cluster # 13296

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Oryza sativa
cluster # 13296 cluster # 13296 Sequences # 12 consensus # 1
see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13296#0 length = 563 sequences # 12
consensusID : consensus_13296#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 563
fasta sequence
                              [GCTTATTGGAGAGAAAAAAGGGTCGAAGCGCAA-CAAATCGATCAGCAACACAAGATGAAGAAGATGCGGATGGCAATGGTGAGCCTGGCCCTGGTGCTGGTGGGGCTTCTCCTCGTCGCCACCACTGCTAACGCCAAGAACGCCC-ATGCCGGTGGCTTGAAGAAGGGCGGCTCTGAAGCTGAAGGCCG-CGTCGTCTACGCCGACATGAGATTGGTCGTTCCCTCCGACTCCGACTCCGCCCCCGCCCCCGCCCC-TGCCTCCGCCTC-TGAT-GGGCCAGCACC-TGCGCCATCCCCCAACAATTAATTCAACATCGACCTAGCATATATATATACGTATAT-ATTTGTT-ATTTTC-ATGTGTTGTTTTCGCATTTT-ATATAACCATGCGCGCTCTAGTTGTACATGCAGCCGATTGATGTGCATTTGATTTATGCCTGCTCATTTTTATTTCTTTCTTTTTATTTACGTTAAATGAAACACTTTC-TCCATGCATACATGGTTGTTCTTATTTTATTTATTATAAGGATATATATATATATATATATGCGCAAAAAAAAAGACCAAAAA]

[+] EMBL C73252               [GCTTATTGGAGAGAAAAAAGGGTCGAAGCGCAA NAAATCGATCAGCAACACAAGATGAAGAAGATGCGGATGGCAATGGTGAGCCTGGCCCTGGTGCTGGTGGGGCTTCTCCTCGTCGCCACCACTGCTAACGCCAAGAACGCCC ATGCCGGTGGCTTGAAGAAGGGCGGCTCTGAAGCTGAAGGCCG CGTCGTCTACGCCGACATGAGATTGGTCGTTCCCTCCGACTCCGAC                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AU094174             [ CTTATTGGAGAGAAAAAAGGGTCGAAGCGCAAGCAAATCGATCAGCAACACAAGATGAAGAAGATGCGGATGGCAATGGTGAGCCTGGCCCTGGTGCTGGTGGGGCTTCTCCTCGTCGCCACCACTGCTAACGCCAAGAACGCCC ATGCCGGTGGCTTGAAGAAGGGCGGCTCTGAAGCTGAAGGCCG CGTCGTCTACGCCGACATGAGATTGGTCGTTCCCTCCGACTCCGACTCCGCCCCCGCCCCCGCCCC TGCCTCCGCCTC TGAT GGGCCAGCACC TGCGCCATCCCCCAACAATTAATTCAACATCGACCTAGCATATATATATACGTATAT ATTTGTT ATTTTC ATGTGTTGTTTTCGCATTTT ATATAACCATGCGCGCTCTAGTTGTACATGCAGCCGATTGATGTGCATTTGATTTATGCCTGCTCATTTTTATTTCTTTCTTTTTATTTACGTTAAATGAAACACTTTC TCCATGCATACATGGTTGTTCTTATTTTATTTATTATAAGGATATATATATATATATATATGCGCATTCAGTAAGACCAAAAA]
[+] EMBL C72687               [ CTTATTGGAGAGAAAAAAGGGTCGAAGCGCAA CAAATCGATCAGCAACACAAGATGAAGAAGATGCGGATGGCAATGGTGAGCCTGGCCCTGGTGCTGGTGGGGCTTCTCCTCGTCGCCACCACTGCTAACGCCAAGAACGCCC ATGCCGGTGGCTTGAAGAAGGGCGGCTCTGAAGCTGAAGGCCG CGTCGTCTACGCCGACATGAGATTGGTCGTTCCCTCCGACTCCGACTCCGCCCCCGCCCCCGCCCCTTGCCTCCGCCTCTTGATGGGGCCAGCACCTTGCGCCATCCCCCAACAATTAATTCAACATCGACCTAGCATATATATATACGTATAT ATTTGTTAATTTTC ATGTGTTGTTTTCGCATTTT ATATNACCATGCGCGCTCTAGTTGTACATGCAGCCGATTGATGTGCATTTGATTAATGCCTGC CATT                                                                                                                             ]
[+] EMBL AU165520             [  TTATTGGAGAGAAAAAAGGGTCGAAGCGCAAGCAAATCGATCAGCAACACAAGATGAAGAAGATGCGGATGGCAATGGTGAGCCTGGCCCTGGTGCTGGTGGGGCTTCTCCTCGTCGCCACCACTG TAACGCCAAGAACGCCC ATGCCGGTGGCTTGAAGAAGGGCGGCTCTGAAGCTGAAGGCCGACGTCGTCTACGCCGACATGAGATTGGTCGTTCCCTCCGACTCCGACTCCGCCCCCGCCCCCGCNCC TGCCTCCGCCTC TGAT GGGCCAGCACC TGCGCCATCCCCCAACAATTAATTCAACATCGACCTAGCATATATATATACGTATAT ATTTGTT ATTTTC ATGTGTTGTTTTCGCATTTT ATATAACCATGCGCGCTCTAGTTGTACATGCAGCCGATTGATGTGCATTTGATTTATGCCTGCTCATTTTTATTTCTTTCTTTTTATTTACGTTAAATGAAACACTTTC TCCATGCATAaaaaaaaa                                                                 ]
