cluster # 13150

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Oryza sativa
cluster # 13150 cluster # 13150 Sequences # 12 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13150#0 length = 1861 sequences # 8

consensus_13150#1 length = 774 sequences # 2
consensus_13150#2 length = 447 sequences # 2

consensusID : consensus_13150#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1861
fasta sequence

                              [GAGTGGAGGAGGAGTCGGGTTCTTGCCGCGGCGGAGCTCGCACGCATGAAGCTACTGTGCAGCGCGTGCGAGGCGGCGGAGGCCAGCGTCCTCTGCTGCGCCGACGAGGCCGCCCTGTGCGCGCGCTGCGACCGCGACATCCACGCCGCCAACCGCCTCGCCGGGAAGCACCTCCGCCTCCCTCTCCTCTCCCCCGCCTCCTCCTCCTCCTCCTCCGCCGCCGCCCTCGCGCCGCCGCCGCCGTCGCCGCCCAAGTGCGACATATGCCAGGAGAGCCACGCGTACTTCTTCTGCCTCGAGGACCGCGCGCTGCTGTGCCGGAGCTGCGACGTGGCGGTGCACACGGCCAACGCCTTCGTCTCCGCGCACCGCCGTTTCCTCCTCACCGGCGTGCAGGTCGGGC-AGGAGCAGGACGAGCACTCCCCTGACCCGCCTGAGCCGTCTCCTCCTCCGCCGCCGCCGCCGCCTGCATCCAAGAGCGACCACCCGGCGCCGCTCTACGGCGAGGGCGGAGGAGGGTTCAGCTGGGACGCCGCCGACTCGCCGGCCGCGGGCGGCCTCCCCGACTGGTCGGCCGTCGTCGACCAGTTCGGCTCCCCGCCGCCGCCGCGCCACACGGACACCGCGACCGTGACGACCCCGCCGCCGACCAAGAGGAGCCCACGCGCGCCGGCGTTCGGCGGCCAGGGCGGCATGATGGATTGGCCCCTCGGCGAGTTCTTCGGCGGCTTCACCGACTTCACCGGCGGCTTTGGCTTCGGCTTCGGCGACAGTGGCACCTCCAAGGCTGACAGCGGGAAGCTGGGAGGGAGCACGGACGGCTCGCCGTACTACCGGTCGTCATCGGAAGATGACCGGAACGCCGACGAGCTCTTCGGGCAGGTACCAGAGATCCAGTGGTCGGTGCCGGAGCTCCCCTCGCCGCCGACGGCCTCCGGCCTCCACTGGCAACGCCATCCAGCCGCCACTCACGGCGGCGGCGGCGGCGGACCCGACACCACCGCCTTCGTCCCCGACATCTGCTCCCCCGACAGCTGCTTCCCGGCCACCACCTCCAAACGCCGGAGGCAATAATGCTAGCTAGCTAATAGCTATGTCCAGAGGTTGAAGACGACGACGACGACGACGACCAGCCATGTGAGTGTGACTGCGATTGCTAATAGCTCGAGACGCTGACGTGATCGTGTGTGGTACCACCTTTCATGGCGATGGCGCCAACTACAATGTTAGGTAGGAGAAGCTTTCTACTCGTCTGGTGGTTGGTTGGTTGGTTGTTGACGATGATGATCTGTTGCCATTTCCGGCGACATCGAGGCGGAAACAGATCTCTCTGATTTTGAGTGCCTGACATATGGGTTTCATGTCTAATGGGTTCTTATATTAGCGACCCACATTAGCAGTATTGTAGAGAAGACTTGTTGAAAACAGCCGCAATCAGCATTGGCTGACAAATACAGTTGGGGGAGATCGATGGAACTACAGTGTACAGTCTATGCTCTGCAGCATCTGATTCTGATCCTGAAGTCTGGAAAGAGGAAGAAGAAGATTAGAAAGAAGAGAGGCCTCTGCTTTTTCGATGGCCGAAACTGAGATGCACCTCGCTAATTGGTGGGCAGTGGACAGGATAGGATAGGGGCCATGTGATGGATTGATGGTGATGCTCTACTTTGTTCAGAACAGAAGTCTCTGAATTTTGGTTGGATCACAGAAACTTGTAAAAGATTCTTGCATGTGTACAGAAGTTTTATACTACAGTAGTTAGATAGAAACATGGATGGATCCGTGAGAAAAGAAAAATGCTGGTAATGTTGTATTGTACTAGTAAAAGAAAATGTTATATGTTTTTAACTCGGCTGATTCA]

