cluster # 13236

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Oryza sativa
cluster # 13236 cluster # 13236 Sequences # 12 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13236#0 length = 1754 sequences # 9
consensus_13236#1 length = 659 sequences # 1

consensus_13236#2 length = 568 sequences # 1
consensus_13236#3 length = 170 sequences # 1

consensusID : consensus_13236#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 1754
fasta sequence

                              [AAAGTTTTCTGGAAGGGTCAGTTTGTAGAGAGATCTATGCTGCGCACAGGCACAACCTTTAGGCAGCCACACGCTGGTCTCCTCGAACTCGAACCCTAGCCTTTTGCTGCTCCCTCCGGCCTCCACACGCGCGAGATCCCTTCCCCTCTCCTCCCCTCCCGGCGAGATGTCGTCGTCGGTCGGCGGCGGCGGCGGGCAGCAGTTCCGGTACACGCAGACGCCGTCCAAGGTGCTGCACCTGCGGAACCTGCCGTGGGAGTGCGCGGAGGAGGAGCTCGTCGAGCTCTGCAACCCCTTCGGCCGCATCGTCAACACCAAGTGCGGCGTCGGCGCCAACCGCAACCAGGCCTTCGTCGAGTTCACTGACATTAATCAAGCTATTTCGATGGTTTCTTACTTTGCATCATCTTCGGAACCAGCGCAAATCCGAGGCAAAACTGTTTACATTCAGTATTCAAACAGACAAGAAATAGTTAACAACAAGAGCCCTGGAGAGACTGCTGGAAATGTGTTGCTAGTTACTATAGAAGGTGTTCAAGCAAACGATGTCACCATCGATGTGATCCA-TCTGGTTTTCTCAGCTTTTGGATTTGTTCACAAAATAGCCACTTTTGAGAAGGCTGCAGGTTTTCAGGCACTGATTCAATACACAGATGCAGCCACAGCTTCTGCAGCAAGAGAAGCCTTAGATGGAAGAAGCATCCCAAGGTACTTGCTTCCAGAGCATGTAACATCTTGTTGTTTGCGTATTTCGTTCTCTGCGCATAAGGATCTGAATATCAAGTTCCAGTCACATCGCAGCAGGGATTACACCAACCCTTACCTTCCGGTTAATTCATCTGCAATAGATACGTTACAGCCTGCTGTTGGTGCCGATGGAAGGAAAGTGGAAGCTGAAGGCAATGTTCTTCTCGCATCAATTGAAAATATGCAATATGCAGTCACGGTGGATGTTCTCCATACTGTGTTCTCTGCATTTGGTACAGTCCAGAAAATAGCTATTTTTGAGAAGAACGGTGGAACACAAGCTTTGATTCAGTACCCTGATGTAACTACAGCTTCAGTTGCGAAGGAAGCATTGGAAGGGCATTGCATCTACGATGGTGGCTACTGTAAGCTCCACCTGTCATATTCTCGTCATACTGATCTCAATGTAAAGGCACACAGTGACAAGAGCAGGGATTACACAATCCCTCAAGGTGCGATGCAAGCAGTACCACAACCGCCTGGTGTACCA-ACAACATCTGCTGGGTGGCAAGGTAATCCACAAGCCGGTGGTGCATATGCACCACCT-GGAGCTGCTGCTCCAAACCACG-GCACAA-CAGGG-CAAGTGCCAAATTGGAATCCCGGGAACTCTGGGTATGCTCCAGCTCCA-GGAGCATATCCAGGTCAAATGTACTCGTCACCAAT-GCAGTATGGCGCATCA-GGGGGCTTCTCTGCTCCT-GCTGCCCCACCA-CA-AGAGTT-GCATACT-TCGCAGCAGATGCCGCCGCCTCAATAT-GGAAAT-CAGCC-TGGACCAGCAGGTGCACCAGGAACC-GGGCAACCACATCCAT-ATTAT-CGCTAAA-TTTAGATTCCT-ATT-CACAACTGGTACT-AT-GCCCT-TTCT-AATTAGTAACTTTGTGTACCTTTGCAATAGGGCAAAACCAGTTCCTTTTCCCTGTCTTTCTTCTCATGGAACCTTTTTTATAAATAAACTCTTCATCCAGTTGTTCTCATCCGCGGCACAAAATGAAGGGTTTTCATCGAAACTAAAAAAAAAA]

