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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13249#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 2063 fasta sequence
[ATTGGTTATTAGTGGGAGCGTGCATGCCTCCATTTCTGCCGCTATAAATACTCATCTCATCTCATCATCCACCATCAGTCCGTGCAGTTTGGAGCCCACACACCACGATCTCCCGTACCTTCTCTCTGCGAGATGGGGAGGATAAAGAGTAGTAGTGGGCGATGCAGCACGGCGAGGCTGGAGGCGGTCGCCGTCCTCGTCGTCGTCTTCGGCGTCGCGTCGTCGTCGCTGCGAGGATGCATTGCGCAGCAGAGCGGAGGAGGGCTAACCAGGGGCAGCTTCCCCGAGGGGTTCGTCTTCGGCACCGCCTCCGCCGCGTACCAGTACGAGGGAGCTGTGAAGGAGGACGGGAGAGGGCAGACCATCTGGGACACGTTCGCGCACACCTTTGGAAAGATCACCGACTTCAGCAATGCTGATGTTGCAGTTGATCAGTACCACCGTTTCGAGGAGGATATACAGCTCATGGCAGACATGGGGATGGATGCGTATCGGTTCTCGATAGCATGGTCAAGAATCTACCCAAATGGTGTTGGTCAAGTCAATCAAGCTGGTATCGACCACTACAACAAGCTGATCGATGCACTTCTAGCAAAAGGAATTCAGCCATATGTGACACTCTACCACTGGGACCTCCCCCAGGCCCTTGAAGACAAGTACAAGGGCTGGCTTGACAGGCAGATAGTGGACGATTTCGCGGCGTACGCGGAGACGTGCTTCAGGGAGTTCGGGGACAGGGTGAAGCACTGGATCACGCTCAACGAGCCGCACACGGTGGCCATCCAGGGCTACGACGCAGGGCTCCAGGCCCCCGGCCGCTGCTCCGTGCTGCTCCACCTCTACTGCAAGGCCGGCAACTCCGGCACCGAGCCCTACGTCGTCGCCCACCACTTCATCCTCGCCCACGCCGCCGCCGCCAGCATCTACAGGACAAAATACAAGGCGACGCAGAACGGGCAGCTTGGGATAGCGTTCGACGTGATGTGGTTCGAGCCGATGTCCAACACCACGATCGACATCGAGGCGGCCAAGAGAGCGCAGGAGTTTCAGCTAGGATGGTTTGCTGATCCGTTCTTCTTCGGCGACTACCCGGCGACGATGAGGGCGAGGGTGGGGGAGAGGCTGCCGAGGTTCACGGCGGATGAGGCCGCCGTCGTCAAGGGGGCGCTGGATTTCGTCGGCATAAACCACTACACCACCTACTACACGAGGCACAACAACACCAACATCATCGGGACATTGCTCAACAACACCTTGGCAGACACCGGCACCGTCAGCCTCCCATTCAAGAATGGGAAGCCAATTGGAGATAGGGCAAATTCGATATGGCTGTACATTGTGCCCCGAGGGATGAGGAGCCTGATGAACTATGTCAAGGAAAGGTACAACAGCCCACCAGTGTACATCACTGAAAACGGGATGGATGACAGCAACAACCCGTTCATTTCCATCAAGGACGCCCTCAAGGACAGCAAGAGGATCAAATACCACAATGACTACCTCACCAATCTGGCTGCTTCCATCAAGGAGGACGGGTGCGACGTACGTGGGTACTTCGCGTGGTCTCTGCTGGACAACTGGGAGTGGGCGGCCGGATACTCCTCGAGATTCGGGCTCTACTTCGTGGACTACAAGGATAACCTCAAGAGATACCCCAAGAACTCGGTGCAGTGGTTCAAGGCCCTCCTGAAGACCTGAACTCCAGCTGAGAAGTAGTGCTACAATAGTTTGGGCGCCATTTCCATACATCCGATAGATTTATTGGTCTGCACATATACGAATATACGATACCCTGCATATCTCGGAAATGTTTTGTGGTTTTTGTTTTGTTTGTGATACGATAGAATGTATCACTGAATCGTCTGGTCTGTTAGCACACGAGTGAAAAGGGGTAGTACTGCACTCTGCACCTTGTCAGCTTCAAATTGGAAGTCCGGATTCGGCTAATGCAGAGGGTGGCATTAGCTCCAATCCTATCCATCTATCTCTATTCAACGGCTGTGATTAGTTAAACATCTTTCTTATTTTTGCTGTTCGTATATTTTGACAGGGAGGAGATGGTG]
[+] EMBL AY129294 [ATTGGTTATTAGTGGGAGCGTGCATGCCTCCATTTCTGCCGCTATAAATACTCATCTCATCTCATCATCCACCATCAGTCCGTGCAGTTTGGAGCCCACACACCACGATCTCCCGTACCTTCTCTCTGCGAGATGGGGAGGATAAAGAGTAGTAGTGGGCGATGCAGCACGGCGAGGCTGGAGGCGGTCGCCGTCCTCGTCGTCGTCTTCGGCGTCGCGTCGTCNTCGCTGCGAGGATGCATTGCGCAGCAGAGCGGAGGAGGGCTAACCAGGGGCAGCTTCCCCGAGGGGTTCGTCTTCGGCACCGCCTCCGCCGCGTACCAGTACGAGGGAGCTGTGAAGGAGGACGGGAGAGGGCAGACCATCTGGGACACGTTCGCGCACACCTTTGGAAAGATCACCGACTTCAGCAATGCTGATGTTGCAGTTGATCAGTACCACCGTTTCGAGGAGGATATACAGCTCATGGCAGACATGGGGATGGATGCGTATCGGTTCTCGATAGCATGGTCAAGAATCTACCCAAATGGTGTTGGTCAAGTCAATCAAGCTGGTATCGACCACTACAACAAGCTGATCGATGCACTTCTAGCAAAAGGAATTCAGCCATATGTGACACTCTACCACTGGGACCTCCCCCAGGCCCTTGAAGACAAGTACAAGGGCTGGCTTGACAGGCAGATAGTGGACGATTTCGCGGCGTACGCGGAGACGTGCTTCAGGGAGTTCGGGGACAGGGTGAAGCACTGGATCACGCTCAACGAGCCGCACACGGTGGCCATCCAGGGCTACGACGCAGGGCTCCAGGCCCCCGGCCGCTGCTCCGTGCTGCTCCACCTCTACTGCAAGGCCGGCAACTCCGGCACCGAGCCCTACGTCGTCGCCCACCACTTCATCCTCGCCCACGCCGCCGCCGCCAGCATCTACAGGACAAAATACAAGGCGACGCAGAACGGGCAGCTTGGGATAGCGTTCGACGTGATGTGGTTCGAGCCGATGTCCAACACCACGATCGACATCGAGGCGGCCAAGAGAGCGCAGGAGTTTCAGCTAGGATGGTTTGCTGATCCGTTCTTCTTCGGCGACTACCCGGCGACGATGAGGGCGAGGGTGGGGGAGAGGCTGCCGAGGTTCACGGCGGATGAGGCCGCCGTCGTCAAGGGGGCGCTGGATTTCGTCGGCATAAACCACTACACCACCTACTACACGAGGCACAACAACACCAACATCATCGGGACATTGCTCAACAACACCTTGGCAGACACCGGCACCGTCAGCCTCCCATTCAAGAATGGGAAGCCAATTGGAGATAGGGCAAATTCGATATGGCTGTACATTGTGCCCCGAGGGATGAGGAGCCTGATGAACTATGTCAAGGAAAGGTACAACAGCCCACCAGTGTACATCACTGAAAACGGGATGGATGACAGCAACAACCCGTTCATTTCCATCAAGGACGCCCTCAAGGACAGCAAGAGGATCAAATACCACAATGACTACCTCACCAATCTGGCTGCTTCCATCAAGGAGGACGGGTGCGACGTACGTGGGTACTTCGCGTGGTCTCTGCTGGACAACTGGGAGTGGGCGGCCGGATACTCCTCGAGATTCGGGCTCTACTTCGTGGACTACAAGGATAACCTCAAGAGATACCCCAAGAACTCGGTGCAGTGGTTCAAGGCCCTCCTGAAGACCTGAACTCCAGCTGAGAAGTAGTGCTACAATAGTTTGGGCGCCATTTCCATACATCCGATAGATTTATTGGTCTGCACATATACGAATATACGATACCCTGCATATCTCGGAAATGTTTTGTGGTTTTTGTTTTGTTTGTGATACGATAGAATGTATCACTGAATCGTCTGGTCTGTTAGCACACGAGTGAAAAGGGGTAGTACTGCACTCTGCACCTTGTCAGCTTCAAATTGGAAGTCCGGATTCGGCTAATGCAGAGGGTGGCATTAGCTCCAATCCTATCCATCTATCTCTATTCAACGGCTGTGATTAGTTAAA ]
[+] EMBL AK119546 [ TGCAGTTTGGAGCCCACACACCACGATCTCCCGTACCTTCTCTCTGCGAGATGGGGAGGATAAAGAGTAGTAGTGGGCGATGCAGCACGGCGAGGCTGGAGGCGGTCGCCGTCCTCGTCGTCGTCTTCGGCGTCGCGTCGTCGTCGCTGCGAGGATGCATTGCGCAGCAGAGCGGAGGAGGGCTAACCAGGGGCAGCTTCCCCGAGGGGTTCGTCTTCGGCACCGCCTCCGCCGCGTACCAGTACGAGGGAGCTGTGAAGGAGGACGGGAGAGGGCAGACCATCTGGGACACGTTCGCGCACACCTTTGGAAAGATCACCGACTTCAGCAATGCTGATGTTGCAGTTGATCAGTACCACCGTTTCGAGGAGGATATACAGCTCATGGCAGACATGGGGATGGATGCGTATCGGTTCTCGATAGCATGGTCAAGAATCTACCCAAATGGTGTTGGTCAAGTCAATCAAGCTGGTATCGACCACTACAACAAGCTGATCGATGCACTTCTAGCAAAAGGAATTCAGCCATATGTGACACTCTACCACTGGGACCTCCCCCAGGCCCTTGAAGACAAGTACAAGGGCTGGCTTGACAGGCAGATAGTGGACGATTTCGCGGCGTACGCGGAGACGTGCTTCAGGGAGTTCGGGGACAGGGTGAAGCACTGGATCACGCTCAACGAGCCGCACACGGTGGCCATCCAGGGCTACGACGCAGGGCTCCAGGCCCCCGGCCGCTGCTCCGTGCTGCTCCACCTCTACTGCAAGGCCGGCAACTCCGGCACCGAGCCCTACGTCGTCGCCCACCACTTCATCCTCGCCCACGCCGCCGCCGCCAGCATCTACAGGACAAAATACAAGGCGACGCAGAACGGGCAGCTTGGGATAGCGTTCGACGTGATGTGGTTCGAGCCGATGTCCAACACCACGATCGACATCGAGGCGGCCAAGAGAGCGCAGGAGTTTCAGCTAGGATGGTTTGCTGATCCGTTCTTCTTCGGCGACTACCCGGCGACGATGAGGGCGAGGGTGGGGGAGAGGCTGCCGAGGTTCACGGCGGATGAGGCCGCCGTCGTCAAGGGGGCGCTGGATTTCGTCGGCATAAACCACTACACCACCTACTACACGAGGCACAACAACACCAACATCATCGGGACATTGCTCAACAACACCTTGGCAGACACCGGCACCGTCAGCCTCCCATTCAAGAATGGGAAGCCAATTGGAGATAGGGCAAATTCGATATGGCTGTACATTGTGCCCCGAGGGATGAGGAGCCTGATGAACTATGTCAAGGAAAGGTACAACAGCCCACCAGTGTACATCACTGAAAACGGGATGGATGACAGCAACAACCCGTTCATTTCCATCAAGGACGCCCTCAAGGACAGCAAGAGGATCAAATACCACAATGACTACCTCACCAATCTGGCTGCTTCCATCAAGGAGGACGGGTGCGACGTACGTGGGTACTTCGCGTGGTCTCTGCTGGACAACTGGGAGTGGGCGGCCGGATACTCCTCGAGATTCGGGCTCTACTTCGTGGACTACAAGGATAACCTCAAGAGATACCCCAAGAACTCGGTGCAGTGGTTCAAGGCCCTCCTGAAGACCTGAACTCCAGCTGAGAAGTAGTGCTACAATAGTTTGGGCGCCATTTCCATACATCCGATAGATTTATTGGTCTGCACATATACGAATATACGATACCCTGCATATCTCGGAAATGTTTTGTGGTTTTTGTTTTGTTTGTGATACGATAGAATGTATCACTGAATCGTCTGGTCTGTTAGCACACGAGTGAAAAGGG ]
[+] EMBL CB642881 [ CCTCGCCTTCGTCTTCGGCGTCGCGTCGTCGTCGCTGCGAGGATGCATTGCGCAGCAGAGCGGAGGAGGGCTAACCAGGGGCAGCTTCCCCGAGGGGTTCGTCTTCGGCACCGCCTCCGCCGCGTACCAGTACGAGGGAGCTGTGAAGGAGGACGGGAGAGGGCAGACCATCTGGGACACGTTCGCGCACACCTTTGGAAAGATCACCGACTTCAGCAATGCTGATGTTGCAGTTGATCAGTACCACCGTTTCGAGGAGGATATACAGCTCATGGCAGACATGGGGATGGATGCGTATCGGTTCTCGATAGCATGGTCAAGAATCTACCCAAATGGTGTTGGTCAAGTCAATCAAGCTGGTATCGACCACTACAACAAGCTGATCGATGCACTTCTAGCAAAAGGAATTCAGCCATATGTGACACTCTACCACTGGGACCTCCCCCAGGCCCTTGAAGACAAGTACAAGGGCTGGCTTGACAGGCAGATAGTGGACGATTTCGCGGCGTACGCGGAGACGTGCTTCAGGGAGTTCGGGGACAGGGTGAAGCACTGGATCACGCTCAACGAGCCGCACACGGTGGCCATCCAGGGCTACGACGCAGGGCTCCAGGCCCCCGGCCGCTGCTCCGTGCTGCTCCACCTCTACTGCAAGGCCGGCAACTCCGGCACCGAGCCCTACGTCGTCGCCCACCACTTCATCCTCGCCCACGCCGCCGCCGCCAGCATCTACAGGACAAAATACAAGGCGACGCAGAACGGGCAGCTTGGGATAGCGTTCGACGTG ]
