTCGTCCGCTGCTGCTTCTCCACCACTGACGGTTGCCCTGCGTATATCCTCCCTATTATCGCGGTCCCCATCTGCTCCTGAATCCTGATCCACAAAAACAGCGGAGCGCCGTCGGCCTCTCTGCCTCCCTGCGACCACCAGTGGCATCTGCCCCGCCGTCGGCTCTTCCTCACCCGCGACTCGCCGACGATGGTGCTCCACAAACCATTCAGGCCGTCACTGGTCT CCGGAGCGCCCGAGGCCGACGTGTCTCGCACTCCCTATAATCTTGCTTTGCTGCATCAGTAACAACATCATAACATATCGTGGTTCATACAATGGATCAGGCTGGTAATTCGATTCCAATTCTTGCTCCTGAACTTTTTTATTGGTGATTCCCTCTAATGTTCAGCAGATTGGGTTTGGTGGTGGCAGTGCCGCACCACTGATTTGTGTTAGACATTGGTCCTTATCCAACCCTCTAATCTCTTGATTATGCTCACTTACGATGACTTCAGCTCAGGTGGTTGCAAGAAACACTCCTAGACTGCTATTTAGTTTTACGTTACAGGGATTTGGCTACAGATAGTTGCAAGCTGCAATGTTCTGATATTTGTTATGTTTTAGAGCAAGATCTGCCTTATATATAATGTTATAATTAGGCTTCGAATTTCTTGCTTATGTTCTTTAAAAATTCCA AGTAACCTTTTCAGTTCTTTCTGTCAGGTTAATTGACAGATCGAGTTGCACTTACACATATCTTGTTTTAGGAAATGCTCCAATGGCCCTTGAATCCAGCAAAATTGGTAGTTCCTCTCGTCCTCCAGGCACCAGCTATAGACAATATCTATACCTCAAGGAAGCCTCTTCATGTTCCCCTCAATATTTCTTTCTGGGTGCATGCACTCTATGCTTGCTATGCAAAACCCAATGTATGTGAATGTGATCCTTATGCTGCAAAGGTGCTACTATAAACACTTCGTTCTTTTATCTATTTATTTAAACATTCTTTGTTGGTGTCGGTGCATTGCCTCTGAATTTTAGATCTTTTTTAGTGCAAAATGCATATGAATGTGTGGCATTGATATTCCCTTGGAGATGAAACAAGGTATTCAGTGTTTGCAAATTAACATTTACGAGTAGGATTTACCTAGCTAGCATGGCCTCTTTCATAGCCACTTTTGCATGTATGAATCTTTGTAAATTGTGGTCCTATAGGCAAATAGAAAGGTAAAA]
[+] EMBL CA754017 [ CCCCCTTTCCTCCTTCCCCACCGTCGCTGCCGTCCTCCCCGGCACTCCCATCCCTTTCTCCTCCATGCCGCACCCCTCCCCATCGTCGCAGCCGCCCCGTCGCCCCTGCTCGCCTGCATCCACCACACCGCCTCCCTCCCCAGTCGAGACGGTGTCGCCTCCTCGCCCCCTCCGCAGCTAGATTGACACTGCGCCATTCAATCCACCGCCTCAAGCACCATGCATCGTCGTCGTTGCAGGCGTCGGCACGGGCGCGGGCACTGCCGATCCCGAGTCGAGACGACGTCGTCCGCTGCTGCTTCTCCACCACTGACGGTTGCCCTGCGTATATCCTCCCTATTATCGCGGTCCCCATCTGCTCCTGAATCCTGATCCACAAAAACAGCGGAGCGCCGTCGGCCTCTCTGCCTCCCTGCGACCACCAGTGGCATCTGCCCCGCCGTCGGCTCTCCCTCACCCGCGACTCGCCGAC ATGGTGCTCCACAAACCATTCAGGCCGTCACTGGTCT CCGGAGCGCCCGAGGCCGACGTGTCTCGCACTCCCTATAATCTTGCTTTGCTGCAGCAGTAACAACATCATAACATATCGTGGTTCATACAATGGAT ]
[+] EMBL CB672133 [ GTCCTCCCCGGCACTCCCATCCCTTTCTCCTCCATGCCGCACCCCTCCCCATCGTCGCAGCCGCCCCGTCGCCCCTGCTCGCCTGCATCCACCACACCGCCTCCCTCCCCAGTCGAGACGGTGTCGCCTCCTCGCCCCCTCCGCAGCTAGATTGACACTGCGCCATTCAATCCACCGCCTCAAGCACCATGCATCGTCGTCGTTGCAGGCGTCGGCACGGGCGCGGGCACTGCCGATCCCGAGTCGAGACGACGTCGGCCGCTGCTGCTTCTCCACCACTGACGGTTGCCCTGCGTATATCCTCCCTATTATCGCGGTCCCCATCTGCTCCTGAATCCTGATCCACAAAAACAGCGGAGCGCCGTCGGCCTCTCTGCCTCGCTGCGACCACCAGTGGCATCTGCCCCGCCGTCGGCTCTCCCTCACCCGCGACTCGCCGAC ATGGTGCTCCACAAACCATTCAGGCCGTCACTGGTCTCCCGGAGCGCCCGAGGCCGACGTGTCTCGCACTCCCTATAATCTTGCTTTGCTGCAGCAGTAACAACATCATAACATATCGTGGTTCATACAATGGATCAGGCTGGTAATTCGATTC ]
[+] EMBL CB666327 [ TCCATGCCGCACCCCTCCCCATCGTCGCAGCCGCCCCGTCGCCCCTGCTCGCCTGCATCCACCACACCGCCTCCCTCCCCAGTCGAGACGGCGTTGCCTCCTCGCCCCCTCCGCAGCCAGATTGACACCGCGCCGTTCAATCCACCGCCTCAAGCACCATGCATCGTCGTCGTTGCAGGCGTCGGCACGGGCGCGGGCGCTGCCGATCCCGAGTCGAGACGACGTCGTCCGCTGCTGCTTCTCCACCACTGACGGTTGCCCTGCGTATATCCTCCCTATTATCGCGGTCCCCATCTGCTCCTGAATCCTGATCCACAAAAACAGCGGAGCGCCGTCGGCCTCTCTGCCTCCCTGCGACCACCAGTGGCATCTGCCCCGCCGTCGGCTCTTCCTCACCCGCGACTCGCCGACGATGGTGCTCCACAAACCATTCAGGCCGTCACTGGTCT CCGGAGCGCCCGAGGCCGACGTGTCTCGCACTCCCTATAATCTTGCTTTGCTGCATCAGTAACAACATCATAACATATCGTGGTTCATACAATGGATCAGGCTGGTAATTCGATTCCAATTCTTGCTCCTGAACTTTTTTATTGGTGATTCCCTCTAATGTTCAGCAGATTGGGTTTGGTGGTGGCAGTGCCGCACCACTGATTTGTGTTAGACATTGGTCCTTATCCAACCCTCTAATCTCTTGATTATGCTCACTTACGATGACTTCAGCTCAGGTGGTTGCAAGAAACACTCCTAGACTGCTATTTAGTTTTACGTTACAGGGATTTGGCTACAGATAGTTGCAAGCTGCA ]
