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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13301#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1662 fasta sequence
[AAAAAAAAAAGAAAAGAGGAAGAAGGGGAAAAAAAGAAAGACTGCGAAAACCCTCGTAGAAGAAAACCCACCGGCGGCCGATGGC-GTCGCCGGCGAAGGCGCAGCGGCGGCCGGAGGGGGCCTCGGTGCTGGAGACCCTCCCCGCGCTCCCGCTCGCGATCATCATCGCCAAGGCCGGCCCCCGCTGCGCCGCCGCGCTCGCCTGCGCCAGCTCCACCCTCCGCGCCGCCGCCTCCGGCGAGGCCCTCTGGCGCCACTTCTGCTCCGACGACTTCGCCCTCGACGCCCCCCTCGCTCCCGGCGACCTCCCTCTCCCTTCCTTCAAGGATGCTTACAAAGCTTGGTTCCAATCTTTTGGGATGTACCCTTTGCCACTTGTTAAGA-GGGTGAAGATCTTCTGGAGCTCATTCA-GGGCATGGCTATGCGAGTA-TTTCCCGGAAGGGCTGAGGACTCTAGGGGAAGGCGTTTCGGAAGCCGAGATAGCCGTCGCGGAATGTAACCTGGGCCTTGTGCTTCCTATGCCCACTAAGCTACTGTACCGTTTCTGCAACGGCCAGCTGCACATTGGCCGCGGCGAGGAGGTCTCGTACGGCGTTATGGGAGGCTATGATTATGTTCACCAGAGGTATACCGTGCGCTTGCTACCGCTCGCGCACCATGCTGTTCAGAAAAACTCAAACTACATTGTAGTTGCGACGAGTTGTTTTGGGGAGAAGATATTTCTTCTTGATTGTGCGAGTGGCCGTCTTTATGTCGGCACCAAGTATTGGAATGAAGAAAGAGAAATCATGGCATGCGTGCCAAAAGCGACAATAAGGCTCGCTGTGGATGATGATCATGGCATGCCTCAAGATGGATTTCTGCTGTGGTTGGAAGAGCACCTTAGTCGCCTACAGGATGGCTTGATCAAGGTGCAGAGTTGTAAATTCCCAATGCTGGCAAGGCATATCAGTTTGTATCCAGTACAACTCCCTTACTGTTCGTCGGCAAGTATGCATGGTATCAAGGTTCGTGCCTCTGCTGTCTTTGCCCCAGAAAACTCTGCTTTCGCTGATTACCGATGCAGATATTCGTACTATTTCTCCATTCGTCTATCCCTTCCTGAAGCATTCGTTGTAGATGGCAAGTGGTATTCTTCCTTCCAGCTTCAGTCATGCCACTACACTATTCAGATTGGAGATGAAGTCCTCCCTTACACATGCAACTATGGCGGCCATGGCAAGTGTCCTCTCCTGAGGTGCGGCGAGGAGCTGTTTGTCTATGGGTGTTCCATATCGGCAGCACTGGAGCCTGGATCCGTGATGGGCAACTTGACGCTTGTCCCTTGGAGGTGTGGTCAGCCTAGAGGAAGCCCTTTTATTGCCGACATAGCTCCTTTCCCTCTGCACCCGCCTGACTACATCTTCTGAAGAATTGGAAGCTGGTCCATCAAAGCATGCATGCAGTTGAGGCTAATTCTTGCTAGAGCGCCTTGTTGGAAATTTTCCTGGATATATTTTTGTACGTGCAGCTCTCGGAATTGTTGTCTTGACAAGTGACGAAAGTCTCATGAGCTGTGAATTATATATACACACACACACAACACACTTTTCGGCAGTGACATGATGTTACTTTTCGGCAGTGACATGATGTTCCGTTTGTTAATGCGGCTTGCTTGCTTCT]
[+] EMBL AK071935 [AAAAAAAAAAGAAAAGAGGAAGAAGGGGAAAAAAAGAAAGACTGCGAAAACCCTCGTAGAAGAAAACCCACCGGCGGCCGATGGC GTCGCCGGCGAAGGCGCAGCGGCGGCCGGAGGGGGCCTCGGTGCTGGAGACCCTCCCCGCGCTCCCGCTCGCGATCATCATCGCCAAGGCCGGCCCCCGCTGCGCCGCCGCGCTCGCCTGCGCCAGCTCCACCCTCCGCGCCGCCGCCTCCGGCGAGGCCCTCTGGCGCCACTTCTGCTCCGACGACTTCGCCCTCGACGCCCCCCTCGCTCCCGGCGACCTCCCTCTCCCTTCCTTCAAGGATGCTTACAAAGCTTGGTTCCAATCTTTTGGGATGTACCCTTTGCCACTTGTTAAGA GGGTGAAGATCTTCTGGAGCTCATTCA GGGCATGGCTATGCGAGTA TTTCCCGGAAGGGCTGAGGACTCTAGGGGAAGGCGTTTCGGAAGCCGAGATAGCCGTCGCGGAATGTAACCTGGGCCTTGTGCTTCCTATGCCCACTAAGCTACTGTACGGTTTCTGCAACGGCCAGCTGCACATTGGCCGCGGCGAGGAGGTCTCGTACGGCGTTATGGGAGGCTATGATTATGTTCACCAGAGGTATACCGTGCGCTTGCTACCGCTCGCGCACCATGCTGTTCAGAAAAACTCAAACTACATTGTAGTTGCGACGAGTTGTTTTGGGGAGAAGATATTTCTTCTTGATTGTGCGAGTGGCCGTCTTTATGTCGGCACCAAGTATTGGAATGAAGAAAGAGAAATCATGGCATGCGTGCCAAAAGCGACAATAAGGCTCGCTGTGGATGATGATCATGGCATGCCTCAAGATGGATTTCTGCTGTGGTTGGAAGAGCACCTTAGTCGCCTACAGGATGGCTTGATCAAGGTGCAGAGTTGTAAATTCCCAATGCTGGCAAGGCATATCAGTTTGTATCCAGTACAACTCCCTTACTGTTCGTCGGCAAGTATGCATGGTATCAAGGTTCGTGCCTCTGCTGTCTTTGCCCCAGAAAACTCTGCTTTCGCTGATTACCGATGCAGATATTCGTACTATTTCTCCATTCGTCTATCCCTTCCTGAAGCATTCGTTGTAGATGGCAAGTGGTATTCTTCCTTCCAGCTTCAGTCATGCCACTACACTATTCAGATTGGAGATGAAGTCCTCCCTTACACATGCAACTATGGCGGCCATGGCAAGTGTCCTCTCCTGAGGTGCGGCGAGGAGCTGTTTGTCTATGGGTGTTCCATATCGGCAGCACTGGAGCCTGGATCCGTGATGGGCAACTTGACGCTTGTCCCTTGGAGGTGTGGTCAGCCTAGAGGAAGCCCTTTTATTGCCGACATAGCTCCTTTCCCTCTGCACCCGCCTGACTACATCTTCTGAAGAATTGGAAGCTGGTCCATCAAAGCATGCATGCAGTTGAGGCTAATTCTTGCTAGAGCGCCTTGTTGGAAATTTTCCTGGATATATTTTTGTACGTGCAGCTCTCGGAATTGTTGTCTTGACAAGTGACGAAAGTCTCATGAGCTGTGAATTATATATACACACACACACAACAC ]
