cluster # 13184

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Oryza sativa
cluster # 13184 cluster # 13184 Sequences # 12 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13184#0 length = 1565 sequences # 9
consensus_13184#1 length = 607 sequences # 1

consensus_13184#2 length = 525 sequences # 1
consensus_13184#3 length = 521 sequences # 1

consensusID : consensus_13184#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 1565
fasta sequence

                              [ACCTAAATGTTGTTAGGAAGTGAGGACTGAGCTTTCCTCTCCTTCACTCGTACTGTTTCTGATATCATTGATTGCTATCCTCCTCCTCCTCCTTCCTCCCCTAAATCTCTAGAGAAATGGAGGACAATCTACCAGTCAATGTCCGGGAGTATCAAGAACTCGCCAAAAAAGCGTTGCCAAAGATGGCTTATGATTACATCAATGGGGGAGCAGAGGATGAGCACACACTGAGGGAGAATATCGCAGCATACACAAGAATTATATTACGACCTCGCGTTCTTGTGGATGTGAGCAAGATAGACATGTCAACAACTTTATTA-GGATACACCATGCGTTCACCCATAATTGTGGCTCCAAC-TGGGGGGCACAAA-TTAGCACATCCAGAAGGGGAGAAGGCTACAGCAAGAGCTGCAGCATCATGTAACGCCATAATGGTTCTTTCCTTTTCTTCCAGTTGCAAGATTGAGGATGTTGCCTCCAGATGCAATGCCATT-CGCTTTTATCAGCTATATGTGTATAAGAATAGGAATGTTTCAGCAACATTATTACGGCGGGCCGAGAGTTGTGGATTCAAGGCACTTCTTTTGACAGTTGACACTCCTATGCTCGGTCGGCGTGAAGCAGATATCCGAAACAAAATGGTTTTCCCACGGAGTGGTAATCTCGAAGGTTTAATGACAACAGATGACCATGATACCACAAACGGTTCTCAGCTCGAACGATTCGCACGAGCGACGCTGGATCCATCATTATCATGGAAGGATATAGAGTGGCTCAAGTCCATAACCAGCATGCCGATCTTTCTCAAGGGCATCGTCACCGCTGAGGACGCGAGGAGAGCAGTGGAGGCCGGGGTGGCCGGCGTGATCGTCTCCAACCACGGCGCGCGGCAGCTGGACTACGCGCCGGCGACCATCGCCGCCCTGGAAGAGGTGGTCAGGGCGGTGGCCGGCGCCGTGCCGGTGCTGGTCGACGGCGGAATCCGGCGAGGCACTGACGTGTTCAAGGCCCTGGCGCTCGGCGCACGGGCGGTCATGGTTGGGAGGCCGGTGTTCTTCGGGCTGGCGGCGAGGGGGGAGGCAGGCGCGAGGCACGTGATCGAGATGCTCAACGGCGAGCTGGAGGTGGCCATGGCGCTCTGCGGCTGCCGGAGCGTCGGCGAGATCACCCGCAGCCATGTCATGACCGAGGGTGACAGGATCAGGTCCCTGCTCTGATGAATCATTTCTCATCTGGCCAATGCAGCTTCAGGTCT-AAAAATACAAGTGGGCTATGGGCCAACCCGTAAACCGATTTATAGGTAATAAAATTTGACCGACCCGTGAATCTATTTATATGTAAAATTAGTGGGTAATCCAAAGTCTACTTATTTGGTCTATAACTATAAGTGGCTTCGC-GGATCAGTCCAGTTACATCATATTCAGGTCTCAATGTGAGAGACTTTAGTATATGCAGTATATTGCAATTGGATTTATGGATAACGGGTAGTAACATGGTTGATGAAATGGTGAATAATTGAGCTGGAAGGTTAGCAGATTACCATATGCTACAGAAAAAGTAAAGGA]