[+] EMBL AK101213             [AAAGTTTTCTGGAAGGGTCAGTTTGTAGAGAGATCTATGCTGCGCACAGGCACAACCTTTAGGCAGCCACACGCTGGTCTCCTCGAACTCGAACCCTAGCCTTTTGCTGCTCCCTCCGGCCTCCACACGCGCGAGATCCCTTCCCCTCTCCTCCCCTCCCGGCGAGATGTCGTCGTCGGTCGGCGGCGGCGGCGGGCAGCAGTTCCGGTACACGCAGACGCCGTCCAAGGTGCTGCACCTGCGGAACCTGCCGTGGGAGTGCGCGGAGGAGGAGCTCGTCGAGCTCTGCAACCCCTTCGGCCGCATCGTCAACACCAAGTGCGGCGTCGGCGCCAACCGCAACCAGGCCTTCGTCGAGTTCACTGACATTAATCAAGCTATTTCGATGGTTTCTTACTTTGCATCATCTTCGGAACCAGCGCAAATCCGAGGCAAAACTGTTTACATTCAGTATTCAAACAGACAAGAAATAGTTAACAACAAGAGCCCTGGAGAGACTGCTGGGAATGTGTTGCTAGTTACTATAGAAGGTGTTCAAGCAAACGATGTCACCATCGATGTGATCCA TCTGGTTTTCTCAGCTTTTGGATTTGTTCACAAAATAGCCACTTTTGAGAAGGCTGCAGGTTTTCAGGCACTGATTCAATACACAGATGCAGCCACAGCTTCTGCAGCAAGAGAAGCCTTAGATGGAAGAAGCATCCCAAGGTACTTGCTTCCAGAGCATGTAACATCTTGTTGTTTGCGTATTTCGTTCTCTGCGCATAAGGATCTGAATATCAAGTTCCAGTCACATCGCAGCAGGGATTACACCAACCCTTACCTTCCGGTTAATTCATCTGCAATAGATACGTTACAGCCTGCTGTTGGTGCCGATGGAAGGAAAGTGGAAGCTGAAGGCAATGTTCTTCTCGCATCAATTGAAAATATGCAATATGCAGTCACGGTGGATGTTCTCCATACTGTGTTCTCTGCATTTGGTACAGTCCAGAAAATAGCTATTTTTGAGAAGAACGGTGGAACACAAGCTTTGATTCAGTACCCTGATGTAACTACAGCTTCAGTTGCGAAGGAAGCATTGGAAGGGCATTGCATCTACGATGGTGGCTACTGTAAGCTCCACCTGTCATATTCTCGTCATACTGATCTCAATGTAAAGGCACACAGTGACAAGAGCAGGGATTACACAATCCCTCAAGGTGCGATGCAAGCAGTACCACAACCGCCTGGTGTACCA ACAACATCTGCTGGGTGGCAAGGTAATCCACAAGCCGGTGGTGCATATGCACCACCT GGAGCTGCTGCTCCAAACCACG GCACAA CAGGG CAAGTGCCAAATTGGAATCCCGGGAGCTCTGGGTATGCTCCAGCTCCA GGAGCATATCCAGGTCAAATGTACTCGTCACCAAT GCAGTATGGCGCATCA GGGGGCTTCTCTGCTCCT GCTGCCCCACCA CA AGAGTT GCATACT TCGCAGCAGATGCCGCCGCCTCAATAT GGAAAT CAGCC TGGACCAGCAGGTGCACCAGGAACC GGGCAACCACATCCAT ATTAT CGCTAAA TTTAGATTCCT ATT CACAACTGGTACT AT GCCCT TTCT AATTAGTAACTTTGTGTACCTTTGCAATAGGGCAAAACCAGTTCCTTTTCCCTGTCTTTCTTCTCATGGAACCTTTTTTATAAATAAACTCTTCATCCAGTTGTTCTCATCCGCGGCACAAAATGAAGG                         ]
[+] EMBL AK062562             [                                             ACAGGCACAACCTTTAGGCAGCCACACGCTGGTCTCCTCGAACTCGAACCCTAGCCTTTTGCTGCTCCCTCCGGCCTCCACACGCGCGAGATCCCTTCCCCTCTCCTCCCCTCCCGGCGAGATGTCGTCGTCGGTCGGCGGCGGCGGCGGGCAGCAGTTCCGGTACACGCAGACGCCGTCCAAGGTGCTGCACCTGCGGAACCTGCCGTGGGAGTGCGCGGAGGAGGAGCTCGTCGAGCTCTGCAACCCCTTCGGCCGCATCGTCAACACCAAGTGCGGCGTCGGCGCCAACCGCAACCAGGCCTTCGTCGAGTTCACTGACATTAATCAAGCTATTTCGATGGTTTCTTACTTTGCATCATCTTCGGAACCAGCGCAAATCCGAGGCAAAACTGTTTACATTCAGTATTCAAACAGACAAGAAATAGTTAACAACAAGAGCCCTGGAGAGACTGCTGGAAATGTGTTGCTAGTTACTATAGAAGGTGTTCAAGCAAACGATGTCACCATCGATGTGATCCA TCTGGTTTTCTCAGCTTTTGGATTTGTTCACAAAATAGCCACTTTTGAGAAGGCTGCAGGTTTTCAGGCACTGATTCAATACACAGATGCAGCCACAGCTTCTGCAGCAAGAGAAGCCTTAGATGGAAGAAGCATCCCAAGGTACTTGCTTCCAGAGCATGTAACATCTTGTTGTTTGCGTATTTCGTTCTCTGCGCATAAGGATCTGAATATCAAGTTCCAGTCACATCGCAGCAGGGATTACACCAACCCTTACCTTCCGGTTAATTCATCTGCAATAGATACGTTACAGCCTGCTGTTGGTGCCGATGGAAGGAAAGTGGAAGCTGAAGGCAATGTTCTTCTCGCATCAATTGAAAATATGCAATATGCAGTCACGGTGGATGTTCTCCATACTGTGTTCTCTGCATTTGGTACAGTCCAGAAAATAGCTATTTTTGAGAAGAACGGTGGAACACAAGCTTTGATTCAGTACCCTGATGTAACTACAGCTTCAGTTGCGAAGGAAGCATTGGAAGGGCATTGCATCTACGATGGTGGCTACTGTAAGCTCCACCTGTCATATTCTCGTCATACTGATCTCAATGTAAAGGCACACAGTGACAAGAGCAGGGATTACACAATCCCTCAAGGTGCGATGCAAGCAGTACCACAACCGCCTGGTGTACCA ACAACATCTGCTGGGTGGCAAGGTAATCCACAAGCCGGTGGTGCATATGCACCACCT GGAGCTGCTGCTCCAAACCACG GCACAA CAGGG CAAGTGCCAAATTGGAATCCCGGGAACTCTGGGTATGCTCCAGCTCCA GGAGCATATCCAGGTCAAATGTACTCGTCACCAAT GCAGTATGGCGCATCA GGGGGCTTCTCTGCTCCT GCTGCCCCACCA CA AGAGTT GCATACT TCGCAGCAGATGCCGCCGCCTCAATAT GGAAAT CAGCC TGGACCAGCAGGTGCACCAGGAACC GGGCAACCACATCCAT ATTAT CGCTAAA TTTAGATTCCT ATT CACAACTGGTACT AT GCCCT TTCT AATTAGTAACTTTGTGTACCTTTGCAATAGGGCAAAACCAGTTCCTTTTCCCTGTCTTTCTTCTCATGGAACCTTTTTTATAAATAAACTCTTCATCC                                                        ]
[+] EMBL CF305491             [                                                                                                   CCTTTTGCTGCTCCCTCCGGCCTCCACACGCGCGAGATCCCTTCCCCTCTCCTCCCCTCCCGGCGAGATGTCGTCGTCGGTCGGCGGCGGCGGCGGGCAGCAGTTCCGGTACACGCAGACGCCGTCCAAGGTGCTGCACTTGCGGAACCTGCCGTGGGAGTGCGCGGAGGAGGAGCTCGTCGAGCTCTGCAACCCCTTCGGCCGCATCGTCAACACCAAGTGCGGCGTCGGCGCCAACCGCAACCAGGCCTTCGTCGAGTTCACTGACATTAATCAAGCTATTTCGATGGTTTCTTACTTTGCATCATCTTCGGAACCAGCGCAAATCCGAGGCAAAACTGTTTACATTCAGTATTCAAACAGACAAGAAATAGTTAACAACAAGAGCCCTGGAGAGACTGCTGGAAATGTGTTGCTAGTTACTATAGAAGGTGTTCAAGCAAACGATGTCACCATCGATGTGATCCATTCTGGTTTTCTCAGCTTTTGGATTTGTTCACAAAATAGCCACTTTTGAGAAGGCTGCAGGTTTTCAGGCACTGATTCAATACACAGATGCAGCCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL C74961               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             AACACAAGCTTTGATTCAGTACCCTGATGTAACTACAGCTTCAGTTGCGAAGGAAGCATTGGAAGGGCATTGCATCTACGATGGTGGCTACTGTAAGCTCCACCTGTCATATTCTCGTCATACTGATCTCAATGTAAAGGCACACAGTGACAAGAGCAGGGATTACACAATCCCTCAAGGTGCGATGCAAGCAGTACCACAACCGCCTGGTGTACCA ACAACATCTGCTGGGTGGCAAGGTAATCCACAAGCCGGTGGTGCATATGCANCACCTGGGAGCTGCTGCTCCAAACCACG GCACAA CAGGG CAAGTGCCAAATTGGAATCCCGGGAACTCTGGGTATGCTCCANCTCCA GGAGCATATCCANGTCAAATGTACTCGTCACCAATGGCAGTATGGCGCATCA AGGGGCTTCTCTGCTCCTNGCTGCCCCACCA CA AGAGTTGGCATACTNTCGCAGCAGATGCNGCCGCCTCAATATGGGNAAT CAGCCTTGAACCAGCAAGTGCACCAGGAACCGGGGNAACCACATCCATNATTAT CGCTAAATTTTAGATTCCT AT                                                                                                                                                                                        ]
[+] EMBL CB096299             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     agggGGAAGGGCATTGCATCTACGATGGTGGCTATTGTAAGCTCCACCTGTCATATTCTCGTCATACTGATCTCAATGTAAAGGCACACAGTGACAAGAGCAGGGATTACACAATCCCTCAAGGTGCGATGCAAGCAGTACCACAACCGCCTGGTGTACCA ACAACATCTGCTGGGTGGCAAGGTAATCCACAAGCCGGTGGTGCATATGCACCACCT GGAGCTGCTGCTCCAAACCACG GCACAA CAGGG CAAGTGCCAAATTGGAATCCCGGGAACTCTGGGTATGCTCCAGCTCCA GGAGCATATCCAGGTCAAATGTACTCGTCACCAAT GCAGTATGGCGCATCA GGGGGCTTCTCTGCTCCT GCTGCCCCACCA CA AGAGTT GCATACT TCGCAGCAGATGCCGCCGCCTCAATAT GGAAAT CAGCC TGGACCAGCAGGTGCACCAGGAACC GGGCAACCACATCCAT ATTAT CGCTAAA TTTAGATTCCT ATT CACAACTGGTACT AT GCCCT TTCT AATTAGTAACTTTGTGTACCTTTGCAATAGGGCAAAACCAGTTCCTTTTCCCTGTCTTTCTTCTCATGGAACCTTTTTTATAAATAAACTCTTCATCCA                                                       ]
[-] EMBL CB680763             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ATTTACGATGGTGGCTACTGTAAGCTCCACCTGTCATATTCTCGTCATACTGATCTCAATGTAAAGGCACACAGTGACAAGAGCAGGGATTACACAATCCCTCAAGGTGCGATGCAAGCAGTACCACAACCGCCTGGTGTACCA ACAACATCTGCTGGGTGGCAAGGTAATCCACAAGCCGGTGGTGCATATGCACCACCT GGAGCTGCTGCTCCAAACCACG GCACAA CAGGG CAAGTGCCAAATTGGAATCCCGGGAACTCTGGGTATGCTCCAGCTCCA GGAGCATATCCAGGTCAAATGTACTCGTCACCAAT GCAGTATGGCGCATCA GGGGGCTTCTCTGCTCCT GCTGCCCCACCA CA AGAGTT GCATACT TCGCAGCAGATGCCGCCGCCTCAATAT GGAAAT CAGCC TGGACCAGCAGGTGCACCAGGAACC GGGCAACCACATCCAT ATTAT CGCTAAA TTTAGATTCCT ATT CACAACTGGTACT AT GCCCT TTCT AATTAGTAACTTTGTGTACCTTTGCAATAGGGCAAAACCAGTTCCTTTTCCCTGTCTTTCTTCTCATGGAACCTTTTTAAGAAAT                                                                     ]
[+] EMBL AA751034             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ACACAGTGACAAGAGCAGGGATTACACAATCCCTCAAGGTGCGATGCAAGCAGTACCACAACCGCCTGGTGTACCA ACAACATCTGCTGGGTGGCAAGGTAATCCACAAGCCGGTGGTGCATATGCA     T GGAGCTGCTGCT CAAACCACGCGCACAA CAGGGCCAAGTGCCAAATTGGAATCCCGGGAACTCTGGGTATGCctc                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BQ907862             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CCCTCAAGGTGCGATGCAAGCAGTACCACAACCGCCTGGTGTACCATACAACATCTGCT GGTGGCAAGGTAATCCACAAGCCGGTGGTGCATATGCACCACCT GGAGCTGCTGCTCCAAACCACG GCACAATCAGGG CAAGTGCCAAATTGGAATCCCGGGAACTCTGGGTATGCTCCAGCTCCA GGAGCATATCCAGGTCAAATGTACTCGTCACCAAT GCAGTATGGCGCATCA GGGGGCTTCTCTGCTCCT GCTGCCCCACCA CA AGAGTT GCATACT TCGCAGCAGATGCCGCCGCCTCAATAT GGAAATGCAGCC TGGACCAGCAGGTGCACCAGGAACC GGGCAACCACATCCAT ATTATGCGCTAAA TTTAGATTCCTGATTGCACAACTGGTACTGATGGCCCTGTTCTGAATTAGTAACTTTGTGTACCTTTGCAATAGGGCAAAACCAGTTCCTTTTCCCTGTCTTTCTTCTCATGGAACCTTTTTTATAAATAAACTCTTCATCCAGTTGTTCTCAaaaaaaa                                      ]
[+] EMBL BM421510             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ACCN ACAACATCT CT GGTGCCAAGGTAATCCCCAAGCCGGTGGTGCATATGCACCACCT GGAGCTGCTGCTCCCAACCCCG GCACAA CAGGG CAAGTGCCCAATTGGAATCCCGGGAACTCTGGTTATGCTCCAGCTCCACGGAGCATATCCAGGTCAAATGTACTCGTCACCCAT GCAGTATGGCGCATCACGGGGGCTTCTCTGCTCCT GCTGCCCCCCCACCACAGAGTT GCATACT TCGCAGCAGATGCCGCCGCCTCAATAT GGAAAT CAGCC TGGACCAGCAGGTGCACCAGGAACC GGGCAACCACATCCAT ATTAT CGCTAAA TTTAGATTCCT ATT CACAACTGGTACT AT GCCCT TTCT AATTAGTAACTTTGTGTACCTTTGCCATAGGNCCAAACCCGTTCCTTTTCCCTGTCTTTCTTCTCATGGAACCTTTTTTATAAATAAACTCTTCATCCNGTTGTTCTCATCCGCGGCNCCAAATGAAGGGTTTTCATCGAAACTAAAAAAAAAA]