[+] EMBL BE229862             [GAGTGGAGGAGGAGTCGGGTTCTTGCCGCGGCGGA ATCGCACGCATGAAGCTGCTGTGCAGCGCGTGCGAAGCGGCGGAAGCCAGCGTCCTCTGCTGCGCCGACGANGCCGCCCTGTGCGCGCGCTGCGACCGCGACATCCACGCCGCCAACCGCCTCGCCGGGAAGCACCTCCGCCTCCCTCTCCTCTCCCCCGCCTCCTCCTCCTCC CCTCCGCCGCCGCCCTCGCGCCGCCGCCGCCGTCGCCGCCCAAGTGCGACATATGCCAGGAGAGCCACGCGTNCTTCTTCTGCCTCGAGGACCGCGCGCTGCTGTGCCGGAGCTGCGACGTGGCGGTGCNCNCGGCCNACGCCTTCGTCTCCGCGCACCGCCGTTTCCTCCTCNCCGGCGTGCNNGTCGGGCAAGGAACANGACGAGCACTCCCCTGACCCGCCTGA CCGTCTCCTCCTCCGCCGCCGCCGCCGCCTGCATCCAAGAGCGA CACCCGGCGCCGCTCTACGGCGAAGGCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CB647356             [                 GGTTCTTGCCGCGGCGGAGCTCGCACGCATGAAGCTACTGTGCAGCGCGTGCGAGGCGGCGGAGGCCAGCGTCCTCTGCTGCGCCGACGAGGCCGCCCTGTGCGCGCGCTGCGACCGCGACATCCACGCCGCCAACCGCCTCGCCGGGAAGCACCTCCGCCTCCCTCTCCTCTCCCCCGCCTCCTCCTCCTCCTCCTCCGCCGCCGCCCTCGCGCCGCCGCCGCCGTCGCCGCCCAAGTGCGACATATGCCAGGAGAGCCACGCGTACTTCTTCTGCCTCGAGGACCGCGCGCTGCTGTGCCGGAGCTGCGACGTGGCGGTGCACACGGCCAACGCCTTCGTCTCCGCGCACCGCCGTTTCCTCCTCACCGGCGTGCAGGTCGGGC AGGAGCAGGACGAGCACTCCCCTGACCCGCCTGAGCCGTCTCCTCCTCCGCCGCCGCCGCCGCCTGCATCCAAGAGCGACCACCCGGCGCCGCTCTACGGCGAGGGCGGAGGAGGGTTCAGCTGGGACGCCGCCGACTCGCCGGCCGCGGGCGGCCTCCCCGACTGGTCGGCCGTCGTCGACCAGTTCGGCTCCCCGCCGCCGCCGCGCCACACGGACACCGCGACCGTGACGACCCCGCCGCCGACCAAGAGGAGCCCACGCGCGCCGGCGTTCGGCGGCCAGGGCGGCATGATGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CB673914             [                 GGTTCTTGCCGCGGCGGAGCTCGCACGCATGAAGCTACTGTGCAGCGCGTGCGAGGCGGCGGAGGCCAGCGTCCTCTGCTGCGCCGACGAGGCCGCCCTGTGCGCGCGCTGCGACCGCGACATCCACGCCGCCAACCGCCTCGCCGGGAAGCACCTCCGCCTCCCTCTCCTCTCCCCCGCCTCCTCCTCCTCCTCCTCCGCCGCCGCCCTCGCGCCGCCGCCGCCGTCGCCGCCCAAGTGCGACATATGCCAGGAGAGCCACGCGTACTTCTTCTGCCTCGAGGACCGCGCGCTGCTGTGCCGGAGCTGCGACGTGGCGGTGCACACGGCCAACGCCTTCGTCTCCGCGCACCGCCGTTTCCTCCTCACCGGCGTGCAGGTCGGGC AGGAGCAGGACGAGCACTCCCCTGACCCGCCTGAGCCGTCTCCTCCTCCGCCGCCGCCGCCGCCTGCATCCAAGAGCGACCACCCGGCGCCGCTCTACGGCGAGGGCGGAGGAGGGTTCAGCTGGGACGCCGCCGACTCGCCGGCCGCGGGCGGCCTCCCCGACTGGTCGGCCGTCGTCGACCAGTTCGGCTCCCCGCCGCCGCCGCGCCACACGGACACCGCGACCGTGACGACCCCGCCGCCGACCAAGAGGAGCCCACGCGCGCCGGCGTTCGGCGGCCAGGGCGGCATGATGGATTGGCCCCTCGGCGAGTTCTTCGGCGGCTTCACCGACTTCACCGGCGGCTTTGGCTTCGGCTTCGGCGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CB647486             [                                                                                                                                                                                                                                                                                     ACGCGTACCTCTTCTGCCTCGAGGACCGCGCGCTGCTGTGCCGGAGCTGCGACGTGGCGGTGCACACGGCCAACGCCTTCGTCTCCGCGCACCGCCGTTTCCTCCTCACCGGCGTGCAGGTCGGGC AGGAGCAGGACGAGCACTCCCCTGACCCGCCTGAGCCGTCTCCTCCTCCGCCGCCGCCGCCGCCTGCATCCAAGAGCGACCACCCGGCGCCGCTCTACGGCGAGGGCGGAGGAGGGTTCAGCTGGGACGCCGCCGACTCGCCGGCCGCGGGCGGCCTCCCCGACTGGTCGGCCGTCGTCGACCAGTTCGGCTCCCCGCCGCCGCCGCGCCACACGGACACCGCGACCGTGACGACCCCGCCGCCGACCAAGAGGAGCCCACGCGCGCCGGCGTTCGGCGGCCAGGGCGGCATGATGGATTGGCCCCTCGGCGAGTTCTTCGGCGGCTTCACCGACTTCACCGGCGGCTTTGGCTTCGGCTTCGGCGACAGTGGCACCTCCAAGGCTGACAGCGGGAAGCTGGGAGGGAGCACGGACGGCTCGCCGTACTACCGGTCGTCATCGGAAGATGACCGGAACGCCGACGAGCTCTTCGGGCAGGTACCAGAGATCCAGTGGTCGGTGCCGGAGCTCCCCTCGCCGCCGACGGCCTCCGGCCTCCACTGGCAACGCCATCCAGCCGCCACTCACGGCGGCGGCGGCGGCGGACCCGACACCACCGCCTTCGTCCCCGACATCTGCTCCCCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AK106865             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CAAGAGCGACCACCCGGCGCCGCTCTACGGCGAGGGCGGAGGAGGGTTCAGCTGGGACGCCGCCGACTCGCCGGCCGCGGGCGGCCTCCCCGACTGGTCGGCCGTCGTCGACCAGTTCGGCTCC   