[+] EMBL C72544               [ACCTAAATGTTGTTAGGAAGTGAGGACTGAGCTTTCCTCTCCTTCACTCGTACTGTTTCTGATATCATTGATTGCTATCCTCCTCCTCCTCCTTCCTCCCCTAAATCTCTAGAGAAATGGAGGACAATCTACCAGTCAATGTCCGGGAGTATCAAGAACTCGCCAAAAAAGCGTTGCCAAAGATGGCTTATGATTACATCAATGGGGGAGCAGAGGATGAGCACACACTGAGGGAGAATATCGCAGCATACACAAGAATTATATTACGACCTCGCGTTCTTGTGGATGTGAGCAAGATAGACATGTCAACAACTTTATTAGGGATACACCATGCGTTCACCCATAATTGTGGCTCCAACTTGGGGGGCACAAATTTNGCACATCCAGAAGGGGAGAAGGTTCCAGCAAG GCTNCAGCATCATGTACCG CATAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CB642726             [             TAAGCAGTGAAGACTGAGCTTTCCTCTCCTTCACTCGTACTGTTTCTGATATCATTGATTGCTATCCTCCTCCTCCTCCTTCCTCACCTAAATCTCTATAGAAATGGAGGACAATCTACCATTCAATGTCCGGGAGTATCAAGAACTCCCCAAAAAAGCGTTGCCAAAGATGGCTTATGATTACATCAATGGGGGACCAAAAGATGAGCACACACTGACGGATAATATCTCAGCATACACAAGAATTATATTACGACCTCCCGTTCTTGTGGATGTGAGCAAAATAAACATGTCAACAACTTTATTA CGATACACCATGCGATCACCCATAATTGTGGCTCCAAC TGGGGGGCACAAA TTACCACATCCACAAGGGGAGAAAGCTACACCAACAGCTGCATCATCATGTAACGCCATAATGGTTCTTTCCTTTTCTTCCAGTTGCAATATTGAGGATGTTGCCTCCAGATGCAATGCCATT CGCTTTTATCATCTATATGTGTATAAGAATACGAATGTTTCACCAACATTATTACAGCGAGCCGAGAGTTGTGGATTCAAGGCACTTCTTTTGACAGTTGACACTCCTATGCTCGGTCGGCGTGAATCAGATATCCCAAACAAAATGGTTATCCCACGGAGTGGTAATCTCGAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AK071738             [                                                     TGTTTCTGATATCATTGATTGCTATCCTCCTCCTCCTCCTTCCTCCCCTAAATCTCTAGAGAAATGGAGGACAATCTACCAGTCAATGTCCGGGAGTATCAAGAACTCGCCAAAAAAGCGTTGCCAAAGATGGCTTATGATTACATCAATGGGGGAGCAGAGGATGAGCACACACTGAGGGAGAATATCGCAGCATACACAAGAATTATATTACGACCTCGCGTTCTTGTGGATGTGAGCAAGATAGACATGTCAACAACTTTATTA GGATACACCATGCGTTCACCCATAATTGTGGCTCCAAC TGGGGGGCACAAA TTAGCACATCCAGAAGGGGAGAAGGCTACAGCAAGAGCTGCAGCATCATGTAACGCCATAATGGTTCTTTCCTTTTCTTCCAGTTGCAAGATTGAGGATGTTGCCTCCAGTTGCAATGCCATT CGCTTTTATCAGCTATATGTGTATAAGAATAGGAATGTTTCAGCAACATTAGTACGGCGGGCCGAGAGTTGTGGATTCAAGGCACTTCTTTTGACAGTTGACACTCCTATGCTCGGTCGGCGTGAAGCAGATATCCGAAACAAAATGGTTTTCCCACGGAGTGGTAATCTCGAAGGTTTAATGACAACAGATGACCATGATACCACAAACGGTTCTCAGCTCGAACGATTCGCACGAGCGACGCTGGATCCATCATTATCATGGAAGGATATAGAGTGGCTCAAGTCCATAACCAGCATGCCGATCTTTCTCAAGGGCATCGTCACCGCTGAGGACGCGAGGAGAGCAGTGGAGGCCGGGGTGGCCGGCGTGATCGTCTCCAACCACGGCGCGCGGCAGCTGGACTACGCGCCGGCGACCATCGCCGCCCTGGAAGAGGTGGTCAGGGCGGTGGCCGGCGCCGTGCCGGTGCTGGTCGACGGCGGAATCCGGCGAGGCACTGACGTGTTCAAGGCCCTGGCGCTCGGCGCACGGGCGGTCATGGTTGGGAGGCCGGTGTTCTTCGGGCTGGCGGCGAGGGGGGAGGCAGGCGCGAGGCACGTGATCGAGATGCTCAACGGCGAGCTGGAGGTGGCCATGGCGCTCTGCGGCTGCCGGAGCGTCGGCGAGATCACCCGCAGCCATGTCATGACCGAGGGTGACAGGATCAGGTCCCTGCTCTGATGAATCATTTCTCATCTGGCCAATGCAGCTTCAGGTCT AAAAATACAAGTGGGCTATGGGCCAACCCGTAAACCGATTTATAGGTAATAAAATTTGACCGACCCGTGAATCTATTTATATGTAAAATTAGTGGGTAATCCAAAGTCTACTTATTTGGTCTATAACTATAAGTGGCTTCGC GGATCAGTCCAGTTACATCATATTCAGGTCTCAATGTGAGAGACTTTAGTATATGCAGTATATTGCAATT                                                                                                  ]
[+] EMBL CB683588             [                                                                                                                                  ACCACTCAATGTCCGGGAGTATCAAGAACTCGCCAAAAAAGCGTTGCCAAAGATGGCTTATGATTACATCAATGGGGGAGCAGAGGATGAGCACACACTGAGGGAGAATATCGCAGCATACACAAGAATTATATTACGACCTCTCGTTCTTGTGGATGTGAGCAAGATACACATGTCAACAACTTTATTA GGATACACCATGCGTTCACCCATAATTGTGGCTCCAAC TGGGGGGCACAAA TTAACACATCCAGAAGGGGAGAAGGCTACAGCAAGAGCTGCAGCATCATGTAACGCCATAATGGTTCTTTCCTTTTCTTCCAGTTGCAAGATTGAGGATGTTGCCTCCAGATGCAATGCCATTGCGCTTTTATCAGCTATATGTGTATAAGAATAGGAATGTTTCAACAACATTATTACGGCGGGCCGAGAGTTGTGGATTCAAGGCACTTCTTTTGACAGTTGACACTCCTATGCTCGGTCGGCGTGAAGCAGATATCCGAAACAAAATGGTTTTCCCACGGAGTGGTAATCTCGAAGGTTTAATGACAACAGATGACCATGATACCACAAACGGGTCTCAGCTCGAACGATTCGCACGAGCGACGCTGGATCCATCATTATCATGGAAGGATATAGAGTGGCTCAAGTCCATAACCAGCATGCCGATCTTTCTCAAGGGCATCGTCACCGCTGAGGACGCna                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CB642727             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GCACTTCTTTTGACAGTTGACACTCCTATGCTCGGTCGGCGTGAAGCAGATATCCGAAACAAAATGGTTTTCCCACGGAGTGGTAATCTCGAAGGTTTAATGACAACAGATGACCATGATACCACAAACGGTTCTCAGCTCGAACGATTCGCACGAGCGACGCTGGATCCATCATTATCATGGAAGGATATAGAGTGGCTCAAGTCCATAACCAGCATGCCGATCTTTCTCAAGGGCATCGTCACCGCTGAGGACGCGAGGAGAGCAGTGGAGGCCGGGGTGGCCGGCGTGATCGTCTCCAACCACGGCGCGCGGCAGCTGGACTACGCGCCGGCGACCATCGCCGCCCTGGAAGAGGTGGTCAGGGCGGTGGCCGGCGCCGTGCCGGTGCTGGTCGACGGCGGAATCCGGCGAGGCACTGACGTGTTCAAGGCCCTGGCGCTCGGCGCACGGGCGGTCATGGTTGGGAGGCCGGTGTTCTTCGGGCTGGCGGCGAGGGGGGAGGCAGGCGCGAGGCACGTGATCGAGATGCTCAACGGCGAGCTGGAGGTGGCCATGGCGCTCTGCGGCTGCCGGAGCGTCGGCGAGATCACCCGCAGCCATGTCATGACCGAGGGTGACAGGATCAGGTCCCTGCTCTGATGAATCATTTCTCATCTGGCCAATGCAGCTTCAGGTCT AAAAATGGAAGTGGGCTATGGGCCAACCCGTAAACCGATTTATAGGTAATAAAATTTGACCGACCCGTGAATTTATAAGTATGTAAAATTAGTGGGTAA                                                                                                                                                                                                                    ]
[-] EMBL CB683181             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     AGGAGAGCAGTGGAGGCCGGGTTGGCCGGCGTGATCGTCTCCAACCACGGCGCGCGGCAGCTGGACTACGCGCCGGCGACCATCGCCGCCCTGGAAGAGGTGGTCAGGGCGGTGGCCGGCGCCGTGCCGGTGCTGGTCGACGGCGGAATCCGGCGAGGCACTGACGTGTTCAAGGCCCTGGCGCTCGGCGCACGGGCGGTCATGGTTGGGAGGCCGGTGTTCTTCGGGCTGGCGGCGAGGGGGGAGGCAGGCGCGAGGCACGTGATCGAGATGCTCAACGGCGAGCTGGAGGTGGCCATGGCGCTCTGCGGCTGCCGGAGCGTCGGCGAGATCACCCGCAGCCATGTCATGACCGAGGGTGACAGGATCAGGTCCCTGCTCTGATGAATCATTTCTCATCTGGCCAATGCAGCTTCAGGTCT AAAAATACAAGTGGGCTATGGGCCAACCCGTAAACCGATTTATAGGTAATAAAATTTGACCGACCCGTGAATCTATTTATATGTAAAATTAGTGGGTAATCCAAAGTCTACTTATTTGGTCTATAACTATAAGTGGCTTCGC GGATCAGTCCAGTTACATCATATTCAGGTCTCAATGTGAGAGACTTTAGTATATGCAGTATATTGCAATTGGATTTATGGATAACGGGTAGTAACATGGTTGATGAAATGGTGAATAATTGAGCTGGAAGGTTAGCAGATTACCATATGCTACAGAAAAAGTAAAGGA]
[+] EMBL AU093995             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GGCG CGTGCCGGTGCTGGTCGACGGCGGAATCCGGCGAGG NCTGACGTGTTCAAGGCCCTGGCGCTCGGCGCACGGGCGGTCATGGTTGGGAGGCCGGTGTTCTTCGGGCTGGCGGCGAGGGGGGAGGCAGGCGCGAGGCACGTGATCGAGATGCTCAACGGCGAGCTGGAGGTGGCCATGGCGCTCTGCGGCTGCCGGAGCGTCGGCGAGATCACCCGCAGCCATGTCATGACCGAGGGTGACAGGATCAGGTCCCTGCTCTGATGAATCATTTCTCATCTGGCCAATGCAGCTTCAGGTCT AAAAATACAAGTGGGCTATGGGCCAACCCGTAAACCGATTTATAGGTAATAAAATTTGACCGACCCGTGAATCTATTTATATGTAAAATTAGTGGGTAATCCAAAGTCTACTTATTTGGTCTATAACTATAAGT GNTTCGC GGATCAGTCCAGTTACATCATATTCAGGTCTCAATGTGAGAGACTTTAGTATATGCAGTATATTGCAATTGGATTTATGGATAACGGGTAGTAACATGGTTGATGAAATGGTGAATAATTGAGCTTTAAGGTTAaaaa                              ]
[-] EMBL CB967248             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GCGAGGCACTGACGTGTTCAAGGCCCTGGCGCTCGGCGCACGGGCGGTCATGGTTGGGAGGCCGGTGTTCTTCGGGCTGGCGGCGAGGGGGGAGGCAGGCGCGAGGCACGTGATCGAGATGCTCAACGGCGAGCTGGAGGTGGCCATGGCGCTCTGCGGCTGCCGGAGCGTCGGCGAGATCACCCGCAGCCATGTCATGACCGAGGGTGACAGGATCAGGTCCCTGCTCTGATGAATCATTTCTCATCTGGCCAATGCAGCTTCAGGTCTAAAAAATACAAGTGGGCTATGGGCCAACCCGTAAACCGATTTATAGGTAATAAAATTTGACCGACCCGTGAATCTATTTATATGTAAAATTAGTGGGTAATCCNAGGCCTACTTATTTGGTCTATAACTATAAGTGGCTTCGC GGATCAGTCCAGTTACATCATATTC GGTCTCAATGTGAGAGAC                                                                                                                            ]
[-] EMBL AU181018             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GGCTATGGGCCAANCCGTAAACCGATTTATAGGTAATAAAATTTGACCGACCCGTNAATCTATTTATATGTAAAATTAGTGGGTAATCCAAAGTCTNCTTANNTGGTCTATAACTATAAGTGGCTTCACTGGATCAGTCCAGTTACNTCATATTCAGGTNTCAATGTGANAGGNTTTAGTA                                                                                                                     ]