[+] EMBL AK103706 [ AAAAAAAAGAAAAGAGGAAGAAGGGGAAAAAAAGAAAGACTGCGAAAACCCTCGTAGAAGAAAACCCACCGGCGGCCGATGGC GTCGCCGGCGAAGGCGCAGCGGCGGCCGGAGGGGGCCTCGGTGCTGGAGACCCTCCCCGCGCTCCCGCTCGCGATCATCATCGCCAAGGCCGGCCCCCGCTGCGCCGCCGCGCTCGCCTGCGCCAGCTCCACCCTCCGCGCCGCCGCCTCCGGCGAGGCCCTCTGGCGCCACTTCTGCTCCGACGACTTCGCCCTCGACGCCCCCCTCGCTCCCGGCGACCTCCCTCTCCCTTCCTTCAAGGATGCTTACAAAGCTTGGTTCCAATCTTTTGGGATGTACCCTTTGCCACTTGTTAAGA GGGTGAAGATCTTCTGGAGCTCATTCA GGGCATGGCTATGCGAGTA TTTCCCGGAAGGGCTGAGGACTCTAGGGGAAGGCGTTTCGGAAGCCGAGATAGCCGTCGCGGAATGTAACCTGGGCCTTGTGCTTCCTATGCCCACTAAGCTACTGTACCGTTTCTGCAACGGCCAGCTGCACATTGGCCGCGGCGAGGAGGTCTCGTACGGCGTTATGGGAGGCTATGATTATGTTCACCAGAGGTATACCGTGCGCTTGCTACCGCTCGCGCACCATGCTGTTCAGAAAAACTCAAACTACATTGTAGTTGCGACGAGTTGTTTTGGGGAGAAGATATTTCTTCTTGATTGTGCGAGTGGCCGTCTTTATGTCGGCACCAAGTATTGGAATGAAGAAAGAGAAATCATGGCATGCGTGCCAAAAGCGACAATAAGGCTCGCTGTGGATGATGATCATGGTATGCCTCAAGATGGATTTCTGCTGTGGTTGGAAGAGCACCTTAGTCGCCTACAGGATGGCTTGATCAAGGTGCAGAGTTGTAAATTCCCAATGCTGGCAAGGCATATCAGTTTGTATCCAGTACAACTCCCTTACTGTTCGTCGGCAAGTATGCATGGTATCAAGGTTCGTGCCTCTGCTGTCTTTGCCCCAGAAAACTCTGCTTTCGCTGATTACCGATGCAGATATTCGTACTATTTCTCCATTCGTCTATCCCTTCCTGAAGCATTCGTTGTAGATGGCAAGTGGTATTCTTCCTTCCAGCTTCAGTCATGCCACTACACTATTCAGATTGGAGATGAAGTCCTCCCTTACACATGCAACTATGGCGGCCATGGCAAGTGTCCTCTCCTGAGGTGCGGCGAGGAGCTGTTTGTCTATGGGTGTTCCATATCGGCAGCACTGGAGCCTGGATCCGTGATGGGCAACTTGACGCTTGTCCCTTGGAGGTGTGGTCAGCCTAGAGGAAGCCCTTTTATTGCCGACATAGCTCCTTTCCCTCTGCACCCGCCTGACTACATCTTCTGAAGAATTGGAAGCTGGTCCATCAAAGCATGCATGCAGTTGAGGCTAATTCTTGCTAGAGCGCCTTGTTGGAAATTTTCCTGGATATATTTTTGTACGTGCAGCTCTCGGAATTGTTGTCTTGACAAGTGACGAAAGTCTCATGAGCTGTGAATTATATATACACACACACACAACACACTTTTCGGCAGTGACATGATGTTACTTTTCGGCAGTGACATGATGTTCCGTTTGTTAATGCGGCTTGCTTGCTTCT]
[+] EMBL AU181984 [ AGAAGGGGAAAAAAAGAAAGACTGCGAAAACCCTCGTAGAAGAAAACCCACCGGCGGCCGATGGCTGTCGCCGGCGAAGGCGCAGCGGCGGCCGGAGGGGGCCTCGGTGCTGGAGACCCTCCCCGCGCTCCCGCTCGCGATCATCATCGCCAAGGCCGGCCCCCGCTGCGCCGCCGCGCTCGCCTGCGCCAGCTCCACCCTCCGCGCCGCCGCCTCCGGCGAGGCCCTCTGGCGCCACTTCTGCTCCGACGACTTCGCCCTCGACGCCCCCCTCGCTCCCGGNGACCTCCCTCTCCCTTCCTTCAAGGATGCTTACAAAGCTTGGTTCCAATCTTTTGGGATGTNCCCTTT ]
[+] EMBL CB628592 [ AAAGACTGCGAAAACCCTCGTAGAAGAAAACCCACCGGCGGCCGATGGC GTCGCCGGCGAAGGCGCAGCGGCGGCCGGAGGGGGCCTCGGTGCTGGAGACCCTCCCCGCGCTCCCGCTCGCGATCATCATCGCCAAGGCCGGCCCCCGCTGCGCCGCCGCGCTCGCCTGCGCCAGCTCCACCCTCCGCGCCGCCGCCTCCGGCGAGGCCCTCTGGCGCCACTTCTGCTCCGACGACTTCGCCCTCGACGCCCCCCTCGCTCCCGGCGACCTCCCTCTCCCTTCCTTCAAGGATGCTTACAAAGCTTGGTTCCAATCTTTTGGGATGTACCCTTTGCCACTTGTTAAGA GGGTGAAGATCTTCTGGAGCTCATTCA GGGCATGGCTATGCGAGTA TTTCCCGGAAGGGCTGAGGACTCTAGGGGAAGGCGTTTCGGAAGCCGAGATAGCCGTCGCGGAATGTAACCTGGGCCTTGTGCTTCCTATGCCCACAAAGCTACTGTACCGTTTCTGCAACGGCCAGCTGCACATTGGCCGCGGCGAGGAGGTCTCGTACGGTGTTATGGGAGGCTATGATTATGTTCACCAGAGGTATACCGTGCGCTTGCTACCGCTCGCGCACCATGCTGTTCAGAAAAACTCAAACTACATTGTAGTTGCGA ]