>consensus_13236#0
AAAGTTTTCTGGAAGGGTCAGTTTGTAGAGAGATCTATGCTGCGCACAGGCACAACCTTT
AGGCAGCCACACGCTGGTCTCCTCGAACTCGAACCCTAGCCTTTTGCTGCTCCCTCCGGC
CTCCACACGCGCGAGATCCCTTCCCCTCTCCTCCCCTCCCGGCGAGATGTCGTCGTCGGT
CGGCGGCGGCGGCGGGCAGCAGTTCCGGTACACGCAGACGCCGTCCAAGGTGCTGCACCT
GCGGAACCTGCCGTGGGAGTGCGCGGAGGAGGAGCTCGTCGAGCTCTGCAACCCCTTCGG
CCGCATCGTCAACACCAAGTGCGGCGTCGGCGCCAACCGCAACCAGGCCTTCGTCGAGTT
CACTGACATTAATCAAGCTATTTCGATGGTTTCTTACTTTGCATCATCTTCGGAACCAGC
GCAAATCCGAGGCAAAACTGTTTACATTCAGTATTCAAACAGACAAGAAATAGTTAACAA
CAAGAGCCCTGGAGAGACTGCTGGAAATGTGTTGCTAGTTACTATAGAAGGTGTTCAAGC
AAACGATGTCACCATCGATGTGATCCATCTGGTTTTCTCAGCTTTTGGATTTGTTCACAA
AATAGCCACTTTTGAGAAGGCTGCAGGTTTTCAGGCACTGATTCAATACACAGATGCAGC
CACAGCTTCTGCAGCAAGAGAAGCCTTAGATGGAAGAAGCATCCCAAGGTACTTGCTTCC
AGAGCATGTAACATCTTGTTGTTTGCGTATTTCGTTCTCTGCGCATAAGGATCTGAATAT
CAAGTTCCAGTCACATCGCAGCAGGGATTACACCAACCCTTACCTTCCGGTTAATTCATC
TGCAATAGATACGTTACAGCCTGCTGTTGGTGCCGATGGAAGGAAAGTGGAAGCTGAAGG
CAATGTTCTTCTCGCATCAATTGAAAATATGCAATATGCAGTCACGGTGGATGTTCTCCA
TACTGTGTTCTCTGCATTTGGTACAGTCCAGAAAATAGCTATTTTTGAGAAGAACGGTGG
AACACAAGCTTTGATTCAGTACCCTGATGTAACTACAGCTTCAGTTGCGAAGGAAGCATT
GGAAGGGCATTGCATCTACGATGGTGGCTACTGTAAGCTCCACCTGTCATATTCTCGTCA
TACTGATCTCAATGTAAAGGCACACAGTGACAAGAGCAGGGATTACACAATCCCTCAAGG
TGCGATGCAAGCAGTACCACAACCGCCTGGTGTACCAACAACATCTGCTGGGTGGCAAGG
TAATCCACAAGCCGGTGGTGCATATGCACCACCTGGAGCTGCTGCTCCAAACCACGGCAC
AACAGGGCAAGTGCCAAATTGGAATCCCGGGAACTCTGGGTATGCTCCAGCTCCAGGAGC
ATATCCAGGTCAAATGTACTCGTCACCAATGCAGTATGGCGCATCAGGGGGCTTCTCTGC
TCCTGCTGCCCCACCACAAGAGTTGCATACTTCGCAGCAGATGCCGCCGCCTCAATATGG
AAATCAGCCTGGACCAGCAGGTGCACCAGGAACCGGGCAACCACATCCATATTATCGCTA
AATTTAGATTCCTATTCACAACTGGTACTATGCCCTTTCTAATTAGTAACTTTGTGTACC
TTTGCAATAGGGCAAAACCAGTTCCTTTTCCCTGTCTTTCTTCTCATGGAACCTTTTTTA
TAAATAAACTCTTCATCCAGTTGTTCTCATCCGCGGCACAAAATGAAGGGTTTTCATCGA
AACTAAAAAAAAAA