CCGCCGCCGCGCCACACGGACACCGCGACCGTGACGACCCCGCCGCCGACCAAGAGGAGCCCACGCGCGCCGGCGTTCGGCGGCCAGGGCGGCATGATGGATTGGCCCCTCGGCGAGTTCTTCGGCGGCTTCACCGACTTCACCGGCGGCTTTGGCTTCGGCTTCGGCGACAGTGGCACCTCCAAGGCTGACAGCGGGAAGCTGGGAGGGAGCACGGACGGCTCGCCGTACTACCGGTCGTCATCGGAAGATGACCGGAACGCCGACGAGCTCTTCGGGCAGGTACCAGAGATCCAGTGGTCGGTGCCGGAGCTCCCCTCGCCGCCGACGGCCTCCGGCCTCCACTGGCAACGCCATCCAGCCGCCACTCACGGCGGCGGCGGCGGCGGACCCGACACCACCGCCTTCGTCCCCGACATCTGCTCCCCCGACAGCTGCTTCCCGGCCACCACCTCCAAACGCCGGAGGCAATAATGCTAGCTAGCTAATAGCTATGTCCAGAGGTTGAAGACGACGACGACGACGACGACCAGCCATGTGAGTGTGACTGCGATTGCTAATAGCTCGAGACGCTGACGTGATCGTGTGTGGTACCACCTTTCATGGCGATGGCGCCAACTACAATGTTAGGTAGGAGAAGCTTTCTACTCGTCTGGTGGTTGGTTGGTTGGTTGTTGACGATGATGATCTGTTGCCATTTCCGGCGACATCGAGGCGGAAACAGATCTCTCTGATTTTGAGTGCCTGACATATGGGTTTCATGTCTAATGGGTTCTTATATTAGCGACCCACATTAGCAGTATTGTAGAGAAGACTTGTTGAAAACAGCCGCAATCAGCATTGGCTGACAAATACAGTTGGGGGAGATCAATGGAACTACAGTGTACAGTCTATGCTCTGCAGCATCTGATTCTGATCCTGAAGTCTGGAAAGAGGAAGAAGAAGATTAGAAAGAAGAGAGGCCTCTGCTTTTTCGATGGCCGAAACTGAGATGCACCTCGCTAATTGGTGGGCAGTGGACAGGATAGGATAGGGGCCATGTGATGGATTGATGGTGATGCTCTACTTTGTTCAGAACAGAAGTCTCTGAATTTTGGTTGGATCACAGAAACTTGTAAAAGATTCTTGCATGTGTACAGAAGTTTTATACTACAGTAGTTAGATAGAAACATGGATGGATCCGTGAGAAAAGAAAAATGCTGGTAATGTTGTATTGTACTAGTAAAAGAAAATGTTATATGTTTTTAACTCGGCTGATTCA]
[-] EMBL CB673915             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TAGCTAGCTAATAGCTATGTCCAGAGGTTGAAGACGACGACGACGACGACGACCAGCCATGTGAGTGTGACTGCGATTGCTAATAGCTCGAGACGCTGACGTGATCGTGTGTGGTACCACCTTTCATGGCGATGGCGCCAACTACAATGTTAGGTAGGAGAAGCTTTCTACTCGTCTGGTGGTTGGTTGGTTGGTTGTTGACGATGATGATCTGTTGCCATTTCCGGCGACATCGAGGCGGAAACAGATCTCTCTGATTTTGAGTGCCTGACATATGGGTTTCATGTCTAATGGGTTCTTATATTAGCGACCCACATTAGCAGTATTGTAGAGAAGACTTGTTGAAAACAGCCGCAATCAGCATTGGCTGACAAATACAGTTGGGGGAGATCGATGGAACTACAGTGTACAGTCTATGCTCTGCAGCATCTGATTCTGATCCTGAAGTCTGGAAAGAGGAAGAAGAAGATTAGAAAGAAGAGAGGCCTCTGCTTTTTCGATGGCCGAAACTGAGATGCACCTCGCTAATTGGTGGGCAGTGGACAGGATAGGATAGGGGCCATGTGATGGATTGATGGTGATGCTCTACTTTGTTCAGAACAGAAGTCTCTGAATTTTGGTTGGATCACAGAAACTTGTAAAAGATTCTTGCATGTGTACAGAAGTTTTATACTACAGTAGTTAGATAGAAACATGGATGGATCCGTGAGAAAAGAAAAATGCTGGTAATGTTGTATTGTACTAGTAAAAGAAAATGTTA                        ]
[-] EMBL CB647487             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CAGAGGTTGAAGACGACGACGACGACGACGACCAGCCATGTGAGTGTGACTGCGATTGCTAATAGCTCGAGACGCTGACGTGATCGTGTGTGGTACCACCTTTCATGGCGATGGCGCCAACTACAATGTTAGGTAGGAGAAGCTTTCTACTCGTCTGGTGGTTGGTTGGTTGGTTGTTGACGATGATGATCTGTTGCCATTTCCGGCGACATCGAGGCGGAAACAGATCTCTCTGATTTTGAGTGCCTGACATATGGGTTTCATGTCTAATGGGTTCTTATATTAGCGACCCACATTAGCAGTATTGTAGAGAAGACTTGTTGAAAACAGCCGCAATCAGCATTGGCTGACAAATACAGTTGGGGGAGATCGATGGAACTACAGTGTACAGTCTATGCTCTGCAGCATCTGATTCTGATCCTGAAGTCTGGAAAGAGGAAGAAGAAGATTAGAAAGAAGAGAGGCCTCTGCTTTTTCGATGGCCGAAACTGAGATGCACCTCGCTAATTGGTGGGCAGTGGACAGGATAGGATAGGGGCCATGTGATGGATTGATGGTGATGCTCTACTTTGTTCAGAACAGAAGTCTCTGAATTTTGGTTGGATCACAGAAACTTGTAAAAGATTCTTGCATGTGTACAGAAGTTTTATACTACAGTAGTTAGATAGAAACATGGATGGATCCGTGAGAAAAGAAAAATGCTGGTAATGAAGGGTTGTACTAGTAAAAGAAAATGTTATATGTTTT                ]
[-] EMBL CB647357             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    AAGACGACGACGACGACGACGACCAGCCATGTGAGTGTGACTGCGATTGCTAATAGCTCGAGACGCTGACGTGATCGTGTGTGGTACCACCTTTCATGGCGATGGCGCCAACTACAATGTTAGGTAGGAGAAGCTTTCTACTCGTCTGGTGGTTGGTTGGTTGGTTGTTGACGATGATGATCTGTTGCCATTTCCGGCGACATCGAGGCGGAAACAGATCTCTCTGATTTTGAGTGCCTGACATATGGGTTTCATGTCTAATGGGTTCTTATATTAGCGACCCACATTAGCAGTATTGTAGAGAAGACTTGTTGAAAACAGCCGCAATCAGCATTGGCTGACAAATACAGTTGGGGGAGATCGATGGAACTACAGTGTACAGTCTATGCTCTGCAGCATCTGATTCTGATCCTGAAGTCTGGAAAGAGGAAGAAGAAGATTAGAAAGAAGAGAGGCCTCTGCTTTTTCGATGGCCGAAACTGAGATGCACCTCGCTAATTGGTGGGCAGTGGACAGGATAGGATAGGGGCCATGTGATGGATTGATGGTGATGCTCTACTTTGTTCAGAACAGAAGTCTCTGAATTTTGGTTGGATCACAGAAACTTGTAAAAGATTCTTGCATGTGTACAGAAGTTTTATACTACAGTAGTTAGATAGAAACATGGATGGATCCGTGAGAAAAGAAAAATGCTGGTAATGTTGTATTGTACTAGTAAAAGAAAATGTTATATGTTTTTAACTC          ]