>consensus_13184#0
ACCTAAATGTTGTTAGGAAGTGAGGACTGAGCTTTCCTCTCCTTCACTCGTACTGTTTCT
GATATCATTGATTGCTATCCTCCTCCTCCTCCTTCCTCCCCTAAATCTCTAGAGAAATGG
AGGACAATCTACCAGTCAATGTCCGGGAGTATCAAGAACTCGCCAAAAAAGCGTTGCCAA
AGATGGCTTATGATTACATCAATGGGGGAGCAGAGGATGAGCACACACTGAGGGAGAATA
TCGCAGCATACACAAGAATTATATTACGACCTCGCGTTCTTGTGGATGTGAGCAAGATAG
ACATGTCAACAACTTTATTAGGATACACCATGCGTTCACCCATAATTGTGGCTCCAACTG
GGGGGCACAAATTAGCACATCCAGAAGGGGAGAAGGCTACAGCAAGAGCTGCAGCATCAT
GTAACGCCATAATGGTTCTTTCCTTTTCTTCCAGTTGCAAGATTGAGGATGTTGCCTCCA
GATGCAATGCCATTCGCTTTTATCAGCTATATGTGTATAAGAATAGGAATGTTTCAGCAA
CATTATTACGGCGGGCCGAGAGTTGTGGATTCAAGGCACTTCTTTTGACAGTTGACACTC
CTATGCTCGGTCGGCGTGAAGCAGATATCCGAAACAAAATGGTTTTCCCACGGAGTGGTA
ATCTCGAAGGTTTAATGACAACAGATGACCATGATACCACAAACGGTTCTCAGCTCGAAC
GATTCGCACGAGCGACGCTGGATCCATCATTATCATGGAAGGATATAGAGTGGCTCAAGT
CCATAACCAGCATGCCGATCTTTCTCAAGGGCATCGTCACCGCTGAGGACGCGAGGAGAG
CAGTGGAGGCCGGGGTGGCCGGCGTGATCGTCTCCAACCACGGCGCGCGGCAGCTGGACT
ACGCGCCGGCGACCATCGCCGCCCTGGAAGAGGTGGTCAGGGCGGTGGCCGGCGCCGTGC
CGGTGCTGGTCGACGGCGGAATCCGGCGAGGCACTGACGTGTTCAAGGCCCTGGCGCTCG
GCGCACGGGCGGTCATGGTTGGGAGGCCGGTGTTCTTCGGGCTGGCGGCGAGGGGGGAGG
CAGGCGCGAGGCACGTGATCGAGATGCTCAACGGCGAGCTGGAGGTGGCCATGGCGCTCT
GCGGCTGCCGGAGCGTCGGCGAGATCACCCGCAGCCATGTCATGACCGAGGGTGACAGGA
TCAGGTCCCTGCTCTGATGAATCATTTCTCATCTGGCCAATGCAGCTTCAGGTCTAAAAA
TACAAGTGGGCTATGGGCCAACCCGTAAACCGATTTATAGGTAATAAAATTTGACCGACC
CGTGAATCTATTTATATGTAAAATTAGTGGGTAATCCAAAGTCTACTTATTTGGTCTATA
ACTATAAGTGGCTTCGCGGATCAGTCCAGTTACATCATATTCAGGTCTCAATGTGAGAGA
CTTTAGTATATGCAGTATATTGCAATTGGATTTATGGATAACGGGTAGTAACATGGTTGA
TGAAATGGTGAATAATTGAGCTGGAAGGTTAGCAGATTACCATATGCTACAGAAAAAGTA
AAGGA

