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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13291#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 2197 fasta sequence
[CTAACCCTAGCTAAACCCCCCTTCTCCCTTGCGCCTCCGCTTCGCGAGCCTCATCTCCTCGATCTCTTTCGATTCAGTGGAAAACCTAGGAGACCGGCGCGGCATGGCGGAGTCGGGCTCGTCGGGCCTGGAGGAGAAGCTGGCGGGTCTCTCCGCGGGCTGCGGCGAGGAGCCGCAGCAGCTCTCGAAGAATGCCAAGAAGAGGGAGGAGAAAAGGAAGAAGCAGGAGGAGGAGCGCCGGTTGAAGGAGGAAGAGAAGAAGAAGAAGGCCGCTGCAACAGCAGCTGCTAGTGGAGAGCCCCCGAAGGAATCTGCCGCCGACGATGAGGAAATGGATCCCACTCAATATTATGAGAATCGCCTCAAGGCACTTGATTCACTCAAGGCCACGGGTGTAAACCCCTATCCCCATAAGTTCCTGGCTAATATTACCGTAGCCGATTATATTGAGAAATACAAGAGCATGAATGTTGGGGATAAGCTTGTTGACGTCACCGAGTGCCTAGCAGGGAGGATCATGACCAAGAGAGCGCAATCTTCCAAGCTCTTATTTTATGATCTTTATGGTGGTGGTGAGAAAGTTCAAGTTTTTGCTGATGCCAGGACCTCAGAGTTGGAAGATAATGAATTCATTAAGTTTCACTCTACTCTGAAACGAGGTGATATTGTTGGTGTATGTGGTTATCCAGGAAAGAGCAAGAGAGGGGAGCTCAGTATATTCCCAAAGAAAATTGTTGTGCTCTCCCCATGCCTTCATATGATGCCTCGACAGAAGAGTGAGGGAAGTGCTGTTCCCACTCCATGGGCTCCAGGAATGGGTAGGAACATCGAAAAGTATGTTTTGAGGGACCAGGAAACCCGATATCGTCAACGATATCTTGATCTCATGGTAAACCATGAAGTGAGGCATATTTTCAAGACAAGATCAAAAGTTGTCTCTTTTATTCGGAAATTTCTTGATGGTCTTGACTTTTTAGAGGTGGAGACTCCAATGATGAACATGATTGCAGGTGGAGCAGCTGCAAGGCCTTTTGTCACACATCATAATGAGTTAAACATGAGGCTTTATATGCGTATTGCTCCTGAGCTCTATCTGAAGGAATTGGTTGTTGGGGGGCTGGATCGTGTTTATGAAATTGGGAAGCAGTTCAGGAATGAAGGAATTGACCTGACGCACAATCCTGAATTCACAACATGTGAATTTTATATGGCATATGCAGATTACAATGACTTGATAGAGCTTACTGAAACCATGTTATCTGGTATGGTTAAGGAGTTGACAGGTGGCTACAAGATTAAATATCATGCTAACGGAGTTGAGAAACCACCAATAGAGATTGATTCCACACCTCCCTTCAGAAAGATAGACGTGATTGAAGAATTAGAGGCTATGGCTAAACTCAATATACCTAAAGATCTCTCAAGTGATGAAGCAAACAAGTATTTGATAGATGCCTGTGCCAAATATGATGTCAAATGCCCACCTCCCCAGACTACAACACGGTTGCTTGATAAGCTAGTTGGCCATTTCTTGGAGGAGACATGTGTGAATCCCACGTTTATTATCAACCATCCAGAGATAATGAGTCCATTGGCAAAGTGGCATAGGTCTCGACCTGGATTGACTGAGAGGTTTGAGCTCTTTGTTAACAAGCATGAGGTGTGCAATGCATATACAGAGTTAAATGATCCTGTTGTTCAGAGGCAACGGTTTGAGGAACAACTAAAGGATCGTCAATCTGGTGATGATGAAGCTATGGCATTGGATGAAACATTCTGCACAGCCCTTGAGTATGGCCTACCACCGACTGGTGGTTGGGGATTGGGAATTGATCGCCTTACAATGTTGCTGACTGATTCTCAGAATATCAAGGAAGTTCTTCTATTCCCGGCTATGAAGCCTCAAGATTAGATATGTCCACAAAGCAGGAACCTGTCAGAAGGATTAAAGCAGACTGAATGCTGACTGAGAGGATTTCAATTGGCCCTCGAGATGGAGGATTTGAAGGAAACTTATAATTTTGTTTTAATTGTGCATGTGAGGTTTCCATGTCCTATTGTACTTTATTTTTGGAGAACATTGGTGGTCAGTTAAGCAAACAGTTAATCTCGCTGCAAAGATATCAAGCGTAACTTATAAGATGACTTAAGTTTGTGCAATTTCTGTGGCCTTACTTGAAAATGATAGCGCGTTATT]
[+] EMBL AK099302 [CTAACCCTAGCTAAACCCCCCTTCTCCCTTGCGCCTCCGCTTCGCGAGCCTCATCTCCTCGATCTCTTTCGATTCAGTGGAAAACCTAGGAGACCGGCGCGGCATGGCGGAGTCGGGCTCGTCGGGCCTGGAGGAGAAGCTGGCGGGTCTCTCCGCGGGCTGCGGCGAGGAGCCGCAGCAGCTCTCGAAGAATGCCAAGAAGAGGGAGGAGAAAAGGAAGAAGCAGGAGGAGGAGCGCCGGTTGAAGGAGGAAGAGAAGAAGAAGAAGGCCGCTGCAACAGCAGCTGCTAGTGGAGAGCCCCCGAAGGAATCTGCCGCCGACGATGAGGAAATGGATCCCACTCAATATTATGAGAATCGCCTCAAGGCACTTGATTCACTCAAGGCCACGGGTGTAAACCCCTATCCCCATAAGTTCCTGGCTAATATTACCGTAGCCGATTATATTGAGAAATACAAGAGCATGAATGTTGGGGATAAGCTTGTTGACGTCACCGAGTGCCTAGCAGGGAGGATCATGACCAAGAGAGCGCAATCTTCCAAGCTCTTATTTTATGATCTTTATGGTGGTGGTGAGAAAGTTCAAGTTTTTGCTGATGCCAGGACCTCAGAGTTGGAAGATAATGAATTCATTAAGTTTCACTCTACTCTGAAACGAGGTGATATTGTTGGTGTATGTGGTTATCCAGGAAAGAGCAAGAGAGGGGAGCTCAGTATATTCCCAAAGAAAATTGTTGTGCTCTCCCCATGCCTTCATATGATGCCTCGACAGAAGAGTGAGGGAAGTGCTGTTCCCACTCCATGGGCTCCAGGAATGGGTAGGAACATCGAAAAGTATGTTTTGAGGGACCAGGAAACCCGATATCGTCAACGATATCTTGATCTCATGGTAAACCATGAAGTGAGGCATATTTTCAAGACAAGATCAAAAGTTGTCTCTTTTATTCGGAAATTTCTTGATGGTCTTGACTTTTTAGAGGTGGAGACTCCAATGATGAACATGATTGCAGGTGGAGCAGCTGCAAGGCCTTTTGTCACACATCATAATGAGTTAAACATGAGGCTTTATATGCGTATTGCTCCTGAGCTCTATCTGAAGGAATTGGTTGTTGGGGGGCTGGATCGTGTTTATGAAATTGGGAAGCAGTTCAGGAATGAAGGAATTGACCTGACGCACAATCCTGAATTCACAACATGTGAATTTTATATGGCATATGCAGATTACAATGACTTGATAGAGCTTACTGAAACCATGTTATCTGGTATGGTTAAGGAGTTGACAGGTGGCTACAAGATTAAATATCATGCTAACGGAGTTGAGAAACCACCAATAGAGATTGATTCCACACCTCCCTTCAGAAAGATAGACGTGATTGAAGAATTAGAGGCTATGGCTAAACTCAATATACCTAAAGATCTCT AAGTGATGAAGCAAACAAGTATTTGATAGATGCCTGTGCCAAATATGATGTCAAATGCCCACCTCCCCAGACTACAACACGGTTGCTTGATAAGCTAGTTGGCCATTTCTTGGAGGAGACATGTGTGAATCCCACGTTTATTATCAACCATCCAGAGATAATGAGTCCATTGGCAAAGTGGCATAGGTCTCGACCTGGATTGACTGAGAGGTTTGAGCTCTTTGTTAACAAGCATGAGGTGTGCAATGCATATACAGAGTTAAATGATCCTGTTGTTCAGAGGCAACGGTTTGAGGAACAACTAAAGGATCGTCAATCTGGTGATGATGAAGCTATGGCATTGGATGAAACATTCTGCACAGCCCTTGAGTATGGCCTACCACCGACTGGTGGTTGGGGATTGGGAATTGATCGCCTTACAATGTTGCTGACTGATTCTCAGAATATCAAGGAAGTTCTTCTATTCCCGGCTATGAAGCCTCAAGATTAGATATGTCCACAAAGCAGGAACCTGTCAGAAGGATTAAAGCAGACTGAATGCTGACTGAGAGGATTTCAATTGGCCCTCGAGATGGAGGATTTGAAGGAAACTTATAATTTTGTTTTAATTGTGCATGTGAGGTTTCCATGTCCTATTGTACTTTATTTTTGGAGAACATTGGTGGTCAGTTAAGCAAACAGTTAATCTCGCTGCAAAGATATCAAGCGTAACTTATAAGATGAC ]
[+] EMBL AK063765 [ TAACCCTAGCTAAACCCCCCTTCTCCCTTGCGCCTCCGCTTCGCGAGCCTCATCTCCTCGATCTCTTTCGATTCAGTGGAAAACCTAGGAGACCGGCGCGGCATGGCGGAGTCGGGCTCGTCGGGCCTGGAGGAGAAGCTGGCGGGTCTCTCCGCGGGCTGCGGCGAGGAGCCGCAGCAGCTCTCGAAGAATGCCAAGAAGAGGGAGGAGAAAAGGAAGAAGCAGGAGGAGGAGCGCCGGTTGAAGGAGGAAGAGAAGAAGAAGAAGGCCGCTGCAACAGCAGCTGCTAGTGGAGAGCCCCCGAAGGAATCTGCCGCCGACGATGAGGAAATGGATCCCACTCAATATTATGAGAATCGCCTCAAGGCACTTGATTCACTCAAGGCCACGGGTGTAAACCCCTATCCCCATAAGTTCCTGGCTAATATTACCGTAGCCGATTATATTGAGAAATACAAGAGCATGAATGTTGGGGATAAGCTTGTTGACGTCACCGAGTGCCTAGCAGGGAGGATCATGACCAAGAGAGCGCAATCTTCCAAGCTCTTATTTTATGATCTTTATGGTGGTGGTGAGAAAGTTCAAGTTTTTGCTGATGCCAGGACCTCAGAGTTGGAAGATAATGAATTCATTAAGTTTCACTCTACTCTGAAACGAGGTGATATTGTTGGTGTATGTGGTTATCCAGGAAAGAGCAAGAGAGGGGAGCTCAGTATATTCCCAAAGAAAATTGTTGTGCTCTCCCCATGCCTTCATATGATGCCTCGACAGAAGAGTGAGGGAAGTGCTGTTCCCACTCCATGGGCTCCAGGAATGGGTAGGAACATCGAAAAGTATGTTTTGAGGGACCAGGAAACCCGATATCGTCAACGATATCTTGATCTCATGGTAAACCATGAAGTGAGGCATATTTTCAAGACAAGATCAAAAGTTGTCTCTTTTATTCGGAAATTTCTTGATGGTCTTGACTTTTTAGAGGTGGAGACTCCAATGATGAACACGATTGCAGGTGGAGCAGCTGCAAGGCCTTTTGTCACACATCATAATGAGTTAAACATGAGGCTTTATATGCGTATTGCTCCTGAGCTCTATCTGAAGGAATTGGTTGTTGGGGGGCTGGATCGTGTTTATGAAATTGGGAAGCAGTTCAGGAATGAAGGAATTGACCTGACGCACAATCCTGAATTCACAACATGTGAATTTTATATGGCATATGCAGATTACAATGACTTGATAGAGCTTACTGAAACCATGTTATCTGGTATGGTTAAGGAGTTGACAGGTGGCTACAAGATTAAATATCATGCTAACGGAGTTGAGAAACCACCAATAGAGATTGATTTCACACCTCCCTTCAGAAAGATAGACATGATTGAAGAATTAGAGGCTATGGCTAAACTCAATATACCTAAAGATCTCTCAAGTGATGAAGCAAACAAGTATTTGATAGATGCCTGTGCCAAATATGATGTCAGATGCCCACCTCCCCAGACTACAACACGGTTGCTTGATAAGCTAGTTGGCCATTTCTTGGAGGAGACATGTGTGAATCCCACGTTTATTATCAACCATCCAGAGATAATGAGTCCATTGGCAAAGTGGCATAGGTCTCGACCTGGATTGACTGAGAGGTTTGAGCTCTTTGTTAACAAGCATGAGGTGTGCAATGCATATACAGAGTTAAATGATCCTGTTGTTCAGAGGCAACGGTTTGAGGAACAACTAAAGGATCGTCAATCTGGTGATGATGAAGCTATGGCATTGGATGAAACATTCTGCACAGCCCTTGAGTATGGCCTACCACCGACTGGTGGTTGGGGATTGGGAATTGATCGCCTTACAATGTTGCTGACTGATTCTCAGAATATCAAGGAAGTTCTTCTATTCCCGGCTATGAAGCCTCAAGATTAGATATGTCCACAAAGCAGGAACCTGTCAGAAGGATTAAAGCAGACTGAATGCTGACTGAGAGGATTTCAATTGGCCCTCGAGATGGAGGATTTGAAGGAAACTTATAATTTTGTTTTAATTGTGCATGTGAGGTTTCCATGTCCTATTGTACTTTATTTTTGGAGAACATTGGTGGTCAGTTAAGCAAACAGTTAATCTCGCTGCAAAGATATCAAGCGTAACTTATAAGATGACTTAAGTTTGTGCAATTTCTGTGGCCTTACTTGAAAATGATAGCGCGTTATT]
[+] EMBL CB644605 [ ATCTCCCTCGATTCAGTGGAAAACCTAGGAGACCGGCGCGGCATGGCGGAGTCGGGCTCGTCGGGCCTGGAGGAGAAGCTGGCGGGTCTCTCCGCGGGCTGCGGCGAGGAGCCGCAGCAGCTCTCGAAGAATGCCAAGAAGAGGGAGGAGAAAAGGAAGAAGCAGGAGGAGGAGCGCCGGTTGAAGGAGGAAGAGAAGAAGAAGAAGGCCGCTGCAACAGCAGCTGCTAGTGGAGAGCCCCCGAAGGAATCTGCCGCCGACGATGAGGAAATGGATCCCACTCAATATTATGAGAATCGCCTCAAGGCACTTGATTCACTCAAGGCCACGGGTGTAAACCCCTATCCCCATAAGTTCCTGGCTAATATTACCGTAGCCGATTATATTGAGAAATACAAGAGCATGAATGTTGGGGATAAGCTTGTTGACGTCACCGAGTGCCTAGCAGGGAGGATCATGACCAAGAGAGCGCAATCTTCCAAGCTCTTATTTTATGATCTTTATGGTGGTGGTGAGAAAGTTCAAGTTTTTGCTGATGCCAGGACCTCAGAGTTGGAAGATAATGAATTCATTAAGTTTCACTCTACTCTGAAACGAGGTGATATTGTTGGTGTATGTGGTTATCCAGGAAAGAGCAAGAGAGGGGAGCTCAGTATATTCCCAAAGAAAATTGTTGTGCTCTCCCCATGCCTTCATATGATGCCTCGACAGAAGAGTGAGGGAAGTGCTGTTCCCACTCCATGGGCTCC ]
[+] EMBL CB627677 [ GAGACCCGTGCGGCATGGCGGAGTCGGGCTCGTCGGGTCTGGAGGAGAAGCTGGCGGGTCTCTCCGCGGGCGGCGGCGAGGAGCCGCAGCAGCTCTCGAAGAATGCCAAGAAGAGGGAGGAGAAAAGGAAGAAGCAGGAGGAGGAGCGCCGGTTGAAGGAGGAAGAGAAGAAGAAGAAGGCCGCTGCAACAGCAGCTGCTAGTGGAGAGCCCCCGAAGGAATCTGCCGCCGACGATGAGGAAATGGATCCCACTCAATATTATGAGAATCGCCTCAAGGCACTTGATTCACTCAAGGCCACGGGTGTAAACCCCTATCCCCATAAGTTCCTGGCTAATATTACCGTAGCCGATTATATTGAGAAATACAAGAGCATGAATGTTGGGGATAAGCTTGTTGACGTCACCGAGTGCCTAGCAGGGAGGATCATGACCAAGAGAGCGCAATCTTCCAAGCTCTTATTTTATGATCTTTATGGTGGTGGTGAGAAAGTTCAAGTTTTTGCTGATGCCAGGACCTCAGAGTTGGAAGATAATGAATTCATTAAGTTTCACTCTACTCTGAAACGAGGTGATATTGTTGGTGTATGTGGTTATCCAGGAAAGAGCAAGAGAGGGGAGCTCAGTATATTCCCAAAGAAAATTGTTGTGCTCTCCCCATGCCTTCATATGATGCCTCGACAGAAGAGTGAGGGAAGTGCTGTTCCCACTCCATGGGCTCCAGGAATGGGTAGGAACATCGAAAAGTATGTTTTGAGGGACCAGGAAACCCGATATCGTCAACGATATCTTGATCTCATGGTAAACCATGAAGTGAGGCATATATTCAAGACAAGATCAAA ]