consensusID : consensus_13236#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 659
fasta sequence

                              [CCCTGCCCTTATTGCTGGAAATGTGTTGCTAGTTACTATAGAAGGTGTTCAAGCAAACGATGTCACCATCGATGTGATCCATCTGGTTTTCTCAGCTTTTGGATTTGTTCACAAAATAGCCACTTTTGAGAAGGCTGCAGGTTTTCAGGCACTGATTCAATACACAGATGCAGCCACAGCTTCTGCAGCAAGAGAAGCCTTAGATGGAAGAAGCATCCCAAGGTACTTGCTTCCAGAGCATGTAACATCTTGTTGTTTGCGTATTTCGTTCTCTGCGCATAAGGATCTGAATATCAAGTTCCAGTCACATCGCAGCAGGGATTACACCAACCCTTACCTTCCGGTTAATTCATCTGCAATAGATACGTTACAGCCTGCTGTTGGTGCCGATGGAAGGAAAGTGGAAGCTGAAGGCAATGTTCTTCTCGCATCAATTGAAAATATGCAATATGCAGTCACGGTGGATGTTCTCCATACTGTGTTCTCTGCATTTGGTACAGTCCAGAAAATAGCTATTTTTGAGAAGAACGGTGGAACACAAGCTTTGATTCAGTACCCTGATGTAACTACAGCTTCAGTTGCGAAGGAAGCATTGGAAGGGCATTGCATTTACGATGGTGGCTACTGTAAGCTCCCACCTGTCCTATTCTCGTCATACT]

[+] EMBL CB680762             [CCCTGCCCTTATTGCTGGAAATGTGTTGCTAGTTACTATAGAAGGTGTTCAAGCAAACGATGTCACCATCGATGTGATCCATCTGGTTTTCTCAGCTTTTGGATTTGTTCACAAAATAGCCACTTTTGAGAAGGCTGCAGGTTTTCAGGCACTGATTCAATACACAGATGCAGCCACAGCTTCTGCAGCAAGAGAAGCCTTAGATGGAAGAAGCATCCCAAGGTACTTGCTTCCAGAGCATGTAACATCTTGTTGTTTGCGTATTTCGTTCTCTGCGCATAAGGATCTGAATATCAAGTTCCAGTCACATCGCAGCAGGGATTACACCAACCCTTACCTTCCGGTTAATTCATCTGCAATAGATACGTTACAGCCTGCTGTTGGTGCCGATGGAAGGAAAGTGGAAGCTGAAGGCAATGTTCTTCTCGCATCAATTGAAAATATGCAATATGCAGTCACGGTGGATGTTCTCCATACTGTGTTCTCTGCATTTGGTACAGTCCAGAAAATAGCTATTTTTGAGAAGAACGGTGGAACACAAGCTTTGATTCAGTACCCTGATGTAACTACAGCTTCAGTTGCGAAGGAAGCATTGGAAGGGCATTGCATTTACGATGGTGGCTACTGTAAGCTCCCACCTGTCCTATTCTCGTCATACT]




>consensus_13236#1
CCCTGCCCTTATTGCTGGAAATGTGTTGCTAGTTACTATAGAAGGTGTTCAAGCAAACGA
TGTCACCATCGATGTGATCCATCTGGTTTTCTCAGCTTTTGGATTTGTTCACAAAATAGC
CACTTTTGAGAAGGCTGCAGGTTTTCAGGCACTGATTCAATACACAGATGCAGCCACAGC
TTCTGCAGCAAGAGAAGCCTTAGATGGAAGAAGCATCCCAAGGTACTTGCTTCCAGAGCA
TGTAACATCTTGTTGTTTGCGTATTTCGTTCTCTGCGCATAAGGATCTGAATATCAAGTT
CCAGTCACATCGCAGCAGGGATTACACCAACCCTTACCTTCCGGTTAATTCATCTGCAAT
AGATACGTTACAGCCTGCTGTTGGTGCCGATGGAAGGAAAGTGGAAGCTGAAGGCAATGT
TCTTCTCGCATCAATTGAAAATATGCAATATGCAGTCACGGTGGATGTTCTCCATACTGT
GTTCTCTGCATTTGGTACAGTCCAGAAAATAGCTATTTTTGAGAAGAACGGTGGAACACA
AGCTTTGATTCAGTACCCTGATGTAACTACAGCTTCAGTTGCGAAGGAAGCATTGGAAGG
GCATTGCATTTACGATGGTGGCTACTGTAAGCTCCCACCTGTCCTATTCTCGTCATACT

consensusID : consensus_13236#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 568
fasta sequence