[+] EMBL AU070534 [ ACTACACGAGGCACAACAACACCAACATCATCGGGACATTGCTCAACAACACCTTGGCAGACACCGGCACCGTCAGCCTCCCATTCAAGAATGGGAAGCCAATTGGAGATAGGGCAAATTCGATATGGCTGTACATTGTGCCCCGAGGGATGAGGAGCCTGATGAACTATGTCAAGGAAAGGTACAACAGCCCACCAGTGTACATCACTGAAAACGGGATGGATGACAGCAACAACCCGTTCATTTCCATCAAGGACGCCCTCAAGGACAGCAAGAGGATCAAATACCACAATGACTACCTCACCAATCTGGCTGCTTCCATCAAGGAGGACGGGTGCGACGTACGTGGGTACTTCGCGTGGTCTCTGCT ]
[-] EMBL CB642882 [ CCAACATCATCGGGACATTGCTCAACAACACCTTGGCAGACACCGGCACCGTCAGCCTCCCATTCAAGAATGGGAAGCCAATTGGAGATAGGGCAAATTCGATATGGCTGTACATTGTGCCCCGAGGGATGAGGAGCCTGATGAACTATGTCAAGGAAAGGTACAACAGCCCACCAGTGTACATCACTGAAAACGGGATGGATGACAGCAACAACCCGTTCATTTCCATCAAGGACGCCCTCAAGGACAGCAAGAGGATCAAATACCACAATGACTACCTCACCAATCTGGCTGCTTCCATCAAGGAGGACGGGTGCGACGTACGTGGGTACTTCGCGTGGTCTCTGCTGGACAACTGGGAGTGGGCGGCCGGATACTCCTCGAGATTCGGGCTCTACTTCGTGGACTACAAGGATACCCTCAAGAGATACCCCAAGAACTCGGTGCAGTGGTTCAAGGCCCTCCTGAAGACCTGAACTCCAGCTGAGAAGTAGTGCTACAATAGTTTGGGCGCCATTTCCATCCATCCGATAGATTTATTGGTCTGCACATATACGAATATCCGATACCCTGCATATCTCGGAAATGTTTTGTGGTTTTTGTTTTGTTCGTGATACGATAGAATGTATCCCTGAATCGTCTGGTCTGTTAGCACCCGAGTGAAAAGGGGTAGTACTGCACTCTCCTCCTTGTCAGTTTCAAAaaaaaaaag ]
[-] EMBL CB642724 [ ACCGTCAGCCTCCCATTCAAGAATGGGAAGCCAATTGGAGATAGGGCAAATTCGATATGGCTGTACATTGTGCCCCGAGGGATGAGGAGCCTGATGAACTATGTCAAGGAAAGGTACAACAGCCCACCAGTGTACATCACTGAAAACGGGATGGATGACAGCAACAACCCGTTCATTTCCATCAAGGACGCCCTCAAGGACAGCAAGAGGATCAAATACCACAATGACTACCTCACCAATCTGGCTGCTTCCATCAAGGAGGACGGGTGCGACGTACGTGGGTACTTCGCGTGGTCTCTGCTGGACAACTGGGAGTGGGCGGCCGGATACTCCTCGAGATTCGGGCTCTACTTCGTGGACTACAAGGATAACCTCAAGAGATACCCCAAGAACTCGGTGCAGTGGTTCAAGGCCCTCCTGAAGACCTGAACTCCAGCTGAGAAGTAGTGCTACAATAGTTTGGGCGCCATTTCCATACATCCGATAGATTTATTGGTCTGCACATATACGAATATACGATACCCTGCATATCTCGGAAATGTTTTGTGGTGATTGTTTTGTTTGTGATACGATAGAATGTATCACTGAATCGTTTGGTCTGTTAGCACACGAGTGAAAAGAAGGAGTACTGCACTCTGCCCCTTG ]
[-] EMBL CB673496 [ TGGGAAGCCAATTGGAGATAGGGCAAATTCGATATGGCTGTACATTGTGCCCCGAGGGATGAGGAGCCTGATGAACTATGTCAAGGAAAGGTACAACAGCCCACCAGTGTACATCACTGAAAACGGGATGGATGACAGCAACAACCCGTTCATTTCCATCAAGGACGCCCTCAAGGACAGCAAGAGGATCAAATACCACAATGACTACCTCACCAATCTGGCTGCTTCCATCAAGGAGGACGGGTGCGACGTACGTGGGTACTTCGCGTGGTCTCTGCTGGACAACTGGGAGTGGGCGGCCGGATACTCCTCGAGATTCGGGCTCTACTTCGTGGACTACAAGGATAACCTCAAGAGATACCCCAAGAACTCGGTGCAGTGGTTCAAGGCCCTCCTGAAGACCTGAACTCCAGCTGAGAAGTAGTGCTACAATAGTTTGGGCGCCATTTCCATACATCCGATAGATTTATTGGTCTGCACATATACGAATATACGATACCCTGCATATCTCGGAAATGTTTTGTGGTTTTTGTTTTGTTTGTGATACGATAGAATGTATCACTGAATCGTCTGGTCTGTTAGCACACGAGTGAAAAGGGGTAGTACTGCACTCTGCACCTTGTCAGCTTCAAATTGGAAGTCCGGATTCGGCTAATGCAGAGGGTGGCATTAGCTCCAATCCTATCCATCTATCTCTATTCAACGGCTGTGATTAGTTAAACATCTTTCTTATTTTTGCTGTTCGTATATTTTGACAGGGAGGAGATGGTG]
[+] EMBL AU033183 [ AATAGTTTGGNCGCCATTTCCATACATCCGATAGATTTATTGGTCTGCACATATACGAATATACGATACCNTGCATATCTCGGAAATGTTTTGTGGTTTTTGTTTTGTTTGTGATACGATAGAATGTATCACTGAATCGTCTGGTCTGTTAGCACACGANTGAAAAGGGGTAGTACTGCACTCTGCACCTTGTCAGCTTCAAATTGGAAGTCCGGATTCGGCTAATGCAGAGGNTGGCATTAGCTCCAATCCTATCCATCTATCTCTATTCAACGGCTGTGATTAGTTAAAaaaaa ]
consensusID : consensus_13249#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1823 fasta sequence