[-] EMBL CB627678 [ ATTGACCAATTAGAGGCTATGGCTAAACTCAATATACCTAAAGATCTCTCAAGTGATGAAGCAAACAAGTATTTGATAGATGCCTGTGCCAAATATGATGTCAAATGCCCACCTCCCCAGACTACAACACGGTTGCTTGATAAGCTAGTTGGCCATTTCTTGGAGGAGACATGTGTGAATCCCACGTTTATTATCAACCATCCAGAGATAATGAGTCCATTGGCAAAGTGGCATAGGTCTCGACCTGGATTGACTGAGAGGTTTGAGCTCTTTGTTAACAAGCATGAGGTGTGCAATGCATATACAGAGTTAAATGATCCTGTTGTTCAGAGGCAACGGTTTGAGGAACAACTAAAGGATCGTCAATCTGGTGATGATGAAGCTATGGCATTGGATGAAACATTCTGCACAGCCCTTGAGTATGGCCTACCACCGACTGGTGGTTGGGGATTGGGAATTGATCGCCTTACAATGTTGCTGACTGATTCTCAGAATATCAAGGAAGTTCTTCTATTCCCGGCTATGAAGCCTCAAGATTAGATATGTCCACAAAGCAGGAACCTGTCAGAAGGATTAAAGCAGACTGAATGCTGACTGAGAGGATTTCAATTGGCCCTCGAGATGGAGGATTTGAAGGAAACTTATAATTTTGTTTTAATTGTGCATGTGAGGTTTCCATGTCCTATTGTACTTTATTTTTGGAGAACATTGGTGGTCAGTTAAGCAAACAGTTAATCTCGCTGCAAAGATATCAAGCGTAACTTATAAGATGAAAAGAGTTTGTGCAATTTCTGTGGCCT ]
[-] EMBL CB644606 [ AGTGATGAAGCAAACAAGTATTTGATAGATGCCTGTGCCAAATATGATGTCAAATGCCCACCTCCCCAGACTACAACACGGTTGCTTGATAAGCTAGTTGGCCATTTCTTGGAGGAGACATGTGTGAATCCCACGTTTATTATCAACCATCCAGAGATAATGAGTCCATTGGCAAAGTGGCATAGGTCTCGACCTGGATTGAATGAGAGGTTTGAGCTCTTTGTTAACAAGCATGAGGTGTGCAATGCATATACAGAGTTAAATGATCTTGTTGTTCAGAGGCAACGGTTTGAGGAACAACTAAAGGATCGTCAATCTGGTGATGATGAAGCTATGGCATTGGATGAAACATTCTGCACAGCCCTTGAGTATGGCCTACCACCGACTGGTGGTTGGGGATTGGGAATTGATCGCCTTACAATGTTGCTGCCTGATTCTCAGAATATCAAGGAAGTTCTTCTATTCCCGGTTATGAAGCCTCAAGATTAGATATGTCCACAAAGCAGGAACCTGTCAGAAGGATTAAAGCAGATTGAATGCTGATTGAGAGGATTTCAATTGGCCCTCGAGATGGAGGATTTGAAGGAAACTTATAATTTTGTTTTAATTGTGCATGTGAGGTTTCCATGTCCTATTGTACTTTATTTTTGGAGAACATTGGTGGTCAGTTAAGCAAACAGTTAATCTCGCTGCAAAGATATCAAGGGTAACTTATAAGAT ]
[-] EMBL CF321534 [ TCCCACGTTTATTATCAACCATCCAGAGATAATGAGTCCATTGGCAAAGTGGCATAGGTCTCGACCTGGATTGACTGAGAGGTTTGAGCTCTTTGTTAACAAGCATGAGGTGTGCAATGCATATACAGAGTTAAATGATCCTGTTGTTCAGAGGCAACGGTTTGAGGAACAACTAAAGGATCGTCAATCTGGTGATGATGAAGCTATGGCATTGGATGAAACATTCTGCACAGCCCTTGAGTATGGCCTACCACCGACTGGTGGTTGGGGATTGGGAATTGATCGCCTTACAATGTTGCTGACTGATTCTCAGAATATCAAGGAAGTTCTTCTATTCCCGGCTATGAAGCCTCAAGATTAGATATGTCCACAAAGCAGGAACCTGTCAGAAGGATTAAAGCAGACTGAATGCTGACTGAGAGGATTTCAATTGGCCCTCGAGATGGAGGATTTGAAGGAAACTTATAATTTTGTTTTAATTGTGCATGTGAGGTTTCCATGTCCTATTGTACTTTATTTTTGGAGAACATTGGTGGTCAGTTAAGCAAACAGTTAATCTCGCTGCAAAGATATCAAGCGTAACTTATAAGATGACTTAAGTTTGTGCAAaaa ]
[+] EMBL OSS1351A [ CACGTTTATTATCAACCATCCAGAGATAATGAGTCCATTGGCAAAGTGGCATAGGTCTCGACCTGGATTGACTGAGAGGTTTGAGCTCTTTGTTAACAAGCATGAGGTGTGCAATGCATATACAGAGTTAAATGATCCTGTTGTTCAGAGGCAACGGTTTGAGGAACAACTAAAGGATCGTCAATCTGGTGATGATGAAGCTATGGCATTGGATGAAACATTCTGCACAGCCCTTGAGTATGGCCTACCACCGACTGGTGGTTGGGGATTGGGAATTGATCGCCTTACAATGTTGCTGACTGATTCTCAGAATATCAAGGAAGTTCTTCTATTCCCGGCTATGAAGCC ]
[+] EMBL AA752587 [ AGTTAAATGATCCTGTTGTTCAGAGGCAACGGTTTGAGGAACAACTAAAGGATCGTCAATCTGGTGATGATGAAGCTATGGCATTGGATGAAACATTCTGCACAGCCCTTGAGTATGGCCTACCACCGACTGGTGTTTGGGGATTGGGAATTGATCGCCTTACAATGTTGCTGACTGATTCTCAGAATATCAAGGAAGTTCTTCTATTCCCGGCTATGAAGCCTCAAGATTAGATATGTCCACAAAGCAGGAACCTGTCAGAAGGATTAAAGCAGACTGAATGCTGACTGAGAGGATTTCAATTGGCCCTCGAGATGGAGGATTTGAAGGAAACTTATAATTTTGTTTTAATTGTGCATGTGAGGTTTCCATGTCCTATTGTACTTTATTTTTGGAGAACATTGGTGGTCAGTTAAGCAAACAGTTA ]