[+] EMBL AK121194             [   TATTGGAGAGAAAAAAGGGTCGAAGCGCAAGCAAATCGATCAGCAACACAAGATGAAGAAGATGCGGATGGCAATGGTGAGCCTGGCCCTGGTGCTGGTGGGGCTTCTCCTCGTCGCCACCACTGCTAACGCCAAGAACGCCC ATGCCGGTGGCTTGAAGAAGGGCGGCTCTGAAGCTGAAGGCCG CGTCGTCTACGCCGACATGAGATTGGTCGTTCCCTCCGACTCCGACTCCGCCCCCGCCCCCGCCCC TGCCTCCGCCTC TGAT GGGCCAGCACC TGCGCCATCCCCCAACAATTAATTCAACATCGACCTAGCATATATATATACGTATAT ATTTGCT ATTTTC ATGTGTTGTTTTCGCATTTT ATATAACCATGCGCGCTCTAGTTGTACATGCAGCCGATTGATGTGCATTTGATTTATGCCTGCTCATTTTTATTTCTTTCTTTTTATTTACGTTAAATGAAACACTTTC TCCATGCATACATGGTTGTTCTTATTTTATTTATTATAAGGATATATATATATATATATATG                     ]
[+] EMBL AU064015             [        GAGAGAAAAAAGGGTCGAAGCGCAA GAAATCGATCAGCAACACAAGATGAAGAAGATGCGGATGGCAATGGTGAGCCTGGCCCTGGTGCTGGTGGGGCTTCTCCTCGTCGCCACCACTGCTAACGCCAAGAACGCCC ATGCCGGTGGCTTGAAGAAGGGCGGCTCTGAAGCTGAAGGCCG CGTCGTCTACGCCGACATGAGATTGGTCGTTCCCTCCGACTCCGACTCCGCCCCCGCCCCCGCCCC TGCCTCCGCCTC TGAT GGGCCAGCANC TGCGCCATCCCCCAACAATTAATTCAACATCGACCTAGCATATATATATACGNATATAATTTGTN ATTTTCAATGTGTTGTTTTTGGATTTT ATATAAC                                                                                                                                                                                          ]
[+] EMBL AU065102             [        GAGAGAAAAAAGGGTCGAAGCGCAA NNAATCGATCAGCAACACAAGATGAAGAAGATGCGGATGGCAATGGTGAGCCTGGCCCTGGTGCTGGTGGGGCTTCTCCTCGTCGCCACCACTGCTAACGCCAAGAACGCCC ATGCCGGTGGCTTGAAGAAGGGCGGCTCTGAAGCTGAAGGCCG CGTCGTCTACGCCGACATGAGAATGGTCGTTCCCTCCGACTCCGACTCCGCNCCCGCCCCCGCCCC TGCTTCCGCCTC TTAN GGG CAACACCTTGCGCAATCC                                                                                                                                                                                                                                                                                     ]
[+] EMBL C73236               [                     GTCGAAGCGCAA NAAATCGATCAGCAACACAAGATGAAGAAGATGCGGATGGCAATGGTGAGCCTGGCCCTGGTGCTGGTGGGGCTTCTCCTCGTCGCCACCACTGCTAACGCCAAGAACGCCC ATGCCGGTGGCTTGAAGAAGGGCGGCTCTGAAGCTGAAGGCCG CGTCGTCTACGCCGACATGAGATTGGTCGTTCCCTCCGACTCCGACTCCGCCCCCGCCCCCGCCCC TGCCTCCGCCTC TAAT GGGCCAGCACC TGCGCCATCCCCCAACAATTAATTCAACATCGACCTAGCATATATATATACGTATAT ATTTGTN ATTTTC ATGTGTTGTTTTCGCATTTTAATATAACCATGCGCGCTCTAGNTGTACATGCAGCC                                                                                                                                                              ]