consensusID : consensus_13184#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 607
fasta sequence

                              [CTCGTACTGTTTCTGCTATCATTGATTGCTATCCTCCTCCTCCTTCCTCCCCTAAATCTCTAGAGAAATGGAGGACAATCTACCAGTCAATGTCCGGGAGTATCAAGAACTCGCCAAAAAAGCGTTGCCAAAGATGGCTTATGATTACATCAATGGGGGAGCAGAGGATGAGCACACACTGAGGGAGAATATCGCAGCATACACAAGAATTATATTACGACCTCGCGTTCTTGTGGATGTGAGCAAGATAGACATGTCAACAACTTTATTAGGATACACCATGCGTTCACCCATAATTGTGGCTCCAACTGGGGGGCACAAATTAGCACATCCAGAAGGGGAGAAGGCTACAGCAAGAGCTGCAGCATCATGTAACGCCATAATGTTGCAAGATTGAGGATGTCGCCTCCAGTTGCAATGCCATTCGCTTTTATCAGCTATATGTGTATAAGAATAGGAATGTTTCAGCAACATTAGTACGGCGGGCCGAGAGTTGTGGATTCAAGGCACTTCTTTTGACAGTTGACACTTCTATGCTCGGTCGGCGTGAAGCAGATATCCGAAACAAAATGGNTTTCCCACGGAGTGGTAATCTCGAANGGTTAAT]