>consensus_13150#0
GAGTGGAGGAGGAGTCGGGTTCTTGCCGCGGCGGAGCTCGCACGCATGAAGCTACTGTGC
AGCGCGTGCGAGGCGGCGGAGGCCAGCGTCCTCTGCTGCGCCGACGAGGCCGCCCTGTGC
GCGCGCTGCGACCGCGACATCCACGCCGCCAACCGCCTCGCCGGGAAGCACCTCCGCCTC
CCTCTCCTCTCCCCCGCCTCCTCCTCCTCCTCCTCCGCCGCCGCCCTCGCGCCGCCGCCG
CCGTCGCCGCCCAAGTGCGACATATGCCAGGAGAGCCACGCGTACTTCTTCTGCCTCGAG
GACCGCGCGCTGCTGTGCCGGAGCTGCGACGTGGCGGTGCACACGGCCAACGCCTTCGTC
TCCGCGCACCGCCGTTTCCTCCTCACCGGCGTGCAGGTCGGGCAGGAGCAGGACGAGCAC
TCCCCTGACCCGCCTGAGCCGTCTCCTCCTCCGCCGCCGCCGCCGCCTGCATCCAAGAGC
GACCACCCGGCGCCGCTCTACGGCGAGGGCGGAGGAGGGTTCAGCTGGGACGCCGCCGAC
TCGCCGGCCGCGGGCGGCCTCCCCGACTGGTCGGCCGTCGTCGACCAGTTCGGCTCCCCG
CCGCCGCCGCGCCACACGGACACCGCGACCGTGACGACCCCGCCGCCGACCAAGAGGAGC
CCACGCGCGCCGGCGTTCGGCGGCCAGGGCGGCATGATGGATTGGCCCCTCGGCGAGTTC
TTCGGCGGCTTCACCGACTTCACCGGCGGCTTTGGCTTCGGCTTCGGCGACAGTGGCACC
TCCAAGGCTGACAGCGGGAAGCTGGGAGGGAGCACGGACGGCTCGCCGTACTACCGGTCG
TCATCGGAAGATGACCGGAACGCCGACGAGCTCTTCGGGCAGGTACCAGAGATCCAGTGG
TCGGTGCCGGAGCTCCCCTCGCCGCCGACGGCCTCCGGCCTCCACTGGCAACGCCATCCA
GCCGCCACTCACGGCGGCGGCGGCGGCGGACCCGACACCACCGCCTTCGTCCCCGACATC
TGCTCCCCCGACAGCTGCTTCCCGGCCACCACCTCCAAACGCCGGAGGCAATAATGCTAG
CTAGCTAATAGCTATGTCCAGAGGTTGAAGACGACGACGACGACGACGACCAGCCATGTG
AGTGTGACTGCGATTGCTAATAGCTCGAGACGCTGACGTGATCGTGTGTGGTACCACCTT
TCATGGCGATGGCGCCAACTACAATGTTAGGTAGGAGAAGCTTTCTACTCGTCTGGTGGT
TGGTTGGTTGGTTGTTGACGATGATGATCTGTTGCCATTTCCGGCGACATCGAGGCGGAA
ACAGATCTCTCTGATTTTGAGTGCCTGACATATGGGTTTCATGTCTAATGGGTTCTTATA
TTAGCGACCCACATTAGCAGTATTGTAGAGAAGACTTGTTGAAAACAGCCGCAATCAGCA
TTGGCTGACAAATACAGTTGGGGGAGATCGATGGAACTACAGTGTACAGTCTATGCTCTG
CAGCATCTGATTCTGATCCTGAAGTCTGGAAAGAGGAAGAAGAAGATTAGAAAGAAGAGA
GGCCTCTGCTTTTTCGATGGCCGAAACTGAGATGCACCTCGCTAATTGGTGGGCAGTGGA
CAGGATAGGATAGGGGCCATGTGATGGATTGATGGTGATGCTCTACTTTGTTCAGAACAG
AAGTCTCTGAATTTTGGTTGGATCACAGAAACTTGTAAAAGATTCTTGCATGTGTACAGA
AGTTTTATACTACAGTAGTTAGATAGAAACATGGATGGATCCGTGAGAAAAGAAAAATGC
TGGTAATGTTGTATTGTACTAGTAAAAGAAAATGTTATATGTTTTTAACTCGGCTGATTC
A