[+] EMBL CB628634 [ AAAGACTGCGAAAACCCTCGTAGAAGAAAACCCACCGGCGGCCGATGGC GTCGCCGGCGAAGGCGCAGCGGCGGCCGGAGGGGGCCTCGGTGCTGGAGACCCTCCCCGCGCTCCCGCTCGCGATCATCATCGCCAAGGCCGGCCCCCGCTGCGCCGCCGCGCTCGCCTGCGCCAGCTCCACCCTCCGCGCCGCCGCCTCCGGCGAGGCCCTCTGGCGCCACTTCTGCTCCGACGACTTCGCCCTCGACGCCCCCCTCGCTCCCGGCGACCTCCCTCTCCCTTCCTTCAAGGATGCTTACAAAGCTTGGTTCCAATCTTTTGGGATGTACCCTTTGCCACTTGTTAAGA GGGTGAAGATCTTCTGGAGCTCATTCA GGGCATGGCTATGCGAGTA TTTCCCGGAAGGGCTGAGGACTCTAGGGGAAGGCGTTTCGGAAGCCGAGATAGCCGTCGCGGAATGTAACCTGGGCCTTGTGCTTCCTATGCCCACAAAGCTACTGTACCGTTTCTGCAACGGCCAGCTGCACATTGGCCGCGGCGAGGAGGTCTCGTACGGTGTTATGGGAGGCTATGATTATGTTCACCAGAGGTATACCGTGCGCTTGCTACCGCTCGCGCACCATGCTGTTCAGAAAAACTCAAACTACA ]
[+] EMBL AU163417 [ GAAAACCCACCGGCGGCCGATGGC GTCG CGGCNAAGGCGCA NGGCGGCCGGAGGGGGCCTCGGTGCTGGAGACCCTCCCCGCGCTCCCGCTCGCAATCATNATCGCCAAGGCCGGCCCCCGCTGCGCCGCCGCGTTCGCTTGCNCCANTTCCACCCTCCGCGCCGCCGCCTCCGG AAGGCCCTCTGGCGCCACTTCTGCTCCNACGACTTCGCCCTCNACGCCCCCCTCGCTCCCGGCGACCTCCCTCTCCCTTCCTTCAAGGATGCTTACAAAGCTTGGTTCCAATCTTTTGGGATGTACCCTTTGCCACTTGTTAAGAGGGGTGAAGATCTTCTGGAGCTCATTCANGGGCATGGCTATGGAAGTATTTTCCCGGAA GGCTNAGGACTCTAGGGGAAGGCG TTNGGAAGCCGAGATAG CNTCG GGAAT TAACCTGGGCtt ]
[+] EMBL CA999719 [ GCCTACAGGATGGCTTGATCAAGGTGCAGAGTTGTAAATTCCCAATGCTGGCAAGGCATATCAGTTTGTATCCAGTACAACTCCCTTACTGTTCGTCGGCAAGTATGCATGGTATCAAGGTTCGTGCCTCTGCTGTCTTTGCCCCAGAAAACTCTGCTTTCGCTGATTACCGATGCAGATATTCGTACTATTTCTCCATTCGTCTATCCCTTCCTGAAGCATTCGTTGTAGATGGCAAGTGGTATTCTTCCTTCCAGCTTCAGTCATG ]
[+] EMBL AU181985 [ GCCATGGCAAGTGTCCTCTCCTNAGGTGCGGCGAGGAGCTGTTTGTCTATGGGTGTTCCATATCGGCAGCACTGGAGCCTGGATCCGTGATGGGCAACTTGACGCTTGTCCCTTGGAGGTGTGGTCAGCCTAGAGGAAGCCCTTTTATTGCCGACATAGCTCCTTTCCCTCTGCACCCGCCTGACTACATCTTCTGAAGAATTGGAAGCTGGTCCATCAAAGCATGCATGCAGTTGAGGCTAATTCTTGCTAGAGCGCCTTGTTGGAAATTTTCCTGGATATATTTTTGTACGTGCAGCTCTCGGAATTGTTGTCTTGACAAGTGACGAAAGTCTCATGAGCTGTGAATTATATATACACACACACACAACACACTTTTCGGCAGTGACATGATGTTACTTTTCGGCAGTGACATGATGTTCCGTTTGTTAAaaa ]
[+] EMBL BQ906219 [ CCTCTCCTGAGGTGCGGCGAGGAGCTGTTTGTCTATGGGTGTTCCATATCAGCAGCACTGGAGCCTGGATCCGTCATGGGCAACTTGACGCTTGTTCCTTGGAGGTGTGGTCAGCCTAGAGGAAGCCCTTTTATTGCCGACATAGCTCCTTTCCCTCTACACCCGCCTGACTACATCTTCTGAAGAATTGGAAGCTGGTTCATC AAGCATGCATGCGGTTGATGCTAATTCTTGTTAGAGCGCCTTTTTGGAAATTTTCCTGGATATATTTCTGTACATGCAGCTCTCGGAATTATTGTCTTGACAAGTGACGAAAGTCTCATGAGCTGTGAATTATATAaaaaaaaaa ]
consensusID : consensus_13301#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1237 fasta sequence
[GGGAAAAAAAGAAAGACTGCGAAAACCCTCGTAGAAGAAAACCCACCGGCGGCCGATGGCGTCGCCGGCGAAGGCGCAGCGGCGGCCGGAGGGGGCCTCGGTGCTGGAGACCCTCCCCGCGCTCCCGCTCGCGATCATCATCGCCAAGGCCGGCCCCCGCTGCGCCGCCGCGCTCGCCTGCGCCAGCTCCACCCTCCGCGCCGCCGCCTCCGGCGAGGCCCTCTGGCGCCACTTCTGCTCCGACGACTTCGCCCTCGACGCCCCCCTCGCTCCCGGCGACCTCCCTCTCCCTTCTTTCAAGGATGCTTACAAAGCTTGGTTCCAATCTTTTGGGATGTACCCTTTGCCACTTGTTAAGAGGGTGAAGATCTTCTGGAGCTCATTCAGGGCATGGCTATGCGAGTATTTCCCGGAAGGGCTGAGGACTCTAGGGGAAGGCGTTTCGGAAGCCGAGATAGCCGTCGCGGAATGTAACCTGGGCCTTGTGCTTCCTATGCCCACTAAGCTACTGTACCGTTTCTGCAACGGCCAGCTGCACATTGGCCGCGGCGAGGAGGTCTCGTACGGCGTTATGGGAGGCTATGATTATGTTCACCAGAGGTATACCGTGCGCTTGCTACCGCTCGCGCACCATGCTGTTCAGAAAAACTCAAACTACATTGTAGTTGCGACGAGTTGTTTTGGGGAGAAGATATTTCTTCTTGATTGTGCGAGTGGCCGTCTTTATGTCGGCACCAAGTATTGGAATGAAGAAAGAGAAATCATGGCATGCGTGCCAAAAGCGACAATAAGGCTCGCTGTGGATGATGATCATGGCATGCCTCAAGATGGATTTCTGCTGTGGTTGGAAGAGCACCTTAGTCGCCTACAGGATGGCTTGATCAAGGTGCAGAGTTGTAAATTCCCAATGCTGGCAAGGCATATCAGTTTGTATCCAGTACAACTCCCTTACTGTTCGTCGGCAAGTATGCATGGTATCAAGGTTAGTAAATTGGCTTTTCTGTTAGTTTATTGCCATGCTTAATATGCTGATTGCATTGCGAGGGTAATTGAATCTATTTTGAAGCACATAGCTAGCCTACTGAAAGTTTTTTTGCTGTTTTATATTTAAAGATTAGATTTTGCTGTTTTATGTTTAATGATGAGCGTCATCGATGTATGATGATGGGGGCTCTGACCCCTGTTCTTCTCCCATAAAAGCATTTTGAAATCTAAAAGTTTGGCTGGTACTGAGTGC]
[+] EMBL AK110777 [GGGAAAAAAAGAAAGACTGCGAAAACCCTCGTAGAAGAAAACCCACCGGCGGCCGATGGCGTCGCCGGCGAAGGCGCAGCGGCGGCCGGAGGGGGCCTCGGTGCTGGAGACCCTCCCCGCGCTCCCGCTCGCGATCATCATCGCCAAGGCCGGCCCCCGCTGCGCCGCCGCGCTCGCCTGCGCCAGCTCCACCCTCCGCGCCGCCGCCTCCGGCGAGGCCCTCTGGCGCCACTTCTGCTCCGACGACTTCGCCCTCGACGCCCCCCTCGCTCCCGGCGACCTCCCTCTCCCTTCTTTCAAGGATGCTTACAAAGCTTGGTTCCAATCTTTTGGGATGTACCCTTTGCCACTTGTTAAGAGGGTGAAGATCTTCTGGAGCTCATTCAGGGCATGGCTATGCGAGTATTTCCCGGAAGGGCTGAGGACTCTAGGGGAAGGCGTTTCGGAAGCCGAGATAGCCGTCGCGGAATGTAACCTGGGCCTTGTGCTTCCTATGCCCACTAAGCTACTGTACCGTTTCTGCAACGGCCAGCTGCACATTGGCCGCGGCGAGGAGGTCTCGTACGGCGTTATGGGAGGCTATGATTATGTTCACCAGAGGTATACCGTGCGCTTGCTACCGCTCGCGCACCATGCTGTTCAGAAAAACTCAAACTACATTGTAGTTGCGACGAGTTGTTTTGGGGAGAAGATATTTCTTCTTGATTGTGCGAGTGGCCGTCTTTATGTCGGCACCAAGTATTGGAATGAAGAAAGAGAAATCATGGCATGCGTGCCAAAAGCGACAATAAGGCTCGCTGTGGATGATGATCATGGCATGCCTCAAGATGGATTTCTGCTGTGGTTGGAAGAGCACCTTAGTCGCCTACAGGATGGCTTGATCAAGGTGCAGAGTTGTAAATTCCCAATGCTGGCAAGGCATATCAGTTTGTATCCAGTACAACTCCCTTACTGTTCGTCGGCAAGTATGCATGGTATCAAGGTTAGTAAATTGGCTTTTCTGTTAGTTTATTGCCATGCTTAATATGCTGATTGCATTGCGAGGGTAATTGAATCTATTTTGAAGCACATAGCTAGCCTACTGAAAGTTTTTTTGCTGTTTTATATTTAAAGATTAGATTTTGCTGTTTTATGTTTAATGATGAGCGTCATCGATGTATGATGATGGGGGCTCTGACCCCTGTTCTTCTCCCATAAAAGCATTTTGAAATCTAAAAGTTTGGCTGGTACTGAGTGC]
consensusID : consensus_13301#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 570 fasta sequence
[ACCGATCCAGATATTCGTACTATTTCTCCATTCGTCTGTCCCTTGCTGAACATTCTTGTAGATGGCCAAGTGGTATTCTTCACTTCCAGCTTCAAGTCATCCCACTACACTATTCAAGATTGGAGATGAAGTCCTCCCATTACACATGCAACTATGGCAGCCATGGCAAGTGTCCTCTCCTGAGGTGCGGCGAGGAGCTGTTTGTCTATGGGTGTTCCATATCAGCAGCACTGGAGCCTGGATCCAGTCATGGGCAACTTGACAGCTTGTTCCTTGGAGGTTTGGTCACCTAGAGGAAGCCACTTTTATTCCGACATAGCTCCATTTCCCTCTACACCCGCACTGACTACATCTTCTGAAGAATTGGAAGCTGGTTCATCAAACATGCATCCAGCTTGATGCTAATTCTTGTTAGAGCCCTTTTTGGAAATTTTCCTGGATATATTTCTGGTACCATCAGCTCTCGAATATTTTCTACAATGACGAAATTCTCATGACTTGAATATATACACACACACTACACACTTAGCCATACATGATTTCCTTTCTAATCGGCTTGCTTGAAAAAAA]
[+] EMBL BI811672 [ACCGATCCAGATATTCGTACTATTTCTCCATTCGTCTGTCCCTTGCTGAACATTCTTGTAGATGGCCAAGTGGTATTCTTCACTTCCAGCTTCAAGTCATCCCACTACACTATTCAAGATTGGAGATGAAGTCCTCCCATTACACATGCAACTATGGCAGCCATGGCAAGTGTCCTCTCCTGAGGTGCGGCGAGGAGCTGTTTGTCTATGGGTGTTCCATATCAGCAGCACTGGAGCCTGGATCCAGTCATGGGCAACTTGACAGCTTGTTCCTTGGAGGTTTGGTCACCTAGAGGAAGCCACTTTTATTCCGACATAGCTCCATTTCCCTCTACACCCGCACTGACTACATCTTCTGAAGAATTGGAAGCTGGTTCATCAAACATGCATCCAGCTTGATGCTAATTCTTGTTAGAGCCCTTTTTGGAAATTTTCCTGGATATATTTCTGGTACCATCAGCTCTCGAATATTTTCTACAATGACGAAATTCTCATGACTTGAATATATACACACACACTACACACTTAGCCATACATGATTTCCTTTCTAATCGGCTTGCTTGAAAAAAA]
