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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13186#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1097 fasta sequence
[CACATAAAACTATATCATCATCTTCCATAGCTGTACACATCCTATATTTTCATTCATGGCGATGACACCGCAGCTAGCATTTTCTCGCATGCCTCCAGGGTTTCGGTTCCAGCCGACGGACGAGCAGCTTGTCGTCGACTACTTGCAGAGGCGTACCGCTGCG-CAGCCATGCGTTACTCCCGACATCACCGATATCGACGTTTACAACGTCGACCCGTGGCAGCTTCCAGCCATGGCGATGTATGGATCGGATCATGACCGGTACTTCTTCACGATGGCGGCCCGAGAGGCGCAGGCCAGACGAACGACACCGTCGGGTTTCTGGAAGCCCACCGGCACAAAGAAGACGATCTTCGTCGTCGCCGGTGGGCATGAGGTGCCCACCGCCGTCAAGAGGAGGTTCGTCTTCTACCTCGGCCACCACCAACCATCGGGCAGCAACA-ACAACAACAAAACATCATGGATCATGCATGAGTACCGTCTCATGAACTCTCCAAGAGCGGCAGTGCCGTCGTCTTCTTCGGTGAATCGTCTTCCCA-CTGATGATCTCACGGAAGAGATGGTGCTGTGTAGGATCT-CCAACAAGGACCTGC-C-TAAACCA-CCCTT-CATCCACAAC-GGCTTGTTGCAGTTCTC-TTCAGTGGGGTTGAAT-GGTGATGGGTATAATTACTTGATCCTTGATC-ACCTTGAGCCTCCAGC-AATGGAGTATCCTAATGTTGACATTGGTAAT-GTTGATGATGCTGCTGCTGCTGATGATGAT-CCGGGTGACCTTGATGAGGAGA-TTGATGATAGCATGC-AAAGAAACCATGG-TGGCTAGAATTAACCAGTAGCATCATGAGTGAAT-GGTTTAATTTGCTGGAG-ATTTGAGTTAAATATCAGATAATAAAATAATAATACAAAGAATAAAAAG-AAAACAAACCTGTATAGTTAGCAGGTT-TTGATTCCTTTCG-TTGAACTTTGTGTGCTTGTTAGCTAGCCTATATACCAAACATG-CCTTGGCGAGGCTTTCTATTTGTATATAG-CTTTTTTTCTTTTTTCTATTGTAAGGTTCGAACTCTATTGAGTTGATTGAATAAACATTATG-CAATTT-ATGTAAAAAA]
[+] EMBL AK107283 [CACATAAAACTATATCATCATCTTCCATAGCTGTACACATCCTATATTTTCATTCATGGCGATGACACCGCAGCTAGCATTTTCTCGCATGCCTCCAGGGTTTCGGTTCCAGCCGACGGACGAGCAGCTTGTCGTCGACTACTTGCAGAGGCGTACCGCTGCG CAGCCATGCGTTACTCCCGACATCACCGATATCGACGTTTACAACGTCGACCCGTGGCAGCTTCCAGCCATGGCGATGTATGGATCGGATCATGACCGGTACTTCTTCACGATGGCGGCCCGAGAGGCGCAGGCCAGACGAACGACACCGTCGGGTTTCTGGAAGCCCACCGGCACAAAGAAGACGATCTTCGTCGTCGCCGGTGGGCATGAGGTGCCCACCGCCGTCAAGAGGAGGTTCGTCTTCTACCTCGGCCACCACCAACCATCGGGCAGCAACA ACAACAACAAAACATCATGGATCATGCATGAGTACCGTCTCATGAACTCTCCAAGAGCGGCAGTGCCGTCGTCTTCTTCGGTGAATCGTCTTCCCA CTGATGATCTCACGGAAGAGATGGTGCTGTGTAGGATCT CCAACAAGGACCTGC C TAAACCA CCCTT CATCCACAAC AGCTTGTTGCAGTTCTC TTCAGTGGGGTTGAAT GGTGATGGGTATAATTACTTGATCCTTGATC ACCTTGAGCCTCCAGC AATGGAGTATCCTAATGTTGGCATTGGTAAT GTTGATGATGCTGCTGCTGGTACTGATGAT CCGGGTGACCTTGATGAGGAGA TTGATGATAGCATGC AAAGAAACCATGG TGGCTAGAATTAACCAGTAGCATCATGAGTGAAT GGT TTTGCGGGAG ATTTGAGTTAAATATCAGATAATAAAATAATAATACAAAGAATAAAAAGAAAAACAAACCTGTATAGTTAGCAGGTT TTGATTCATTTCG TTGAACTTTGTGTGCTTGTTAGCTAGCCTATATACCAAACATG CCTTGGCGAGGCTTTCTATTTGTATATAG CTTTTTTTCTTTTTTCTATTGTAAGGTTCGAACTCTATTGAGTTGATTGAATAAACATTATG CAATTT ATGTAAca ]