[CCCTCTCTCCCTCTCTTTGTAACACAAACCAAGATGGGGAATGGAGGGCGATGCATGGTGGAGGTGGTGATACTTCTTGTGTTGATGGCTATGTCGCAAGGATGCGATGCGCAGAATACTACCGGAGGACTGACGAGAAAGAGCTTCCCTAATGGCTTCGTCTTTGGAACCGCTTCATCGGCTTATCAGTATGAAGGTGCTGTCAAGGAGGACGGAAGGGGGCCAACCATTTGGGACAAATTCGCACATACATTTGGAAAGATCATTGACTTCAGCAATGCTGATGTTGCAGTGGATCAGTACCACCGTTTCGAGGAAGATATTCAGCTTATGGCAGACATGGGGATGGATGCATATAGATTCTCAATTTCATGGTCTAGGATTTTCCCAAATGGCACTGGTGAGGTCAACCAGGCAGGCATTGATCACTACAACAAGCTAATCAACGCATTACTAGCTAAAGGAATTGAACCATATGTAACGCTCTATCACTGGGACCTTCCACAAGCTTTGGAGGACAAGTACACTGGGTGGCTTGACAGGCAGATCATCAATGATTATGCGGTATATGCTGAGACGTGCTTCCAGGCATTTGGGGACAGGGTGAAGCACTGGATCACCTTCAACGAGCCCCACACCGTCGCGGTGCAGGCCTATGACAGCGGGATGCATGCACCGGGCCGCTGCTCGGTGCTCCTGCACCTCTACTGCAAGAAAGGGAATTCAGGCACCGAGCCCTACATAGTTGCTCATAACATGATCCTCTCACATGCCACGGTTTCAGACATATACAGGAAGAAATACAAGGCAAGTCAGAATGGGGAGCTGGGGATATCTTTTGATGTTATATGGTACGAACCAATGTCAAATTCCACAGCTGACATTGAAGCCGCCAAGAGAGCACAGGAATTCCAGCTAGGATGGTTTGCGGATCCCTTCTTCTTCGGAGATTATCCGGCAACGATGAGATCGAGAGTGGGAAGCAGGCTACCGAAGTTCACGGAGAAAGAGGCTGCACTTGTGAACGGATCACTGGACTTCATGGGGATCAATCACTATACCACATTCTACACAAAGGATGACCAATCTACTGTAATAGAAAAATTGCTGAACAACACCTTGGCAGATACTGCAACCATCAGTGTCCCCTTCAGAAATGGACAGCCAATTGGGGATAGGGCCAACTCGATATGGTTGTACATCGTGCCTCGTAGCATGAGGATCTTGATGAACTATGTCAAGGACAGATACAACAAACCAACTGTCTACATAACAGAGAATGGAATGGATGATGGCAACAGCCCCTTCATCTCTCTGAAGAATGCCCTCAAGGACGACAAGAGGACCAAATACCACAATGACTATCTTACAAACTTAGCAGACTCCATAAGGGAGGATGGTTGTGATGTTCGCGGGTATTTTGCATGGTCTCTTCTTGACAACTGGGAGTGGGCCGCTGGATACACCTCGAGATTCGGATTATACTACGTAGACTACAAGAACCGGAAGAGATACCCAAAGAATTCAGTGCAGTGGTTCAAGAATCTCTTGGCATCCTCCTCTTGATCAAATTGAGTCGCCTATATATCAAGATGCCTTGATCATTGCTACCCTACTACTACCTAGTTGTGATTTATACACGCAGGATTGCATACCGAGCAGTGACCATTCATGTATTCATTGATTGTGTAAAGAGATATCATGCATGGACTTGTTGTACATAATTCATAATATTCTTGCACCAAAAACTGAATAAACACAGATTGTAATAATAAAATAGATACATTTTGATGCTACAAGAAAAAGGCGCACATTTGGTCTGA]
[+] EMBL AK071372 [CCCTCTCTCCCTCTCTTTGTAACACAAACCAAGATGGGGAATGGAGGGCGATGCATGGTGGAGGTGGTGATACTTCTTGTGTTGATGGCTATGTCGCAAGGATGCGATGCGCAGAATACTACCGGAGGACTGACGAGAAAGAGCTTCCCTAATGGCTTCGTCTTTGGAACCGCTTCATCGGCTTATCAGTATGAAGGTGCTGTCAAGGAGGACGGAAGGGGGCCAACCATTTGGGACAAATTCGCACATACATTTGGAAAGATCATTGACTTCAGCAATGCTGATGTTGCAGTGGATCAGTACCACCGTTTCGAGGAAGATATTCAGCTTATGGCAGACATGGGGATGGATGCATATAGATTCTCAATTTCATGGTCTAGGATTTTCCCAAATGGCACTGGTGAGGTCAACCAGGCAGGCATTGATCACTACAACAAGCTAATCAACGCATTACTAGCTAAAGGAATTGAACCATATGTAACGCTCTATCACTGGGACCTTCCACAAGCTTTGGAGGACAAGTACACTGGGTGGCTTGACAGGCAGATCATCAATGATTATGCGGTATATGCTGAGACGTGCTTCCAGGCATTTGGGGACAGGGTGAAGCACTGGATCACCTTCAACGAGCCCCACACCGTCGCGGTGCAGGCCTATGACAGCGGGATGCATGCACCGGGCCGCTGCTCGGTGCTCCTGCACCTCTACTGCAAGAAAGGGAATTCAGGCACCGAGCCCTACATAGTTGCTCATAACATGATCCTCTCACATGCCACGGTTTCAGACATATACAGGAAGAAATACAAGGCAAGTCAGAATGGGGAGCTGGGGATATCTTTTGATGTTATATGGTACGAACCAATGTCAAATTCCACAGCTGACATTGAAGCCGCCAAGAGAGCACAGGAATTCCAGCTAGGATGGTTTGCGGATCCCTTCTTCTTCGGAGATTATCCGGCAACGATGAGATCGAGAGTGGGAAGCAGGCTACCGAAGTTCACGGAGAAAGAGGCTGCACTTGTGAACGGATCACTGGACTTCATGGGGATCAATCACTATACCACATTCTACACAAAGGATGACCAATCTACTGTAATAGAAAAATTGCTGAACAACACCTTGGCAGATACTGCAACCATCAGTGTCCCCTTCAGAAATGGACAGCCAATTGGGGATAGGGCCAACTCGATATGGTTGTACATCGTGCCTCGTAGCATGAGGATCTTGATGAACTATGTCAAGGACAGATACAACAAACCAACTGTCTACATAACAGAGAATGGAATGGATGATGGCAACAGCCCCTTCATCTCTCTGAAGAATGCCCTCAAGGACGACAAGAGGACCAAATACCACAATGACTATCTTACAAACTTAGCAGACTCCATAAGGGAGGATGGTTGTGATGTTCGCGGGTATTTTGCATGGTCTCTTCTTGACAACTGGGAGTGGGCCGCTGGATACACCTCGAGATTCGGATTATACTACGTAGACTACAAGAACCGGAAGAGATACCCAAAGAATTCAGTGCAGTGGTTCAAGAATCTCTTGGCATCCTCCTCTTGATCAAATTGAGTCGCCTATATATCAAGATGCCTTGATCATTGCTACCCTACTACTACCTAGTTGTGATTTATACACGCAGGATTGCATACCGAGCAGTGACCATTCATGTATTCATTGATTGTGTAAAGAGATATCATGCATGGACTTGTTGTACATAATTCATAATATTCTTGCACCAAAAACTGAATAAACACAGATTGTAATAATAAAATAGATACATTTTGATGCTACAAGAAAAAGGCGCACATTTGGTCTGA]