[+] EMBL CA764333             [CTCGTACTGTTTCTGCTATCATTGATTGCTATCCTCCTCCTCCTTCCTCCCCTAAATCTCTAGAGAAATGGAGGACAATCTACCAGTCAATGTCCGGGAGTATCAAGAACTCGCCAAAAAAGCGTTGCCAAAGATGGCTTATGATTACATCAATGGGGGAGCAGAGGATGAGCACACACTGAGGGAGAATATCGCAGCATACACAAGAATTATATTACGACCTCGCGTTCTTGTGGATGTGAGCAAGATAGACATGTCAACAACTTTATTAGGATACACCATGCGTTCACCCATAATTGTGGCTCCAACTGGGGGGCACAAATTAGCACATCCAGAAGGGGAGAAGGCTACAGCAAGAGCTGCAGCATCATGTAACGCCATAATGTTGCAAGATTGAGGATGTCGCCTCCAGTTGCAATGCCATTCGCTTTTATCAGCTATATGTGTATAAGAATAGGAATGTTTCAGCAACATTAGTACGGCGGGCCGAGAGTTGTGGATTCAAGGCACTTCTTTTGACAGTTGACACTTCTATGCTCGGTCGGCGTGAAGCAGATATCCGAAACAAAATGGNTTTCCCACGGAGTGGTAATCTCGAANGGTTAAT]




>consensus_13184#1
CTCGTACTGTTTCTGCTATCATTGATTGCTATCCTCCTCCTCCTTCCTCCCCTAAATCTC
TAGAGAAATGGAGGACAATCTACCAGTCAATGTCCGGGAGTATCAAGAACTCGCCAAAAA
AGCGTTGCCAAAGATGGCTTATGATTACATCAATGGGGGAGCAGAGGATGAGCACACACT
GAGGGAGAATATCGCAGCATACACAAGAATTATATTACGACCTCGCGTTCTTGTGGATGT
GAGCAAGATAGACATGTCAACAACTTTATTAGGATACACCATGCGTTCACCCATAATTGT
GGCTCCAACTGGGGGGCACAAATTAGCACATCCAGAAGGGGAGAAGGCTACAGCAAGAGC
TGCAGCATCATGTAACGCCATAATGTTGCAAGATTGAGGATGTCGCCTCCAGTTGCAATG
CCATTCGCTTTTATCAGCTATATGTGTATAAGAATAGGAATGTTTCAGCAACATTAGTAC
GGCGGGCCGAGAGTTGTGGATTCAAGGCACTTCTTTTGACAGTTGACACTTCTATGCTCG
GTCGGCGTGAAGCAGATATCCGAAACAAAATGGNTTTCCCACGGAGTGGTAATCTCGAAN
GGTTAAT

consensusID : consensus_13184#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 525
fasta sequence

                              [TGCTCTGTCGCTTGAACAAATATCCGAACAAATGGTTTTCCCCACCGGAGTGGTAATCTCTAAGTTTAATCACACATAGATGACCCATGATACCACAAAACGGTTCTCAGCTCGAACGATTCGCACGAGCGACCTGGATCCATCATTATCATGGAAGGATATAGAGTGGCTCAAGTCCATAACCAGCATGCCGATCTTTCTCCAAGGGCATCGTCACCGCTGAGGACGGTAATTACTCCAGTTCATCCATCATCTTGGTCACTGAATAATTCACTGTCATGCATGTTAAATATATGTGATCCGAATTTTGGGCTCATAGTATATTCGTATTAGTTATGTAATAGACTCTACTTTATAGGATTAGTTTCCTATTAGGACTCCTAGATTTCTCCTATATATATCCCTTATAAGCCGCACCAGGGAGGGTGCGATAGCCCAATGTATTCCCTGCGTTTGTATCCAACTCTTCTATAGTGATCATTGCCGGTCGGCGCCCGTGGTTTTCTCCCGCCAAGGGTTTTCCAC]

[+] EMBL BI806447             [TGCTCTGTCGCTTGAACAAATATCCGAACAAATGGTTTTCCCCACCGGAGTGGTAATCTCTAAGTTTAATCACACATAGATGACCCATGATACCACAAAACGGTTCTCAGCTCGAACGATTCGCACGAGCGACCTGGATCCATCATTATCATGGAAGGATATAGAGTGGCTCAAGTCCATAACCAGCATGCCGATCTTTCTCCAAGGGCATCGTCACCGCTGAGGACGGTAATTACTCCAGTTCATCCATCATCTTGGTCACTGAATAATTCACTGTCATGCATGTTAAATATATGTGATCCGAATTTTGGGCTCATAGTATATTCGTATTAGTTATGTAATAGACTCTACTTTATAGGATTAGTTTCCTATTAGGACTCCTAGATTTCTCCTATATATATCCCTTATAAGCCGCACCAGGGAGGGTGCGATAGCCCAATGTATTCCCTGCGTTTGTATCCAACTCTTCTATAGTGATCATTGCCGGTCGGCGCCCGTGGTTTTCTCCCGCCAAGGGTTTTCCAC]