[+] EMBL AU174431 [ ATATCATCATCTTCCATAGCTGTACACATCCTATATTTTCATTCATGGCGATGACACCGCAGCTAGCATTTTCTCGCATGCCTCCAGGGTTTCGGTTCCAGCCGACGGACGAGCAGCTTGTCGTCGACTACTTGCAGAGGCGTACCGCTGCG CAGCCATGCGTTACTCCCGACATCACCGATATCGACGTTTACAACGTCGACCCGTGGCAGCTTCCAGCCATGGCGATGTATGGATCGGATCATGACCGGTACTTCTTCACGATGGCGGCCCGAGAGGCGCAGGCCAGACGAACGACACCGTCGGGTTTCTGGAAGCCCACCGGCACAAAGAAGACGATCTTCGTCGTCGCCGGTGGGCATGAGGTGCCCACCGCCGTCAAGAGGAGGTTCGTCTTCTACCTCGGCCACCACCAACCATCGGGCA ]
[+] EMBL CB096250 [ acTAT ATCATCTTCCATAGCTGTACACATCCTATATTTTCATTCATGGCAATGACACCGCAGCTAGCATTTTCTCGCATGCCTCCAGGGTTTCGGTTCCAGCCGACGGACGAGCAGCTTGTCGTCGACTACTTGCAGAGGCGTACCGCTGCG CAGCCATGCGTTACTCCCGACATCACCGATATCGACGTTTACAACGTCGACCCGTGGCAGCTTCCAGCCATGGCGATGTATGGATCGGATCATGACCGGTACTTCTTCACGATGGCGGCCCGAGAGGCGCAGGCCAGACGAACGACACCGTCGGGTTTCTGGAAGCCCACCGGCACAAAGAAGACGATCTTCGTCGTCGCCGGTGGGCATGAGGTGCCCACCGCCGTCAAGAGGAGGTTCGTCTTCTACCTCGGCCACCACCAACCATCGGGCAGCAACA ACAACAACAAAACATCATGGATCATGCATGAGTACCGTCTCATGAACTCTCCAAGAGCGGCAGTGCCGTCGTCTTCTTCGGTGAATCGTCTTCCCA CTGATGATCTCACGGAAGAGATGGTGCTGTGTAGGATCT CCAACAAGGACCTGC C TAAACCA CCCTT CATCCACAAC GGCTTGTTGCAGTTCTC TTCAGTGGGGTTGAATGGGTGATGGGTATAATTACTTGATCCTTGATC ACCTTGAGCCTNCAGC TATGGAGTATCCTAATGGTGACATTGGTAATGGTTGATGATGCTGCTGCTGCTGATGATGATNCCGGGTGACCNTGATGAGGAGA TTGATGATAGCATGC AAAGAAANCATGG TGGCTAGAATTAACCAGTAGCATCATGAGNGGATGGGTTTAANTTGCTGGGGNATTTGAGNTNAAAATCAG ]
[+] EMBL AA751268 [ CATCTTCCATAGCTGTACACATCCTATATTTTCATTCATGGCAATGACACCGCAGCTAGCATTTTCTCGCATGCCTCCAGGGTTTCGGTTCCAGCCGACGGACGAGCAGCTTGTCGTCGACTACTTGCAGAGGCGTACCGCTGCGTCAGCCATGGCTTACTCCCGACATCACCGATATCGAC ]
[+] EMBL BI801387 [ GAGGTTCTTCTTCTACCTC GCCACCACCAACCATCGGGCAGCAACATACAACGAC AAACATCATGGATCATGCATGAGTACCGTCTCATGAACTCTCCAAGAGC GCAGT CCGTCGTCTTCTTCGGTGAATCGTCTTCCCA CTGATGATCTCACGGAAGAGATGGTTCTGTGTAGGATCT CC ACAAGGACCTGC C TAAACCA CCCTT CATCCACAAC GGCTTGTT CAGTTCTC TTCAGTGGGGTTGAAT GGTGATGGGTATAATTACTTGATCCTTGATC ACCTTGAGCCTCCAGC AATGGAGTATCCTAATGTTGACATTGGTAAT GTTGATGATGCTGCTGCTGCTGATGATGAT CCGGGTGACCTTGATGAGGAGA TTGATGATAGCATGC AAGAAACCATGG TGGCTAGAATTAACCAGTAGCATCATGAGTGAAT GGTTTAATTTGCTGGAG ATTTGAGTTAAATATCAGATAATAAAATAATAATAC AAGAAAAAAAAa ]