[+] EMBL CB681325 [ TATCGCCCTCCCCATCTGTTCCTGAATCCTGATCCACAAAAACAGCGGAGCGCCGTCGGCCTCTCTGCCTCCCTGCGACCACCAGTGGCATCTGCCCCGCCGTCGGCTCTTCCTCACCCGCGACTCGCCGACGATGGTGCTCCACAAACCATTCAAGCCGTCACTGGTCT CCGGAGCGCCCGAGGCCGACGTGTCTCGCACTCCCTATAATCTTGCTTTGCTGCATCATTAACAACATCATAACATATCGTGGTTCATACAATGGATCAGGCTGGTAATTCGATTCCAATTCTTGCTCCTGAACTTTTTTATTGGTGATTCCCTCTAATGTTCAGCAGATTGGGTTTGGTGGTGGCAGTGCCGCACCACTGATTTGTGTTAGACATTGGTCCTTATCCAACCCTCTAATCTCTTGATTATGCTCACTTACGATGACTTCAGCTCAAGTGGTTGCAAGAAACACTCCTAGACTGCTATTTAGTTTTACGTTACAGGGATTTGGCTACAGATAGATGCAAGCTGCAATGATCTGATATTTGGTATGTTTTAGAGCAAGATCTGCCTTATATATAATGCTATAATTATGCTTCGAATTTCTTGCTTATGTTCTTTAAAAATTCCA AGGAACCTTTTCAGGTCTTTCTGTCACGTTAATTGACAGATCGAGATGCACTTACACATATCTTGTTTTACGAAA ]
[+] EMBL CB663377 [ GCCCGAGGCCGACGTGTCTCGCACTCCCTATAATCTTGCTTTGCTGCATCAGTAACAACATCATAACATATCGTGGTTCATACAATGGATCAGGCTGGTAATTCGATTCCAATTCTTGCTCCTGAACTTTTTTATTGGTGATTCCCTCTAATGTTCAGCAGATTGGGTTTGGTGGTGGCAGTGCCGCACCACTGATTTGTGTTAGACATTGGTCCTTATCCAACCCTCTAATCTCTTGATTATGCTCACTTACGATGACTTCAGCTCAGGTGGTTGCAAGAAACACTCCTAGACTGCTATTTAGTTTTACGTTACAGGGATTTGGCTACAGATAGTTGCAAGCTGCAATGTTCTGATATTTGTTATGTTTTAGAGCAAGATCTGCCTTATATATAATGTTATAATTAGGCTTCGAATTTCTTGCTTATGTTCTTTAAAAATTCCA AGTAACCTTTTCAGTTCTTTCTGTCAGGTTAATTGACAGATCGAGTTGCACTTACACATATCTTGTTTTAGGAAATGCTCCAATGGCCCTTGAATCCAGCAAAATTGGTAGTTCCTCTCGTCCTCCAGGCACCAGCTATAGACAATATCTATACCTCAAGGAAGCCTCTTCATGTTCCCCTCAATATTTCTTTCTGGGTGCATGCACTCTATGCTTGCTATGCAAAACCCAATGTATGTGAATGTGATCCTTATGCTGCAAAGGTGCTACTATAAACACTTCGTTCTTTTATCTATTTATTTAAACATTCTTTGTTGGTGTCGGTGCATTGCCTCTGAATTTTAGATCTTTTTTAGTGC ]
[+] EMBL BI811864 [ ACTCCTAGACTGCTATTTATTTTTACGTTACAGGGATTT GCTACAGATA TTGCAAGCTGCAATGTTCTGATATTTGTTATGTTTTAGACCAA ATCTGCCTTATATATAATGTTATAATTAGGCTTCGAATTTCTTGCTTATGTTCTTTAAAAATTCCACAGTAACCTTTTCAGTTCTTTATGTCAGGTTAATTGACAGATCGAGTTGCACTTACACATATCTTGTTTTAGGAAATGCTCCAATGGCCCTTGAATCCAGC AAATTGGTAGTTCCTCTCGTCCTCCAGGCACCAGCTATGGACAATATCTATACCTCAAGGAAGCCTCTTCATGTTCCCCTCAATATTTCTTTCTGGGTGCATGCACTCTATGCTTGCTATGCAAAACCC ATGTATGTGAATGTGATCCTTATGCTGC AAGGTGCTACTATAAACACTTCGTT TTTTATCTATTTATTTAAACAaaaaaaaaa ]
consensusID : consensus_13126#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 805 fasta sequence