consensusID : consensus_13150#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 774
fasta sequence

                              [TCTCGTTGGGCTAACGACGCGGCGATCGAGTAGCTTAGCTAGCTGAAGCTGCCACATGAAGATCGGGTGCGACGCGTGCGAGCAGGCGGAGGCGGCGGTGCTGTGCTGCGCCGACGAGGCCGCGCTCTGCCGCCGCTGCGACGCCGCCGTCCACTCCGCCAACAGGCTCGCCGGCAAGCACACCCGCGTCGCGCTCCTCCTCCCCTCCTCCTCCTCCGCCGCCGCCGGCGACGACGACCACCACCCCACCTGCGACATCTGCCAGGAGAAGACGGGCTACTTCTTCTGCCTCGAGGACCGCGCCCTGCTCTGCCGGAGCTGCGACGTCGCCGTCCACACCGCCACTGCGCACGCCGCCGCCCACCGCCGCTTCCTCATCACCGGCGTCCGCATCGGCGGCAGCGTCGACGCCGCCGCCGCGGCCGACGTCATCGTCAGCCCAACAAGCAGCAGCATCGCGCCGGCCGGCTCGGCCAGCAGCAACCACGCCGGCGCCGCCGGCAACAACAATGGCCGGTCGCCGGCGCCGGTGAGGTTCTCAGGGGGAGACGGCGGCGTTGAGCCGGAGCAGCAGTGGCCGTGGAGTGACGTCTTCGCCGCCGACGACGACGATGACGTCAGCGCCGCCATGGAGCAGTGCTACTATCATGGCATCTCTGAACCTCACTCCTCCAGCCTCACTGGATGATGGCAGCTTAGCTTCAGTCAAATTAATTAATGAGCTGCTATAATTGATTTCCATGAACTGATCCCACAGAGGTCATCAACATCGAG]

[+] EMBL AK067820             [TCTCGTTGGGCTAACGACGCGGCGATCGAGTAGCTTAGCTAGCTGAAGCTGCCACATGAAGATCGGGTGCGACGCGTGCGAGCAGGCGGAGGCGGCGGTGCTGTGCTGCGCCGACGAGGCCGCGCTCTGCCGCCGCTGCGACGCCGCCGTCCACTCCGCCAACAGGCTCGCCGGCAAGCACACCCGCGTCGCGCTCCTCCTCCCCTCCTCCTCCTCCGCCGCCGCCGGCGACGACGACCACCACCCCACCTGCGACATCTGCCAGGAGAAGACGGGCTACTTCTTCTGCCTCGAGGACCGCGCCCTGCTCTGCCGGAGCTGCGACGTCGCCGTCCACACCGCCACTGCGCACGCCGCCGCCCACCGCCGCTTCCTCATCACCGGCGTCCGCATCGGCGGCAGCGTCGACGCCGCCGCCGCGGCCGACGTCATCGTCAGCCCAACAAGCAGCAGCATCGCGCCGGCCGGCTCGGCCAGCAGCAACCACGCCGGCGCCGCCGGCAACAACAATGGCCGGTCGCCGGCGCCGGTGAGGTTCTCAGGGGGAGACGGCGGCGTTGAGCCGGAGCAGCAGTGGCCGTGGAGTGACGTCTTCGCCGCCGACGACGACGATGACGTCAGCGCCGCCATGGAGCAGTGCTACTATCATGGCATCTCTGAACCTCACTCCTCCAGCCTCACTGGATGATGGCAGCTTAGCTTCAGTCAAATTAATTAATGAGCTGCTATAATTGATTTCCATGAACTGATCCCACAGAGGTCATCAACATCGAG]
[+] EMBL CF326420             [          CTAACGACGCGGCGATCGAGTAGCTTAGCTAGCTGAAGCTGCCACATGAAGATCGGGTGCGACGCGTGCGAGCAGGCGGAGGCGGCGGTGCTGTGCTGCGCCGACGAGGCCGCGCTCTGCCGCCGCTGCGACGCCGTCGTCCACTCCGCCAACAGGCTCGCCGGCAAGCACACCCGCGTCGCGCTCCTCCTCCCCTCCTCCTCCTCCGCCGCCGCCGGCGACGACGACCACCACCCCACCTGCGACATCTGCCAGGAGAAGACGGGCTACTTCTTCTGCCTCGAGGACCGCGCCCTGCTCTGCCGGAGCTGCGACGTCGC                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]