                              [AAAGGCACACAGTGACAAGAGCAGGGATTACACAATCCCTCAAGGTGCGATGCAAGCAGTACCACAACCGCCTGGTGTACCAACAACATCTGCTGGGTGGCAAGGTAATCCACAAGCCGGTGGTGCATATGCACCACTGNGAGCTGCTGCTCCAAACCACGGCACAACAGGGCAAGTGCCAAATTGGAATCCCGGGAACTCTGGGTATGCTCCAGCTCCAGGAGCATATCCAGGTCAAATGTACTCGTCACCAATGCAGTATGGCGCATCAGGGGGCTTCTCTGCTCCTGCTGCCCCACCACAAGAGTTGCATACTTCGCAGCAGATGCCGCCGCCTCAATATGGAAATCAGCCTGGACCAGCAGGTGCACCAGGAACCGGGCAACCACATCCATATTATCGCTTAAATTTAGATTCCTATTCACAACTGGTACTATGCCCTTTCTAATTAGTAACTTTGTGTACCTTTGCAATAGGGCAAAACCAGTTCCTTTTCCCTGTCTTTCTTCTCATGGAACCTTTTTTATAAATAAACTCTTCATCCAGTTGTTCTAAAAAAAAAAAAAAA]

[+] EMBL AU057514             [AAAGGCACACAGTGACAAGAGCAGGGATTACACAATCCCTCAAGGTGCGATGCAAGCAGTACCACAACCGCCTGGTGTACCAACAACATCTGCTGGGTGGCAAGGTAATCCACAAGCCGGTGGTGCATATGCACCACTGNGAGCTGCTGCTCCAAACCACGGCACAACAGGGCAAGTGCCAAATTGGAATCCCGGGAACTCTGGGTATGCTCCAGCTCCAGGAGCATATCCAGGTCAAATGTACTCGTCACCAATGCAGTATGGCGCATCAGGGGGCTTCTCTGCTCCTGCTGCCCCACCACAAGAGTTGCATACTTCGCAGCAGATGCCGCCGCCTCAATATGGAAATCAGCCTGGACCAGCAGGTGCACCAGGAACCGGGCAACCACATCCATATTATCGCTTAAATTTAGATTCCTATTCACAACTGGTACTATGCCCTTTCTAATTAGTAACTTTGTGTACCTTTGCAATAGGGCAAAACCAGTTCCTTTTCCCTGTCTTTCTTCTCATGGAACCTTTTTTATAAATAAACTCTTCATCCAGTTGTTCTAAAAAAAAAAAAAAA]




>consensus_13236#2
AAAGGCACACAGTGACAAGAGCAGGGATTACACAATCCCTCAAGGTGCGATGCAAGCAGT
ACCACAACCGCCTGGTGTACCAACAACATCTGCTGGGTGGCAAGGTAATCCACAAGCCGG
TGGTGCATATGCACCACTGNGAGCTGCTGCTCCAAACCACGGCACAACAGGGCAAGTGCC
AAATTGGAATCCCGGGAACTCTGGGTATGCTCCAGCTCCAGGAGCATATCCAGGTCAAAT
GTACTCGTCACCAATGCAGTATGGCGCATCAGGGGGCTTCTCTGCTCCTGCTGCCCCACC
ACAAGAGTTGCATACTTCGCAGCAGATGCCGCCGCCTCAATATGGAAATCAGCCTGGACC
AGCAGGTGCACCAGGAACCGGGCAACCACATCCATATTATCGCTTAAATTTAGATTCCTA
TTCACAACTGGTACTATGCCCTTTCTAATTAGTAACTTTGTGTACCTTTGCAATAGGGCA
AAACCAGTTCCTTTTCCCTGTCTTTCTTCTCATGGAACCTTTTTTATAAATAAACTCTTC
ATCCAGTTGTTCTAAAAAAAAAAAAAAA

consensusID : consensus_13236#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 170
fasta sequence

                              [TGATCTCAATGTAAAGGCACACAGTGACAAGAGCAGGGATTACACAATCCCTCAAGGTGCGATGCAAGCAGTACCACAACCGCCTGGTGTACCAACAACATCTCTGGGTGGCAAGGTAATCACAACCGTGTGCTTCATGGACTCTCTCAAACACACACACAATCAATATC]

[+] EMBL AA751052             [TGATCTCAATGTAAAGGCACACAGTGACAAGAGCAGGGATTACACAATCCCTCAAGGTGCGATGCAAGCAGTACCACAACCGCCTGGTGTACCAACAACATCTCTGGGTGGCAAGGTAATCACAACCGTGTGCTTCATGGACTCTCTCAAACACACACACAATCAATATC]




>consensus_13236#3
TGATCTCAATGTAAAGGCACACAGTGACAAGAGCAGGGATTACACAATCCCTCAAGGTGC
GATGCAAGCAGTACCACAACCGCCTGGTGTACCAACAACATCTCTGGGTGGCAAGGTAAT
CACAACCGTGTGCTTCATGGACTCTCTCAAACACACACACAATCAATATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13236#2      ------------------------------------------------------------
consensus_13236#3      ------------------------------------------------------------
consensus_13236#0      AAAGTTTTCTGGAAGGGTCAGTTTGTAGAGAGATCTATGCTGCGCACAGGCACAACCTTT 60
consensus_13236#1      ------------------------------------------------------------
                                                                                   

consensus_13236#2      ------------------------------------------------------------
consensus_13236#3      ------------------------------------------------------------
consensus_13236#0      AGGCAGCCACACGCTGGTCTCCTCGAACTCGAACCCTAGCCTTTTGCTGCTCCCTCCGGC 120
consensus_13236#1      ------------------------------------------------------------
                                                                                   

consensus_13236#2      ------------------------------------------------------------
consensus_13236#3      ------------------------------------------------------------
consensus_13236#0      CTCCACACGCGCGAGATCCCTTCCCCTCTCCTCCCCTCCCGGCGAGATGTCGTCGTCGGT 180
consensus_13236#1      ------------------------------------------------------------
                                                                                   

consensus_13236#2      ------------------------------------------------------------
consensus_13236#3      ------------------------------------------------------------
consensus_13236#0      CGGCGGCGGCGGCGGGCAGCAGTTCCGGTACACGCAGACGCCGTCCAAGGTGCTGCACCT 240
consensus_13236#1      ------------------------------------------------------------
                                                                                   