[+] EMBL AA751176 [ TGGCCTACCACCGACTGGT GTTGGGGATTGGGAATTGATCNCCTTACAATGTTGCTGACTGATTCTCAGAATATCAAGGAAGTTCTTCTATTCCCGGCTATGAAGCCTCAAGATTAGATATGTCCACAAAGCAGGAACCTGTCAGAAGGATTAAAGCAGACTGAATGCTGACTGAGAGGA TTCA T NCCTCGAGATGGAGGA TTGA G AAC TATAATcgacta ]
consensusID : consensus_13291#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 542 fasta sequence
[CATGGACTGAGGAGTAGAAATAAACATGAGGCTTTATATGCGTATTGCTCCTGAGCTCTATCTGAAGGAATTGGTTGTTGGGGGGCTGGATCGTGTTTATGAAATTGGGAAGCAGTTCAGGAATGAAGGAATTGACCTGACGCACAATCCTGAATTCACAACATGTGAATTTTATATGGCATATGCAGATTACAATGACTTGATAGAGCTTACTGAAACCATGTTATCTGGTATGGTTAAGGAGTTGACAGGTGGCTACAAGATTAAATATCATGCTAACGGAGTTGAGAAACCACCAATAGAGATTGATTACACACCTCCCTTCAGAAAGATAGACATGATTGAAGAATTAGAGGCTATGGCTAAACTCAATATACCTAAAGATCTCTCAAGTGATGAAGCAAACAAGTATTTGATAGATGCCTGTGCCAAATATGATGTCAAATGCCCACCTCCCCAGACTACAACACGGTTGCTTGATAAGGAGACATGTGTGAATCCCACGTTTATTATCAACCATCCAGAGATAATGAGTCCATTGG]
[+] EMBL CF321533 [CATGGACTGAGGAGTAGAAATAAACATGAGGCTTTATATGCGTATTGCTCCTGAGCTCTATCTGAAGGAATTGGTTGTTGGGGGGCTGGATCGTGTTTATGAAATTGGGAAGCAGTTCAGGAATGAAGGAATTGACCTGACGCACAATCCTGAATTCACAACATGTGAATTTTATATGGCATATGCAGATTACAATGACTTGATAGAGCTTACTGAAACCATGTTATCTGGTATGGTTAAGGAGTTGACAGGTGGCTACAAGATTAAATATCATGCTAACGGAGTTGAGAAACCACCAATAGAGATTGATTACACACCTCCCTTCAGAAAGATAGACATGATTGAAGAATTAGAGGCTATGGCTAAACTCAATATACCTAAAGATCTCTCAAGTGATGAAGCAAACAAGTATTTGATAGATGCCTGTGCCAAATATGATGTCAAATGCCCACCTCCCCAGACTACAACACGGTTGCTTGATAAGGAGACATGTGTGAATCCCACGTTTATTATCAACCATCCAGAGATAATGAGTCCATTGG]
consensusID : consensus_13291#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 383 fasta sequence
[ACCCCCCTTCTCCCTTGCGCCTCCGCTTCGCGAGCCTCATCTCCTCGATCTCTTTCGATTCAGTGGAAAACCTAGGAGACCGGCGCGGCATGGCGGAGTCGGGCTCGTCGGGCCTGGAGGAGAAGCTGGCGGGTCTCTCCGCGGGCTGCGGCGAGGAGCCGCANAAGCTCTCGAAGAATGCCAAGAAGAGGGAGGAGAAAAGGAAGAAGCAGGAGGAGGAGCGCCGGTTGAAGGAGGAAGAGAAGAAGAAGAAGGCCGCTGCAACAGCAGCTGCTAGTGGAGAGCCCCCGAAGGAATCTGCCGCCGACGATGAGGAAATGGATCCCACTACATGTGTTTCTTGCTGCAGCAATATTATGAGAATCGCCTCAAGGCACTTGATT]
[+] EMBL AU068952 [ACCCCCCTTCTCCCTTGCGCCTCCGCTTCGCGAGCCTCATCTCCTCGATCTCTTTCGATTCAGTGGAAAACCTAGGAGACCGGCGCGGCATGGCGGAGTCGGGCTCGTCGGGCCTGGAGGAGAAGCTGGCGGGTCTCTCCGCGGGCTGCGGCGAGGAGCCGCANAAGCTCTCGAAGAATGCCAAGAAGAGGGAGGAGAAAAGGAAGAAGCAGGAGGAGGAGCGCCGGTTGAAGGAGGAAGAGAAGAAGAAGAAGGCCGCTGCAACAGCAGCTGCTAGTGGAGAGCCCCCGAAGGAATCTGCCGCCGACGATGAGGAAATGGATCCCACTACATGTGTTTCTTGCTGCAGCAATATTATGAGAATCGCCTCAAGGCACTTGATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13291#0 CTAACCCTAGCTAAACCCCCCTTCTCCCTTGCGCCTCCGCTTCGCGAGCCTCATCTCCTC 60
consensus_13291#1 ------------------------------------------------------------
consensus_13291#2 ------------------------------------------------------------
consensus_13291#0 GATCTCTTTCGATTCAGTGGAAAACCTAGGAGACCGGCGCGGCATGGCGGAGTCGGGCTC 120
consensus_13291#1 ------------------------------------------------------------
consensus_13291#2 ------------------------------------------------------------
consensus_13291#0 GTCGGGCCTGGAGGAGAAGCTGGCGGGTCTCTCCGCGGGCTGCGGCGAGGAGCCGCAGCA 180