>consensus_13150#1
TCTCGTTGGGCTAACGACGCGGCGATCGAGTAGCTTAGCTAGCTGAAGCTGCCACATGAA
GATCGGGTGCGACGCGTGCGAGCAGGCGGAGGCGGCGGTGCTGTGCTGCGCCGACGAGGC
CGCGCTCTGCCGCCGCTGCGACGCCGCCGTCCACTCCGCCAACAGGCTCGCCGGCAAGCA
CACCCGCGTCGCGCTCCTCCTCCCCTCCTCCTCCTCCGCCGCCGCCGGCGACGACGACCA
CCACCCCACCTGCGACATCTGCCAGGAGAAGACGGGCTACTTCTTCTGCCTCGAGGACCG
CGCCCTGCTCTGCCGGAGCTGCGACGTCGCCGTCCACACCGCCACTGCGCACGCCGCCGC
CCACCGCCGCTTCCTCATCACCGGCGTCCGCATCGGCGGCAGCGTCGACGCCGCCGCCGC
GGCCGACGTCATCGTCAGCCCAACAAGCAGCAGCATCGCGCCGGCCGGCTCGGCCAGCAG
CAACCACGCCGGCGCCGCCGGCAACAACAATGGCCGGTCGCCGGCGCCGGTGAGGTTCTC
AGGGGGAGACGGCGGCGTTGAGCCGGAGCAGCAGTGGCCGTGGAGTGACGTCTTCGCCGC
CGACGACGACGATGACGTCAGCGCCGCCATGGAGCAGTGCTACTATCATGGCATCTCTGA
ACCTCACTCCTCCAGCCTCACTGGATGATGGCAGCTTAGCTTCAGTCAAATTAATTAATG
AGCTGCTATAATTGATTTCCATGAACTGATCCCACAGAGGTCATCAACATCGAG

consensusID : consensus_13150#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 447
fasta sequence

                              [ATCACCGGCTGTCCGCATCGGCGGCAGCCGTCTGA-CGCCTCCCCCGCCGACGTCATCGTCAGCCCAACAAGCAGCAGCATCGCGCC-GCCGGCTCGGCCAGCAGCAACCACGCCGTCGCCAGGCAGCCGGCAGCCGCCGGCAACAACCATGGCCGGTCGCCGGCAGCCCGGTGAGGTTCTCAGGGGGAGACGCGGCGTTGAGCCGGAGCAGCAGTGGCCGTGGAGTGACGTCTTCGCCGCCGACGAC-GACGATGACGTCAGCGCCGCCATGGAGCAGTGCTACTATCATGGCATCTCTGAACCTCACTCCTCCAGCCTCACTGGATGATGGCAGCTTAGCTTCAGTCAAATTAATCACATGAGCTGCTATAATTGATTTCCATGAACTGATCCCCCNGAGGTCATCAACAT-CGAGAATATTAGTAGAGAAATTTTGCCAAAAAAAAAA]

[+] EMBL BI811903             [ATCACCGGCTGTCCGCATCGGCGGCAGCCGTCTGA CGCCTCCCCCGCCGACGTCATCGTCAGCCCAACAAGCAGCAGCATCGCGCC GCCGGCTCGGCCAGCAGCAACCACGCCGTCGCCAGGCAGCCGGCAGCCGCCGGCAACAACCATGGCCGGTCGCCGGCAGCCCGGTGAGGTTCTCAGGGGGAGACGCGGCGTTGAGCCGGAGCAGCAGTGGCCGTGGAGTGACGTCTTCGCCGCCGACGAC GACGATGACGTCAGCGCCGCCATGGAGCAGTGCTACTATCATGGCATCTCTGAACCTCACTCCTCCAGCCTCACTGGATGATGGCAGCTTAGCTTCAGTCAAATTAATCACATGAGCTGCTATAATTGATTTCCATGAACTGATCCCCCNGAGGTCATCAACAT CGAGAATATTAGTAGAGAAATTTTGCCAAAAAAAAAA]
[+] EMBL BI811938             [            CCGCATC GCGGCAG CGTC GACCCCCGCCGCGGCCGACGTCATCGTCAGCCCCACAAGCAGCAGCATCGCGCCGGCCGGCTCGGCCAGCAGCAACCACGCCGTCGCC GGC GCCGGCAGCCGCCGGCAACAACAATGGCC GTCGCCGGC G CCGGTGAGGTTCTCAGGGGGAGACGCGGCGTTGAGCCGGAGCAGCAGTGGCCGTGGAGTGACGTCTTCGCCGCCGACGACGGACGATGACGTCAGCGCCGCCATGGAGCAGTGCTACTATCATGGCATCTCTGAACCTCACTCCTCCAGCCTCACTGGATGATGGCAGCTTAGCTTCAGTCAAATTAATCA ATGAGCTGCTATAATTGATTTCCATGAACTGATCCCACAGAGGTCATCAACATCCGAGAATATTAGTAGAGAAATTTTGCAAAAAAAAAA ]




>consensus_13150#2
ATCACCGGCTGTCCGCATCGGCGGCAGCCGTCTGACGCCTCCCCCGCCGACGTCATCGTC
AGCCCAACAAGCAGCAGCATCGCGCCGCCGGCTCGGCCAGCAGCAACCACGCCGTCGCCA
GGCAGCCGGCAGCCGCCGGCAACAACCATGGCCGGTCGCCGGCAGCCCGGTGAGGTTCTC
AGGGGGAGACGCGGCGTTGAGCCGGAGCAGCAGTGGCCGTGGAGTGACGTCTTCGCCGCC
GACGACGACGATGACGTCAGCGCCGCCATGGAGCAGTGCTACTATCATGGCATCTCTGAA
CCTCACTCCTCCAGCCTCACTGGATGATGGCAGCTTAGCTTCAGTCAAATTAATCACATG
AGCTGCTATAATTGATTTCCATGAACTGATCCCCCNGAGGTCATCAACATCGAGAATATT
AGTAGAGAAATTTTGCCAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13150#1      TCTCGTTGGGCTAACGACGCGGCGATCGAGTAGCTTAGCTAGCTGAAGCTGC-CACATGA 59
consensus_13150#2      ------------------------------------------------------------
consensus_13150#0      -----------GAGTGGAGGAGGAGTCGGGTTCTTGCCGCGGCGGAGCTCGCACGCATGA 49
                                                                                   