[+] EMBL BI804344 [ GTCTTCCCAGCTGATGATCTCACGGAAGAGATGGT CTGTGTAGGATCTCCCATCAAGGACCTGCAC TAAACCA CCCTT CATCCACAAC GGCTTGTTGCAGTTCTC TTCAGTGGGGTTGAAT GGTGATGGGTATAATTACTTGATCCTTGATCAACCTTGAGCCTCCAGC CATGGAGTATCCTAATGTTGACCTTGGTAAT GTTGATGATGCTGCTGCTGCTGATGATGAT CCGGGTGACCTTGATGAGGAGACTTGATGATAGCATGC CAAGAAACCCTGGCTGGCTAGAATTAACCCGTAGCATCATGAGTGAAT GGTTTAATTTGCTGGAG ATTTGAGTTAAATATCAGATAAT AAATAATAATACCAAGAAT AAAAG AAAACCAACCTGTATAGTTACCCGGTTCTTGATTCCTTTCGCTTGAAaaaaaaaa ]
[+] EMBL AA752403 [ cgagAGGATCT CCAACAAGGACCTGC C TAAACCA CCCTT CATCCACAAC GGCTTGTTGCAGTTCTC TTCAGTGGGGTTGAAT GGTGATGGGTATAATTACTTGATCCTTGATC ACCTTGAGCCTCCAGC AATGGAGTATCCTAATGTTGACATTGGTAAT GTTGATGATGCTGCTGCTGCTGATGATGAT CCGGGTGACCTTGATGAGGAGA TTGATGATAGCATGC AAAGAAACCATGG TGGCTAGAATTAACCAGTAGCATCATGAGTGAAT G ]
[+] EMBL BI802185 [ ACCTGC CTTAACCCACCCCTTGCAGCCACAACAGGCTT TT CAATTCTCTTTCAGT GGGTTGAAT GTGATGGGTATAATTACTTGATCCTTGATC ACCTTGAGCCTCCAGCAAATGGAGTATCCTAATGTTGACATTGGTAAT GTTGATGATGCTGCTGCTGCTGATGATGAT CCGGGTGACCTTGATGAGGAGA TTGATGATAGCATGCAAAAGAAACCATGG TGGCTAGAATTAACCAGTAGCATCATGAGTGAAT GGTTTAATTTGCTGGAG ATTTGAGTTAAATATCAGATAATAAAATAATAATACAAAGAATAAAAAG AAAAC AACCTGTATAGTTA CAGGTT TTGATTCCTTTCG TTGAACTTTGTGTGCTTGTTAGCTAGCCTATATACCAAACATGCCCTTGGCGAGGCTTTCTATTTGTATATA TTTTTT TTCTTCCTA TGTAAGGTTCGAACTCTATTGAGTTGATTGAATAAACATTATGCCAATTTAATGTAAAAAA]
[+] EMBL BI804022 [ GCTT TTCCAGTTCTC TTCAGT GGGTTGAAT GGTGATGGGTATAATTACTTGATCCTTGATC ACCTTGAGCCTCCA C AATGGAGTATCCTAATGTTGACATTGGTAAT GTTGATGATGCTGCTGCTGCTGATGATGAT CCGGGTGACCTTGATGAGGAGA TTGATGATAGCATGC AAGAAACCATGG TGGCTAGAATTAACCAGTAGCATCATGAGTGAAT GGTTTAATTTGCTGGAG ATTTGAGTTAAATATCAGATAATAAAATAATAATACCAAGAATAAAAAG AAAAC AACCTGTATAGTTAGCAGGTT TTGATTCCTTTCG TTGAACTTTGTGTGCTTGTTAGCTAGCCTATATACC AACATG CCTTGGCGAGGCTTTCTATTTGTATATAGTTTTTTTTTCTTTTTCCTATTGTAAGGTTCGAACTCTATTGAGTTGATTGAATAAACATTAT C ATTT ATGTAAAAAA]
[+] EMBL AU174432 [ ATGGGTATAATTACTTGATCCTTGATC ACCTTGAGCCTCCAGC AATGGAGTATCCTAATGTTGGCATTGGTAAT GTTGATGATGCTGCTGCTGGTACTGATGAT CCGGGTGACCTTGATGAGGAGA TTGATGATAGCATGC AAAGAAACCATGG TGGCTAGAATTAACCAGTAGCATCATGAGTGAAT GGT TTTGCGGGAG ATTTGAGTTAAATATCAGATAATAAAATAATAATACAAAGAATAAAAAGAAAAACAAACCTGTATAGTTAGCAGGTT TTGATTCATTTCG TTGAACTTTGTGTGCTTGTTAGCTAGCCTATATACCAAACATG CCTTGGCGAGGCTTTCTATTTGTATATAG CTTTTTTTCTTTTTTCTATTGTAAGGTTCGAACTCTATTGAGTTGATTGAATAAACATTATG CAATTT ATGTAAAAAA]
