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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13308#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 600 fasta sequence
[ACATTCGATCACATTCGGCTAGTAACCAAGCAGTTCTTACGCTAGAGCTAGCTCGAGCAATGGTGAAGTGGGCAGCTGTGATGGAGATGCTTCTGCTGACGGCAGCAGCGACGGCGGTAGCGGTGGTGGCGGCGCAGTGTGACCCTGAGCAGCTATCGGCGTGCGTGA-CCCGATCTTCTACGGGACGGCGCCATCAGAGTCGTGCTGCTCCAACCTACGCGCACAGCAGAAGGAGGGGTGCCTCTGCC-AGTACGCGAAAGACCCGACGTACGCGTCCTACGTCAACAACACCAACGCACGCAAGACCATCGCCGCCTGCGGCA-TCCCCATTCCCAGCTGC-TAGGCTCGATCT-CCCGCCGCCGCCGGCCATGATGCGTACGT-GGCATATATACGCGT-GGTGTGTACGTGCGCTTGAAGAAAAGGGCGTGAGTTTGAATTAATAATTATCCAGTACGCGATGTTTGATCGATCGATGATGTGCCTTTTTTTTTTGGTATTTGAAGTTTGAACTCTGAATTTCATCTTGTGTTAATTGGAGTATGATAGCTGTGTGTACATTCGTTTTGGAGGTAGAGGCCGGTTTAATTAAAAAAAAAAAAA]
[+] EMBL AK062529 [ACATTCGATCACATTCGGCTAGTAACCAAGCAGTTCTTACGCTAGAGCTAGCTCGAGCAATGGTGAAGTGGGCAGCTGTGATGGAGATGCTTCTGCTGACGGCAGCAGCGACGGCGGTAGCGGTGGTGGCGGCGCAGTGTGACCCTGAGCAGCTATCGGCGTGCGTGAGCCCGATCTTCTACGGGACGGCGCCATCAGAGTCGTGCTGCTCCAACCTACGCGCACAGCAGAAGGAGGGGTGCCTCTGCC AGTACGCGAAAGACCCGACGTACGCGTCCTACGTCAACAACACCAACGCACGCAAGACCATCGCCGCCTGCGGCA TCCCCATTCCCAGCTGC TAGGCTCGATCT CCCGCCGCCGCCGGCCATGATGCGTACGT GGCATATATACGCGT GGTGTGTACGTGCGCTTGAAGAAAAGGGCGTGAGTTTGAATTAATAATTATCCAGTACGCGATGTTTGATCGATCGATGATGTGCCTTTTTTTTTTGGTATTTGAAGTTTGAACTCTGAATTTCATCTTGTGTTAATTGGAGTATGATAGCTGTGTGTACATTCG ]
[+] EMBL AU066167 [ ATTCGATCACATTCGGCTAGTAACCAAGCAGTTCTTACGCTAGAGCTAGCTCGAGCAATGGTGAAGTGGGCAGCTGTGATGGAGATGCTTCTGCTGACGGCAGCAGCGACGGCGGTAGCGGTGGTGGCGGCGCAGTGTGACCCTGAGCAGCTATCGGCGTGCGTGA CCCGATCTTCTACGGGACGGCGCCATCAGAGTCGTGCTGCTCCAACCTACGCGCACAGCAGAAGGAGGGGTGCCTCTGCC AGTACGCGAAAGACCCGACGTACGCGTCCTACGTCAACAACACCAACGCACGCAAGACCATGGCGGCCTNCGGNATTCCCCATTCCCAACTTCTTAGGnt ]
[+] EMBL AU066346 [ ATTCGATCACATTCGGCTAGTAACCAAGCAGTTCTTACGCTAGAGCTAGCTCGAGCAATGGTGAAGTGGGCAGCTGTGATGGAGATGCTTCTGCTGACGGCAGCAGCGACGGCGGTAGCGGTGGTGGCGGCGCAGTGTGACCCTGAGCAGCTATCGGCGTGCGTAA CCCGATCTTCTACGGGACGGCGCCATCAGAGTCGTGCTGCTCCAACCTACGCGCACAGCAGAAGGAGGGGTGCCTCTGCC AGTACGCGAAAGACCCGACGTACGCGTCCTACGTCAACAACACCAACGCACGAAAGA ]