[+] EMBL C73211               [                                                              AGATGCGGATGGCAATGGTGAGCCTGGCCCTGGTGCTGGTGGGGCTTCTCCTCGTCGCCACCACTGCTAACGCCAAGAACGCCC ATGCCGGTGGCTTGAAGAAGGGCGGCTCTGAAGCTGAAGGCCG CGTCGTCTACGCCGACATGAGATTGGTCGTTCCCTCCGACTCCGACTCCGCCCCCGCCCCCGCCCC TGCCTCCGCCTC TNAT GGGCCAGCACC TGCGCCATCCCCCAACAATTAATTCAACATCGACCTAGCATATATATATACGTATAT ATTTGTT ATTTTC ATGTGTTGTTTTCGCATTTT ATATAACCATGCGCGCTCTAGTTGTACATGCAGCCGATTGATGTGCATTTGATTTATGCCTGCTCATTTTTAATTCCTTCCTTTTAATTACGGTAAATG AACANTTTCTTCCATGCATACATGNTGGTc                                                               ]
[+] EMBL AU182495             [                                                                                                                                   ACGCCAAGAACGCCCNATGCCGGTGGCTTGAAGAAGGGCGGCTCTGAAGCTGAAGGCCG CGTCGTCTACGCCGACATGAGATTGGTCGTTCCCTCCGACTCCGACTCCGCCCCCGCCCCCGCCCC TGCCTCCGCCTC TGAT GGGCCAGCACC TGCGCCATCCCCCAACAATTAATTCAACATCGACCTAGCATATATATATACGTATAT ATTTGTT ATTTTC ATGTGTTGTTTTCGCATTTT ATATAACCATGCGCGCTCTAGTTGTACATGCAGCCGATTGATGTGCATTTGATTTATGCCTGCTCATTTTTATTTCTTTCTTTTTATTTACGTTAAATGAAACACTTTC TCCATGCATACATGGTTGTTCTTATTTTATTTATTATAAGGATATATATATATATATATATGCGCAAAAAAA           ]
[+] EMBL AU172657             [                                                                                                                                    CGCCAAGAACGCCC ATGCCGGTGGCTTGAAGAAGGGCGGCTCTGAAGCTGAAGGCCG CGTCGTCTACGCCGACATGAGATTGGTCGTTCCCTCCGACTCCGACTCCGCCCCCGCCCCCGCCCC TGCCTCCGCCTC TGAT GGGCCAGCACC TGCGCCATCCCCCAACAATTAATTCAACATCGACCTAGCATATATATATACGTATAT ATTTGTT ATTTTC ATGTGTTGTTTTCGCATTTT ATATAACCATGCGCGCTCTAGTTGTACATGCAGCCGATTGATGTGCATTTGATTTATGCCTGCTCATTTTTATTTCTTTCTTTTTATTTACGTTAAATGAAACACTTTC TCCATGCANACATGGTTGTTCTTATTTTATTTATTATAAGGATATATATATATATATATATGCGCAAAAAAAAAaaa      ]
[+] EMBL AU094953             [                                                                                                                                                                                                                                                                         GCCTC TGAT GGGCCAGCACC TGCGCCATCCCCCAACAATTAATTCAACATCGACCTAGCATATATATATACGTATAT ATTTGTT ATTTTC ATGTGTTGTTTTCGCATTTT ATATAACCATGCGCGCTCTAGTTGTACATGCAGCCGATTGATGTGCATTTGATTTATGCCTGCTCATTTTTATTTCTTTCTTTTTATTTACGTTAAATGAAACACTTTC TCCATGCATACATGGTTGTTCTTATTTTATTTATTATAAGGATATATATATATATATATATGCGCAAAAAAA           ]




>consensus_13296#0
GCTTATTGGAGAGAAAAAAGGGTCGAAGCGCAACAAATCGATCAGCAACACAAGATGAAG
AAGATGCGGATGGCAATGGTGAGCCTGGCCCTGGTGCTGGTGGGGCTTCTCCTCGTCGCC
ACCACTGCTAACGCCAAGAACGCCCATGCCGGTGGCTTGAAGAAGGGCGGCTCTGAAGCT
GAAGGCCGCGTCGTCTACGCCGACATGAGATTGGTCGTTCCCTCCGACTCCGACTCCGCC
CCCGCCCCCGCCCCTGCCTCCGCCTCTGATGGGCCAGCACCTGCGCCATCCCCCAACAAT
TAATTCAACATCGACCTAGCATATATATATACGTATATATTTGTTATTTTCATGTGTTGT
TTTCGCATTTTATATAACCATGCGCGCTCTAGTTGTACATGCAGCCGATTGATGTGCATT
TGATTTATGCCTGCTCATTTTTATTTCTTTCTTTTTATTTACGTTAAATGAAACACTTTC
TCCATGCATACATGGTTGTTCTTATTTTATTTATTATAAGGATATATATATATATATATA
TGCGCAAAAAAAAAGACCAAAAA
clustalw multiple alignements is not computed in this case