consensusID : consensus_13186#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 580 fasta sequence
[CGTGGGATGGTATTCTTCCCGGAATAGAGATTGGGCTCCCTGTGTAGGTATCCTCCACACCAGAGGACCTGCCTATAGCCCCACCCTTCATCCACAAACGGCTTGTGCGCACAGTTCTCTTCAGTGGGGTTGAATGGTGATGGGTATAATTACTTGATCCTTGATCACCTTGAGCCTCCAGCAATGGAGTATCCTAATGTTGACATTGGTAATGTTGATGATGCTGCTGCTGCTGATGATGATCCGGGTGACCTTGATGAGGAGATTGATGATAGCATCAAGAAACCATGGTGGCTAGAATTAACCAGTAGCATCATGAGTGAATGGTTTAATTTGCTGGAGATTTGAGTTAAATATCAGATAATAAAATAATAATACCAAGAATAAAAAGAAAACCAACCTGTATAGTTACAGGTTTTGATTCCTTTCGTTGAACTTTGTGTGCTTGTTAGCTACCCTATATACCCAACATCCCTTGGCGAGCCTTTCTATTTGTATATAGTTTTTTTTTCTTTTTCCTATTGTAAGGTTCGAACTCTATTGAGTTGATTGAATAAACATTATCCATTTATGTAAAAAA]
[+] EMBL BI804043 [CGTGGGATGGTATTCTTCCCGGAATAGAGATTGGGCTCCCTGTGTAGGTATCCTCCACACCAGAGGACCTGCCTATAGCCCCACCCTTCATCCACAAACGGCTTGTGCGCACAGTTCTCTTCAGTGGGGTTGAATGGTGATGGGTATAATTACTTGATCCTTGATCACCTTGAGCCTCCAGCAATGGAGTATCCTAATGTTGACATTGGTAATGTTGATGATGCTGCTGCTGCTGATGATGATCCGGGTGACCTTGATGAGGAGATTGATGATAGCATCAAGAAACCATGGTGGCTAGAATTAACCAGTAGCATCATGAGTGAATGGTTTAATTTGCTGGAGATTTGAGTTAAATATCAGATAATAAAATAATAATACCAAGAATAAAAAGAAAACCAACCTGTATAGTTACAGGTTTTGATTCCTTTCGTTGAACTTTGTGTGCTTGTTAGCTACCCTATATACCCAACATCCCTTGGCGAGCCTTTCTATTTGTATATAGTTTTTTTTTCTTTTTCCTATTGTAAGGTTCGAACTCTATTGAGTTGATTGAATAAACATTATCCATTTATGTAAAAAA]
consensusID : consensus_13186#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 205 fasta sequence
[GGCAATGACACCGCAGCGAGCTAGCATTTTCTCGCATGCCTCCAGGGTTTCGGTTCCAGCCGACGGACGAGCAGCTTGTCGTCGACTACTTGCAGAGGCGTACCGCTGCGCACCGATCGGTTACTCCCGACATCACCGATATCGTCGTTTACAACGGACCCGTGGCACGTTCAGCATGGCATGTATGGATCGATCCTGTCCGGTA]
[+] EMBL AA749963 [GGCAATGACACCGCAGCGAGCTAGCATTTTCTCGCATGCCTCCAGGGTTTCGGTTCCAGCCGACGGACGAGCAGCTTGTCGTCGACTACTTGCAGAGGCGTACCGCTGCGCACCGATCGGTTACTCCCGACATCACCGATATCGTCGTTTACAACGGACCCGTGGCACGTTCAGCATGGCATGTATGGATCGATCCTGTCCGGTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13186#0 ------------------------------------------------------------
consensus_13186#2 ------------------------------------------------------------
consensus_13186#1 CGTGGGATGGTATTCTTCCCGGAATAGAGATTGGGCTCCCTGTGTAGGTATCCTCCACAC 60
consensus_13186#0 --CACATAAAACTATATCATCATCTTCCATAGCTGTACACATCCTATATTTTCATTCATG 58
consensus_13186#2 -----------------------------------------------------------G 1