consensusID : consensus_13249#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 767 fasta sequence
[TATTTCGCCCTACCAGGGAGCTGTGAAGGAGGACGGGAGAGGGCAGACCATCTGGGACACGTTCGCGCACACCTTTGGAAAGATCACCGACTTCAGCAATGCTGATGTTGCAGTTGATCAGTACCACCGTTTCGAGGAGGATATACAGCTCATGGCAGACATGGGGATGGATGCGTATCGGTTCTCGATAGCATGGTCAAGAATCTACCCAAATGGTGTTGGTCAAGTCAATCAAGCTGGTATCGACCACTACAACAAGCTGATCGATGCACTTCTAGCAAAAGGAATTCAGCCATATGTGACACTCTACCACTGGGACCTCCCCCAGGCCCTTGAAGACAAGTACAAGGGCTGGCTTGACAGGCAGATAGTGGACGATTTCGCGGCGTACGCGGAGACGTGCTTCAGGGAGTTCGGGGACAGGGTGAAGCACTGGATCACGCTCAACGAGCCGCACACGGTGGCCATCCAGGGCTACGACGCAGGGCTCCAGGCCCCCGGCCGCTGCTCCGTGCTGCTCCACCTCTACTGCAAGGCCGGCAACTCCGGCACCGAGCCCTACGTCGTCGCCCACCACTTCATCCTCGCCCACGCCGCCGCCGCCAGCATCTACAGGACAAAATACAAGGCGACGCAGAACGGGCAGCTTGGGATAGCGTTCGACGTGATGTGGTTCGAGCCGATGTCCAACACCACGATCGACATCGAGGCGGCCAAGAGAGCGCAGGAGTTTCAGCTAGGATGGTTTGCTGATCCGTTCTTCTTCG]
[+] EMBL CB673495 [TATTTCGCCCTACCAGGGAGCTGTGAAGGAGGACGGGAGAGGGCAGACCATCTGGGACACGTTCGCGCACACCTTTGGAAAGATCACCGACTTCAGCAATGCTGATGTTGCAGTTGATCAGTACCACCGTTTCGAGGAGGATATACAGCTCATGGCAGACATGGGGATGGATGCGTATCGGTTCTCGATAGCATGGTCAAGAATCTACCCAAATGGTGTTGGTCAAGTCAATCAAGCTGGTATCGACCACTACAACAAGCTGATCGATGCACTTCTAGCAAAAGGAATTCAGCCATATGTGACACTCTACCACTGGGACCTCCCCCAGGCCCTTGAAGACAAGTACAAGGGCTGGCTTGACAGGCAGATAGTGGACGATTTCGCGGCGTACGCGGAGACGTGCTTCAGGGAGTTCGGGGACAGGGTGAAGCACTGGATCACGCTCAACGAGCCGCACACGGTGGCCATCCAGGGCTACGACGCAGGGCTCCAGGCCCCCGGCCGCTGCTCCGTGCTGCTCCACCTCTACTGCAAGGCCGGCAACTCCGGCACCGAGCCCTACGTCGTCGCCCACCACTTCATCCTCGCCCACGCCGCCGCCGCCAGCATCTACAGGACAAAATACAAGGCGACGCAGAACGGGCAGCTTGGGATAGCGTTCGACGTGATGTGGTTCGAGCCGATGTCCAACACCACGATCGACATCGAGGCGGCCAAGAGAGCGCAGGAGTTTCAGCTAGGATGGTTTGCTGATCCGTTCTTCTTCG]
[+] EMBL OSS4668A [ CCGACTTCAGCAATGCTGATGTTGCAGTTGATCAGTACCACCGTTTCGAGGAGGATATACAGCTCATGGCAGACATGGGGATGGATGCGTATCGGTTCTCGATAGCATGGTCAAGAATCTACCCAAATGGTGTTGGTCAAGTCAATCAAGCTGGTATCGACCACTACAACAAGCTGATCGATGCACTTCTAGCAAAAGGAATTCAGCCATATGTGACACTCTACCACTGGGACCTCCCCCAGGCCCTTGAAGACAAGTACAAGGGCTGGCTTGACAGGCAGATAGTGGACGATTTCGCGGCGTACGCGGAGACGTGCTTCAGGGAGTTCGGGGACAGGGTGnng ]
consensusID : consensus_13249#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 87 fasta sequence
[AATCCTATCCATCTGGCTCTATTCAACGGCTGTGATTAGTTAAACATCTTTCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF312542 [AATCCTATCCATCTGGCTCTATTCAACGGCTGTGATTAGTTAAACATCTTTCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13249#1 ------------------------------------------------------------
consensus_13249#2 ------------------------------------------------------------
consensus_13249#0 ATTGGTTATTAGTGGGAGCGTGCATGCCTCCATTTCTGCCGCTATAAATACTCATCTCAT 60
consensus_13249#3 ------------------------------------------------------------
consensus_13249#1 ---------------------------------------------------CCCTCTCTC 9
consensus_13249#2 ------------------------------------------------------------
consensus_13249#0 CTCATCATCCACCATCAGTCCGTGCAGTTTGGAGCCCACACACCACGATCTCCCGTACCT 120
consensus_13249#3 ------------------------------------------------------------
consensus_13249#1 CCTCTCTTTGTAACACAAACCAAGATGGGGAATGGAGGGCGATGCAT---------GGTG 60
consensus_13249#2 ------------------------------------------------------------
consensus_13249#0 TCTCTCTGCGAGATGGGGAGGATAAAGAGTAGTAGTGGGCGATGCAGCACGGCGAGGCTG 180
consensus_13249#3 ------------------------------------------------------------
consensus_13249#1 GAGGTGGTGATACTTCTTGTGTTGAT---------------GGCTATGTCGCAAGGATGC 105
consensus_13249#2 ------------------------------------------------------------