consensus_13150#1      AGATCGGGTGCGACGCGTGCGAGCAGGCGGAGGCGGCGGTGCTGTGCTGCGCCGACGAGG 119
consensus_13150#2      ------------------------------------------------------------
consensus_13150#0      AGCTACTGTGCAGCGCGTGCGAGGCGGCGGAGGCCAGCGTCCTCTGCTGCGCCGACGAGG 109
                                                                                   

consensus_13150#1      CCGCGCTCTGCCGCCGCTGCGACGCCGCCGTCCACTCCGCCAACAGGCTCGCCGGCAAGC 179
consensus_13150#2      ------------------------------------------------------------
consensus_13150#0      CCGCCCTGTGCGCGCGCTGCGACCGCGACATCCACGCCGCCAACCGCCTCGCCGGGAAGC 169
                                                                                   

consensus_13150#1      ACACCCGCGTCGCGCTCCTCCTCCCCTCCTCCTCCTCCGCCGCCGCCGGCGACG------ 233
consensus_13150#2      ------------------------------------------------------------
consensus_13150#0      ACCTCCGCCTCCCTCTCCTCTCCCCCGCCTCCTCCTCCTCCTCCTCCGCCGCCGCCCTCG 229
                                                                                   

consensus_13150#1      -ACGACCACCACC--------CCACCTGCGACATCTGCCAGGAGAAGACGGGCTACTTCT 284
consensus_13150#2      ------------------------------------------------------------
consensus_13150#0      CGCCGCCGCCGCCGTCGCCGCCCAAGTGCGACATATGCCAGGAGAGCCACGCGTACTTCT 289
                                                                                   

consensus_13150#1      TCTGCCTCGAGGACCGCGCCCTGCTCTGCCGGAGCTGCGACGTCGCCGTCCACACCGCCA 344
consensus_13150#2      ------------------------------------------------------------
consensus_13150#0      TCTGCCTCGAGGACCGCGCGCTGCTGTGCCGGAGCTGCGACGTGGCGGTGCACACGGCCA 349
                                                                                   

consensus_13150#1      CTGCGCACGCCGCCGCCCACCGCCGCTTCCTCATCACCGGC-GTCCGCATCGG-CGGCAG 402
consensus_13150#2      --------------------------------ATCACCGGCTGTCCGCATCGG-CGGCAG 27
consensus_13150#0      ACGCCTTCGTCTCCGCGCACCGCCGTTTCCTCCTCACCGGC-GTGCAGGTCGGGCAGGAG 408
                                                        ******** ** *   **** * * **

consensus_13150#1      C--GTCGACGCCGCCGCC--GCGGCCGACGTCATCGTCAGCCCAACAAGCAGCAGCATCG 458
consensus_13150#2      CC-GTC--TGACGCCTCC--CCCGCCGACGTCATCGTCAGCCCAACAAGCAGCAGCATCG 82
consensus_13150#0      CAGGACGAGCACTCCCCTGACCCGCCTGAGCCGTCTCCTCCTCCGCC-GCCGCCGCCGCC 467
                       *  * *     * ** *    * ***   * * **  *  * *  *  ** ** **  * 

consensus_13150#1      CGCCGGCCGGCTCGGCCAGCAGCAACCACGCCGGCGCC------------------GCCG 500
consensus_13150#2      CGCCG-CCGGCTCGGCCAGCAGCAACCACGCCGTCGCCAGGCAGCCGGCAG---CCGCCG 138
consensus_13150#0      TGCATCCAAGAGCGACCACCCGGCGCCGCTCTACGGCGAGGGCGGAGGAGGGTTCAGCTG 527
                        **   *  *  ** *** * *   ** * *    **                   ** *

consensus_13150#1      G--CAACAACAA-TGGCCGGTCGCCGGCG--CCGGTGAGGTTCTCAGGGGGAGACGG--- 552
consensus_13150#2      G--CAACAACCA-TGGCCGGTCGCCGGCAGCCCGGTGAGGTTCTCAGGGGGAGACG---- 191
consensus_13150#0      GGACGCCGCCGACTCGCCGGCCGCGGGCGGCCTCCCCGACTGGTCGGCCGTCGTCGACCA 587
                       *  *  *  * * * ***** *** ***   *        *  ** *  *  * **    

consensus_13150#1      ---CGGCGTTGAGCCGGAGCAGCAGTG-------GCCGTGGA-GTGACGTCTTCGCCGCC 601
consensus_13150#2      ---CGGCGTTGAGCCGGAGCAGCAGTG-------GCCGTGGA-GTGACGTCTTCGCCGCC 240
consensus_13150#0      GTTCGGCTCCCCGCCGCCGCCGCGCCACACGGACACCGCGACCGTGACGACCCCGCCGCC 647
                          ****     ****  ** **            *** *   ****** *  *******

consensus_13150#1      GACGACGACGATGACGTCAGCGCCGCCATGGAGCAGTGCTACTATCATGGCATCTCTGAA 661
consensus_13150#2      GACGACGACGATGACGTCAGCGCCGCCATGGAGCAGTGCTACTATCATGGCATCTCTGAA 300
consensus_13150#0      GACCAAGAGGAGCCCACGCGCGCCGGCGTTCGGCGGCCAGGGCGGCATGATGGATTGGCC 707
                       *** * ** **   *    ****** * *   ** *         ****     *  *  

consensus_13150#1      CCTCA-------CTCCTCCAGCCTCACTGGAT--GATGGCAGCTT-AGCTTCAGTCAAAT 711
consensus_13150#2      CCTCA-------CTCCTCCAGCCTCACTGGAT--GATGGCAGCTT-AGCTTCAGTCAAAT 350
consensus_13150#0      CCTCGGCGAGTTCTTCGGCGGCTTCACCGACTTCACCGGCGGCTTTGGCTTCGGCTTCGG 767
                       ****        ** *  * ** **** *  *     *** ****  ***** *      