consensusID : consensus_13301#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 550 fasta sequence
[TCCCTGAACCATTCGTTGTAGATGCCAATGTATTCTCCCTTCCAGCTTCAGCTCATCCACTACACTATTCAGATTGGAGATGAAGTCCTCCCTTACACATGGCAACTATGCGCCCATGCAAGTGTCCTCTCCTGAGGTGCGGCGAGGAGCTGTTTGTCTATGGGTGTTCCATATCGCAGCACTGGAGCCTGGATCCGTGATGGGCAACTTGACGCTTGTTCCTTGGAGGTGTGGTCAGCCTAGAGGAAGCCCTTTTATTGCCGACATAGCTCCTTTCCCTCTGCACCCGCCTGACTACATCTTCTGAAGAATTGGAAGCTGGTCCATCCAAGCATGCATGCAGTTGAGGCTAATTCTTGCTAGAGCGCCCTTGTTGGAAATTTTCCTGGATATATTTTTGTACGTGCAGCTCTCGGAATTGTTGTCTTGACAAGTGACGAAAGTCTCATGAGCTGTGAATTATATATACACACACACACACACACTTTTCGCAGTGACATGATGTTCCGTTTGTTAATCCGGCTTGCTTGCTTCTGATAGCTTGACAAAA]
[+] EMBL BI801948 [TCCCTGAACCATTCGTTGTAGATGCCAATGTATTCTCCCTTCCAGCTTCAGCTCATCCACTACACTATTCAGATTGGAGATGAAGTCCTCCCTTACACATGGCAACTATGCGCCCATGCAAGTGTCCTCTCCTGAGGTGCGGCGAGGAGCTGTTTGTCTATGGGTGTTCCATATCGCAGCACTGGAGCCTGGATCCGTGATGGGCAACTTGACGCTTGTTCCTTGGAGGTGTGGTCAGCCTAGAGGAAGCCCTTTTATTGCCGACATAGCTCCTTTCCCTCTGCACCCGCCTGACTACATCTTCTGAAGAATTGGAAGCTGGTCCATCCAAGCATGCATGCAGTTGAGGCTAATTCTTGCTAGAGCGCCCTTGTTGGAAATTTTCCTGGATATATTTTTGTACGTGCAGCTCTCGGAATTGTTGTCTTGACAAGTGACGAAAGTCTCATGAGCTGTGAATTATATATACACACACACACACACACTTTTCGCAGTGACATGATGTTCCGTTTGTTAATCCGGCTTGCTTGCTTCTGATAGCTTGACAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13301#2 ------------------------------------------------------------
consensus_13301#3 ------------------------------------------------------------
consensus_13301#0 AAAAAAAAAAGAAAAGAGGAAGAAGGGGAAAAAAAGAAAGACTGCGAAAACCCTCGTAGA 60
consensus_13301#1 ------------------------------------------------------------
consensus_13301#2 ------------------------------------------------------------
consensus_13301#3 ------------------------------------------------------------
consensus_13301#0 AGAAAACCCACCGGCGGCCGATGGCGTCGCCGGCGAAGGCGCAGCGGCGGCCGGAGGGGG 120
consensus_13301#1 ------------------------------------------------------------
consensus_13301#2 ------------------------------------------------------------
consensus_13301#3 ------------------------------------------------------------
consensus_13301#0 CCTCGGTGCTGGAGACCCTCCCCGCGCTCCCGCTCGCGATCATCATCGCCAAGGCCGGCC 180
consensus_13301#1 ------------------------------------------------------------
consensus_13301#2 ------------------------------------------------------------
consensus_13301#3 ------------------------------------------------------------
consensus_13301#0 CCCGCTGCGCCGCCGCGCTCGCCTGCGCCAGCTCCACCCTCCGCGCCGCCGCCTCCGGCG 240
consensus_13301#1 ------------------------------------------------------------
consensus_13301#2 ------------------------------------------------------------
consensus_13301#3 ------------------------------------------------------------
consensus_13301#0 AGGCCCTCTGGCGCCACTTCTGCTCCGACGACTTCGCCCTCGACGCCCCCCTCGCTCCCG 300
consensus_13301#1 ------------------------------------------------------------
consensus_13301#2 ------------------------------------------------------------