consensus_13249#0 GAGGCGGTCGCCGTCCTCGTCGTCGTCTTCGGCGTCGCGTCGTCGTCGCTGCGAGGATGC 240
consensus_13249#3 ------------------------------------------------------------
consensus_13249#1 GATGCGCAGAATACTACCGGAGGACTGACGAGAAAGAGCTTCCCTAATGGCTTCGTCTTT 165
consensus_13249#2 ------------------------------------------------------------
consensus_13249#0 ATTGCGCAGCAGAGCGGAGGAGGGCTAACCAGGGGCAGCTTCCCCGAGGGGTTCGTCTTC 300
consensus_13249#3 ------------------------------------------------------------
consensus_13249#1 GGAACCGCTTCATCGGCTTATCAGTATGAAGGTGCTGTCAAGGAGGACGGAAGGGGGCCA 225
consensus_13249#2 --------------TATTTCGCCCTACCAGGGAGCTGTGAAGGAGGACGGGAGAGGGCAG 46
consensus_13249#0 GGCACCGCCTCCGCCGCGTACCAGTACGAGGGAGCTGTGAAGGAGGACGGGAGAGGGCAG 360
consensus_13249#3 ------------------------------------------------------------
consensus_13249#1 ACCATTTGGGACAAATTCGCACATACATTTGGAAAGATCATTGACTTCAGCAATGCTGAT 285
consensus_13249#2 ACCATCTGGGACACGTTCGCGCACACCTTTGGAAAGATCACCGACTTCAGCAATGCTGAT 106
consensus_13249#0 ACCATCTGGGACACGTTCGCGCACACCTTTGGAAAGATCACCGACTTCAGCAATGCTGAT 420
consensus_13249#3 ------------------------------------------------------------
consensus_13249#1 GTTGCAGTGGATCAGTACCACCGTTTCGAGGAAGATATTCAGCTTATGGCAGACATGGGG 345
consensus_13249#2 GTTGCAGTTGATCAGTACCACCGTTTCGAGGAGGATATACAGCTCATGGCAGACATGGGG 166
consensus_13249#0 GTTGCAGTTGATCAGTACCACCGTTTCGAGGAGGATATACAGCTCATGGCAGACATGGGG 480
consensus_13249#3 ------------------------------------------------------------
consensus_13249#1 ATGGATGCATATAGATTCTCAATTTCATGGTCTAGGATTTTCCCAAATGGCACTGGTGAG 405
consensus_13249#2 ATGGATGCGTATCGGTTCTCGATAGCATGGTCAAGAATCTACCCAAATGGTGTTGGTCAA 226
consensus_13249#0 ATGGATGCGTATCGGTTCTCGATAGCATGGTCAAGAATCTACCCAAATGGTGTTGGTCAA 540
consensus_13249#3 ------------------------------------------------------AATCCT 6
*
consensus_13249#1 GTCAACCAGGCAGGCATTGATCACTACAACAAGCTAATCAACGCATTACTAGCTAAAGGA 465
consensus_13249#2 GTCAATCAAGCTGGTATCGACCACTACAACAAGCTGATCGATGCACTTCTAGCAAAAGGA 286
consensus_13249#0 GTCAATCAAGCTGGTATCGACCACTACAACAAGCTGATCGATGCACTTCTAGCAAAAGGA 600
consensus_13249#3 ATCCATCTGGCTCTATTCAACGGCTGTGATTAGTTAAACATCTTTCTTAAAAAAAAAAAA 66
** * * ** * * ** * ** * * * * * *** *
consensus_13249#1 ATTGAACCATATGTAACGCTCTATCACTGGGACCTTCCACAAGCTTTGGAGGACAAGTAC 525
consensus_13249#2 ATTCAGCCATATGTGACACTCTACCACTGGGACCTCCCCCAGGCCCTTGAAGACAAGTAC 346
consensus_13249#0 ATTCAGCCATATGTGACACTCTACCACTGGGACCTCCCCCAGGCCCTTGAAGACAAGTAC 660
consensus_13249#3 AAAAAAAAAAAAAAAAAAAAA--------------------------------------- 87
* * * * *
consensus_13249#1 ACTGGGTGGCTTGACAGGCAGATCATCAATGATTATGCGGTATATGCTGAGACGTGCTTC 585
consensus_13249#2 AAGGGCTGGCTTGACAGGCAGATAGTGGACGATTTCGCGGCGTACGCGGAGACGTGCTTC 406
consensus_13249#0 AAGGGCTGGCTTGACAGGCAGATAGTGGACGATTTCGCGGCGTACGCGGAGACGTGCTTC 720
consensus_13249#3 ------------------------------------------------------------
consensus_13249#1 CAGGCATTTGGGGACAGGGTGAAGCACTGGATCACCTTCAACGAGCCCCACACCGTCGCG 645
consensus_13249#2 AGGGAGTTCGGGGACAGGGTGAAGCACTGGATCACGCTCAACGAGCCGCACACGGTGGCC 466
consensus_13249#0 AGGGAGTTCGGGGACAGGGTGAAGCACTGGATCACGCTCAACGAGCCGCACACGGTGGCC 780
consensus_13249#3 ------------------------------------------------------------
consensus_13249#1 GTGCAGGCCTATGACAGCGGGATGCATGCACCGGGCCGCTGCTCGGTGCTCCTGCACCTC 705
consensus_13249#2 ATCCAGGGCTACGACGCAGGGCTCCAGGCCCCCGGCCGCTGCTCCGTGCTGCTCCACCTC 526
consensus_13249#0 ATCCAGGGCTACGACGCAGGGCTCCAGGCCCCCGGCCGCTGCTCCGTGCTGCTCCACCTC 840