consensus_13150#1      TAATTA-ATGAGCTGCTATAATTGATTTCCATGAACTGATCC----CACAGAGGTCATCA 766
consensus_13150#2      TAATCACATGAGCTGCTATAATTGATTTCCATGAACTGATCC----CCCNGAGGTCATCA 406
consensus_13150#0      CGA-CAGTGGCACCTCCAAGGCTGACAGCGGGAAGCTGGGAGGGAGCACGGACGGC-TCG 825
                         *  *   *  *  * *    ***   *    * ***        * * ** * * ** 

consensus_13150#1      ACATCGAG---------------------------------------------------- 774
consensus_13150#2      ACATCGAGAATATTAGTAGAGAAATTTTGCCAAAAAAAAAA------------------- 447
consensus_13150#0      CCGTACTACCGGTCGTCATCGGAAGATGACCGGAACGCCGACGAGCTCTTCGGGCAGGTA 885
                        * *                                                        

consensus_13150#1      ------------------------------------------------------------
consensus_13150#2      ------------------------------------------------------------
consensus_13150#0      CCAGAGATCCAGTGGTCGGTGCCGGAGCTCCCCTCGCCGCCGACGGCCTCCGGCCTCCAC 945
                                                                                   

consensus_13150#1      ------------------------------------------------------------
consensus_13150#2      ------------------------------------------------------------
consensus_13150#0      TGGCAACGCCATCCAGCCGCCACTCACGGCGGCGGCGGCGGCGGACCCGACACCACCGCC 1005
                                                                                   

consensus_13150#1      ------------------------------------------------------------
consensus_13150#2      ------------------------------------------------------------
consensus_13150#0      TTCGTCCCCGACATCTGCTCCCCCGACAGCTGCTTCCCGGCCACCACCTCCAAACGCCGG 1065
                                                                                   

consensus_13150#1      ------------------------------------------------------------
consensus_13150#2      ------------------------------------------------------------
consensus_13150#0      AGGCAATAATGCTAGCTAGCTAATAGCTATGTCCAGAGGTTGAAGACGACGACGACGACG 1125
                                                                                   

consensus_13150#1      ------------------------------------------------------------
consensus_13150#2      ------------------------------------------------------------
consensus_13150#0      ACGACCAGCCATGTGAGTGTGACTGCGATTGCTAATAGCTCGAGACGCTGACGTGATCGT 1185
                                                                                   

consensus_13150#1      ------------------------------------------------------------
consensus_13150#2      ------------------------------------------------------------
consensus_13150#0      GTGTGGTACCACCTTTCATGGCGATGGCGCCAACTACAATGTTAGGTAGGAGAAGCTTTC 1245
                                                                                   

consensus_13150#1      ------------------------------------------------------------
consensus_13150#2      ------------------------------------------------------------
consensus_13150#0      TACTCGTCTGGTGGTTGGTTGGTTGGTTGTTGACGATGATGATCTGTTGCCATTTCCGGC 1305
                                                                                   

consensus_13150#1      ------------------------------------------------------------
consensus_13150#2      ------------------------------------------------------------
consensus_13150#0      GACATCGAGGCGGAAACAGATCTCTCTGATTTTGAGTGCCTGACATATGGGTTTCATGTC 1365
                                                                                   

consensus_13150#1      ------------------------------------------------------------
consensus_13150#2      ------------------------------------------------------------
consensus_13150#0      TAATGGGTTCTTATATTAGCGACCCACATTAGCAGTATTGTAGAGAAGACTTGTTGAAAA 1425
                                                                                   

consensus_13150#1      ------------------------------------------------------------
consensus_13150#2      ------------------------------------------------------------
consensus_13150#0      CAGCCGCAATCAGCATTGGCTGACAAATACAGTTGGGGGAGATCGATGGAACTACAGTGT 1485
                                                                                   

consensus_13150#1      ------------------------------------------------------------
consensus_13150#2      ------------------------------------------------------------
consensus_13150#0      ACAGTCTATGCTCTGCAGCATCTGATTCTGATCCTGAAGTCTGGAAAGAGGAAGAAGAAG 1545
                                                                                   

consensus_13150#1      ------------------------------------------------------------
consensus_13150#2      ------------------------------------------------------------
consensus_13150#0      ATTAGAAAGAAGAGAGGCCTCTGCTTTTTCGATGGCCGAAACTGAGATGCACCTCGCTAA 1605
                                                                                   

consensus_13150#1      ------------------------------------------------------------
consensus_13150#2      ------------------------------------------------------------
consensus_13150#0      TTGGTGGGCAGTGGACAGGATAGGATAGGGGCCATGTGATGGATTGATGGTGATGCTCTA 1665
                                                                                   

consensus_13150#1      ------------------------------------------------------------
consensus_13150#2      ------------------------------------------------------------
consensus_13150#0      CTTTGTTCAGAACAGAAGTCTCTGAATTTTGGTTGGATCACAGAAACTTGTAAAAGATTC 1725
                                                                                   

consensus_13150#1      ------------------------------------------------------------
consensus_13150#2      ------------------------------------------------------------
consensus_13150#0      TTGCATGTGTACAGAAGTTTTATACTACAGTAGTTAGATAGAAACATGGATGGATCCGTG 1785
                                                                                   

consensus_13150#1      ------------------------------------------------------------
consensus_13150#2      ------------------------------------------------------------
consensus_13150#0      AGAAAAGAAAAATGCTGGTAATGTTGTATTGTACTAGTAAAAGAAAATGTTATATGTTTT 1845
                                                                                   

consensus_13150#1      ----------------
consensus_13150#2      ----------------
consensus_13150#0      TAACTCGGCTGATTCA 1861