[TGCGCCACCACTGATTTGTGTTAGACATTGGTCCTTATCCAACCCTCTAATCTCTTGATTATGCTCACTTACGATGACTTCAGCTCAGGTGGTTGCAAGAAACACTCCTAGACTGCTATTTAGTTTTACGTTACAGGGATTTGGCTACAGATAGTTGCAAGCTGCAATGTTCTGATATTTGTTATGTTTTAGAGCAAGATCTGCCTTATATATAATGATATAATTAGGCTTCGAATTTCTTGCTTATGTTCTTTAAAAATTCCAAGTAACCTTTTCAGTTCTTTATGTCAGGTTAATTGACAGATCGAGTTGCACTTACACATATCTTGTTTTAGGAAATGCTCCAATGGCCCTTGAATCCAGCAAAATTGGTAGTTCCTCTCGTCCTCCAGGCACCAGCTATGGACAATATCTATACCTCAAGGAAGCCTCTTCATGTTCCCCTCAATATTTCTTTCTGGGTGCATGCACTCTATGCTTGCTATGCAAAACCCAATGTATGTGAATGTGATCCTTATGCTGCAAAGCTTAACCATCTCAATAAAGCTGATGAAGACAAGGTGCTCGATATTCAGACGATATTGGTCAAGTATAACATATTTCATATTGACCAGTGAGAAGCATCCAGAAGAAGTAAACGAATGAGCATTGAGTTCCAGAAAATGGTGTATAGTATAGATGGAATTATGAAAAGCAATCACCCTCATGTTTTATGTATAGTTTTTATTATTTTGTGAAAGGATGGTAGTGTCAATATGTAGAGGTTTTATTAATTTGTGAAAGGATGGTAGTGTCAATAAAAAGA]
[-] EMBL CB672134 [TGCGCCACCACTGATTTGTGTTAGACATTGGTCCTTATCCAACCCTCTAATCTCTTGATTATGCTCACTTACGATGACTTCAGCTCAGGTGGTTGCAAGAAACACTCCTAGACTGCTATTTAGTTTTACGTTACAGGGATTTGGCTACAGATAGTTGCAAGCTGCAATGTTCTGATATTTGTTATGTTTTAGAGCAAGATCTGCCTTATATATAATGATATAATTAGGCTTCGAATTTCTTGCTTATGTTCTTTAAAAATTCCAAGTAACCTTTTCAGTTCTTTATGTCAGGTTAATTGACAGATCGAGTTGCACTTACACATATCTTGTTTTAGGAAATGCTCCAATGGCCCTTGAATCCAGCAAAATTGGTAGTTCCTCTCGTCCTCCAGGCACCAGCTATGGACAATATCTATACCTCAAGGAAGCCTCTTCATGTTCCCCTCAATATTTCTTTCTGGGTGCATGCACTCTATGCTTGCTATGCAAAACCCAATGTATGTGAATGTGATCCTTATGCTGCAAAGCTTAACCATCTCAATAAAGCTGATGAAGACAAGGTGCTCGATATTCAGACGATATTGGTCAAGTATAACATATTTCATATTGACCAGTGAGAAGCATCCAGAAGAAGTAAACGAATGAGCATTGAGTTCCAGAAAATGGTGTATAGTATAGATGGAATTATGAAAAGCAATCACCCTCATGTTTTATGTATAGTTTTTATTATTTTGTGAAAGGATGGTAGTGTCAATATGTAGAGGTTTTATTAATTTGTGAAAGGATGGTAGTGTCAATAAAAAGA]
consensusID : consensus_13126#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 771 fasta sequence
[TGTCTCGCACTCCCTATAATCTTGCTTTGCTGCATCAGTAACAACATCATAACATATCGTGGTTCATACAATGGATCAGGCTGGTAATTCGATTCCAATTCTTGCTCCTGAACTTTTTTATTGGTGATTCCCTCTAATGTTCAGCAGATTGGGTTTGGTGGTGGCAGTGCCGCACCACTGATTTGTGTTAGACATTGGTCCTTATCCAACCCTCTAATCTCTTGATTATGCTCACTTACGATGACTTCAGCTCAGGTGGTTGCAAGAAACACTCCTAGACTGCTATTTAGTTTTACGTTACAGGGATTTGGCTACAGATAGTTGCAAGCTGCAATGTTCTGATATTTGTTATGTTTTAGAGCAAGATCTGCCTTATATATAATGTTATAATTAGGCTTCGAATTTCTTGCTTATGTTCTTTAAAAATTCCAAGTAACCTTTTCAGTTCTTTCTGTCAGGTTAATTGACAGATCGAGTTGCACTTACACATATCTTGTTTTAGGAAATGCTCCAATGGCCCTTGAATCCAGCAAAATTGGTAGTTCCTCTCGTCCTCCAGGCACCAGCTATAGACAATATCTATACCTCAAGGAAGCCTCTTCATGTTCCCCTCAATATTTCTTTCTGGGTGCATGCACTCTATGCTTGCTATGCAAAACCCAATGTATGTGAATGTGATCCTTATGCTGCAAAGGTGCTACTATAAACACTTCGTTCTTTTATCTAAGGATTTAAACATTCTTTGTTGGTGTCGGTGCAAACAAAAAAAGA]
[-] EMBL CB681326 [TGTCTCGCACTCCCTATAATCTTGCTTTGCTGCATCAGTAACAACATCATAACATATCGTGGTTCATACAATGGATCAGGCTGGTAATTCGATTCCAATTCTTGCTCCTGAACTTTTTTATTGGTGATTCCCTCTAATGTTCAGCAGATTGGGTTTGGTGGTGGCAGTGCCGCACCACTGATTTGTGTTAGACATTGGTCCTTATCCAACCCTCTAATCTCTTGATTATGCTCACTTACGATGACTTCAGCTCAGGTGGTTGCAAGAAACACTCCTAGACTGCTATTTAGTTTTACGTTACAGGGATTTGGCTACAGATAGTTGCAAGCTGCAATGTTCTGATATTTGTTATGTTTTAGAGCAAGATCTGCCTTATATATAATGTTATAATTAGGCTTCGAATTTCTTGCTTATGTTCTTTAAAAATTCCAAGTAACCTTTTCAGTTCTTTCTGTCAGGTTAATTGACAGATCGAGTTGCACTTACACATATCTTGTTTTAGGAAATGCTCCAATGGCCCTTGAATCCAGCAAAATTGGTAGTTCCTCTCGTCCTCCAGGCACCAGCTATAGACAATATCTATACCTCAAGGAAGCCTCTTCATGTTCCCCTCAATATTTCTTTCTGGGTGCATGCACTCTATGCTTGCTATGCAAAACCCAATGTATGTGAATGTGATCCTTATGCTGCAAAGGTGCTACTATAAACACTTCGTTCTTTTATCTAAGGATTTAAACATTCTTTGTTGGTGTCGGTGCAAACAAAAAAAGA]