consensus_13249#3 ------------------------------------------------------------
consensus_13249#1 TACTGCAAGAAAGGGAATTCAGGCACCGAGCCCTACATAGTTGCTCATAACATGATCCTC 765
consensus_13249#2 TACTGCAAGGCCGGCAACTCCGGCACCGAGCCCTACGTCGTCGCCCACCACTTCATCCTC 586
consensus_13249#0 TACTGCAAGGCCGGCAACTCCGGCACCGAGCCCTACGTCGTCGCCCACCACTTCATCCTC 900
consensus_13249#3 ------------------------------------------------------------
consensus_13249#1 TCACATGCCACGGTTTCAGACATATACAGGAAGAAATACAAGGCAAGTCAGAATGGGGAG 825
consensus_13249#2 GCCCACGCCGCCGCCGCCAGCATCTACAGGACAAAATACAAGGCGACGCAGAACGGGCAG 646
consensus_13249#0 GCCCACGCCGCCGCCGCCAGCATCTACAGGACAAAATACAAGGCGACGCAGAACGGGCAG 960
consensus_13249#3 ------------------------------------------------------------
consensus_13249#1 CTGGGGATATCTTTTGATGTTATATGGTACGAACCAATGTCAAATTCCACAGCTGACATT 885
consensus_13249#2 CTTGGGATAGCGTTCGACGTGATGTGGTTCGAGCCGATGTCCAACACCACGATCGACATC 706
consensus_13249#0 CTTGGGATAGCGTTCGACGTGATGTGGTTCGAGCCGATGTCCAACACCACGATCGACATC 1020
consensus_13249#3 ------------------------------------------------------------
consensus_13249#1 GAAGCCGCCAAGAGAGCACAGGAATTCCAGCTAGGATGGTTTGCGGATCCCTTCTTCTTC 945
consensus_13249#2 GAGGCGGCCAAGAGAGCGCAGGAGTTTCAGCTAGGATGGTTTGCTGATCCGTTCTTCTTC 766
consensus_13249#0 GAGGCGGCCAAGAGAGCGCAGGAGTTTCAGCTAGGATGGTTTGCTGATCCGTTCTTCTTC 1080
consensus_13249#3 ------------------------------------------------------------
consensus_13249#1 GGAGATTATCCGGCAACGATGAGATCGAGAGTGGGAAGCAGGCTACCGAAGTTCACGGAG 1005
consensus_13249#2 G----------------------------------------------------------- 767
consensus_13249#0 GGCGACTACCCGGCGACGATGAGGGCGAGGGTGGGGGAGAGGCTGCCGAGGTTCACGGCG 1140
consensus_13249#3 ------------------------------------------------------------
consensus_13249#1 AAAGAGGCTGCACTTGTGAACGGATCACTGGACTTCATGGGGATCAATCACTATACCACA 1065
consensus_13249#2 ------------------------------------------------------------
consensus_13249#0 GATGAGGCCGCCGTCGTCAAGGGGGCGCTGGATTTCGTCGGCATAAACCACTACACCACC 1200
consensus_13249#3 ------------------------------------------------------------
consensus_13249#1 TTCTACACAAAGGATGACCAATCTACTGTAATAGAAAAATTGCTGAACAACACCTTGGCA 1125
consensus_13249#2 ------------------------------------------------------------
consensus_13249#0 TACTACACGAGGCACAACAACACCAACATCATCGGGACATTGCTCAACAACACCTTGGCA 1260
consensus_13249#3 ------------------------------------------------------------
consensus_13249#1 GATACTGCAACCATCAGTGTCCCCTTCAGAAATGGACAGCCAATTGGGGATAGGGCCAAC 1185
consensus_13249#2 ------------------------------------------------------------
consensus_13249#0 GACACCGGCACCGTCAGCCTCCCATTCAAGAATGGGAAGCCAATTGGAGATAGGGCAAAT 1320
consensus_13249#3 ------------------------------------------------------------
consensus_13249#1 TCGATATGGTTGTACATCGTGCCTCGTAGCATGAGGATCTTGATGAACTATGTCAAGGAC 1245
consensus_13249#2 ------------------------------------------------------------
consensus_13249#0 TCGATATGGCTGTACATTGTGCCCCGAGGGATGAGGAGCCTGATGAACTATGTCAAGGAA 1380
consensus_13249#3 ------------------------------------------------------------
consensus_13249#1 AGATACAACAAACCAACTGTCTACATAACAGAGAATGGAATGGATGATGGCAACAGCCCC 1305
consensus_13249#2 ------------------------------------------------------------
consensus_13249#0 AGGTACAACAGCCCACCAGTGTACATCACTGAAAACGGGATGGATGACAGCAACAACCCG 1440
consensus_13249#3 ------------------------------------------------------------
consensus_13249#1 TTCATCTCTCTGAAGAATGCCCTCAAGGACGACAAGAGGACCAAATACCACAATGACTAT 1365