>consensus_13184#2
TGCTCTGTCGCTTGAACAAATATCCGAACAAATGGTTTTCCCCACCGGAGTGGTAATCTC
TAAGTTTAATCACACATAGATGACCCATGATACCACAAAACGGTTCTCAGCTCGAACGAT
TCGCACGAGCGACCTGGATCCATCATTATCATGGAAGGATATAGAGTGGCTCAAGTCCAT
AACCAGCATGCCGATCTTTCTCCAAGGGCATCGTCACCGCTGAGGACGGTAATTACTCCA
GTTCATCCATCATCTTGGTCACTGAATAATTCACTGTCATGCATGTTAAATATATGTGAT
CCGAATTTTGGGCTCATAGTATATTCGTATTAGTTATGTAATAGACTCTACTTTATAGGA
TTAGTTTCCTATTAGGACTCCTAGATTTCTCCTATATATATCCCTTATAAGCCGCACCAG
GGAGGGTGCGATAGCCCAATGTATTCCCTGCGTTTGTATCCAACTCTTCTATAGTGATCA
TTGCCGGTCGGCGCCCGTGGTTTTCTCCCGCCAAGGGTTTTCCAC

consensusID : consensus_13184#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 521
fasta sequence

                              [GCCGGCGCCGTGCCGGTGCTGGTCGACGGCGGAATCCGGCGAGGCACTGACGTGTTCAAGGCCCTGGCGCTCGGCGCACGGGCGGTCATGGTTGGGAGGGCCGGTGTTCTTCGGGCTGGCGGCGAGGGGGGAGGCAGGCGCGAGGCACGTGATCGAGATGCTCAACGGCGAGCTGGAGGTGGCCATGGCGCTCTGCGGCTGCCGGAGCGTCGGCGAGATCACCCGCAGCCATGTCATGACCGAGGGTGACAGGATCAGGTCCCTGCTCTGATGAATCATTTCTCATCTGGCCAATGCAGCTTCAGGTCTAAAAATACAAGTGGGCTATGGGCCAACCCGTAAACCGATTTATAGGTAAATTATCTCAGAATACGGATCTCAGCCTCCCGTCAGGAATCGTGTAGCGTGTTTGGCAAGAATACAGTGAAAAGAGCATAGCATTGATCTGACAGTGAACAATAAGGAACTCGAGGAGAAAACCCCATCAATTTGTTGTGCAAACACATACACTTTGTTTCGCA]

[+] EMBL BE040927             [GCCGGCGCCGTGCCGGTGCTGGTCGACGGCGGAATCCGGCGAGGCACTGACGTGTTCAAGGCCCTGGCGCTCGGCGCACGGGCGGTCATGGTTGGGAGGGCCGGTGTTCTTCGGGCTGGCGGCGAGGGGGGAGGCAGGCGCGAGGCACGTGATCGAGATGCTCAACGGCGAGCTGGAGGTGGCCATGGCGCTCTGCGGCTGCCGGAGCGTCGGCGAGATCACCCGCAGCCATGTCATGACCGAGGGTGACAGGATCAGGTCCCTGCTCTGATGAATCATTTCTCATCTGGCCAATGCAGCTTCAGGTCTAAAAATACAAGTGGGCTATGGGCCAACCCGTAAACCGATTTATAGGTAAATTATCTCAGAATACGGATCTCAGCCTCCCGTCAGGAATCGTGTAGCGTGTTTGGCAAGAATACAGTGAAAAGAGCATAGCATTGATCTGACAGTGAACAATAAGGAACTCGAGGAGAAAACCCCATCAATTTGTTGTGCAAACACATACACTTTGTTTCGCA]




>consensus_13184#3
GCCGGCGCCGTGCCGGTGCTGGTCGACGGCGGAATCCGGCGAGGCACTGACGTGTTCAAG
GCCCTGGCGCTCGGCGCACGGGCGGTCATGGTTGGGAGGGCCGGTGTTCTTCGGGCTGGC
GGCGAGGGGGGAGGCAGGCGCGAGGCACGTGATCGAGATGCTCAACGGCGAGCTGGAGGT
GGCCATGGCGCTCTGCGGCTGCCGGAGCGTCGGCGAGATCACCCGCAGCCATGTCATGAC
CGAGGGTGACAGGATCAGGTCCCTGCTCTGATGAATCATTTCTCATCTGGCCAATGCAGC
TTCAGGTCTAAAAATACAAGTGGGCTATGGGCCAACCCGTAAACCGATTTATAGGTAAAT
TATCTCAGAATACGGATCTCAGCCTCCCGTCAGGAATCGTGTAGCGTGTTTGGCAAGAAT
ACAGTGAAAAGAGCATAGCATTGATCTGACAGTGAACAATAAGGAACTCGAGGAGAAAAC
CCCATCAATTTGTTGTGCAAACACATACACTTTGTTTCGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13184#0      ACCTAAATGTTGTTAGGAAGTGAGGACTGAGCTTTCCTCTCCTTCACTCGTACTGTTTCT 60
consensus_13184#1      ----------------------------------------------CTCGTACTGTTTCT 14
consensus_13184#3      ------------------------------------------------------------
consensus_13184#2      ------------------------------------------------------------
                                                                                   

consensus_13184#0      GATATCATTGATTGCTATCCTCCTCCTCCTCCTTCCTCCCCTAAATCTCTAGAGAAATGG 120
consensus_13184#1      GCTATCATTGATTGCTATCCTCCTCCTCCT---TCCTCCCCTAAATCTCTAGAGAAATGG 71
consensus_13184#3      ----------GCCGGCGCCGTGCCGGTGCTGG-TCGACGGCGGAATCCGGCGAGGCACTG 49
consensus_13184#2      --------------------------TGCT---CTGTCGCTTGAACAAATATCCGAACAA 31
                                                 * **       *     **           *   