[-] EMBL CB681382 [ AATCTTGCTTTGCTGCATCAGTAACAACATCATAACATATCGTGGTTCATACAATGGATCAGGCTGGTAATTCGATTCCAATTCTTGCTCCTGAACTTTTTTATTGGTGATTCCCTCTAATGTTCAGCAGATTGGGTTTGGTGGTGGCAGTGCCGCACCACTGATTTGTGTTAGACATTGGTCCTTATCCAACCCTCTAATCTCTTGATTATGCTCACTTACGATGACTTCAGCTCAGGTGGTTGCAAGAAACACTCCTAGACTGCTATTTAGTTTTACGTTACAGGGATTTGGCTACAGATAGTTGCAAGCTGCAATGTTCTGATATTTGTTATGTTTTAGAGCAAGATCTGCCTTATATATAATGTTATAATTAGGCTTCGAATTTCTTGCTTATGTTCTTTAAAAATTCCAAGTAACCTTTTCAGTTCTTTCTGTCAGGTTAATTGACAGATCGAGTTGCACTTACACATATCTTGTTTTAGGAAATGCTCCAATGGCCCTTGAATCCAGCAAAATTGGTAGTTCCTCTCGTCCTCCAGGCACCAGCTATAGACAATATCTATACCTCAAGGAAGCCTCTTCATGTTCCCCTCAATATTTCTTTCTGGGTGCATGCACTCTATGCTTGCTATGCAAAACCCAATGTATGTGAATGTGATCCTTATGCTGCAAAGGTGCTACTATAAACACTTCGTTCTTTTATCTATTGATTTAAACATTCTTTGTTGGTGTCGGTGCAAAAAAAAAAAGA]
consensusID : consensus_13126#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 770 fasta sequence
[CCCTGAACTTTTTTATTGGTGATTCCCTCTAATGTTCAGCAGATTGGGTTTGGTGGTGGCAGTGCCGCACCACTGATTTGTGTTAGACATTGGTCCTTATCCAACCCTCTAATCTCTTGATTATGCTCACTTACGATGACTTCAGCTCAGGTGGTTGCAAGAAACACTCCTAGACTGCTATTTAGTTTTACGTTACAGGGATTTGGCTACAGATAGTTGCAAGCTGCAATGTTCTGATATTTGTTATGTTTTAGAGCAAGATCTGCCTTATATATAATGTTATAATTAGGCTTCGAATTTCTTGCTTATGTTCTTTAAAAATTCCAAGTAACCTTTTCAGTTCTTTCTGTCAGGTTAATTGACAGATCGAGTTGCACTTACACATATCTTGTTTTAGGAAATGCTCCAATGGCCCTTGAATCCAGCAAAATTGGTAGTTCCTCTCGTCCTCCAGGCACCAGCTATAGACAATATCTATACCTCAAGGAAGCCTCTTCATGTTCCCCTCAATATTTCTTTCTGGGTGCATGCACTCTATGCTTGCTATGCAAAACCCAATGTATGTGAATGTGATCCTTATGCTGCAAAGCTGATGAAGACAAGGTGCTCGATATTCAGACGATATTGGTCAAGTATAACATATTTCATATTGACCAGTGAGAAGCATCCGGAAGAAGTAAACGAATGAGCATTGAGTTCCAGAAAATGGTGTATAGTATAGATGGAATTATGAAAAGCAATCAACCTGCATGTTTTATGTATAGTTTTTA]
[-] EMBL CB666328 [CCCTGAACTTTTTTATTGGTGATTCCCTCTAATGTTCAGCAGATTGGGTTTGGTGGTGGCAGTGCCGCACCACTGATTTGTGTTAGACATTGGTCCTTATCCAACCCTCTAATCTCTTGATTATGCTCACTTACGATGACTTCAGCTCAGGTGGTTGCAAGAAACACTCCTAGACTGCTATTTAGTTTTACGTTACAGGGATTTGGCTACAGATAGTTGCAAGCTGCAATGTTCTGATATTTGTTATGTTTTAGAGCAAGATCTGCCTTATATATAATGTTATAATTAGGCTTCGAATTTCTTGCTTATGTTCTTTAAAAATTCCAAGTAACCTTTTCAGTTCTTTCTGTCAGGTTAATTGACAGATCGAGTTGCACTTACACATATCTTGTTTTAGGAAATGCTCCAATGGCCCTTGAATCCAGCAAAATTGGTAGTTCCTCTCGTCCTCCAGGCACCAGCTATAGACAATATCTATACCTCAAGGAAGCCTCTTCATGTTCCCCTCAATATTTCTTTCTGGGTGCATGCACTCTATGCTTGCTATGCAAAACCCAATGTATGTGAATGTGATCCTTATGCTGCAAAGCTGATGAAGACAAGGTGCTCGATATTCAGACGATATTGGTCAAGTATAACATATTTCATATTGACCAGTGAGAAGCATCCGGAAGAAGTAAACGAATGAGCATTGAGTTCCAGAAAATGGTGTATAGTATAGATGGAATTATGAAAAGCAATCAACCTGCATGTTTTATGTATAGTTTTTA]
consensusID : consensus_13126#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 579 fasta sequence
[AATACTTGTAGTTTTGAATTTGATAATCTGATCGAAAAAATAGTTAACCCCAAAATCCTTTCCCAAAACCATGAGCTAAACGATTACTCTTGCTAACTCCAACTATACAATACCCCTTTTTCTGGAACTAAATATTGACACTACCATCCTTTCACAAATTAATAAAAACTCTACGTATTGACCCTACCATCCTTTCCCAAAATAATAAAAACTATACATAAAACTGGGGGGGGATTGCTTTTCATAATTCCATCTAAACTAAACCCCATTTTCGGGAACTCAAGGCTCATTCGTTTACTTCTTCCGGAGGCTTCTCACGGGTCAAAATGAAATATGTTATACTTGACCAATATCGTCTGAATATCGAGCACCTTGTCTTCATCAGCTTTATTGAGAGGGTTAAGCTAGCAGCCAGCAGGGAATTCTCAGATAAAACAACAATTAAAAGCTAAACCCCAATAAAAAATCAAAAAGTTCTATACTACTTCATACTTCAAAAGGAATTAAAAAAACTTCAAATTTTCAACCACCAAGCTTAATGCTGACTTGAATGACAAAAAAGGGATATCCTCTTTAAAA]