consensus_13249#2 ------------------------------------------------------------
consensus_13249#0 TTCATTTCCATCAAGGACGCCCTCAAGGACAGCAAGAGGATCAAATACCACAATGACTAC 1500
consensus_13249#3 ------------------------------------------------------------
consensus_13249#1 CTTACAAACTTAGCAGACTCCATAAGGGAGGATGGTTGTGATGTTCGCGGGTATTTTGCA 1425
consensus_13249#2 ------------------------------------------------------------
consensus_13249#0 CTCACCAATCTGGCTGCTTCCATCAAGGAGGACGGGTGCGACGTACGTGGGTACTTCGCG 1560
consensus_13249#3 ------------------------------------------------------------
consensus_13249#1 TGGTCTCTTCTTGACAACTGGGAGTGGGCCGCTGGATACACCTCGAGATTCGGATTATAC 1485
consensus_13249#2 ------------------------------------------------------------
consensus_13249#0 TGGTCTCTGCTGGACAACTGGGAGTGGGCGGCCGGATACTCCTCGAGATTCGGGCTCTAC 1620
consensus_13249#3 ------------------------------------------------------------
consensus_13249#1 TACGTAGACTACAAG---AACCGGAAGAGATACCCAAAGAATTCAGTGCAGTGGTTCAAG 1542
consensus_13249#2 ------------------------------------------------------------
consensus_13249#0 TTCGTGGACTACAAGGATAACCTCAAGAGATACCCCAAGAACTCGGTGCAGTGGTTCAAG 1680
consensus_13249#3 ------------------------------------------------------------
consensus_13249#1 AATCTCTTGGCATCCTC--CTCTTGATCAAATTGAGTCGCCTATATATCAAGATGCCTTG 1600
consensus_13249#2 ------------------------------------------------------------
consensus_13249#0 GCCCTCCTGAAGACCTGAACTCCAGCTGAGAAGTAGTGCTACAATAGTTTGGGCGCCATT 1740
consensus_13249#3 ------------------------------------------------------------
consensus_13249#1 ATCATTGCTACCCTACTACTACCTAGTTGTG-ATTTATACACGCAGGATTGCATACCGAG 1659
consensus_13249#2 ------------------------------------------------------------
consensus_13249#0 TCCATACATCCGATAGATTTATTGGTCTGCACATATACGAATATACGATACCCTGCATAT 1800
consensus_13249#3 ------------------------------------------------------------
consensus_13249#1 CAGTGACCATTCATGTATTCATTGATTG---TGTAAAGAGATATCATGCATGGACTTGTT 1716
consensus_13249#2 ------------------------------------------------------------
consensus_13249#0 CTCGGAAATGTTTTGTGGTTTTTGTTTTGTTTGTGATACGATAGAATGTATCACTGAATC 1860
consensus_13249#3 ------------------------------------------------------------
consensus_13249#1 GTACATAAT-TCATAATATTCTTGCACCAAAAACTGAATAAAC---ACAGATTGTAATAA 1772
consensus_13249#2 ------------------------------------------------------------
consensus_13249#0 GTCTGGTCTGTTAGCACACGAGTGAAAAGGGGTAGTACTGCACTCTGCACCTTGTCAGCT 1920
consensus_13249#3 ------------------------------------------------------------
consensus_13249#1 TAAAATAGATACATTTTGATGCTACAAGAAAAAGGCGCACATTTGGTCTGA--------- 1823
consensus_13249#2 ------------------------------------------------------------
consensus_13249#0 TCAAATTGGAAGTCCGGATTCGGCTAATGCAGAGGGTGGCATTAGCTCCAATCCTATCCA 1980
consensus_13249#3 ------------------------------------------------------------
consensus_13249#1 ------------------------------------------------------------
consensus_13249#2 ------------------------------------------------------------
consensus_13249#0 TCTATCTCTATTCAACGGCTGTGATTAGTTAAACATCTTTCTTATTTTTGCTGTTCGTAT 2040
consensus_13249#3 ------------------------------------------------------------
consensus_13249#1 -----------------------
consensus_13249#2 -----------------------
consensus_13249#0 ATTTTGACAGGGAGGAGATGGTG 2063
consensus_13249#3 -----------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||