consensus_13291#1 ------------------------------------------------------------
consensus_13291#2 ------------------------------------------------------------
consensus_13291#0 GCTCTCGAAGAATGCCAAGAAGAGGGAGGAGAAAAGGAAGAAGCAGGAGGAGGAGCGCCG 240
consensus_13291#1 ------------------------------------------------------------
consensus_13291#2 ------------------------------------------------------------
consensus_13291#0 GTTGAAGGAGGAAGAGAAGAAGAAGAAGGCCGCTGCAACAGCAGCTGCTAGTGGAGAGCC 300
consensus_13291#1 ------------------------------------------------------------
consensus_13291#2 ------------------------------------------------------------
consensus_13291#0 CCCGAAGGAATCTGCCGCCGACGATGAGGAAATGGATCCCACTCAATATTATGAGAATCG 360
consensus_13291#1 ------------------------------------------------------------
consensus_13291#2 ------------------------------------------------------------
consensus_13291#0 CCTCAAGGCACTTGATTCACTCAAGGCCACGGGTGTAAACCCCTATCCCCATAAGTTCCT 420
consensus_13291#1 ------------------------------------------------------------
consensus_13291#2 ------------------------------------------------------------
consensus_13291#0 GGCTAATATTACCGTAGCCGATTATATTGAGAAATACAAGAGCATGAATGTTGGGGATAA 480
consensus_13291#1 ------------------------------------------------------------
consensus_13291#2 ------------------------------------------------------------
consensus_13291#0 GCTTGTTGACGTCACCGAGTGCCTAGCAGGGAGGATCATGACCAAGAGAGCGCAATCTTC 540
consensus_13291#1 ------------------------------------------------------------
consensus_13291#2 ------------------------------------------------------------
consensus_13291#0 CAAGCTCTTATTTTATGATCTTTATGGTGGTGGTGAGAAAGTTCAAGTTTTTGCTGATGC 600
consensus_13291#1 ------------------------------------------------------------
consensus_13291#2 ------------------------------------------------------------
consensus_13291#0 CAGGACCTCAGAGTTGGAAGATAATGAATTCATTAAGTTTCACTCTACTCTGAAACGAGG 660
consensus_13291#1 ------------------------------------------------------------
consensus_13291#2 ------------------------------------------------------------
consensus_13291#0 TGATATTGTTGGTGTATGTGGTTATCCAGGAAAGAGCAAGAGAGGGGAGCTCAGTATATT 720
consensus_13291#1 ------------------------------------------------------------
consensus_13291#2 ------------------------------------------------------------
consensus_13291#0 CCCAAAGAAAATTGTTGTGCTCTCCCCATGCCTTCATATGATGCCTCGACAGAAGAGTGA 780
consensus_13291#1 ------------------------------------------------------------
consensus_13291#2 ------------------------------------------------------------
consensus_13291#0 GGGAAGTGCTGTTCCCACTCCATGGGCTCCAGGAATGGGTAGGAACATCGAAAAGTATGT 840
consensus_13291#1 ------------------------------------------------------------
consensus_13291#2 ------------------------------------------------------------
consensus_13291#0 TTTGAGGGACCAGGAAACCCGATATCGTCAACGATATCTTGATCTCATGGTAAACCATGA 900