[+] EMBL CB663378 [AATACTTGTAGTTTTGAATTTGATAATCTGATCGAAAAAATAGTTAACCCCAAAATCCTTTCCCAAAACCATGAGCTAAACGATTACTCTTGCTAACTCCAACTATACAATACCCCTTTTTCTGGAACTAAATATTGACACTACCATCCTTTCACAAATTAATAAAAACTCTACGTATTGACCCTACCATCCTTTCCCAAAATAATAAAAACTATACATAAAACTGGGGGGGGATTGCTTTTCATAATTCCATCTAAACTAAACCCCATTTTCGGGAACTCAAGGCTCATTCGTTTACTTCTTCCGGAGGCTTCTCACGGGTCAAAATGAAATATGTTATACTTGACCAATATCGTCTGAATATCGAGCACCTTGTCTTCATCAGCTTTATTGAGAGGGTTAAGCTAGCAGCCAGCAGGGAATTCTCAGATAAAACAACAATTAAAAGCTAAACCCCAATAAAAAATCAAAAAGTTCTATACTACTTCATACTTCAAAAGGAATTAAAAAAACTTCAAATTTTCAACCACCAAGCTTAATGCTGACTTGAATGACAAAAAAGGGATATCCTCTTTAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13126#0 ATCCCCGATCCGTTCTCTCCCTCTTTCCTCCTTCCTCACCGTCGCTGCCGTCCTCCCCGG 60
consensus_13126#2 ------------------------------------------------------------
consensus_13126#1 ------------------------------------------------------------
consensus_13126#3 ------------------------------------------------------------
consensus_13126#4 ------------------------------------------------------------
consensus_13126#0 CACTCCCATCCCTTTCTCCTCCATGCCGCACCCCTCCCCATCGTCGCAGCCGCCCCGTCG 120
consensus_13126#2 ------------------------------------------------------------
consensus_13126#1 ------------------------------------------------------------
consensus_13126#3 ------------------------------------------------------------
consensus_13126#4 ------------------------------------------------------------
consensus_13126#0 CCCCTGCTCGCCTGCATCCACCACACCGCCTCCCTCCCCAGTCGAGACGGCGTTGCCTCC 180
consensus_13126#2 ------------------------------------------------------------
consensus_13126#1 ------------------------------------------------------------
consensus_13126#3 ------------------------------------------------------------
consensus_13126#4 ------------------------------------------------------------
consensus_13126#0 TCGCCCCCTCCGCAGCCAGATTGACACCGCGCCGTTCAATCCACCGCCTCAAGCACCATG 240
consensus_13126#2 ------------------------------------------------------------
consensus_13126#1 ------------------------------------------------------------
consensus_13126#3 ------------------------------------------------------------
consensus_13126#4 ------------------------------------------------------------
consensus_13126#0 CATCGTCGTCGTTGCAGGCGTCGGCACGGGCGCGGGCGCTGCCGATCCCGAGTCGAGACG 300
consensus_13126#2 ------------------------------------------------------------
consensus_13126#1 ------------------------------------------------------------
consensus_13126#3 ------------------------------------------------------------
consensus_13126#4 ------------------------------------------------------------
consensus_13126#0 ACGTCGTCCGCTGCTGCTTCTCCACCACTGACGGTTGCCCTGCGTATATCCTCCCTATTA 360