consensus_13236#2      ------------------------------------------------------------
consensus_13236#3      ------------------------------------------------------------
consensus_13236#0      GCGGAACCTGCCGTGGGAGTGCGCGGAGGAGGAGCTCGTCGAGCTCTGCAACCCCTTCGG 300
consensus_13236#1      ------------------------------------------------------------
                                                                                   

consensus_13236#2      ------------------------------------------------------------
consensus_13236#3      ------------------------------------------------------------
consensus_13236#0      CCGCATCGTCAACACCAAGTGCGGCGTCGGCGCCAACCGCAACCAGGCCTTCGTCGAGTT 360
consensus_13236#1      ------------------------------------------------------------
                                                                                   

consensus_13236#2      ------------------------------------------------------------
consensus_13236#3      ------------------------------------------------------------
consensus_13236#0      CACTGACATTAATCAAGCTATTTCGATGGTTTCTTACTTTGCATCATCTTCGGAACCAGC 420
consensus_13236#1      ------------------------------------------------------------
                                                                                   

consensus_13236#2      ------------------------------------------------------------
consensus_13236#3      ------------------------------------------------------------
consensus_13236#0      GCAAATCCGAGGCAAAACTGTTTACATTCAGTATTCAAACAGACAAGAAATAGTTAACAA 480
consensus_13236#1      ------------------------------------------------------------
                                                                                   

consensus_13236#2      ------------------------------------------------------------
consensus_13236#3      ------------------------------------------------------------
consensus_13236#0      CAAGAGCCCTGGAGAGACTGCTGGAAATGTGTTGCTAGTTACTATAGAAGGTGTTCAAGC 540
consensus_13236#1      ------------------------------------------------------------
                                                                                   

consensus_13236#2      ------------------------------------------------------------
consensus_13236#3      ------------------------------------------------------------
consensus_13236#0      AAACGATGTCACCATCGATGTGATCCATCTGGTTTTCTCAGCTTTTGGATTTGTTCACAA 600
consensus_13236#1      ------------------------------------------------------------
                                                                                   

consensus_13236#2      ------------------------------------------------------------
consensus_13236#3      ------------------------------------------------------------
consensus_13236#0      AATAGCCACTTTTGAGAAGGCTGCAGGTTTTCAGGCACTGATTCAATACACAGATGCAGC 660
consensus_13236#1      ------------------------------------------------------------
                                                                                   

consensus_13236#2      ------------------------------------------------------------
consensus_13236#3      ------------------------------------------------------------
consensus_13236#0      CACAGCTTCTGCAGCAAGAGAAGCCTTAGATGGAAGAAGCATCCCAAGGTACTTGCTTCC 720
consensus_13236#1      ------------------------------------------------------------
                                                                                   

consensus_13236#2      ------------------------------------------------------------
consensus_13236#3      ------------------------------------------------------------
consensus_13236#0      AGAGCATGTAACATCTTGTTGTTTGCGTATTTCGTTCTCTGCGCATAAGGATCTGAATAT 780
consensus_13236#1      ------------------------------------------------------------
                                                                                   

consensus_13236#2      ------------------------------------------------------------
consensus_13236#3      ------------------------------------------------------------
consensus_13236#0      CAAGTTCCAGTCACATCGCAGCAGGGATTACACCAACCCTTACCTTCCGGTTAATTCATC 840
consensus_13236#1      ------------------------------------------------------------
                                                                                   

consensus_13236#2      ------------------------------------------------------------
consensus_13236#3      ------------------------------------------------------------
consensus_13236#0      TGCAATAGATACGTTACAGCCTGCTGTTGGTGCCGATGGAAGGAAAGTGGAAGCTGAAGG 900
consensus_13236#1      ------------------------------------------------------------
                                                                                   

consensus_13236#2      ------------------------------------------------------------
consensus_13236#3      ------------------------------------------------------------
consensus_13236#0      CAATGTTCTTCTCGCATCAATTGAAAATATGCAATATGCAGTCACGGTGGATGTTCTCCA 960
consensus_13236#1      ------------------------------------------------------------
                                                                                   

consensus_13236#2      ------------------------------------------------------------
consensus_13236#3      ------------------------------------------------------------
consensus_13236#0      TACTGTGTTCTCTGCATTTGGTACAGTCCAGAAAATAGCTATTTTTGAGAAGAACGGTGG 1020
consensus_13236#1      ------------------------------------------------------------
                                                                                   

consensus_13236#2      ------------------------------------------------------------
consensus_13236#3      ------------------------------------------------------------
consensus_13236#0      AACACAAGCTTTGATTCAGTACCCTGATGTAACTACAGCTTCAGTTGCGAAGGAAGCATT 1080
consensus_13236#1      ------------------------------------------------------------
                                                                                   

consensus_13236#2      ------------------------------------------------------------
consensus_13236#3      ------------------------------------------------------------
consensus_13236#0      GGAAGGGCATTGCATCTACGATGGTGGCTACTGTAAGCTCCACCTGTCATATTCTCGTCA 1140
consensus_13236#1      ------------------------------------------------------------
                                                                                   

consensus_13236#2      ---------------AAAGGCACACAGTGACAAGAGCAGGGATTACACAATCCCTCAAGG 45
consensus_13236#3      ---TGATCTCAATGTAAAGGCACACAGTGACAAGAGCAGGGATTACACAATCCCTCAAGG 57
consensus_13236#0      TACTGATCTCAATGTAAAGGCACACAGTGACAAGAGCAGGGATTACACAATCCCTCAAGG 1200
consensus_13236#1      ------CCCTGCCCTTATTGCTGGAAATG-TGTTGCTAGTTACTATAGAAGGTGTTCAAG 53
                                       *  **    * **        **  * ** * **    *  * *