[+] EMBL AU095292 [ TTCGGCTAGTAACCAAGCATTTCTTACGCTAGAGCTAGCTCGAGCAATGGTGAAGTGGGCAGCTGTGATGGAGATGCTTCTGCTGACGGCAGCAGCGACGGCGGTA CGGTGGTGGCGGCGCAGTGTGACCCTGAGCAGCTATCGGCGTGCGTGA CCCGATCTTCTACGGGACGGCGCCATCAGAGTCGTGCTGCTCCAACCTACGCGCACAGCAGAAGGAGGGGTGCCTCTGCC AGTACGCGAAAGACCCGACGTACGCGTCCTACGTCAACAACACCAACGCACGCAAGACCATCGCCGCCTGCGGCA TCCCCATTCCCAGCTGC TAGGCTCGATCT CCCGCCGCCGCCGGCCATGATGCGTACGT GGCATATATACGCGT GGTGTGTACGTGCGCTTGAAGAAAAAGGCGTGAG TTGAA TAAT ATTATCCAGTACGCGt ]
[+] EMBL AU095295 [ TCGGCTAGTAACCAAGCATTTCTTACGCTAGAGCTAGCTCGAGCAATGGTGAAGTGGGCAGCTGTGATGGAGATGCTTCTGCTGACGGCAGCAGCGACGGCGGTA CGGTGGTGGCGGCGCAGTGTGACCCTGAGCAGCTATCGGCGTGCGTGA CCCGATCTTCTACGGGACGGCGCCATCAGAGTCGTGCTGCTCCAACCTACGCGCACAGCAGAAGGAGGGGTGCCTCTGCC AGTACGCGAAAGACCCGACGTACGCGTCCTACGTCAACAACACCAACGCACGCAAGACCATCGCCGCCTGCGGGA TCCCCATTCCCAGCTGC TAGGCTCGATCTCCCCGCCGCCGCCGGCCATGATGCGTACGT GGCATATATACGCGTGGGTGTGTACGTGCGCTTGAAGAAAA GGCGT ANTTTG ATTAATAATTATCCA TACGCG ]
[+] EMBL C74648 [ TCGGCTAGTAACCAAGCAGTTCTTACGCTAGAGCTAGCTCGAGCAATGGTGAAGTGGGCAGCTGTGATGGAGATGCTTCTGCTGACGGCAGCAGCGACGGCGGTAGCGGTGGTGGCGGCGCAGTGTGACCCTGAGCAGCTATCGGCGTGCGTGA CCCGATCTTCTACGGGACGGCGCCATCAGAGTCGTGCTGCTCCAACCTACGCGCACAGCAGAAGGAGGGGTGCCTCTGCC AGTACGCAAAAGACCCGACGTACGCGTCCTACGTCAACAACACCAACGCACGCAAGACCATNGCCGCCTGNGG A TCCCCAT ]
[+] EMBL AU101533 [ TCGGCTAGTAACCAAGCATTTCTTACGCTAGAGCTAGCTCGAGCAATGGTGAAGTGGGCAGCTGTGATGGAGATGCTTCTGCTGACGGCAGCAGCGACGGCGGTAGCGGTGGTGGCGGCGCAGTGTGACCCTGAGCAGCTATCGGCGTGCGTGAGCCCGATCTTCTACGGGACGGCGCCATCAGAGTCGTGCTGCTCCAACCTACGCGCACAGCAGAAGGAGGGGTGCCTCTGCC AGTACGCGAAAGACCCGACGTACGCGTCCTACGTCAACAACACCAACGCACGCAAGACCATCGCCGCCTGCGGCA TCCCCATTCCCAGCTGC TAGGCTCGATCT CCCGCAGCCGCCGGCCATGATGCGTACGTGGGCATATATACGCGT GGTGTGTACGTGCGCTTGAAGAAAAGGGCGTGAGTTTGAATTAATAATTATCCAGTACG ]