consensus_13291#1 ------------------------------------------------------------
consensus_13291#2 ------------------------------------------------------------
consensus_13291#0 AGTGAGGCATATTTTCAAGACAAGATCAAAAGTTGTCTCTTTTATTCGGAAATTTCTTGA 960
consensus_13291#1 ------------------------------------------------------------
consensus_13291#2 ------------------------------------------------------------
consensus_13291#0 TGGTCTTGACTTTTTAGAGGTGGAGACTCCAATGATGAACATGATTGCAGGTGGAGCAGC 1020
consensus_13291#1 ------------------------------------------------------------
consensus_13291#2 ------------------------------------------------------------
consensus_13291#0 TGCAAGGCCTTTTGTCACACATCATAATGAGTTAAACATGAGGCTTTATATGCGTATTGC 1080
consensus_13291#1 ------------CATGGACTGAGGAGTAGAAATAAACATGAGGCTTTATATGCGTATTGC 48
consensus_13291#2 ------------------------------------------------------------
consensus_13291#0 TCCTGAGCTCTATCTGAAGGAATTGGTTGTTGGGGGGCTGGATCGTGTTTATGAAATTGG 1140
consensus_13291#1 TCCTGAGCTCTATCTGAAGGAATTGGTTGTTGGGGGGCTGGATCGTGTTTATGAAATTGG 108
consensus_13291#2 -----------------------------------------ACCCCCCTTCTCCCTTGCG 19
* * ** * * *
consensus_13291#0 GAAGCAGTTCAGGAA--TGAAGGAATTGACCTGACGCACAATCCTGAATTCACAACATGT 1198
consensus_13291#1 GAAGCAGTTCAGGAA--TGAAGGAATTGACCTGACGCACAATCCTGAATTCACAACATGT 166
consensus_13291#2 CCTCCGCTTCGCGAGCCTCATCTCCTCGATCT--CTTTCGATTC--AGTGGAAAACCTAG 75
* *** ** * * * ** ** * * ** * * * * *** *
consensus_13291#0 GAATTTTATATGGCATATGCAGATTACAATGACTTGATAGAGCTTACTGAAACCATGTTA 1258
consensus_13291#1 GAATTTTATATGGCATATGCAGATTACAATGACTTGATAGAGCTTACTGAAACCATGTTA 226
consensus_13291#2 GAGACCGGCGCGGCATG-GCGGAGT----CGGGCTCGTCGGGCCTG--GAGGAGAAGCTG 128
** ***** ** ** * * * * * ** * ** * * *
consensus_13291#0 TCTGGTATGGTTAAGGAGT-TGACAGGTGGCTACAAGA--TTAAATATCATGCTAACGGA 1315
consensus_13291#1 TCTGGTATGGTTAAGGAGT-TGACAGGTGGCTACAAGA--TTAAATATCATGCTAACGGA 283
consensus_13291#2 GCGGGTCTCTCCGCGGGCTGCGGCGAGGAGCCGCANAAGCTCTCGAAGAATGCCAAGAAG 188
* *** * ** * * * * ** ** * * * **** **
consensus_13291#0 GTTGAGAAACCACCAATAGAGATTGATTCCACACCTCCCTTCAGAAAGATAGACGTGATT 1375
consensus_13291#1 GTTGAGAAACCACCAATAGAGATTGATTACACACCTCCCTTCAGAAAGATAGACATGATT 343
consensus_13291#2 AGGGAGGAGAAAAGGAAGAAGCAGGAGGAGGAGCGCCGGTTGAAGGAGGAAGAGAAGAA- 247
*** * * * ** ** * * ** * ** *** **
consensus_13291#0 GAAGAATTAGAGGCTATGGCTAAACTCAATATACCTAAAGATCTCTCAAGTGATGAAGCA 1435
consensus_13291#1 GAAGAATTAGAGGCTATGGCTAAACTCAATATACCTAAAGATCTCTCAAGTGATGAAGCA 403
consensus_13291#2 GAAGAA-----GGCCGCTGCAACAGCAGCTGCTAGTGGAGAGCCCCCGAAGGAATCTGCC 302
****** *** ** * * * * *** * * * * ** **
consensus_13291#0 AACAAGTATTTGATAGATGCCTGTGCCAAATATGATGTCAAATGC--CCACCTCCCCAGA 1493
consensus_13291#1 AACAAGTATTTGATAGATGCCTGTGCCAAATATGATGTCAAATGC--CCACCTCCCCAGA 461
consensus_13291#2 GCCGACGATGAGGAAATGGATCCCACTACATGTGTTTCTTGCTGCAGCAATATTATGAGA 362
* * ** * * * * * ** ** * *** * * * ***