consensus_13301#3 ------------------------------------------------------------
consensus_13301#0 GCGACCTCCCTCTCCCTTCCTTCAAGGATGCTTACAAAGCTTGGTTCCAATCTTTTGGGA 360
consensus_13301#1 ------------------------------------------------------------
consensus_13301#2 ------------------------------------------------------------
consensus_13301#3 ------------------------------------------------------------
consensus_13301#0 TGTACCCTTTGCCACTTGTTAAGAGGGTGAAGATCTTCTGGAGCTCATTCAGGGCATGGC 420
consensus_13301#1 ------------------------------------------------------------
consensus_13301#2 ------------------------------------------------------------
consensus_13301#3 ------------------------------------------------------------
consensus_13301#0 TATGCGAGTATTTCCCGGAAGGGCTGAGGACTCTAGGGGAAGGCGTTTCGGAAGCCGAGA 480
consensus_13301#1 ------------------------------------------------------------
consensus_13301#2 ------------------------------------------------------------
consensus_13301#3 ------------------------------------------------------------
consensus_13301#0 TAGCCGTCGCGGAATGTAACCTGGGCCTTGTGCTTCCTATGCCCACTAAGCTACTGTACC 540
consensus_13301#1 ------------------------------------------------------------
consensus_13301#2 ------------------------------------------------------------
consensus_13301#3 ------------------------------------------------------------
consensus_13301#0 GTTTCTGCAACGGCCAGCTGCACATTGGCCGCGGCGAGGAGGTCTCGTACGGCGTTATGG 600
consensus_13301#1 ------------------------------------------------------------
consensus_13301#2 ------------------------------------------------------------
consensus_13301#3 ------------------------------------------------------------
consensus_13301#0 GAGGCTATGATTATGTTCACCAGAGGTATACCGTGCGCTTGCTACCGCTCGCGCACCATG 660
consensus_13301#1 ------------------------------------------------------------
consensus_13301#2 ------------------------------------------------------------
consensus_13301#3 ------------------------------------------------------------
consensus_13301#0 CTGTTCAGAAAAACTCAAACTACATTGTAGTTGCGACGAGTTGTTTTGGGGAGAAGATAT 720
consensus_13301#1 -------------GGGAAAAAAAGAAAGACTGCGAAAACCCTCGTAGAAGAAAACCCACC 47
consensus_13301#2 ------------------------------------------------------------
consensus_13301#3 ------------------------------------------------------------
consensus_13301#0 TTCTTCTTGATTGTGCGAGTGGCCGTCTTTATGTCGGCACCAAGTATTGGAATGAAGAAA 780
consensus_13301#1 GGCGGCCGATGGCGTCGCCGGCGAAGGCGCAGCGGCGGCCGGAGGGGGCCTCGGTGCTGG 107
consensus_13301#2 ------------------------------------------------------------
consensus_13301#3 ------------------------------------------------------------
consensus_13301#0 GAGAAATCATGGCATGCGTGCCAAAAGCGACAATAAGGCTCGCTGTGGATGATGATCATG 840
consensus_13301#1 AGACCCTCCCCGCGCTCCCGCTCGCGATCATCATCGCCAAGGCCGGCCCCCGCTGCGCCG 167
consensus_13301#2 ------------------------------------------------------------
consensus_13301#3 ------------------------------------------------------------
consensus_13301#0 GCATGCCTCAAGATGGATTTCTGCTGTGGTTGGAAGAGCACCTTAGTCGCCTACAGGATG 900