[+] EMBL AU101534 [ cCGGCGTGCGTGAGCCCGATCTTCTACGGGACGGCGCCATCAGAGTCGTGCTGCTCCAACCTACGCGCACAGCAGAAGGAGGGGTGCCTCTGCC AGTACGCGAAAGACCCGACGTACGCGTCCTACGTCAACAACACCAACGCACGCAAGACCATCGNC CCTGCGGCA TCCCCATTCCCAGCTGC TAGGCTCGATCT CCCGCCGCCGCCGGCCATGATGCGTACGT GGCATATATACGCGT GGTGTGTACGTGCGCTTGAAGAAAAGGGCGTGAGTTTGAATTAATAATTATCCAGTACGCGATGTTTGATCGATCGATGATGTGCCTTTTTTTTTTGGTATTTGAAGTTTGAACTCTGAATTTCATCTTGTGTTAATTGGAGTATGATAGCTGTGTGTACATTCGTTTTGGAGGTAGAGGCCGGTTTAATTAAAAAAAAAAAAA]
[+] EMBL AU031210 [ cGCCTCTGCCNAGTACGCGAAAGACCCGACGTACGCGTCCTACGTCAACAACACCAACGCACGCAAGACCATCNTCCCCTGCGGCA TCCCCATTCCCAGCTGC TAGGCTCGATCT CCCGCCGCCGCCGGCCATGATGCGTACGT GGCATATATACGCNT GGTGTGTACGTGCGCTTGAAGAAAAGGGCGTGAGTTTGAATTAATAATTATCCAGTACGCGATGTTTGATCGATCGATGATGTGCCTTTTTTTTTTGGTATTTGAAGTTTGAACTCTGAATTTCATCTTGTGTTAATTGGAGTATGATAGCTGTGTGTACATTCGTTTTGGAGGTAGAGGCCGGTTTAATTAAAAAAAAAAAAA]
[+] EMBL AU031205 [ CA TCCCCATTCCCAGCTGC TAGGNTCGATCT CCCGCCGCCGCCGGCCATGATGCGTACGT GGCATATATACGCGT GGTGTGTACGTGCGCTTGAAGAAAAGGGCGTGAGTTTGAATTAATAATTATCCANTACGCGATGTTTGATCGATCGATGATGTGCCTTTTTTTTTTGGTATTTGAAGTTTGAACTCTGAATTTCATCTTGTGTTAATTGGAGTATGATAGCTGTGTGTACATTCGTTTTGGAGGTAGAGGCCGGTTTAATTAAAAAAAAAAAAA]
consensusID : consensus_13308#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 466 fasta sequence
[CGATCACATTCGATCACATTCGGCTAGTAACCAAGCGGCGGTTCTTGCGCTAGCTAGCTCGAGCAATGGCGAAGTGGGCGGCTGCGATGGAGATGCTTCTGCTGGTGGTGGTGACCCCGGGCTGCTGTCGCCATGCGCGGCCCCGATCTTCTTCGGGACGGCGCCGTCGGCGTCGTGCTGCTCTAGCCTGAAAGCACAGCAGGGGTGCTTCTGCCAGTACGCGAAAGACCCGACGTACGCGTCCTACATCAACAGCACCAACGCACGCAAGATGATCGCCGCCTGCGGCATCCCCTTTCCCAACTGCAGCTAGGCTCCGTCGCCGCCGTTCACCGGTGCGGGCCATGATGTGTGGCAACATATATAAATATATGGTGTACTGCGTGCTTGAATAAAATAAAGGACAATGTGTGGAAACATATATAAATATATGGTGTACTGTGTATTTGAATAATATAAAGGATGT]
[+] EMBL AK063117 [CGATCACATTCGATCACATTCGGCTAGTAACCAAGCGGCGGTTCTTGCGCTAGCTAGCTCGAGCAATGGCGAAGTGGGCGGCTGCGATGGAGATGCTTCTGCTGGTGGTGGTGACCCCGGGCTGCTGTCGCCATGCGCGGCCCCGATCTTCTTCGGGACGGCGCCGTCGGCGTCGTGCTGCTCTAGCCTGAAAGCACAGCAGGGGTGCTTCTGCCAGTACGCGAAAGACCCGACGTACGCGTCCTACATCAACAGCACCAACGCACGCAAGATGATCGCCGCCTGCGGCATCCCCTTTCCCAACTGCAGCTAGGCTCCGTCGCCGCCGTTCACCGGTGCGGGCCATGATGTGTGGCAACATATATAAATATATGGTGTACTGCGTGCTTGAATAAAATAAAGGACAATGTGTGGAAACATATATAAATATATGGTGTACTGTGTATTTGAATAATATAAAGGATGT]