consensus_13186#1 CAGAGGACCTGCCTATAGCCCCACCCTTCATCCACAAACGGCTTGTGCGCACAGTTCTCT 120
consensus_13186#0 GCGATGACACCGCAGC----TAG-CATTTTCTCGCATGCCTCCAGGGTTTCGGTTCCAGC 113
consensus_13186#2 GCAATGACACCGCAGCGAGCTAG-CATTTTCTCGCATGCCTCCAGGGTTTCGGTTCCAGC 60
consensus_13186#1 TCAGTGGGGTTGAATGGTGATGGGTATAATTACTTGATCCTTGATCACCTTGAGCCT--C 178
* ** * * * * ** * * *** * * * * *
consensus_13186#0 CGACGGACGAGCAGCTTGTCGTCGACTACTTGCAGAGGCG-TACCGCTGC-GCAGCCATG 171
consensus_13186#2 CGACGGACGAGCAGCTTGTCGTCGACTACTTGCAGAGGCG-TACCGCTGC-GCACCGATC 118
consensus_13186#1 CAGCAATGGAGTATCCTAATGTTGAC-ATTGGTAATGTTGATGATGCTGCTGCTGCTGAT 237
* * *** * * * ** *** * * * * * * * ***** ** *
consensus_13186#0 CGTTACTCC--CGACATCACCGAT---ATCGACGTTTACAACGTCGACCCGTGGCAGC-- 224
consensus_13186#2 GGTTACTCC--CGACATCACCGAT---ATCGTCGTTTACAACG--GACCCGTGGCA-C-- 168
consensus_13186#1 GATGATCCGGGTGACCTTGATGAGGAGATTGATGATAGCATCAAGAAACCATGGTGGCTA 297
* * * *** * ** ** * * * ** * * ** *** *
consensus_13186#0 --TTCCAGCCATGGCG--ATGTATGGATCGGATCATGACCGGTACTTCTTCACGATGGCG 280
consensus_13186#2 --GTTCAGC-ATGGC---ATGTATGGATCG-ATCCTGTCCGGTA---------------- 205
consensus_13186#1 GAATTAACCAGTAGCATCATGAGTGAATGGTTTAATTTGCTGGAGATTTGAGTTAAATAT 357
* * * * ** *** ** ** * * * * * *
consensus_13186#0 GCCCGAGAGGCGCAGGCCAGACGAACGACACCGTCGGGTTTCTGGAAGCCCACCGGCACA 340
consensus_13186#2 ------------------------------------------------------------
consensus_13186#1 CAGATAATAAAATAATAATACCAAGAATAAAAAGAAAACCAACCTGTATAGTTACAGGTT 417
consensus_13186#0 AAGAAGACGATCTTCGTCGTCGCCGGTGGGCATGAGGTGCCCACCGCCGTCAAGAGGAGG 400
consensus_13186#2 ------------------------------------------------------------
consensus_13186#1 TTGATTCCTTTCGTTGAACTTTGTGTGCTTGTTAGCTACCCTATATACCCAACATCCCTT 477
consensus_13186#0 TTCGTCTTCTACCTCGGCCACCACCAACCATCGGGCAGCAACAACAACAACAAAACATCA 460
consensus_13186#2 ------------------------------------------------------------
consensus_13186#1 GGCGAGCCTTTCTATTTGTATATAGTTTTTTTTTCTTTTTCCTATTGTAAGGTTCGAACT 537
consensus_13186#0 TGGATCATGCATGAGTACCGTCTCATGAACTCTCCAAGAGCGGCAGTGCCGTCGTCTTCT 520
consensus_13186#2 ------------------------------------------------------------
consensus_13186#1 CTATTGAGTTGATTGAATAAACATTATCCATTTATGTAAAAAA----------------- 580
consensus_13186#0 TCGGTGAATCGTCTTCCCACTGATGATCTCACGGAAGAGATGGTGCTGTGTAGGATCTCC 580