consensus_13301#1 CCGCGCTCGCCTGCGCCAGCTCCACCCTCCGCGCCGCCGCCTCCGGCGAGGCCCTCTGGC 227
consensus_13301#2 ------------------------------------------------------------
consensus_13301#3 ------------------------------------------------------------
consensus_13301#0 GCTTGATCAAGGTGCAGAGTTGTAAATTCCCAATGCTGGCAAGGCATATCAGTTTGTATC 960
consensus_13301#1 GCCACTTCTGCTCCGACGACTTCGCCCTCGACGCCCCCCTCGCTCCCGGCGACCTCCCTC 287
consensus_13301#2 ------------------------------------------------------------
consensus_13301#3 ------------------------------------------------------------
consensus_13301#0 CAGTACAACTCCCTTACTGTTCGTCGGCAAGTATGCATGGTATCAAGGTTCGTGCCTCTG 1020
consensus_13301#1 TCCCTTCTTTCAAGGATGCTTACAAAGCTTGGTTCCAATCTTTTGGGATGTACCCTTTGC 347
consensus_13301#2 ------------------------------------ACCGATCCAGATATTCGTACTATT 24
consensus_13301#3 ------------------------------------------------------------
consensus_13301#0 CTGTCTTTGCCCCAGAAAACTCTGCTTTCGCTGATTACCGATGCAGATATTCGTACTATT 1080
consensus_13301#1 CACTTGTTAAGAGGGTGAAGATCTTCTGGAGCTCATTCAGGGCATGGCTATGCGAGTATT 407
consensus_13301#2 TCTCCATTCGTCTGTCCCTTGCTGAAC-ATTC-TTGTAGATGGCCAAGTGGTATTCTTCA 82
consensus_13301#3 ------------------TCCCTGAACCATTCGTTGTAGATG-CCAAT--GTATTCTCC- 38
consensus_13301#0 TCTCCATTCGTCTATCCCTTCCTGAAGCATTCGTTGTAGATG-GCAAGTGGTATTCTTC- 1138
consensus_13301#1 TCCCGGAAGGGCTGAGGACTCTAGGGGAAGGCGTTTCGGAAGCCGAGATAGCCGTCGCGG 467
* * * ** ** * * * **
consensus_13301#2 CTTCCAGCTTCAAGTCATCCCACTACACTATTCAAGATTGGAGATGAAGTCCTCCCATTA 142
consensus_13301#3 CTTCCAGCTTCAGCTCATCC-ACTACACTATTCA-GATTGGAGATGAAGTCCTCCC-TTA 95
consensus_13301#0 CTTCCAGCTTCAG-TCATGCCACTACACTATTCA-GATTGGAGATGAAGTCCTCCC-TTA 1195
consensus_13301#1 AATGTAACCTGGG--CCTTGTGCTTC-CTATGCCCACTAAGCTACTGTACCGTTTC--TG 522
* * * * * * ** * **** * * * * * * * *
consensus_13301#2 CACATG-CAACT--ATGGCAGCCATGGCAAGTGTCCTCTCCTGAGGTGCGGCGAGGAGCT 199
consensus_13301#3 CACATGGCAACT--ATG-CGCCCATG-CAAGTGTCCTCTCCTGAGGTGCGGCGAGGAGCT 151
consensus_13301#0 CACATG-CAACT--ATGGCGGCCATGGCAAGTGTCCTCTCCTGAGGTGCGGCGAGGAGCT 1252
consensus_13301#1 CAACGGCCAGCTGCACATTGGCCGCGGCGAG-GAGGTCTCGTACGGCGTTATGGGAGGCT 581
** * ** ** * ** * * ** * **** * ** * * * ***
consensus_13301#2 GT-------TTGTCTATGGGTGTTCCATA---TCAGCAGCACTGGAGCCTGGATCCAGTC 249
consensus_13301#3 GT-------TTGTCTATGGGTGTTCCATA---TC-GCAGCACTGGAGCCTGGATCC-GTG 199
consensus_13301#0 GT-------TTGTCTATGGGTGTTCCATA---TCGGCAGCACTGGAGCCTGGATCC-GTG 1301
consensus_13301#1 ATGATTATGTTCACCAGAGGTATACCGTGCGCTTGCTACCGCTCGCGCACCATGCTGTTC 641
* ** * * *** * ** * * * * ** * ** * *
consensus_13301#2 ATGGGCAACTTGACAGC-TTGTTCCTTGGAGGTTTGGTCA-CCTAGAGGAAGCCACTTTT 307
consensus_13301#3 ATGGGCAACTTGAC-GC-TTGTTCCTTGGAGGTGTGGTCAGCCTAGAGGAAGCCCTTTTA 257
consensus_13301#0 ATGGGCAACTTGAC-GC-TTGTCCCTTGGAGGTGTGGTCAGCCTAGAGGAAGCCCTTTTA 1359
consensus_13301#1 AGAAAAACTCAAACTACATTGTAGTTGCGACGAGTTGTT--TTGGGGAGAAGATATTTCT 699
* * ** * **** * ** * * ** * **** **
consensus_13301#2 ATTCCGACATAGCTCCATTTCCCTCTACACCCGCACTGACTACATCTTCTGAAGAATTGG 367
consensus_13301#3 TTGCCGACATAGCTCC-TTTCCCTCTGCACCCGC-CTGACTACATCTTCTGAAGAATTGG 315