consensus_13236#2      TG--CGATGCAAGCAGTACCACAA-CCGCCTGGTGTACCAACAACATCTGCTGGGTGGCA 102
consensus_13236#3      TG--CGATGCAAGCAGTACCACAA-CCGCCTGGTGTACCAACAACATCT-CTGGGTGGCA 113
consensus_13236#0      TG--CGATGCAAGCAGTACCACAA-CCGCCTGGTGTACCAACAACATCTGCTGGGTGGCA 1257
consensus_13236#1      CAAACGATGTCACCATCGATGTGATCCATCTGGTTTTCTCAGCTTTTGGATTTGTTCACA 113
                           *****  * **        * **  ***** * *  *     *    * * *  **

consensus_13236#2      AGGTAATCC------ACAAGCCGGT-GGTGCATATGCACCA---CTGNGAGCTGCTGCTC 152
consensus_13236#3      AGGTAATC-------ACAACCGTGT-GCTTCATGGACTCTC---TCAAACACACACACAA 162
consensus_13236#0      AGGTAATCC------ACAAGCCGGT-GGTGCATATGCACCA---CCTGGAGCTGCTGCTC 1307
consensus_13236#1      AAATAGCCACTTTTGAGAAGGCTGCAGGTTTTCAGGCACTGATTCAATACACAGATGCAG 173
                       *  **  *       * **    *  * *       * *            *     *  

consensus_13236#2      CAAACCACGGCACAACAGGGCAAGTGCCAAATTGGAATCCCGGGAACTCTGGGTATGCTC 212
consensus_13236#3      TCAATATC---------------------------------------------------- 170
consensus_13236#0      CAAACCACGGCACAACAGGGCAAGTGCCAAATTGGAATCCCGGGAACTCTGGGTATGCTC 1367
consensus_13236#1      CCACAGCTTCTGCAGCAAGAGAAGCCTTAGATGGAAGAAGCATCCCAAGGTACTTGCTTC 233
                         *                                                         

consensus_13236#2      CAGCTCCAGGAGCATATCCAGGTCAAATGTACTCGTCACCAATGCAGTATGGCGC-ATCA 271
consensus_13236#3      ------------------------------------------------------------
consensus_13236#0      CAGCTCCAGGAGCATATCCAGGTCAAATGTACTCGTCACCAATGCAGTATGGCGC-ATCA 1426
consensus_13236#1      CAGAGCATGTAACATCTTGTTGTTTGCGTATTTCGTTCTCTGCGCATAAGGATCTGAATA 293
                                                                                   

consensus_13236#2      GGGGGCTTCTCTGCTCCTGCTGCCCCACCACAAGAGTTGCATACTTCGCAGCAGATGCCG 331
consensus_13236#3      ------------------------------------------------------------
consensus_13236#0      GGGGGCTTCTCTGCTCCTGCTGCCCCACCACAAGAGTTGCATACTTCGCAGCAGATGCCG 1486
consensus_13236#1      TCAAGTTCCAGTCACATCGCAGCAGGGATTACACCAACCCTTACCTTCCGGTTAATTCAT 353
                                                                                   

consensus_13236#2      CCGCCTCAATATGGAAATCAGCCTGGACCAGCAGGTGCACCAGGAACCGGGCAACCACAT 391
consensus_13236#3      ------------------------------------------------------------
consensus_13236#0      CCGCCTCAATATGGAAATCAGCCTGGACCAGCAGGTGCACCAGGAACCGGGCAACCACAT 1546
consensus_13236#1      CTGCAATAGATACGTTACAGCCTGCTGTTGGTGCCGATGGAAGGAAAGTGGAAGCTGAAG 413
                                                                                   

consensus_13236#2      CCATATTATCGCTTAAAT---TTAGATTCCTATTCACAACTGGTACTATGCCCTTTCTAA 448
consensus_13236#3      ------------------------------------------------------------
consensus_13236#0      CCATATTATCGCT-AAAT---TTAGATTCCTATTCACAACTGGTACTATGCCCTTTCTAA 1602
consensus_13236#1      GCAATGTTCTTCTCGCATCAATTGAAAATATGCAATATGCAGTCACGGTGGATGTTCTCC 473
                                                                                   

consensus_13236#2      TTAGTAACTTTGTGTACCTTTGCAATAGGGCAAAACCAGTTCCTTTTCCCTGTCTTTCTT 508
consensus_13236#3      ------------------------------------------------------------
consensus_13236#0      TTAGTAACTTTGTGTACCTTTGCAATAGGGCAAAACCAGTTCCTTTTCCCTGTCTTTCTT 1662
consensus_13236#1      ATACTG-TGTTCTCTGCATTTGGTACAGTCCAGAAAATAGCTATTTTTGAGAAGAACGGT 532
                                                                                   

consensus_13236#2      CTCATGGAACCTTTTTTATAAATAAACTCTTCATCCAGTTGTTCTAAAAAAAAAAAAAAA 568
consensus_13236#3      ------------------------------------------------------------
consensus_13236#0      CTCATGGAACCTTTTTTATAAATAAACTCTTCATCCAGTTGTTCTCATCCGCGGCACAAA 1722
consensus_13236#1      GGAACACAAGCTTTGATTCAGTACCCTGATGTAACTACAGCTTCAGTTGCGAAGGAAGCA 592
                                                                                   

consensus_13236#2      ------------------------------------------------------------
consensus_13236#3      ------------------------------------------------------------
consensus_13236#0      ATGAAGGGTTTTCATCGAAACTAAAAAAAAAA---------------------------- 1754
consensus_13236#1      TTGGAAGGGCATTGCATTTACGATGGTGGCTACTGTAAGCTCCCACCTGTCCTATTCTCG 652
                                                                                   

consensus_13236#2      -------
consensus_13236#3      -------
consensus_13236#0      -------
consensus_13236#1      TCATACT 659