consensus_13186#2 ------------------------------------------------------------
consensus_13186#1 ------------------------------------------------------------
consensus_13186#0 AACAAGGACCTGCCTAAACCACCCTTCATCCACAACGGCTTGTTGCAGTTCTCTTCAGTG 640
consensus_13186#2 ------------------------------------------------------------
consensus_13186#1 ------------------------------------------------------------
consensus_13186#0 GGGTTGAATGGTGATGGGTATAATTACTTGATCCTTGATCACCTTGAGCCTCCAGCAATG 700
consensus_13186#2 ------------------------------------------------------------
consensus_13186#1 ------------------------------------------------------------
consensus_13186#0 GAGTATCCTAATGTTGACATTGGTAATGTTGATGATGCTGCTGCTGCTGATGATGATCCG 760
consensus_13186#2 ------------------------------------------------------------
consensus_13186#1 ------------------------------------------------------------
consensus_13186#0 GGTGACCTTGATGAGGAGATTGATGATAGCATGCAAAGAAACCATGGTGGCTAGAATTAA 820
consensus_13186#2 ------------------------------------------------------------
consensus_13186#1 ------------------------------------------------------------
consensus_13186#0 CCAGTAGCATCATGAGTGAATGGTTTAATTTGCTGGAGATTTGAGTTAAATATCAGATAA 880
consensus_13186#2 ------------------------------------------------------------
consensus_13186#1 ------------------------------------------------------------
consensus_13186#0 TAAAATAATAATACAAAGAATAAAAAGAAAACAAACCTGTATAGTTAGCAGGTTTTGATT 940
consensus_13186#2 ------------------------------------------------------------
consensus_13186#1 ------------------------------------------------------------
consensus_13186#0 CCTTTCGTTGAACTTTGTGTGCTTGTTAGCTAGCCTATATACCAAACATGCCTTGGCGAG 1000
consensus_13186#2 ------------------------------------------------------------
consensus_13186#1 ------------------------------------------------------------
consensus_13186#0 GCTTTCTATTTGTATATAGCTTTTTTTCTTTTTTCTATTGTAAGGTTCGAACTCTATTGA 1060
consensus_13186#2 ------------------------------------------------------------
consensus_13186#1 ------------------------------------------------------------
consensus_13186#0 GTTGATTGAATAAACATTATGCAATTTATGTAAAAAA 1097
consensus_13186#2 -------------------------------------
consensus_13186#1 -------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||