consensusID : consensus_13308#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 410 fasta sequence
[TGACCCTGAGCAGCTATCGGCGTGCGTGAGCCCGATCTTCTACGGACGGCGCCATCAGAGTCGTGCTGCTCCAACTTACGCGCACAGCAGAAGGAGGGGTGCCTCTGCCAGTACGCGAAAGACCCGACGTACGCGTCCTACGTCAACAACACCAACGCACGCAAGACCATCGCCGTGCGGCATCCCCATTCCCAGCTGCTAGGCTCGATCTCCCGCCGCCGCCGGCCATGATGCGTACGTGGCATATATACGCGTGGTGTGTACGTGCGCTTGAAGAAAAGGGCGTGAGTTTGAATTAATAATTATCCAGTACGCGATGTTTGATCGATCGATGATGTGCCTTTTTTTTTTGGTATTTGAAGTTTGAACTCTGAATTTCATCTTGTGTTAATTGGAGTAAAAAAAAAAAA]
[+] EMBL AU161979 [TGACCCTGAGCAGCTATCGGCGTGCGTGAGCCCGATCTTCTACGGACGGCGCCATCAGAGTCGTGCTGCTCCAACTTACGCGCACAGCAGAAGGAGGGGTGCCTCTGCCAGTACGCGAAAGACCCGACGTACGCGTCCTACGTCAACAACACCAACGCACGCAAGACCATCGCCGTGCGGCATCCCCATTCCCAGCTGCTAGGCTCGATCTCCCGCCGCCGCCGGCCATGATGCGTACGTGGCATATATACGCGTGGTGTGTACGTGCGCTTGAAGAAAAGGGCGTGAGTTTGAATTAATAATTATCCAGTACGCGATGTTTGATCGATCGATGATGTGCCTTTTTTTTTTGGTATTTGAAGTTTGAACTCTGAATTTCATCTTGTGTTAATTGGAGTAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13308#0 ACATTCGATCACATTCGGCTAGTAACCAAGCAGTTCTTACGCTAGAGCTAGCTCGAGCAA 60
consensus_13308#2 ------------------------------------------------------------
consensus_13308#1 ----------------------------CGATCACATTCGATCACATTCGGCTAGTAACC 32
consensus_13308#0 TGGTGAAGTGGGCAGCTGTGATGGAGATGCTTCTGCTGACGGCAGCAGCGACGGCGGTAG 120
consensus_13308#2 ------------------------------------------------------------
consensus_13308#1 AAGCGGCGGTTCTTGCGCTAGCTAGCTCGAGCAATGGCGAAGTGGGCGGCTGCGATGGAG 92
consensus_13308#0 CGGTGGTGGCGGCGCAGTGTGACCCTGAGCAGCTATCGGCGTGCGTGA-CCCGATCTTCT 179
consensus_13308#2 -------------------TGACCCTGAGCAGCTATCGGCGTGCGTGAGCCCGATCTTCT 41
consensus_13308#1 ATGCTTCTGCTGGTGGTGGTGACCCCGGGCTGCTGTCGCCATGCGCGGCCCCGATCTTCT 152
****** * ** *** *** * **** * ***********
consensus_13308#0 ACGGGACGGCGCCATCAGAGTCGTGCTGCTCCAACCTACGCGCACAGCAGAAGGAGGGGT 239
consensus_13308#2 ACGG-ACGGCGCCATCAGAGTCGTGCTGCTCCAACTTACGCGCACAGCAGAAGGAGGGGT 100