consensus_13184#0      AGGACAATCTACCAGTCAATGTCCGGGAGTATCAAGAACTCGCCAAAAAAGCGTTGCCAA 180
consensus_13184#1      AGGACAATCTACCAGTCAATGTCCGGGAGTATCAAGAACTCGCCAAAAAAGCGTTGCCAA 131
consensus_13184#3      ACG-TGTTCAAGGCCCTGGCGCTCGGCG----CACGGGCG-GTCATGGTTGGGAGGGCCG 103
consensus_13184#2      ATG--GTTTTCCCCACCGGAGT--GGTAATCTCTAAGTTTAATCACACATAGATGACCCA 87
                       * *    *            *   **      *          **            *  

consensus_13184#0      AGATGGCTTATGATTACA-TCAATGGGGGAGCAGAGGATGAGCACACACTGAGGGAGAAT 239
consensus_13184#1      AGATGGCTTATGATTACA-TCAATGGGGGAGCAGAGGATGAGCACACACTGAGGGAGAAT 190
consensus_13184#3      GTGTTCTTCGGGCTGGCG-GCGAGGGGGGAGGCAGGCGCGAG-GCACG-TGATCGAGATG 160
consensus_13184#2      TGATACCACAAAACGGTTCTCAGCTCGAACGATTCGCACGAGCGACCTGGATCCATCATT 147
                          *                *     *   *    *   ***    *          *  

consensus_13184#0      ATCG-CAGCATACACAAGAATTATATTACGACCTCGCGTTCTTGTGGATGTGAGCAAGAT 298
consensus_13184#1      ATCG-CAGCATACACAAGAATTATATTACGACCTCGCGTTCTTGTGGATGTGAGCAAGAT 249
consensus_13184#3      CTCAACGGCGAGCTGGAGGTGGCCATGGCG-CTCTGCGGCTGCCGGAGCGTCGGCGAGAT 219
consensus_13184#2      ATCATGGAAGGATATAGAGTGGCTCAAGTCCATAACCAGCATGCCGATCTTTCTCCAAGG 207
                        **                                 *        *    *   * *   

consensus_13184#0      -------AGACATGTCAACAACTTTATTAGGATACACCATGCGTTCACCC--ATAATTGT 349
consensus_13184#1      -------AGACATGTCAACAACTTTATTAGGATACACCATGCGTTCACCC--ATAATTGT 300
consensus_13184#3      CACCCGCAGCCATGTCA-TGACCGAGGGTGACAGGATCAGGTCCCTGCTCTGATGAATCA 278
consensus_13184#2      --------GCATCGTCA-CCGCTGAGGACGGTAATTACTCCAGTTCATCC--ATCATCTT 256
                               *    ****    *       *       *           *  ** *    

consensus_13184#0      GGCTCCAACTGGGGGGCACAAATTAGCACATCCAGAAGGG-GAGAAGGCTACAGCAAGAG 408
consensus_13184#1      GGCTCCAACTGGGGGGCACAAATTAGCACATCCAGAAGGG-GAGAAGGCTACAGCAAGAG 359
consensus_13184#3      TTTCTCATCTGGCCAATGCAGCTT--CAGGTCTAAAAATACAAGTGGGCTATGGGCCAAC 336
consensus_13184#2      GGTC---ACTGAATAATTCACTGTCATGCATGTT-AAATATATGTGATCCGAATTTTGGG 312
                               ***       **   *      *    **      *    *           

consensus_13184#0      CTGCAGCATCATGTAACGCCATAATGGTTCTTTCCTTTTCTTCCAGTTGCAAGATTGAGG 468
consensus_13184#1      CTGCAGCATCATGTAACGCCATAATG--------------------TTGCAAGATTGAGG 399
consensus_13184#3      CCGTAAACCGATTTATAGGTAAATTA---------------------TCTCAGAATACGG 375
consensus_13184#2      CTCATAGTATATTCGTATTAGTTATGTAATAGA--------------CTCTACTTTATAG 358
                       *         **            *                          *   *   *

consensus_13184#0      ATGTT-GCCTCCAGAT-GCAATGCCATT-CGCTTTTATCAGCTATATGTGTATAAGA--A 523
consensus_13184#1      ATGTC-GCCTCCAGTT-GCAATGCCATT-CGCTTTTATCAGCTATATGTGTATAAGA--A 454
consensus_13184#3      ATCTCAGCCTCCCGTCAGGAATCGTGTAGCGTGTTTGGCAAGAATACAGTGAAAAGAGCA 435
consensus_13184#2      GATTA-GTTTCCTATTAGGACTCCTAGATTTCTCCTATATATATCCCTTATAAGCCGCAC 417
                          *  *  ***     * * *             *               *        

consensus_13184#0      TAGGAATGTTTCAGCAACATTA-TTACGGCGGGCCGAGAGTTGTGGATTCAAGGCACTTC 582
consensus_13184#1      TAGGAATGTTTCAGCAACATTA-GTACGGCGGGCCGAGAGTTGTGGATTCAAGGCACTTC 513
consensus_13184#3      TAGCATTGATCTGACAG--TGA-ACAATAAGGAACTCGAGGAGAAAACCCCATCAATTTG 492
consensus_13184#2      CAGGGAGGGTGCGATAGCCCAATGTATTCCCTGCGTTTGTATCCAACTCTTCTATAGTGA 477
                        **    * *     *     *   *                             * *  

consensus_13184#0      TT-TTGACAGTTGACACTCCTATGCTCGGTCGGCGTGAAGCAGATATCCGAAACAAAATG 641
consensus_13184#1      TT-TTGACAGTTGACACTTCTATGCTCGGTCGGCGTGAAGCAGATATCCGAAACAAAATG 572
consensus_13184#3      TT-GTGCAAACACATACACTT-TGTTTCGCA----------------------------- 521
consensus_13184#2      TCATTGCCGGTCGGCGCCCGTGGTTTTCTCCCGCCAAGGGTTTTCCAC------------ 525
                       *   **          *   *    *                                  