consensus_13126#2 ------------------------------------------------------------
consensus_13126#1 ------------------------------------------------------------
consensus_13126#3 ------------------------------------------------------------
consensus_13126#4 ------------------------------------------------------------
consensus_13126#0 TCGCGGTCCCCATCTGCTCCTGAATCCTGATCCACAAAAACAGCGGAGCGCCGTCGGCCT 420
consensus_13126#2 ------------------------------------------------------------
consensus_13126#1 ------------------------------------------------------------
consensus_13126#3 ------------------------------------------------------------
consensus_13126#4 ------------------------------------------------------------
consensus_13126#0 CTCTGCCTCCCTGCGACCACCAGTGGCATCTGCCCCGCCGTCGGCTCTTCCTCACCCGCG 480
consensus_13126#2 ------------------------------------------------------------
consensus_13126#1 ------------------------------------------------------------
consensus_13126#3 ------------------------------------------------------------
consensus_13126#4 ------------------------------------------------------------
consensus_13126#0 ACTCGCCGACGATGGTGCTCCACAAACCATTCAGGCCGTCACTGGTCTCCGGAGCGCCCG 540
consensus_13126#2 ------------------------------------------------------------
consensus_13126#1 ------------------------------------------------------------
consensus_13126#3 ------------------------------------------------------------
consensus_13126#4 ------------------------------------------------------------
consensus_13126#0 AGGCCGACGTGTCTCGCACTCCCTATAATCTTGCTTTGCTGCATCAGTAACAACATCATA 600
consensus_13126#2 ---------TGTCTCGCACTCCCTATAATCTTGCTTTGCTGCATCAGTAACAACATCATA 51
consensus_13126#1 ------------------------------------------------------------
consensus_13126#3 ------------------------------------------------------------
consensus_13126#4 ------------------------------------------------------------
consensus_13126#0 ACATATCGTGGTTCATACAATGGATCAGGCTGGTAATTCGATTCCAATTCTTGCTCCTGA 660
consensus_13126#2 ACATATCGTGGTTCATACAATGGATCAGGCTGGTAATTCGATTCCAATTCTTGCTCCTGA 111
consensus_13126#1 ------------------------------------------------------------
consensus_13126#3 ------------------------------------------------------CCCTGA 6
consensus_13126#4 ------------------------------------------------------------
consensus_13126#0 ACTTTTTTATTGGTGATTCCCTCTAATGTTCAGCAGATTGGGTTTGGTGGTGGCAGTGCC 720
consensus_13126#2 ACTTTTTTATTGGTGATTCCCTCTAATGTTCAGCAGATTGGGTTTGGTGGTGGCAGTGCC 171
consensus_13126#1 --------------------------------------------------------TGCG 4
consensus_13126#3 ACTTTTTTATTGGTGATTCCCTCTAATGTTCAGCAGATTGGGTTTGGTGGTGGCAGTGCC 66
consensus_13126#4 ------------------------AATACTTGTAGTTTTGAATTTGATAATCTGA---TC 33
consensus_13126#0 GCACCACTGATTTGTGTTAGACATTGGTCCTTATCCAACCCTCTAATCTCTTGATTATGC 780
consensus_13126#2 GCACCACTGATTTGTGTTAGACATTGGTCCTTATCCAACCCTCTAATCTCTTGATTATGC 231
consensus_13126#1 CCACCACTGATTTGTGTTAGACATTGGTCCTTATCCAACCCTCTAATCTCTTGATTATGC 64