consensus_13308#1 TCGGGACGGCGCCGTCGGCGTCGTGCTGCTCTAGCCTGAAAGCACAGC------AGGGGT 206
*** ******** ** * ************ * * * ******* ******
consensus_13308#0 GCCTCTGCCAGTACGCGAAAGACCCGACGTACGCGTCCTACGTCAACAACACCAACGCAC 299
consensus_13308#2 GCCTCTGCCAGTACGCGAAAGACCCGACGTACGCGTCCTACGTCAACAACACCAACGCAC 160
consensus_13308#1 GCTTCTGCCAGTACGCGAAAGACCCGACGTACGCGTCCTACATCAACAGCACCAACGCAC 266
** ************************************** ****** ***********
consensus_13308#0 GCAAGACCATCGCCGCCTGCGGCATCCCCATTCCCAGCTGC---TAGGCTCGATCTCC-- 354
consensus_13308#2 GCAAGACCATCGCCG--TGCGGCATCCCCATTCCCAGCTGC---TAGGCTCGATCTCC-- 213
consensus_13308#1 GCAAGATGATCGCCGCCTGCGGCATCCCCTTTCCCAACTGCAGCTAGGCTCCGTCGCCGC 326
****** ******* ************ ****** **** ******* ** **
consensus_13308#0 ----CGCCGCCGCCGGCCATGATGCGTACGTGGCATATATACGCGTGGTGTGTAC-GTGC 409
consensus_13308#2 ----CGCCGCCGCCGGCCATGATGCGTACGTGGCATATATACGCGTGGTGTGTAC-GTGC 268
consensus_13308#1 CGTTCACCGGTGCGGGCCATGATGTGTG-GCAACATATATAAATATATGGTGTACTGCGT 385
* *** ** ********** ** * ******** * ****** * *
consensus_13308#0 GCTTGAAGAAAAGGGCGTGAGTTTGAATTAATAATTATCCAGTACGCGATGTTTGATCGA 469
consensus_13308#2 GCTTGAAGAAAAGGGCGTGAGTTTGAATTAATAATTATCCAGTACGCGATGTTTGATCGA 328
consensus_13308#1 GCTTGAATAAAATAAAG------------GACAAT------GTGTGGAAACATATATAAA 427
******* **** * * *** ** * * * ** *
consensus_13308#0 TCGATGATGTGCCTTTTTTTTTTGGTATTTGAAGTTTGAACTCTGAATTTCATCTTGTGT 529
consensus_13308#2 TCGATGATGTGCCTTTTTTTTTTGGTATTTGAAGTTTGAACTCTGAATTTCATCTTGTGT 388
consensus_13308#1 TATATGGTGTACTGTGTATTTGAATAATATAAAGGATGT--------------------- 466
* *** *** * * * *** ** * *** **
consensus_13308#0 TAATTGGAGTATGATAGCTGTGTGTACATTCGTTTTGGAGGTAGAGGCCGGTTTAATTAA 589
consensus_13308#2 TAATTGGAGTAAAAAAAAAAAA-------------------------------------- 410
consensus_13308#1 ------------------------------------------------------------
consensus_13308#0 AAAAAAAAAAA 600
consensus_13308#2 -----------
consensus_13308#1 -----------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||