consensus_13184#0      GTTTTCCCACGGAGTGGTAATCTCGAAGGTTTAATGACAACAGATGACCATGATACCACA 701
consensus_13184#1      GNTTTCCCACGGAGTGGTAATCTCGAANGGTTAAT------------------------- 607
consensus_13184#3      ------------------------------------------------------------
consensus_13184#2      ------------------------------------------------------------
                                                                                   

consensus_13184#0      AACGGTTCTCAGCTCGAACGATTCGCACGAGCGACGCTGGATCCATCATTATCATGGAAG 761
consensus_13184#1      ------------------------------------------------------------
consensus_13184#3      ------------------------------------------------------------
consensus_13184#2      ------------------------------------------------------------
                                                                                   

consensus_13184#0      GATATAGAGTGGCTCAAGTCCATAACCAGCATGCCGATCTTTCTCAAGGGCATCGTCACC 821
consensus_13184#1      ------------------------------------------------------------
consensus_13184#3      ------------------------------------------------------------
consensus_13184#2      ------------------------------------------------------------
                                                                                   

consensus_13184#0      GCTGAGGACGCGAGGAGAGCAGTGGAGGCCGGGGTGGCCGGCGTGATCGTCTCCAACCAC 881
consensus_13184#1      ------------------------------------------------------------
consensus_13184#3      ------------------------------------------------------------
consensus_13184#2      ------------------------------------------------------------
                                                                                   

consensus_13184#0      GGCGCGCGGCAGCTGGACTACGCGCCGGCGACCATCGCCGCCCTGGAAGAGGTGGTCAGG 941
consensus_13184#1      ------------------------------------------------------------
consensus_13184#3      ------------------------------------------------------------
consensus_13184#2      ------------------------------------------------------------
                                                                                   

consensus_13184#0      GCGGTGGCCGGCGCCGTGCCGGTGCTGGTCGACGGCGGAATCCGGCGAGGCACTGACGTG 1001
consensus_13184#1      ------------------------------------------------------------
consensus_13184#3      ------------------------------------------------------------
consensus_13184#2      ------------------------------------------------------------
                                                                                   

consensus_13184#0      TTCAAGGCCCTGGCGCTCGGCGCACGGGCGGTCATGGTTGGGAGGCCGGTGTTCTTCGGG 1061
consensus_13184#1      ------------------------------------------------------------
consensus_13184#3      ------------------------------------------------------------
consensus_13184#2      ------------------------------------------------------------
                                                                                   

consensus_13184#0      CTGGCGGCGAGGGGGGAGGCAGGCGCGAGGCACGTGATCGAGATGCTCAACGGCGAGCTG 1121
consensus_13184#1      ------------------------------------------------------------
consensus_13184#3      ------------------------------------------------------------
consensus_13184#2      ------------------------------------------------------------
                                                                                   

consensus_13184#0      GAGGTGGCCATGGCGCTCTGCGGCTGCCGGAGCGTCGGCGAGATCACCCGCAGCCATGTC 1181
consensus_13184#1      ------------------------------------------------------------
consensus_13184#3      ------------------------------------------------------------
consensus_13184#2      ------------------------------------------------------------
                                                                                   

consensus_13184#0      ATGACCGAGGGTGACAGGATCAGGTCCCTGCTCTGATGAATCATTTCTCATCTGGCCAAT 1241
consensus_13184#1      ------------------------------------------------------------
consensus_13184#3      ------------------------------------------------------------
consensus_13184#2      ------------------------------------------------------------
                                                                                   

consensus_13184#0      GCAGCTTCAGGTCTAAAAATACAAGTGGGCTATGGGCCAACCCGTAAACCGATTTATAGG 1301
consensus_13184#1      ------------------------------------------------------------
consensus_13184#3      ------------------------------------------------------------
consensus_13184#2      ------------------------------------------------------------
                                                                                   

consensus_13184#0      TAATAAAATTTGACCGACCCGTGAATCTATTTATATGTAAAATTAGTGGGTAATCCAAAG 1361
consensus_13184#1      ------------------------------------------------------------
consensus_13184#3      ------------------------------------------------------------
consensus_13184#2      ------------------------------------------------------------
                                                                                   

consensus_13184#0      TCTACTTATTTGGTCTATAACTATAAGTGGCTTCGCGGATCAGTCCAGTTACATCATATT 1421
consensus_13184#1      ------------------------------------------------------------
consensus_13184#3      ------------------------------------------------------------
consensus_13184#2      ------------------------------------------------------------
                                                                                   

consensus_13184#0      CAGGTCTCAATGTGAGAGACTTTAGTATATGCAGTATATTGCAATTGGATTTATGGATAA 1481
consensus_13184#1      ------------------------------------------------------------
consensus_13184#3      ------------------------------------------------------------
consensus_13184#2      ------------------------------------------------------------
                                                                                   

consensus_13184#0      CGGGTAGTAACATGGTTGATGAAATGGTGAATAATTGAGCTGGAAGGTTAGCAGATTACC 1541
consensus_13184#1      ------------------------------------------------------------
consensus_13184#3      ------------------------------------------------------------
consensus_13184#2      ------------------------------------------------------------
                                                                                   

consensus_13184#0      ATATGCTACAGAAAAAGTAAAGGA 1565
consensus_13184#1      ------------------------
consensus_13184#3      ------------------------
consensus_13184#2      ------------------------