consensus_13126#3 GCACCACTGATTTGTGTTAGACATTGGTCCTTATCCAACCCTCTAATCTCTTGATTATGC 126
consensus_13126#4 GAAAAAATAGTTAACCCCAAAATCCTTTCCCAAAACCATGAGCTAAACGATTACTCTTGC 93
* * * ** * * *** * * * **** * ** * ***
consensus_13126#0 TCACTTACGATG-ACTTCAGCTCAGGTGGTTGCAAGAAACACTCCTAGACTGCTATTTAG 839
consensus_13126#2 TCACTTACGATG-ACTTCAGCTCAGGTGGTTGCAAGAAACACTCCTAGACTGCTATTTAG 290
consensus_13126#1 TCACTTACGATG-ACTTCAGCTCAGGTGGTTGCAAGAAACACTCCTAGACTGCTATTTAG 123
consensus_13126#3 TCACTTACGATG-ACTTCAGCTCAGGTGGTTGCAAGAAACACTCCTAGACTGCTATTTAG 185
consensus_13126#4 TAACTCCAACTATACAATACCCCTTTTTCTGGAACTAAATATTG--ACACTACCATCCTT 151
* *** * ** * * * * * * * *** * * * *** * **
consensus_13126#0 TTTTACGTTA-CAGGGATTTGGC-TACAGATAGTTGCAAGCTGCAATGTTCTGATATTTG 897
consensus_13126#2 TTTTACGTTA-CAGGGATTTGGC-TACAGATAGTTGCAAGCTGCAATGTTCTGATATTTG 348
consensus_13126#1 TTTTACGTTA-CAGGGATTTGGC-TACAGATAGTTGCAAGCTGCAATGTTCTGATATTTG 181
consensus_13126#3 TTTTACGTTA-CAGGGATTTGGC-TACAGATAGTTGCAAGCTGCAATGTTCTGATATTTG 243
consensus_13126#4 TCACAAATTAATAAAAACTCTACGTATTGACCCTACCATCCTTTCCCAAAATAATAAAAA 211
* * *** * * * * ** ** * ** ** * ***
consensus_13126#0 TTATGTTTTAGAGCAAGATCTGCCTTATATATAATGTTATAATTAGGCTTCGAATTTCTT 957
consensus_13126#2 TTATGTTTTAGAGCAAGATCTGCCTTATATATAATGTTATAATTAGGCTTCGAATTTCTT 408
consensus_13126#1 TTATGTTTTAGAGCAAGATCTGCCTTATATATAATGATATAATTAGGCTTCGAATTTCTT 241
consensus_13126#3 TTATGTTTTAGAGCAAGATCTGCCTTATATATAATGTTATAATTAGGCTTCGAATTTCTT 303
consensus_13126#4 CTATACATAAAACTGGGGGGGGATTGCTTTTCATAATTCCATCTAAACT--AAACCCCAT 269
*** * * * * * * * * * * * ** ** ** * *
consensus_13126#0 GCTTATGTTCTTTAAAAAT-TCCAAGTAACCTTTTCAGTTCTTTCTGTCAGGTTAATTGA 1016
consensus_13126#2 GCTTATGTTCTTTAAAAAT-TCCAAGTAACCTTTTCAGTTCTTTCTGTCAGGTTAATTGA 467
consensus_13126#1 GCTTATGTTCTTTAAAAAT-TCCAAGTAACCTTTTCAGTTCTTTATGTCAGGTTAATTGA 300
consensus_13126#3 GCTTATGTTCTTTAAAAAT-TCCAAGTAACCTTTTCAGTTCTTTCTGTCAGGTTAATTGA 362
consensus_13126#4 TTTCGGGAACTCAAGGCTCATTCGTTTACTTCTTCCGGAGGCTTCTCACGGGTCAA--AA 327
* * ** * * * ** ** * * ** * * *** ** *
consensus_13126#0 CAGATCGAGTTGCACTT-ACACATATCTTGT---TTTAGGAAATG----CTCCAATGGCC 1068
consensus_13126#2 CAGATCGAGTTGCACTT-ACACATATCTTGT---TTTAGGAAATG----CTCCAATGGCC 519
consensus_13126#1 CAGATCGAGTTGCACTT-ACACATATCTTGT---TTTAGGAAATG----CTCCAATGGCC 352
consensus_13126#3 CAGATCGAGTTGCACTT-ACACATATCTTGT---TTTAGGAAATG----CTCCAATGGCC 414
consensus_13126#4 TGAAATATGTTATACTTGACCAATATCGTCTGAATATCGAGCACCTTGTCTTCATCAGCT 387
* *** **** ** ***** * * * * * * ** ** **
consensus_13126#0 CT-TGAATCCAGCAAAATTGGTAGTTCCTCTCGTCCTCCAGGCACCAGCTATAGACAATA 1127
consensus_13126#2 CT-TGAATCCAGCAAAATTGGTAGTTCCTCTCGTCCTCCAGGCACCAGCTATAGACAATA 578
consensus_13126#1 CT-TGAATCCAGCAAAATTGGTAGTTCCTCTCGTCCTCCAGGCACCAGCTATGGACAATA 411
consensus_13126#3 CT-TGAATCCAGCAAAATTGGTAGTTCCTCTCGTCCTCCAGGCACCAGCTATAGACAATA 473
consensus_13126#4 TTATTGAGAGGGTTAAGCTAGCAGCCAGCAGGGAATTCTCAGATAAAACAACAATTAAAA 447