consensus_13291#0 CTACAACACGGTTGCTTGATAAGCTAGTTGGCCATTTCTTGGAGGAGACATGTGTGAATC 1553
consensus_13291#1 CTACAACACGGTTGCTTGATAAG---------------------GAGACATGTGTGAATC 500
consensus_13291#2 ATCGCCTCAAGGCACTTGATT--------------------------------------- 383
* * ******
consensus_13291#0 CCACGTTTATTATCAACCATCCAGAGATAATGAGTCCATTGGCAAAGTGGCATAGGTCTC 1613
consensus_13291#1 CCACGTTTATTATCAACCATCCAGAGATAATGAGTCCATTGG------------------ 542
consensus_13291#2 ------------------------------------------------------------
consensus_13291#0 GACCTGGATTGACTGAGAGGTTTGAGCTCTTTGTTAACAAGCATGAGGTGTGCAATGCAT 1673
consensus_13291#1 ------------------------------------------------------------
consensus_13291#2 ------------------------------------------------------------
consensus_13291#0 ATACAGAGTTAAATGATCCTGTTGTTCAGAGGCAACGGTTTGAGGAACAACTAAAGGATC 1733
consensus_13291#1 ------------------------------------------------------------
consensus_13291#2 ------------------------------------------------------------
consensus_13291#0 GTCAATCTGGTGATGATGAAGCTATGGCATTGGATGAAACATTCTGCACAGCCCTTGAGT 1793
consensus_13291#1 ------------------------------------------------------------
consensus_13291#2 ------------------------------------------------------------
consensus_13291#0 ATGGCCTACCACCGACTGGTGGTTGGGGATTGGGAATTGATCGCCTTACAATGTTGCTGA 1853
consensus_13291#1 ------------------------------------------------------------
consensus_13291#2 ------------------------------------------------------------
consensus_13291#0 CTGATTCTCAGAATATCAAGGAAGTTCTTCTATTCCCGGCTATGAAGCCTCAAGATTAGA 1913
consensus_13291#1 ------------------------------------------------------------
consensus_13291#2 ------------------------------------------------------------
consensus_13291#0 TATGTCCACAAAGCAGGAACCTGTCAGAAGGATTAAAGCAGACTGAATGCTGACTGAGAG 1973
consensus_13291#1 ------------------------------------------------------------
consensus_13291#2 ------------------------------------------------------------
consensus_13291#0 GATTTCAATTGGCCCTCGAGATGGAGGATTTGAAGGAAACTTATAATTTTGTTTTAATTG 2033
consensus_13291#1 ------------------------------------------------------------
consensus_13291#2 ------------------------------------------------------------
consensus_13291#0 TGCATGTGAGGTTTCCATGTCCTATTGTACTTTATTTTTGGAGAACATTGGTGGTCAGTT 2093
consensus_13291#1 ------------------------------------------------------------
consensus_13291#2 ------------------------------------------------------------
consensus_13291#0 AAGCAAACAGTTAATCTCGCTGCAAAGATATCAAGCGTAACTTATAAGATGACTTAAGTT 2153
consensus_13291#1 ------------------------------------------------------------
consensus_13291#2 ------------------------------------------------------------
consensus_13291#0 TGTGCAATTTCTGTGGCCTTACTTGAAAATGATAGCGCGTTATT 2197
consensus_13291#1 --------------------------------------------
consensus_13291#2 --------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||