consensus_13301#0 TTGCCGACATAGCTCC-TTTCCCTCTGCACCCGC-CTGACTACATCTTCTGAAGAATTGG 1417
consensus_13301#1 TCTTGATTGTGCGAGTGGCCGTCTTTATGTCGGCACCAAGTAT-TGGAATGAAGAAAGAG 758
* ** * * ** * * ** * ******* *
consensus_13301#2 AAGCTGGTTCATC-AAACATGCATCCAGCTTGATGCTAATTCTTGTTAGAGC--CCTTTT 424
consensus_13301#3 AAGCTGGTCCATCCAAGCATGCATGCAG-TTGAGGCTAATTCTTGCTAGAGCGCCCTTGT 374
consensus_13301#0 AAGCTGGTCCATCAAAGCATGCATGCAG-TTGAGGCTAATTCTTGCTAGAGCG-CCTTGT 1475
consensus_13301#1 AAATCATGGCAT----GCGTGCCAAAAG--CGACAATAAGGCTCGCTGTGGATGATGATC 812
** *** * *** ** ** *** ** * * *
consensus_13301#2 TGGAAATTTTCCTGGATATATTTCTGGTACCATCAGCTCTCGAA--TATTTTCT--ACAA 480
consensus_13301#3 TGGAAATTTTCCTGGATATATTTTTG-TACGTGCAGCTCTCGGAATTGTTGTCTTGACAA 433
consensus_13301#0 TGGAAATTTTCCTGGATATATTTTTG-TACGTGCAGCTCTCGGAATTGTTGTCTTGACAA 1534
consensus_13301#1 ATGGCATGCCTCAAGATGGATTTCTGCTGTGGTTGGAAGAGCACCTTAGTCGCCTACAGG 872
* ** * *** **** ** * * * * *
consensus_13301#2 -TGACGAAATTCTCATG---ACTTGA-----ATATATACACACA---CAC-----TACAC 523
consensus_13301#3 GTGACGAAAGTCTCATG---AGCTGTGAATTATATATACACACA---CACA-CA-CACAC 485
consensus_13301#0 GTGACGAAAGTCTCATG---AGCTGTGAATTATATATACACACA---CACA-CAACACAC 1587
consensus_13301#1 ATGGCTTGATCAAGGTGCAGAGTTGTAAATTCCCAATGCTGGCAAGGCATATCAGTTTGT 932
** * * ** * ** ** * ** **
consensus_13301#2 ACTTAG-------------------------CCAT--ACATGATTTCC---TTTCTAATC 553
consensus_13301#3 TTTTCG-------------------------CAGTG-ACATGATGTTCCGTTTGTTAATC 519
consensus_13301#0 TTTTCGGCAGTGACATGATGTTACTTTTCGGCAGTG-ACATGATGTTCCGTTTGTTAATG 1646
consensus_13301#1 ATCCAGTACAACTCCCTTACTGTTCGTCGGCAAGTATGCATGGTATCAAGGTTAGTAAAT 992
* * **** * * ** ***
consensus_13301#2 -GGCTTGCTTGAAAAAA-A----------------------------------------- 570
consensus_13301#3 CGGCTTGCTTGCTTCTG-ATAGCTTGACAAAA---------------------------- 550
consensus_13301#0 CGGCTTGCTTGCTTCT-------------------------------------------- 1662
consensus_13301#1 TGGCTTTTCTGTTAGTTTATTGCCATGCTTAATATGCTGATTGCATTGCGAGGGTAATTG 1052
***** **
consensus_13301#2 ------------------------------------------------------------
consensus_13301#3 ------------------------------------------------------------
consensus_13301#0 ------------------------------------------------------------
consensus_13301#1 AATCTATTTTGAAGCACATAGCTAGCCTACTGAAAGTTTTTTTGCTGTTTTATATTTAAA 1112
consensus_13301#2 ------------------------------------------------------------
consensus_13301#3 ------------------------------------------------------------
consensus_13301#0 ------------------------------------------------------------
consensus_13301#1 GATTAGATTTTGCTGTTTTATGTTTAATGATGAGCGTCATCGATGTATGATGATGGGGGC 1172
consensus_13301#2 ------------------------------------------------------------
consensus_13301#3 ------------------------------------------------------------
consensus_13301#0 ------------------------------------------------------------
consensus_13301#1 TCTGACCCCTGTTCTTCTCCCATAAAAGCATTTTGAAATCTAAAAGTTTGGCTGGTACTG 1232
consensus_13301#2 -----
consensus_13301#3 -----
consensus_13301#0 -----
consensus_13301#1 AGTGC 1237
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||