* * * * ** * * ** * ** * * * * ** *
consensus_13126#0 TCTATACCTCAAGGAAGCCTCTTCATGTTCCCCTCAATATT-TCTTTCTGGGTGCATGCA 1186
consensus_13126#2 TCTATACCTCAAGGAAGCCTCTTCATGTTCCCCTCAATATT-TCTTTCTGGGTGCATGCA 637
consensus_13126#1 TCTATACCTCAAGGAAGCCTCTTCATGTTCCCCTCAATATT-TCTTTCTGGGTGCATGCA 470
consensus_13126#3 TCTATACCTCAAGGAAGCCTCTTCATGTTCCCCTCAATATT-TCTTTCTGGGTGCATGCA 532
consensus_13126#4 GCTAAACCCCAATAAAAAATCAAAAAGTTCTATACTACTTCATACTTCAAAAGGAATTAA 507
*** *** *** ** ** * **** * * * * *** * ** *
consensus_13126#0 CTCTATGCTTGCTATGCAAAACCCAATGTATGTGAATGTGATCCTTATGCTGCAAAGGTG 1246
consensus_13126#2 CTCTATGCTTGCTATGCAAAACCCAATGTATGTGAATGTGATCCTTATGCTGCAAAGGTG 697
consensus_13126#1 CTCTATGCTTGCTATGCAAAACCCAATGTATGTGAATGTGATCCTTATGCTGCAAAGCTT 530
consensus_13126#3 CTCTATGCTTGCTATGCAAAACCCAATGTATGTGAATGTGATCCTTATGCTGCAAAGCT- 591
consensus_13126#4 AAAAACTTCAAATTTTCAACCACCAAGCTTAATGC---TGACTTGAATGACAAAAAAGGG 564
* * * *** **** * ** *** *** ***
consensus_13126#0 CTACTATAAACACTTCGTTCTTTTATCTATTTATTTAAACATTCTTTGTTGGTGTCGGTG 1306
consensus_13126#2 CTACTATAAACACTTCGTTCTTTTATCTAAGGATTTAAACATTCTTTGTTGGTGTCGGTG 757
consensus_13126#1 A-ACCATCTCAATAAAGCTGATGAAGACAAGGTGCTCGATATTCA--GACGATATTGGTC 587
consensus_13126#3 -------------------GATGAAGACAAGGTGCTCGATATTCA--GACGATATTGGTC 630
consensus_13126#4 ATATC------------CTCTTTAAAA--------------------------------- 579
* *
consensus_13126#0 CATTGCCTCTGAATTTTAGATCTTTTTTAGTGCAAAATGCATATGAATGTGTGGCATTGA 1366
consensus_13126#2 CAA-ACAAAAAAAGA--------------------------------------------- 771
consensus_13126#1 AAGTATAAC-ATATTTCATATTGACCAGTGAGAAGCATCCAGAAGAAGTAAACGAATGAG 646
consensus_13126#3 AAGTATAAC-ATATTTCATATTGACCAGTGAGAAGCATCCGGAAGAAGTAAACGAATGAG 689
consensus_13126#4 ------------------------------------------------------------
consensus_13126#0 TATTCCCTTGGAGATGAAACAAGGTATTCAGTGTTTGCAAATTAACATTTACGAGTAGGA 1426
consensus_13126#2 ------------------------------------------------------------
consensus_13126#1 CATTGAGTTCCAGAAAATGGTGTATAGTATAGATGGAATTATGAAAAGCAATCACCCT-C 705
consensus_13126#3 CATTGAGTTCCAGAAAATGGTGTATAGTATAGATGGAATTATGAAAAGCAATCAACCTGC 749
consensus_13126#4 ------------------------------------------------------------
consensus_13126#0 TTTACCTAGCTAGCATGGCCTCTTTCATAGCCACTTTTGCATGTATGAATCTTTGTAAAT 1486
consensus_13126#2 ------------------------------------------------------------
consensus_13126#1 ATGTTTTATGTATAGTTTTTATTATTTTGTGAAAGGATGGTAGTGTCAATATGTAGAGGT 765
consensus_13126#3 ATGTTTTATGTATAGTTTTTA--------------------------------------- 770
consensus_13126#4 ------------------------------------------------------------
consensus_13126#0 TGTGGTCCTATAGGCAAATAGAAAGGTAAAA--------- 1517
consensus_13126#2 ----------------------------------------
consensus_13126#1 TTTATTAATTTGTGAAAGGATGGTAGTGTCAATAAAAAGA 805
consensus_13126#3 ----------------------------------------
consensus_13126#4 ----------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||